Citrus Sinensis ID: 003931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-----
Protein Sequence
MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQK
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEEEccEEEEEccccccccccccccccccccccccccHHccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEccccccEEEccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHcccccccccccccccEEcccccccccccccEEEcccccccccccccccccccccccEEccccccccccccHHHHHHccHHccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccHHHHcccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEccccEEEEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEcccccccccccccccEEEEcccccccccccHHHHHHHcEEEcccccccccccHHHHcccccEEEEcccccccccccccHcccccccEEEEcccccccccccccHHcHHHHHHHcc
Coil and Loop (DISEMBL)
mgdlselqYLSVydnnlngaipfQLSSLRKVRyldlggnfletpdwskfssmpslthLGLYLNELTLEFPSFILTCRNLTYLDLSLnklsgliperlftnlgkleylnltenqfqgklspnvsklsnLIDLRlatnkfsgpipgdigsmsNLQLVELFNnsftgqipsslgqlknlqhLDLRMNalnytippelglctnLSYLALAVNQLsgglplslsnlsklndlglsdnflsgeiSANLIGNWTELESLQIQnnsfmgnippeiGLLTKLQYLFLYrnnfsgpipseiekltslenldlsgnqlsgtipptlWNLTNLLSLQLFsnnlsgtippeigSMASLVAFDvntnqlhgelpeNISRLVKLNKfsvftnnfsgsipgdfgkfspslinvsfsnnsfsgelphelcsgfaleeltvngnnftgslpaclrncsnlnrvrfdgnqftgnitkafgvhprldfirlsgnqfvgeispdwgecrnlsnlqldrnrisggipaelgnltrlgvlsldsneltgkiptdLGKLVKLFNlnlsnnhltgeipksisNLTELAYLdlsnnkltgdvpqelgRFDKLLSLNlshndlsgeipsnlGNLFVLQYMLDlssnslsgtipqelgklTSLEILNLSRnqlsgripasLSSMIslrsvdfsdnELTELAVTMRvtdkcdvfSFGVVALEVMMGRHPGELITSLsgelflkdvldqrlppptgqLAEAVVLTINVALActsttpdtrpsMRFVAQELSAKtqaylpepldtmRISKLRSLQK
Flexible Loop (DISEMBL)
MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTsttpdtrpsMRFVAQELSaktqaylpepldtmrisklrslqk
Low Complexity Region (SEG)
MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQlsgglplslsnlsklndlglsdnFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTlwnltnllslqlfsnnlsGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKllslnlshndlsGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQK
Disordered region (IsUnstruct)
******LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQL***I***L*SMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST****************************************
Disordered Region (DISOPRED)
MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ*****************RISKLRSL**
Disordered Region (DISEMBL)
MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQK
Disordered Region (DISPRO)
*GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	785	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.759	0.532	0.388	1e-110
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.722	0.542	0.413	1e-106
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.847	0.532	0.377	1e-103
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.847	0.531	0.364	1e-102
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.815	0.581	0.377	1e-101
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.785	0.567	0.391	2e-99
O49318	1124	Probable leucine-rich rep	no	no	0.751	0.524	0.382	2e-98
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.791	0.563	0.376	6e-96
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.8	0.526	0.351	1e-92
Q9LHP4	1141	Receptor-like protein kin	no	no	0.759	0.522	0.381	1e-91

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  400 bits (1027), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/649 (38%), Positives = 365/649 (56%), Gaps = 53/649 (8%)

Query: 68  EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
           +FP   ++  NL Y+DLS+N LSG IP + F NL KL Y +L+ N   G++SP++  L N
Sbjct: 95  DFP--FISLSNLAYVDLSMNLLSGTIPPQ-FGNLSKLIYFDLSTNHLTGEISPSLGNLKN 151

Query: 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
           L  L L  N  +  IP ++G+M ++  + L  N  TG IPSSLG LKNL  L L  N L 
Sbjct: 152 LTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLT 211

Query: 188 YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT 247
             IPPELG   +++ LAL+ N+L+G +P +L NL  L  L L +N+L+G I    IGN  
Sbjct: 212 GVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPE-IGNME 270

Query: 248 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQL 307
            + +L +  N   G+IP  +G L  L  L L++N  +G IP ++  + S+ +L+LS N+L
Sbjct: 271 SMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKL 330

Query: 308 SGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP------- 360
           +G+IP +L NL NL  L L+ N L+G IPPE+G+M S++   +N N+L G +P       
Sbjct: 331 TGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLK 390

Query: 361 -----------------ENISRLVKLNKFSVFTNNFSGSIPGDFGKFS------------ 391
                            + +  +  +    +  N  +GS+P  FG F+            
Sbjct: 391 NLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHL 450

Query: 392 -----PSLINVS------FSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCS 440
                P + N S         N+F+G  P  +C G  L+ ++++ N+  G +P  LR+C 
Sbjct: 451 SGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCK 510

Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           +L R RF GN+FTG+I +AFG++P L+FI  S N+F GEIS +W +   L  L +  N I
Sbjct: 511 SLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNI 570

Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
           +G IP E+ N+T+L  L L +N L G++P  +G L  L  L L+ N L+G +P  +S LT
Sbjct: 571 TGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLT 630

Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNS 620
            L  LDLS+N  + ++PQ    F KL  +NLS N   G IP  L  L  L   LDLS N 
Sbjct: 631 NLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLT-QLDLSHNQ 688

Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
           L G IP +L  L SL+ L+LS N LSG IP +   MI+L +VD S+N+L
Sbjct: 689 LDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKL 737

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/571 (41%), Positives = 330/571 (57%), Gaps = 4/571 (0%)

Query: 100 NLGKLEYLNLTENQFQGKLSP-NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158
           +LG +  LNLT    +G       S L NL  + L+ N+FSG I    G  S L+  +L 
Sbjct: 91  SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLS 150

Query: 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSL 218
            N   G+IP  LG L NL  L L  N LN +IP E+G  T ++ +A+  N L+G +P S 
Sbjct: 151 INQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query: 219 SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 278
            NL+KL +L L  N LSG I +  IGN   L  L +  N+  G IP   G L  +  L +
Sbjct: 211 GNLTKLVNLYLFINSLSGSIPSE-IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNM 269

Query: 279 YRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPE 338
           + N  SG IP EI  +T+L+ L L  N+L+G IP TL N+  L  L L+ N L+G+IPPE
Sbjct: 270 FENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPE 329

Query: 339 IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVS 398
           +G M S++  +++ N+L G +P++  +L  L    +  N  SG IP      S  L  + 
Sbjct: 330 LGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN-STELTVLQ 388

Query: 399 FSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITK 458
              N+F+G LP  +C G  LE LT++ N+F G +P  LR+C +L RVRF GN F+G+I++
Sbjct: 389 LDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISE 448

Query: 459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLS 518
           AFGV+P L+FI LS N F G++S +W + + L    L  N I+G IP E+ N+T+L  L 
Sbjct: 449 AFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLD 508

Query: 519 LDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQ 578
           L SN +TG++P  +  + ++  L L+ N L+G+IP  I  LT L YLDLS+N+ + ++P 
Sbjct: 509 LSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPP 568

Query: 579 ELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEIL 638
            L    +L  +NLS NDL   IP  L  L  LQ MLDLS N L G I  +   L +LE L
Sbjct: 569 TLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQ-MLDLSYNQLDGEISSQFRSLQNLERL 627

Query: 639 NLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
           +LS N LSG+IP S   M++L  VD S N L
Sbjct: 628 DLSHNNLSGQIPPSFKDMLALTHVDVSHNNL 658

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/670 (37%), Positives = 362/670 (54%), Gaps = 5/670 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +G+L  LQ L++    L G IP QL  L +V+ L L  N+LE P  ++  +   LT    
Sbjct: 163 LGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTA 222

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             N L    P+ +    NL  L+L+ N L+G IP +L   + +L+YL+L  NQ QG +  
Sbjct: 223 AENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQL-GEMSQLQYLSLMANQLQGLIPK 281

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNLQHL 179
           +++ L NL  L L+ N  +G IP +  +MS L  + L NN  +G +P S+     NL+ L
Sbjct: 282 SLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQL 341

Query: 180 DLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEIS 239
            L    L+  IP EL  C +L  L L+ N L+G +P +L  L +L DL L +N L G +S
Sbjct: 342 VLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS 401

Query: 240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299
            + I N T L+ L + +N+  G +P EI  L KL+ LFLY N FSG IP EI   TSL+ 
Sbjct: 402 PS-ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKM 460

Query: 300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359
           +D+ GN   G IPP++  L  L  L L  N L G +P  +G+   L   D+  NQL G +
Sbjct: 461 IDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query: 360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALE 419
           P +   L  L +  ++ N+  G++P        +L  ++ S+N  +G + H LC   +  
Sbjct: 521 PSSFGFLKGLEQLMLYNNSLQGNLPDSLISLR-NLTRINLSHNRLNGTI-HPLCGSSSYL 578

Query: 420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
              V  N F   +P  L N  NL+R+R   NQ TG I    G    L  + +S N   G 
Sbjct: 579 SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGT 638

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           I      C+ L+++ L+ N +SG IP  LG L++LG L L SN+    +PT+L    KL 
Sbjct: 639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLL 698

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
            L+L  N L G IP+ I NL  L  L+L  N+ +G +PQ +G+  KL  L LS N L+GE
Sbjct: 699 VLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGE 758

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IP  +G L  LQ  LDLS N+ +G IP  +G L+ LE L+LS NQL+G +P S+  M SL
Sbjct: 759 IPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSL 818

Query: 660 RSVDFSDNEL 669
             ++ S N L
Sbjct: 819 GYLNVSFNNL 828

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/670 (36%), Positives = 362/670 (54%), Gaps = 5/670 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
            G+L  LQ L++    L G IP +   L +++ L L  N LE P  ++  +  SL     
Sbjct: 164 FGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAA 223

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             N L    P+ +   +NL  L+L  N  SG IP +L  +L  ++YLNL  NQ QG +  
Sbjct: 224 AFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPK 282

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNLQHL 179
            +++L+NL  L L++N  +G I  +   M+ L+ + L  N  +G +P ++     +L+ L
Sbjct: 283 RLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQL 342

Query: 180 DLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEIS 239
            L    L+  IP E+  C +L  L L+ N L+G +P SL  L +L +L L++N L G +S
Sbjct: 343 FLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLS 402

Query: 240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299
           ++ I N T L+   + +N+  G +P EIG L KL+ ++LY N FSG +P EI   T L+ 
Sbjct: 403 SS-ISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQE 461

Query: 300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359
           +D  GN+LSG IP ++  L +L  L L  N L G IP  +G+   +   D+  NQL G +
Sbjct: 462 IDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSI 521

Query: 360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALE 419
           P +   L  L  F ++ N+  G++P        +L  ++FS+N F+G +   LC   +  
Sbjct: 522 PSSFGFLTALELFMIYNNSLQGNLPDSLINLK-NLTRINFSSNKFNGSI-SPLCGSSSYL 579

Query: 420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
              V  N F G +P  L   +NL+R+R   NQFTG I + FG    L  + +S N   G 
Sbjct: 580 SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGI 639

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           I  + G C+ L+++ L+ N +SG IP  LG L  LG L L SN+  G +PT++  L  + 
Sbjct: 640 IPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNIL 699

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
            L L  N L G IP+ I NL  L  L+L  N+L+G +P  +G+  KL  L LS N L+GE
Sbjct: 700 TLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGE 759

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IP  +G L  LQ  LDLS N+ +G IP  +  L  LE L+LS NQL G +P  +  M SL
Sbjct: 760 IPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSL 819

Query: 660 RSVDFSDNEL 669
             ++ S N L
Sbjct: 820 GYLNLSYNNL 829

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 247/655 (37%), Positives = 354/655 (54%), Gaps = 15/655 (2%)

Query: 46  WSKFSSMP------SLTHL----GLYLNELTLEFPSFILTCR--NLTYLDLSLNKLSGLI 93
           W++  S P      + THL     + LN + L      L C+   L  L++S N +SG I
Sbjct: 48  WNQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPI 107

Query: 94  PERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQ 153
           P+ L +    LE L+L  N+F G +   ++ +  L  L L  N   G IP  IG++S+LQ
Sbjct: 108 PQDL-SLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQ 166

Query: 154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG 213
            + +++N+ TG IP S+ +L+ L+ +    N  +  IP E+  C +L  L LA N L G 
Sbjct: 167 ELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGS 226

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 273
           LP  L  L  L DL L  N LSGEI  + +GN + LE L +  N F G+IP EIG LTK+
Sbjct: 227 LPKQLEKLQNLTDLILWQNRLSGEIPPS-VGNISRLEVLALHENYFTGSIPREIGKLTKM 285

Query: 274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSG 333
           + L+LY N  +G IP EI  L     +D S NQL+G IP    ++ NL  L LF N L G
Sbjct: 286 KRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLG 345

Query: 334 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPS 393
            IP E+G +  L   D++ N+L+G +P+ +  L  L    +F N   G IP   G +S  
Sbjct: 346 PIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNF 405

Query: 394 LINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT 453
            + +  S NS SG +P   C    L  L++  N  +G++P  L+ C +L ++    NQ T
Sbjct: 406 SV-LDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLT 464

Query: 454 GNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTR 513
           G++         L  + L  N   G IS D G+ +NL  L+L  N  +G IP E+GNLT+
Sbjct: 465 GSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTK 524

Query: 514 LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
           +   ++ SN+LTG IP +LG  V +  L+LS N  +G I + +  L  L  L LS+N+LT
Sbjct: 525 IVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLT 584

Query: 574 GDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLT 633
           G++P   G   +L+ L L  N LS  IP  LG L  LQ  L++S N+LSGTIP  LG L 
Sbjct: 585 GEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQ 644

Query: 634 SLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFG 688
            LEIL L+ N+LSG IPAS+ +++SL   + S+N L        V  + D  +F 
Sbjct: 645 MLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFA 699

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  364 bits (934), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 249/636 (39%), Positives = 337/636 (52%), Gaps = 19/636 (2%)

Query: 35  DLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIP 94
           DL GN +ET              L L  + L+ +  S I   ++L  LDLSLN  SGL+P
Sbjct: 72  DLSGNVVET--------------LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLP 117

Query: 95  ERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQL 154
             L  N   LEYL+L+ N F G++      L NL  L L  N  SG IP  +G +  L  
Sbjct: 118 STL-GNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVD 176

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
           + +  N+ +G IP  LG    L++L L  N LN ++P  L L  NL  L ++ N L G L
Sbjct: 177 LRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRL 236

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 274
               SN  KL  L LS N   G +    IGN + L SL +   +  G IP  +G+L K+ 
Sbjct: 237 HFGSSNCKKLVSLDLSFNDFQGGVPPE-IGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVS 295

Query: 275 YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT 334
            + L  N  SG IP E+   +SLE L L+ NQL G IPP L  L  L SL+LF N LSG 
Sbjct: 296 VIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGE 355

Query: 335 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL 394
           IP  I  + SL    V  N L GELP  +++L  L K ++F N F G IP   G  + SL
Sbjct: 356 IPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLG-LNRSL 414

Query: 395 INVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTG 454
             V    N F+GE+P  LC G  L    +  N   G +PA +R C  L RVR + N+ +G
Sbjct: 415 EEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSG 474

Query: 455 NITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRL 514
            +   F     L ++ L  N F G I    G C+NL  + L +N+++G IP ELGNL  L
Sbjct: 475 -VLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSL 533

Query: 515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG 574
           G+L+L  N L G +P+ L    +L   ++ +N L G IP S  +   L+ L LS+N   G
Sbjct: 534 GLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLG 593

Query: 575 DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTS 634
            +PQ L   D+L  L ++ N   G+IPS++G L  L+Y LDLS+N  +G IP  LG L +
Sbjct: 594 AIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALIN 653

Query: 635 LEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT 670
           LE LN+S N+L+G + + L S+ SL  VD S N+ T
Sbjct: 654 LERLNISNNKLTGPL-SVLQSLKSLNQVDVSYNQFT 688

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  360 bits (924), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 227/593 (38%), Positives = 321/593 (54%), Gaps = 3/593 (0%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
           NL YL+L+ N L+G IP R   N  KLE + L  NQF G +   ++KLS L    +  NK
Sbjct: 110 NLVYLNLAYNALTGDIP-REIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNK 168

Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
            SGP+P +IG + NL+ +  + N+ TG +P SLG L  L       N  +  IP E+G C
Sbjct: 169 LSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKC 228

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
            NL  L LA N +SG LP  +  L KL ++ L  N  SG I  + IGN T LE+L +  N
Sbjct: 229 LNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKD-IGNLTSLETLALYGN 287

Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317
           S +G IP EIG +  L+ L+LY+N  +G IP E+ KL+ +  +D S N LSG IP  L  
Sbjct: 288 SLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSK 347

Query: 318 LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN 377
           ++ L  L LF N L+G IP E+  + +L   D++ N L G +P     L  + +  +F N
Sbjct: 348 ISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHN 407

Query: 378 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR 437
           + SG IP   G +SP  + V FS N  SG++P  +C    L  L +  N   G++P  + 
Sbjct: 408 SLSGVIPQGLGLYSPLWV-VDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVL 466

Query: 438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDR 497
            C +L ++R  GN+ TG           L  I L  N+F G + P+ G C+ L  L L  
Sbjct: 467 RCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAA 526

Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
           N+ S  +P E+  L+ L   ++ SN LTG IP+++     L  L+LS N   G +P  + 
Sbjct: 527 NQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELG 586

Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLS 617
           +L +L  L LS N+ +G++P  +G    L  L +  N  SG IP  LG L  LQ  ++LS
Sbjct: 587 SLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLS 646

Query: 618 SNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT 670
            N  SG IP E+G L  L  L+L+ N LSG IP +  ++ SL   +FS N LT
Sbjct: 647 YNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLT 699

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  352 bits (904), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 235/624 (37%), Positives = 344/624 (55%), Gaps = 3/624 (0%)

Query: 47  SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
           S +SS P +  L L    L+ +    I    +L  LDLS N LSG IP+ +  N   LE 
Sbjct: 67  SNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEI-GNCSSLEI 125

Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
           L L  NQF G++   + KL +L +L +  N+ SG +P +IG++ +L  +  ++N+ +GQ+
Sbjct: 126 LKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQL 185

Query: 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND 226
           P S+G LK L       N ++ ++P E+G C +L  L LA NQLSG LP  +  L KL+ 
Sbjct: 186 PRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQ 245

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286
           + L +N  SG I    I N T LE+L +  N  +G IP E+G L  L++L+LYRN  +G 
Sbjct: 246 VILWENEFSGFIPRE-ISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGT 304

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346
           IP EI  L+    +D S N L+G IP  L N+  L  L LF N L+GTIP E+ ++ +L 
Sbjct: 305 IPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLS 364

Query: 347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
             D++ N L G +P     L  L    +F N+ SG+IP   G +S  L  +  S+N  SG
Sbjct: 365 KLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYS-DLWVLDMSDNHLSG 423

Query: 407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRL 466
            +P  LC    +  L +  NN +G++P  +  C  L ++R   N   G           +
Sbjct: 424 RIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNV 483

Query: 467 DFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
             I L  N+F G I  + G C  L  LQL  N  +G +P E+G L++LG L++ SN+LTG
Sbjct: 484 TAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTG 543

Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKL 586
           ++P+++     L  L++  N+ +G +P  + +L +L  L LSNN L+G +P  LG   +L
Sbjct: 544 EVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRL 603

Query: 587 LSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
             L +  N  +G IP  LG+L  LQ  L+LS N L+G IP EL  L  LE L L+ N LS
Sbjct: 604 TELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLS 663

Query: 647 GRIPASLSSMISLRSVDFSDNELT 670
           G IP+S +++ SL   +FS N LT
Sbjct: 664 GEIPSSFANLSSLLGYNFSYNSLT 687

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  341 bits (874), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 252/717 (35%), Positives = 358/717 (49%), Gaps = 89/717 (12%)

Query: 19  GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRN 78
           G IP ++SSL+ +R L L GN        +  ++  L  L L  N LT   P  +     
Sbjct: 79  GQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQ 138

Query: 79  LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
           L YLDLS N  SG +P   F +L  L  L+++ N   G++ P + KLSNL +L +  N F
Sbjct: 139 LLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSF 198

Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP------- 191
           SG IP +IG++S L+     +  F G +P  + +LK+L  LDL  N L  +IP       
Sbjct: 199 SGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELH 258

Query: 192 -----------------PELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
                            PELG C +L  L L+ N LSG LPL LS +  L       N L
Sbjct: 259 NLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLT-FSAERNQL 317

Query: 235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKL 294
           SG + +  +G W  L+SL + NN F G IP EI     L++L L  N  SG IP E+   
Sbjct: 318 SGSLPS-WMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGS 376

Query: 295 TSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQ 354
            SLE +DLSGN LSGTI       ++L  L L +N ++G+IP ++  +  L+A D+++N 
Sbjct: 377 GSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALDLDSNN 435

Query: 355 LHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCS 414
             GE+P+++ +   L +F+   N   G +P + G  + SL  +  S+N  +GE+P E+  
Sbjct: 436 FTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGN-AASLKRLVLSDNQLTGEIPREIGK 494

Query: 415 GFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGV------------ 462
             +L  L +N N F G +P  L +C++L  +    N   G I                  
Sbjct: 495 LTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYN 554

Query: 463 ------------------HPRLDFIR------LSGNQFVGEISPDWGECRNLSNLQLDRN 498
                              P L F++      LS N+  G I  + GEC  L  + L  N
Sbjct: 555 NLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNN 614

Query: 499 RISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS--- 555
            +SG IPA L  LT L +L L  N LTG IP ++G  +KL  LNL+NN L G IP+S   
Sbjct: 615 HLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGL 674

Query: 556 ---------------------ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
                                + NL EL ++DLS N L+G++  EL   +KL+ L +  N
Sbjct: 675 LGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQN 734

Query: 595 DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPA 651
             +GEIPS LGNL  L+Y LD+S N LSG IP ++  L +LE LNL++N L G +P+
Sbjct: 735 KFTGEIPSELGNLTQLEY-LDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS 790

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  338 bits (866), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 344/603 (57%), Gaps = 7/603 (1%)

Query: 50  SSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109
           SS   +T + +    L L  P  +   R+L  L +S   L+G +PE L   LG L+ L+L
Sbjct: 78  SSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLG-LKVLDL 136

Query: 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSS 169
           + N   G +  ++SKL NL  L L +N+ +G IP DI   S L+ + LF+N  TG IP+ 
Sbjct: 137 SSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTE 196

Query: 170 LGQLKNLQHLDLRMNA-LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLG 228
           LG+L  L+ + +  N  ++  IP E+G C+NL+ L LA   +SG LP SL  L KL  L 
Sbjct: 197 LGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLS 256

Query: 229 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288
           +    +SGEI ++L GN +EL  L +  NS  G+IP EIG LTKL+ LFL++N+  G IP
Sbjct: 257 IYTTMISGEIPSDL-GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIP 315

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAF 348
            EI   ++L+ +DLS N LSG+IP ++  L+ L    +  N  SG+IP  I + +SLV  
Sbjct: 316 EEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQL 375

Query: 349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 408
            ++ NQ+ G +P  +  L KL  F  ++N   GSIP      +  L  +  S NS +G +
Sbjct: 376 QLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCT-DLQALDLSRNSLTGTI 434

Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
           P  L     L +L +  N+ +G +P  + NCS+L R+R   N+ TG I    G   +++F
Sbjct: 435 PSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINF 494

Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKI 528
           +  S N+  G++  + G C  L  + L  N + G +P  + +L+ L VL + +N+ +GKI
Sbjct: 495 LDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKI 554

Query: 529 PTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKL-L 587
           P  LG+LV L  L LS N  +G IP S+   + L  LDL +N+L+G++P ELG  + L +
Sbjct: 555 PASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEI 614

Query: 588 SLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG 647
           +LNLS N L+G+IPS + +L  L  +LDLS N L G +   L  + +L  LN+S N  SG
Sbjct: 615 ALNLSSNRLTGKIPSKIASLNKLS-ILDLSHNMLEGDL-APLANIENLVSLNISYNSFSG 672

Query: 648 RIP 650
            +P
Sbjct: 673 YLP 675

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	785
255571222	1224	receptor protein kinase, putative [Ricin	0.834	0.535	0.691	0.0
224070124	1202	predicted protein [Populus trichocarpa]	0.852	0.556	0.685	0.0
224103093	1178	predicted protein [Populus trichocarpa]	0.873	0.582	0.669	0.0
224132304	1199	predicted protein [Populus trichocarpa]	0.847	0.554	0.668	0.0
225438015	1219	PREDICTED: probable LRR receptor-like se	0.852	0.548	0.648	0.0
224070104	1142	predicted protein [Populus trichocarpa]	0.852	0.585	0.657	0.0
359480046	1219	PREDICTED: probable LRR receptor-like se	0.852	0.548	0.648	0.0
359480048	1219	PREDICTED: probable LRR receptor-like se	0.852	0.548	0.654	0.0
356570668	1230	PREDICTED: probable LRR receptor-like se	0.859	0.548	0.633	0.0
356503631	1228	PREDICTED: probable LRR receptor-like se	0.924	0.591	0.574	0.0

>gi|255571222|ref|XP_002526561.1| receptor protein kinase, putative [Ricinus communis] gi|223534122|gb|EEF35839.1| receptor protein kinase, putative [Ricinus communis]

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/670 (69%), Positives = 538/670 (80%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           MG L+ELQ+L++Y NNLNG IP+QLS+L+ VRYLDLG NF +TPDWSKFSSMPSL HL L
Sbjct: 141 MGRLAELQFLNLYYNNLNGTIPYQLSNLQNVRYLDLGANFFQTPDWSKFSSMPSLIHLSL 200

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           + NEL+  FP F+  CRNLT+LDLS N+ +G++PE  +T+LGK+EYLNLTEN FQG LS 
Sbjct: 201 FFNELSSGFPDFLSNCRNLTFLDLSSNQFTGMVPEWAYTDLGKIEYLNLTENSFQGPLSS 260

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+SKLSNL  LRLA N FSG IPG IG +S+LQ+VELFNNSF G IPSSLG+L+NL+ LD
Sbjct: 261 NISKLSNLKHLRLANNNFSGQIPGSIGFLSDLQIVELFNNSFIGNIPSSLGRLRNLESLD 320

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           LRMN LN TIPPELGLCTNL+YLALA+NQLSG LPLSL+NL+K+ DLGLSDN L+GEIS 
Sbjct: 321 LRMNDLNSTIPPELGLCTNLTYLALALNQLSGELPLSLANLTKMVDLGLSDNVLTGEISP 380

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
            L  NWTEL SLQ+QNN   G+IP EIG LTKL  LFLY N  SG IP EI  L  L  L
Sbjct: 381 YLFSNWTELFSLQLQNNMLSGHIPSEIGQLTKLNLLFLYNNTLSGSIPFEIGNLKDLGTL 440

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           ++SGNQLSG IPPTLWNLTNL  + LFSNN+SG IPP+IG+M +L   D++ NQL+GELP
Sbjct: 441 EISGNQLSGPIPPTLWNLTNLQVMNLFSNNISGIIPPDIGNMTALTLLDLSGNQLYGELP 500

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           E ISRL  L   ++FTNNFSGSIP DFGK+SPSL   SFS+NSF GELP E+CSG AL++
Sbjct: 501 ETISRLSSLQSINLFTNNFSGSIPSDFGKYSPSLSYASFSDNSFFGELPPEICSGLALKQ 560

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
            TVN NNFTGSLP CLRNCS L RVR DGNQFTGNIT AFGVHP L FI LSGNQF+GEI
Sbjct: 561 FTVNDNNFTGSLPTCLRNCSGLTRVRLDGNQFTGNITDAFGVHPGLYFISLSGNQFIGEI 620

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
           SP WGEC NL+N  +DRNRISG IPAELG LT+LG L+LDSN+LTG IP +LG L  L +
Sbjct: 621 SPVWGECENLTNFHIDRNRISGEIPAELGKLTKLGALTLDSNDLTGMIPIELGNLSMLLS 680

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           LNLSNNHL G IP S+ +L++L  LDLS+NKL+G++P EL   +KL SL+LSHN+LSGEI
Sbjct: 681 LNLSNNHLRGVIPLSLGSLSKLESLDLSDNKLSGNIPDELANCEKLSSLDLSHNNLSGEI 740

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
           P  LGNL  L+Y+LDLSSNSLSG IP  LGKLT LE L++S N LSGRIP +LS MISL 
Sbjct: 741 PFELGNLNSLKYLLDLSSNSLSGPIPANLGKLTLLENLDVSHNNLSGRIPTALSGMISLH 800

Query: 661 SVDFSDNELT 670
           S DFS NELT
Sbjct: 801 SFDFSYNELT 810

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070124|ref|XP_002303118.1| predicted protein [Populus trichocarpa] gi|222844844|gb|EEE82391.1| predicted protein [Populus trichocarpa]

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/670 (68%), Positives = 534/670 (79%), Gaps = 1/670 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L+ELQYLS+Y+NNLNG IPFQL++L KVR+LDLG N+LE PDWSKFS MPSL +L  
Sbjct: 142 ISQLTELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSKFS-MPSLEYLSF 200

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           +LNELT EFP FI  CRNLT+LDLSLNK +G IPE ++TNLGKLE LNL  N FQG LS 
Sbjct: 201 FLNELTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSS 260

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+SKLSNL ++ L  N   G IP  IGS+S LQ+VEL  NSF G IP S+GQLK+L+ LD
Sbjct: 261 NISKLSNLKNISLQYNLLRGQIPESIGSISGLQIVELLGNSFQGNIPPSIGQLKHLEKLD 320

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           LRMNALN TIPPELGLCTNL+YLALA NQLSG LPLSLSNLSK+ D+GLS+N LSGEIS 
Sbjct: 321 LRMNALNSTIPPELGLCTNLTYLALADNQLSGELPLSLSNLSKIADMGLSENSLSGEISP 380

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
            LI NWTEL SLQ+QNN F GNIPPEIG LT LQYLFLY N FSG IP EI  L  L +L
Sbjct: 381 TLISNWTELISLQVQNNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSL 440

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLSGNQLSG +PP LWNLTNL  L LFSNN++G IPPE+G++  L   D+NTNQLHGELP
Sbjct: 441 DLSGNQLSGPLPPALWNLTNLQILNLFSNNINGKIPPEVGNLTMLQILDLNTNQLHGELP 500

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
             IS +  L   ++F NN SGSIP DFGK+ PSL   SFSNNSFSGELP ELC G +L++
Sbjct: 501 LTISDITSLTSINLFGNNLSGSIPSDFGKYMPSLAYASFSNNSFSGELPPELCRGRSLQQ 560

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
            TVN N+FTGSLP CLRNCS L+RVR + N+FTGNIT AFGV P L F+ LS NQF+GEI
Sbjct: 561 FTVNSNSFTGSLPTCLRNCSELSRVRLEKNRFTGNITDAFGVLPNLVFVALSDNQFIGEI 620

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
           SPDWGEC+NL+NLQ+D NRISG IPAELG L +L VLSL SN+L G+IP +LG L +LF 
Sbjct: 621 SPDWGECKNLTNLQMDGNRISGEIPAELGKLPQLRVLSLGSNDLAGRIPAELGNLSRLFM 680

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           LNLSNN LTGE+P+S+++L  L YLDLS+NKLTG++ +ELG ++KL SL+LSHN+L+GEI
Sbjct: 681 LNLSNNQLTGEVPQSLTSLEGLEYLDLSDNKLTGNISKELGSYEKLSSLDLSHNNLAGEI 740

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
           P  LGNL  L+Y+LDLSSNSLSG IPQ   KL+ LEILN+S N LSGRIP SLSSM+SL 
Sbjct: 741 PFELGNLNSLRYLLDLSSNSLSGAIPQNFAKLSQLEILNVSHNHLSGRIPDSLSSMLSLS 800

Query: 661 SVDFSDNELT 670
           S DFS NELT
Sbjct: 801 SFDFSYNELT 810

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103093|ref|XP_002334092.1| predicted protein [Populus trichocarpa] gi|222869551|gb|EEF06682.1| predicted protein [Populus trichocarpa]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/687 (66%), Positives = 536/687 (78%), Gaps = 1/687 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L+ELQYLS+Y+NNLNG IPFQL++L KVR+LDLG N+LE PDWS FS MPSL +L  
Sbjct: 141 ISQLTELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSNFS-MPSLEYLSF 199

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           +LNELT EFP FI  CRNLT+LDLSLNK +G IPE ++TNLGKLE LNL  N FQG LS 
Sbjct: 200 FLNELTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSS 259

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+SKLSNL ++ L  N  SG IP  IGS+S LQ+VELF NSF G IP S+GQLK+L+ LD
Sbjct: 260 NISKLSNLKNISLQYNLLSGQIPESIGSISGLQIVELFGNSFQGNIPPSIGQLKHLEKLD 319

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           LRMNALN TIPPELGLCTNL+YL LA NQLSG LPLSLSNL+K+ D+GLS+N LSGEIS 
Sbjct: 320 LRMNALNSTIPPELGLCTNLTYLTLADNQLSGELPLSLSNLAKIADMGLSENSLSGEISP 379

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
            LI NWTEL SLQ+QNN F GNIPPEIG LT LQYLFLY N FSG IP EI  L  L +L
Sbjct: 380 TLISNWTELISLQVQNNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSL 439

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLSGNQLSG +PP LWNLTNL  L LFSNN++G IPPE+G++  L   D+NTNQLHGELP
Sbjct: 440 DLSGNQLSGPLPPALWNLTNLQILNLFSNNINGKIPPEVGNLTMLQILDLNTNQLHGELP 499

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
             IS +  L   ++F NN SGSIP DFGK+ PSL   SFSNNSFSGELP ELC G +L++
Sbjct: 500 LTISDITSLTSINLFGNNLSGSIPSDFGKYMPSLAYASFSNNSFSGELPPELCRGRSLQQ 559

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
            TVN N+FTGSLP CLRNCS L+RVR + N+FTGNIT AFGV P L F+ LS NQF+GEI
Sbjct: 560 FTVNSNSFTGSLPTCLRNCSELSRVRLEKNRFTGNITDAFGVLPNLVFVALSDNQFIGEI 619

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
           SPDWGEC+NL+NLQ+D NRISG IPAELG L +L VLSL SN+L G+IP +LG L +LF 
Sbjct: 620 SPDWGECKNLTNLQMDGNRISGEIPAELGKLPQLRVLSLGSNDLAGRIPAELGNLSRLFM 679

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           LNLSNN LTGE+P+S+++L  L  LDLS+NKLTG++ +ELG ++KL SL+LSHN+L+GEI
Sbjct: 680 LNLSNNQLTGEVPQSLTSLEGLESLDLSDNKLTGNISKELGSYEKLSSLDLSHNNLAGEI 739

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
           P  LGNL  L+Y+LDLSSNSLSG IPQ   KL+ LEILN+S N LSGRIP SLSSM SL 
Sbjct: 740 PFELGNLNSLRYLLDLSSNSLSGAIPQNFAKLSQLEILNVSHNHLSGRIPDSLSSMRSLS 799

Query: 661 SVDFSDNELTELAVTMRVTDKCDVFSF 687
           S DFS NELT    T  +       SF
Sbjct: 800 SFDFSYNELTGPIPTGSIFKNASARSF 826

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132304|ref|XP_002321306.1| predicted protein [Populus trichocarpa] gi|222862079|gb|EEE99621.1| predicted protein [Populus trichocarpa]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/687 (66%), Positives = 530/687 (77%), Gaps = 22/687 (3%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           + +L+ELQYLS+++NNLNG IP QLS+L KVR+LDLG N+LETPDWSKFS MPSL +L L
Sbjct: 143 ISELTELQYLSLFNNNLNGTIPSQLSNLLKVRHLDLGANYLETPDWSKFS-MPSLEYLSL 201

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           + NELT EFP FI +CRNLT+LDLSLN  +G IPE  +TNLGKLE LNL  N FQG LSP
Sbjct: 202 FFNELTSEFPDFITSCRNLTFLDLSLNNFTGQIPELAYTNLGKLETLNLYNNLFQGPLSP 261

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            +S LSNL  L L TN   G IP  IGS+S L+  ELF+NSF G IPSSLG+LK+L+ LD
Sbjct: 262 KISMLSNLKSLSLQTNLLGGQIPESIGSISGLRTAELFSNSFQGTIPSSLGKLKHLEKLD 321

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           LRMNALN TIPPELGLCTNL+YLALA NQLSG LPLSLSNLSK+ DLGLS+NF SGEIS 
Sbjct: 322 LRMNALNSTIPPELGLCTNLTYLALADNQLSGELPLSLSNLSKIADLGLSENFFSGEISP 381

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
            LI NWTEL S Q+QNN+F GNIPPEIG LT LQ+LFLY N+FSG IP EI  L  L +L
Sbjct: 382 ALISNWTELTSFQVQNNNFSGNIPPEIGQLTMLQFLFLYNNSFSGSIPHEIGNLEELTSL 441

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLSGNQLSG IPPTLWNLTNL +L LF NN++GTIPPE+G+M +L   D+NTNQLHGELP
Sbjct: 442 DLSGNQLSGPIPPTLWNLTNLETLNLFFNNINGTIPPEVGNMTALQILDLNTNQLHGELP 501

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           E IS L  L   ++F NNFSGSIP +FGK  PSL+  SFSNNSFSGELP ELCSG +L++
Sbjct: 502 ETISNLTFLTSINLFGNNFSGSIPSNFGKNIPSLVYASFSNNSFSGELPPELCSGLSLQQ 561

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
           LTVN NNFTG+LP CLRNC  L RVR +GNQFTGNIT AFGV P L F+ L+ NQF+GEI
Sbjct: 562 LTVNSNNFTGALPTCLRNCLGLTRVRLEGNQFTGNITHAFGVLPNLVFVALNDNQFIGEI 621

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
           SPDWG C NL+NLQ+ RNRISG IPAELG L RLG+LSLDSN+LTG+IP           
Sbjct: 622 SPDWGACENLTNLQMGRNRISGEIPAELGKLPRLGLLSLDSNDLTGRIP----------- 670

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
                    GEIP+ + +LT L  LDLS+NKLTG++ +ELG ++KL SL+LSHN+LSGEI
Sbjct: 671 ---------GEIPQGLGSLTRLESLDLSDNKLTGNISKELGGYEKLSSLDLSHNNLSGEI 721

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
           P  LGNL  L+Y+LDLSSNSLSGTIP  LGKL+ LE LN+S N LSGRIP SLS+MISL 
Sbjct: 722 PFELGNL-NLRYLLDLSSNSLSGTIPSNLGKLSMLENLNVSHNHLSGRIPDSLSTMISLH 780

Query: 661 SVDFSDNELTELAVTMRVTDKCDVFSF 687
           S DFS N+LT    T  V       SF
Sbjct: 781 SFDFSYNDLTGPIPTGSVFQNASARSF 807

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438015|ref|XP_002270968.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/671 (64%), Positives = 530/671 (78%), Gaps = 2/671 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +G L+EL YLS YDN L G IP+Q+++L+K+ YLDLG N+L++PDWSKFSSMP LT L  
Sbjct: 142 IGGLTELLYLSFYDNYLVGTIPYQITNLQKMWYLDLGSNYLQSPDWSKFSSMPLLTRLSF 201

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             N L  EFP FI  C NLTYLDL+ N+L+G IPE +F+NLGKLE+LNLT+N F+G LS 
Sbjct: 202 NYNTLASEFPGFITDCWNLTYLDLAQNQLTGAIPESVFSNLGKLEFLNLTDNSFRGPLSS 261

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+S+LS L +LRL  N+FSG IP +IG++S+L+++E++NNSF GQIPSS+GQL+ LQ LD
Sbjct: 262 NISRLSKLQNLRLGRNQFSGSIPEEIGTLSDLEILEMYNNSFEGQIPSSIGQLRKLQILD 321

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           ++ NALN TIP ELG CTNL++L+LAVN LSG +P S +NL+K+++LGLSDNFLSGEIS 
Sbjct: 322 IQRNALNSTIPSELGSCTNLTFLSLAVNSLSGVIPSSFTNLNKISELGLSDNFLSGEISP 381

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             I NWT L SLQ+QNNSF G IP EIGLL KL YLFLY N  SG IPSEI  L  L  L
Sbjct: 382 YFITNWTGLISLQVQNNSFTGKIPSEIGLLEKLNYLFLYNNMLSGAIPSEIGNLKDLLQL 441

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLS NQLSG IP   WNLT L +L L+ NNL+GTIPPEIG++ SL   D+NTN+LHGELP
Sbjct: 442 DLSQNQLSGPIPVVEWNLTQLTTLHLYENNLTGTIPPEIGNLTSLTVLDLNTNKLHGELP 501

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           E +S L  L + SVFTNNFSG+IP + GK +  L  VSF+NNSFSGELP  LC+GFAL+ 
Sbjct: 502 ETLSLLNNLERLSVFTNNFSGTIPTELGKNNLKLTLVSFANNSFSGELPPGLCNGFALQN 561

Query: 421 LTVN-GNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
           LTVN GNNFTG LP CLRNC+ L RVR +GNQFTG+I+KAFGVHP L F+ LSGN+F GE
Sbjct: 562 LTVNGGNNFTGPLPDCLRNCTGLTRVRLEGNQFTGDISKAFGVHPSLVFLSLSGNRFSGE 621

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           +SP+WGEC+ L++LQ+D N+ISG +PAELG L+ LG LSLDSNEL+G+IP  L  L +LF
Sbjct: 622 LSPEWGECQKLTSLQVDGNKISGEVPAELGKLSHLGFLSLDSNELSGQIPVALANLSQLF 681

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
           NL+L  NHLTG+IP+ I  LT L YL+L+ N  +G +P+ELG  ++LLSLNL +NDLSGE
Sbjct: 682 NLSLGKNHLTGDIPQFIGTLTNLNYLNLAGNNFSGSIPKELGNCERLLSLNLGNNDLSGE 741

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IPS LGNLF LQY+LDLSSNSLSGTIP +LGKL SLE LN+S N L+GRIP SLS M+SL
Sbjct: 742 IPSELGNLFSLQYLLDLSSNSLSGTIPSDLGKLASLENLNVSHNHLTGRIP-SLSGMVSL 800

Query: 660 RSVDFSDNELT 670
            S DFS NELT
Sbjct: 801 NSSDFSYNELT 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070104|ref|XP_002303115.1| predicted protein [Populus trichocarpa] gi|222844841|gb|EEE82388.1| predicted protein [Populus trichocarpa]

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/687 (65%), Positives = 522/687 (75%), Gaps = 18/687 (2%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L+ELQYLS+Y+NNLNG IPFQL++L KVR+LDLG N+LE PDWS FS MPSL +L  
Sbjct: 142 ISQLTELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSNFS-MPSLEYLSF 200

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           +LNELT EFP FI  CRNLT+LDLSLNK +G IPE ++TNLGKLE LNL  N FQG LS 
Sbjct: 201 FLNELTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSS 260

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+SKLSNL ++ L  N  SG IP  IGS+S LQ+VELF+NSF G IPSS+G+LK+L+ LD
Sbjct: 261 NISKLSNLKNISLQNNLLSGQIPESIGSISGLQIVELFSNSFQGNIPSSIGKLKHLEKLD 320

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           LR+NALN TIPPELGLCTNL+YLALA NQL G LPLSLSNLSK+ D+GLS+N LSGEIS 
Sbjct: 321 LRINALNSTIPPELGLCTNLTYLALADNQLRGELPLSLSNLSKIADMGLSENSLSGEISP 380

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
            LI NWTEL SLQ+QNN F GNIPPEIG LT LQYLFLY N FSG IP EI  L  L +L
Sbjct: 381 TLISNWTELISLQVQNNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSL 440

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLSGNQLSG +PP LWNLTNL  L LFSNN++G IP E+G++  L   D+NTNQLHGELP
Sbjct: 441 DLSGNQLSGPLPPPLWNLTNLQILNLFSNNITGKIPSEVGNLTMLQILDLNTNQLHGELP 500

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
             IS +  L   ++F NN SGSIP DFGK+ PSL   SFSNNSFSGELP EL        
Sbjct: 501 LTISDITSLTSINLFGNNLSGSIPSDFGKYMPSLAYASFSNNSFSGELPPELW------- 553

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
                     SLP CLRNCS L RVR + N+F GNIT AFGV P L F+ LS NQF+GEI
Sbjct: 554 ----------SLPTCLRNCSKLTRVRLEENRFAGNITNAFGVLPNLVFVALSDNQFIGEI 603

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
           SPDWGEC+NL+NLQ+D NRISG IPAELG L +L VLSL SNELTG+IP +LG L KLF 
Sbjct: 604 SPDWGECKNLTNLQMDGNRISGEIPAELGKLPQLQVLSLGSNELTGRIPAELGNLSKLFM 663

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           LNLSNN LTGE+P+S+++L  L  LDLS+NKLTG++ +ELG ++KL SL+LSHN+L+GEI
Sbjct: 664 LNLSNNQLTGEVPQSLTSLKGLNSLDLSDNKLTGNISKELGSYEKLSSLDLSHNNLAGEI 723

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
           P  LGNL  LQY+LDLSSNSLSG IPQ   KL+ LE LN+S N LSGRIP SLSSM+SL 
Sbjct: 724 PFELGNLNSLQYLLDLSSNSLSGAIPQNFAKLSRLETLNVSHNHLSGRIPDSLSSMLSLS 783

Query: 661 SVDFSDNELTELAVTMRVTDKCDVFSF 687
           S DFS NELT    T  V       SF
Sbjct: 784 SFDFSYNELTGPIPTGSVFKNASARSF 810

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480046|ref|XP_002270822.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/671 (64%), Positives = 531/671 (79%), Gaps = 2/671 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +G L+EL YLS YDN   G IP+Q+++L+K+ YLDLG N+L++PDWSKFSSMP LT L  
Sbjct: 142 IGGLTELLYLSFYDNYFVGTIPYQITNLQKMWYLDLGSNYLQSPDWSKFSSMPLLTRLSF 201

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             NEL  EFP FI  C NLTYLDL+ N+L+G IPE +F NLGKLE+L+LT+N F+G LS 
Sbjct: 202 NYNELASEFPGFITDCWNLTYLDLADNQLTGAIPESVFGNLGKLEFLSLTDNSFRGPLSS 261

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+S+LS L  LRL TN+FSGPIP +IG++S+LQ++E++NNSF GQIPSS+GQL+ LQ LD
Sbjct: 262 NISRLSKLQKLRLGTNQFSGPIPEEIGTLSDLQMLEMYNNSFEGQIPSSIGQLRKLQILD 321

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           L+ NALN +IP ELG CTNL++LA+AVN LSG +PLS +N +K++ LGLSDN LSGEIS 
Sbjct: 322 LKSNALNSSIPSELGSCTNLTFLAVAVNSLSGVIPLSFTNFNKISALGLSDNSLSGEISP 381

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
           + I NWTEL SLQIQNN+F G IP EIGLL KL YLFL  N F+G IPSEI  L  L  L
Sbjct: 382 DFITNWTELTSLQIQNNNFTGKIPSEIGLLEKLNYLFLCNNGFNGSIPSEIGNLKELLKL 441

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLS NQ SG IPP  WNLT L  LQL+ NNLSGT+PPEIG++ SL   D++TN+L GELP
Sbjct: 442 DLSKNQFSGPIPPVEWNLTKLELLQLYENNLSGTVPPEIGNLTSLKVLDLSTNKLLGELP 501

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           E +S L  L K SVFTNNFSG+IP + GK S  L++VSF+NNSFSGELP  LC+GFAL+ 
Sbjct: 502 ETLSILNNLEKLSVFTNNFSGTIPIELGKNSLKLMHVSFANNSFSGELPPGLCNGFALQH 561

Query: 421 LTVN-GNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
           LTVN GNNFTG LP CLRNC+ L RVR +GNQFTG+I+KAFGVHP L F+ LSGN+F GE
Sbjct: 562 LTVNGGNNFTGPLPDCLRNCTGLTRVRLEGNQFTGDISKAFGVHPSLVFLSLSGNRFSGE 621

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           +SP+WGEC+ L++LQ+D N+ISG IPAELG L++L VLSLDSNEL+G+IP  L  L +LF
Sbjct: 622 LSPEWGECQKLTSLQVDGNKISGVIPAELGKLSQLRVLSLDSNELSGQIPVALANLSQLF 681

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
           NL+L  N+LTG+IP+ I  LT L YL+L+ N  +G +P+ELG  ++LLSLNL +NDLSGE
Sbjct: 682 NLSLGKNNLTGDIPQFIGTLTNLNYLNLAGNNFSGSIPKELGNCERLLSLNLGNNDLSGE 741

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IPS LGNL  LQY+LDLSSNSLSGTIP +LGKL SLE LN+S N L+GRI +SLS M+SL
Sbjct: 742 IPSELGNLLTLQYLLDLSSNSLSGTIPSDLGKLASLENLNVSHNHLTGRI-SSLSGMVSL 800

Query: 660 RSVDFSDNELT 670
            S DFS NELT
Sbjct: 801 NSSDFSYNELT 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480048|ref|XP_003632391.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/671 (65%), Positives = 533/671 (79%), Gaps = 2/671 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +G L+EL YLS YDN L G IP+Q+++L+K+ YLDLG N+L++PDWSKFSSMP LT L  
Sbjct: 142 IGGLTELLYLSFYDNYLVGTIPYQITNLQKMWYLDLGSNYLQSPDWSKFSSMPLLTRLSF 201

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             NEL  EFP FI  CRNLTYLDL+ N+L+G IPE +F+NLGKLE+LN T+N FQG LS 
Sbjct: 202 NYNELVSEFPGFITDCRNLTYLDLAQNQLTGAIPESVFSNLGKLEFLNFTDNSFQGPLSS 261

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           N+S+LS L +LRL  N+FSG IP +IG++S+L+++E++NNSF GQIPSS+GQL+ LQ LD
Sbjct: 262 NISRLSKLQNLRLGRNQFSGSIPEEIGTLSDLEILEMYNNSFEGQIPSSIGQLRKLQILD 321

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           ++ NALN  IP ELG CTNL++L+LAVN L G +P S +NL+K+++LGLSDNFLSGEIS 
Sbjct: 322 IQRNALNSKIPSELGSCTNLTFLSLAVNSLYGVIPSSFTNLNKISELGLSDNFLSGEISP 381

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             I NWTEL SLQ+QNNSF G IP EIGLL KL YLFLY N  SG IPSEI  L  L  L
Sbjct: 382 YFITNWTELISLQVQNNSFTGKIPSEIGLLEKLNYLFLYNNMLSGAIPSEIGNLKDLLQL 441

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLS NQLSG IP   WNLT L +L L+ NNL+GTIPPEIG++ SL   D+NTN+LHGELP
Sbjct: 442 DLSQNQLSGPIPVVEWNLTQLTTLHLYENNLTGTIPPEIGNLTSLTVLDLNTNKLHGELP 501

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           E +S L  L + SVFTNNFSG+IP + GK S +L+ VSFSNNSFSGELP  LC+G AL+ 
Sbjct: 502 ETLSLLNNLERLSVFTNNFSGTIPTELGKNSLNLMYVSFSNNSFSGELPPGLCNGLALQY 561

Query: 421 LTVN-GNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
           LTVN GNNFTG LP CLRNC+ L RVR +GNQFTG I++AFGVHP L F+ LSGN+F GE
Sbjct: 562 LTVNGGNNFTGPLPDCLRNCTGLTRVRLEGNQFTGGISEAFGVHPSLVFLSLSGNRFSGE 621

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           ISP+WGEC+ L++LQ+D N+ISG IPAELG L++LGVLSLDSNEL+G+IP +L  L +LF
Sbjct: 622 ISPEWGECQKLTSLQVDGNKISGEIPAELGKLSQLGVLSLDSNELSGQIPVELANLSQLF 681

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
           NL+LS NHLTG+IP+ I  LT L YL+L+ N  +G +P+ELG  ++LLSLNL +N+LSGE
Sbjct: 682 NLSLSKNHLTGDIPQFIGTLTNLNYLNLAGNYFSGSIPKELGNCERLLSLNLGNNNLSGE 741

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IPS LGNL  LQY+LDLSSNSLSGTIP +LGKL SLE LN+S N L+GRIP SLS MISL
Sbjct: 742 IPSELGNLLALQYLLDLSSNSLSGTIPSDLGKLASLENLNVSHNHLTGRIP-SLSGMISL 800

Query: 660 RSVDFSDNELT 670
            S DFS NELT
Sbjct: 801 NSSDFSYNELT 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570668|ref|XP_003553507.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/676 (63%), Positives = 516/676 (76%), Gaps = 1/676 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN-FLETPDWSKFSSMPSLTHLG 59
           +G L ELQYLS Y+NNLNG IP+QL +L KV Y+DLG N F+  PDWS++S MPSLT LG
Sbjct: 144 LGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQYSGMPSLTRLG 203

Query: 60  LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
           L+LN  T EFPSFIL C+NL+YLD+S N  +G IPE +++NL KLEYLNLT     GKLS
Sbjct: 204 LHLNVFTGEFPSFILECQNLSYLDISQNHWTGTIPESMYSNLPKLEYLNLTNTGLIGKLS 263

Query: 120 PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
           PN+S LSNL +LR+  N F+G +P +IG +S LQ++EL N    G+IPSSLGQL+ L  L
Sbjct: 264 PNLSMLSNLKELRMGNNMFNGSVPTEIGLISGLQILELNNIFAHGKIPSSLGQLRELWRL 323

Query: 180 DLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEIS 239
           DL +N LN TIP ELGLC NLS+L+LAVN LSG LPLSL+NL+K+++LGLSDN  SG+ S
Sbjct: 324 DLSINFLNSTIPSELGLCANLSFLSLAVNSLSGPLPLSLANLAKISELGLSDNSFSGQFS 383

Query: 240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299
           A+LI NWT+L SLQ+QNNSF G IPP+IGLL K+ +L+LY N FSGPIP EI  L  +  
Sbjct: 384 ASLISNWTQLISLQVQNNSFTGRIPPQIGLLKKINFLYLYNNQFSGPIPVEIGNLKEMIE 443

Query: 300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359
           LDLS NQ SG IP TLWNLTN+  L LF N+LSGTIP +IG++ SL  FDVNTN LHGEL
Sbjct: 444 LDLSQNQFSGPIPLTLWNLTNIQVLNLFFNDLSGTIPMDIGNLTSLQIFDVNTNNLHGEL 503

Query: 360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALE 419
           PE I++L  L KFSVFTNNF+GS+P +FGK +PSL ++  SNNSFSGELP  LCS   L 
Sbjct: 504 PETIAQLTALKKFSVFTNNFTGSLPREFGKSNPSLTHIYLSNNSFSGELPPGLCSDGKLT 563

Query: 420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
            L VN N+F+G LP  LRNCS+L R+R D NQFTGNIT +FGV   L FI LSGNQ VGE
Sbjct: 564 ILAVNNNSFSGPLPKSLRNCSSLIRIRLDDNQFTGNITDSFGVLSNLVFISLSGNQLVGE 623

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           +SP+WGEC NL+ +++  N++SG IP+ELG L +LG LSL SNE TG IP ++G L +LF
Sbjct: 624 LSPEWGECVNLTEMEMGSNKLSGKIPSELGKLIQLGHLSLHSNEFTGNIPPEIGNLSQLF 683

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
            LNLSNNHL+GEIPKS   L +L +LDLSNN   G +P+EL     LLS+NLSHN+LSGE
Sbjct: 684 KLNLSNNHLSGEIPKSYGRLAKLNFLDLSNNNFIGSIPRELSDCKNLLSMNLSHNNLSGE 743

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IP  LGNLF LQ +LDLSSNSLSG +PQ LGKL SLEILN+S N LSG IP S SSMISL
Sbjct: 744 IPYELGNLFSLQILLDLSSNSLSGDLPQNLGKLASLEILNVSHNHLSGPIPQSFSSMISL 803

Query: 660 RSVDFSDNELTELAVT 675
           +S+DFS N L+ L  T
Sbjct: 804 QSIDFSHNNLSGLIPT 819

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503631|ref|XP_003520610.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/742 (57%), Positives = 527/742 (71%), Gaps = 16/742 (2%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN-FLETPDWSKFSSMPSLTHLG 59
           +G L ELQYLS Y+NNLNG IP+QL +L KV +LDLG N F+  PDWS++S MPSLTHL 
Sbjct: 145 LGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWHLDLGSNYFITPPDWSQYSGMPSLTHLA 204

Query: 60  LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
           L LN  T  FPSFIL C NLTYLD+S N  +G+IPE +++NL KLEYLNLT +  +GKLS
Sbjct: 205 LDLNVFTGGFPSFILECHNLTYLDISQNNWNGIIPESMYSNLAKLEYLNLTNSGLKGKLS 264

Query: 120 PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
           PN+SKLSNL +LR+  N F+G +P +IG +S LQ++EL N S  G+IPSSLGQL+ L  L
Sbjct: 265 PNLSKLSNLKELRIGNNMFNGSVPTEIGFVSGLQILELNNISAHGKIPSSLGQLRELWRL 324

Query: 180 DLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEIS 239
           DL +N  N TIP ELGLCTNL++L+LA N LSG LP+SL+NL+K+++LGLSDN  SG+ S
Sbjct: 325 DLSINFFNSTIPSELGLCTNLTFLSLAGNNLSGPLPMSLANLAKISELGLSDNSFSGQFS 384

Query: 240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299
           A LI NWT++ SLQ QNN F GNIPP+IGLL K+ YL+LY N FSG IP EI  L  ++ 
Sbjct: 385 APLITNWTQIISLQFQNNKFTGNIPPQIGLLKKINYLYLYNNLFSGSIPVEIGNLKEMKE 444

Query: 300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359
           LDLS N+ SG IP TLWNLTN+  + LF N  SGTIP +I ++ SL  FDVNTN L+GEL
Sbjct: 445 LDLSQNRFSGPIPSTLWNLTNIQVMNLFFNEFSGTIPMDIENLTSLEIFDVNTNNLYGEL 504

Query: 360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALE 419
           PE I +L  L  FSVFTN F+GSIP + GK +P L N+  SNNSFSGELP +LCS   L 
Sbjct: 505 PETIVQLPVLRYFSVFTNKFTGSIPRELGKNNP-LTNLYLSNNSFSGELPPDLCSDGKLV 563

Query: 420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
            L VN N+F+G LP  LRNCS+L RVR D NQ TGNIT AFGV P L+FI LS N+ VGE
Sbjct: 564 ILAVNNNSFSGPLPKSLRNCSSLTRVRLDNNQLTGNITDAFGVLPDLNFISLSRNKLVGE 623

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           +S +WGEC NL+ + ++ N++SG IP+EL  L +L  LSL SNE TG IP+++G L  LF
Sbjct: 624 LSREWGECVNLTRMDMENNKLSGKIPSELSKLNKLRYLSLHSNEFTGNIPSEIGNLGLLF 683

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
             NLS+NH +GEIPKS   L +L +LDLSNN  +G +P+ELG  ++LLSLNLSHN+LSGE
Sbjct: 684 MFNLSSNHFSGEIPKSYGRLAQLNFLDLSNNNFSGSIPRELGDCNRLLSLNLSHNNLSGE 743

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
           IP  LGNLF LQ MLDLSSNSLSG IPQ L KL SLE+LN+S N L+G IP SLS MISL
Sbjct: 744 IPFELGNLFPLQIMLDLSSNSLSGAIPQGLEKLASLEVLNVSHNHLTGTIPQSLSDMISL 803

Query: 660 RSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ 719
           +S+DFS N L+    T RV        F     E  +G       + L GE+        
Sbjct: 804 QSIDFSYNNLSGSIPTGRV--------FQTATSEAYVGN------SGLCGEVKGLTCSKV 849

Query: 720 RLPPPTGQLAEAVVLTINVALA 741
             P  +G + E V+L + + + 
Sbjct: 850 FSPDKSGGINEKVLLGVTIPVC 871

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	785
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.838	0.587	0.352	5.1e-123
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.722	0.542	0.369	5.5e-113
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.847	0.532	0.344	5.1e-104
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.785	0.548	0.346	1.2e-102
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.812	0.579	0.341	1.5e-102
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.791	0.563	0.341	8.4e-102
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.845	0.530	0.331	1.1e-101
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.759	0.522	0.346	2e-96
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.774	0.558	0.357	3e-95
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.755	0.522	0.338	1.8e-93

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 5.1e-123, Sum P(2) = 5.1e-123
 Identities = 234/664 (35%), Positives = 351/664 (52%)

Query:     7 LQYLSVYDNNLNGAIP-FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNEL 65
             ++ L++ +  + G    F   SL  + Y+DL  N L      +F ++  L +  L  N L
Sbjct:    79 IEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHL 138

Query:    66 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKL 125
             T E    +   +NLT L L  N L+ +IP  L  N+  +  L L++N+  G +  ++  L
Sbjct:   139 TGEISPSLGNLKNLTVLYLHQNYLTSVIPSEL-GNMESMTDLALSQNKLTGSIPSSLGNL 197

Query:   126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
              NL+ L L  N  +G IP ++G+M ++  + L  N  TG IPS+LG LKNL  L L  N 
Sbjct:   198 KNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENY 257

Query:   186 LNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGN 245
             L   IPPE+G   +++ LAL+ N+                       +L+G I   L GN
Sbjct:   258 LTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKL-GN 316

Query:   246 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGN 305
                +  L++ NN   G+IP  +G L  L  L+LY N  +G IP E+  + S+ +L L+ N
Sbjct:   317 IESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNN 376

Query:   306 QLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISR 365
             +L+G+IP +                  G IP E+G+M S++  D++ N+L G +P++   
Sbjct:   377 KLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGN 436

Query:   366 LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNG 425
               KL    +  N+ SG+IP      S  L  +    N+F+G  P  +C G  L+ ++++ 
Sbjct:   437 FTKLESLYLRVNHLSGAIPPGVAN-SSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDY 495

Query:   426 NNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWG 485
             N+  G +P  LR+C +L R RF GN+FTG+I +AFG++P L+FI  S N+F GEIS +W 
Sbjct:   496 NHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWE 555

Query:   486 ECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
             +   L  L +  N I+G IP E+ N+T+L  L L +N L G++P  +G L  L  L L+ 
Sbjct:   556 KSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNG 615

Query:   546 NHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLG 605
             N L+G +P  +S LT L  LDLS+N  + ++PQ    F K            G IP  L 
Sbjct:   616 NQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLS 674

Query:   606 NLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFS 665
              L  L   LDLS N L G IP +L  L SL+ L+LS N LSG IP +   MI+L +VD S
Sbjct:   675 KLTQLT-QLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDIS 733

Query:   666 DNEL 669
             +N+L
Sbjct:   734 NNKL 737

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
 Identities = 211/571 (36%), Positives = 297/571 (52%)

Query:   100 NLGKLEYLNLTENQFQGKLSP-NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158
             +LG +  LNLT    +G       S L NL  + L+ N+FSG I    G  S L+  +L 
Sbjct:    91 SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLS 150

Query:   159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXX 218
              N   G+IP  LG L NL  L L  N LN +IP E+G  T ++ +A+  N          
Sbjct:   151 INQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query:   219 XXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 278
                            LSG I +  IGN   L  L +  N+  G IP   G L  +  L +
Sbjct:   211 GNLTKLVNLYLFINSLSGSIPSE-IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNM 269

Query:   279 YRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPE 338
             + N  SG IP EI  +T+L+ L L  N+L+G IP T                  G+IPPE
Sbjct:   270 FENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPE 329

Query:   339 IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVS 398
             +G M S++  +++ N+L G +P++  +L  L    +  N  SG IP      S  L  + 
Sbjct:   330 LGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN-STELTVLQ 388

Query:   399 FSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITK 458
                N+F+G LP  +C G  LE LT++ N+F G +P  LR+C +L RVRF GN F+G+I++
Sbjct:   389 LDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISE 448

Query:   459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLS 518
             AFGV+P L+FI LS N F G++S +W + + L    L  N I+G IP E+ N+T+L  L 
Sbjct:   449 AFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLD 508

Query:   519 LDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQ 578
             L SN +TG++P  +  + ++  L L+ N L+G+IP  I  LT L YLDLS+N+ + ++P 
Sbjct:   509 LSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPP 568

Query:   579 ELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEIL 638
              L    +              IP  L  L  LQ MLDLS N L G I  +   L +LE L
Sbjct:   569 TLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQ-MLDLSYNQLDGEISSQFRSLQNLERL 627

Query:   639 NLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
             +LS N LSG+IP S   M++L  VD S N L
Sbjct:   628 DLSHNNLSGQIPPSFKDMLALTHVDVSHNNL 658

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 231/670 (34%), Positives = 333/670 (49%)

Query:     1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
             +G+L  LQ L++    L G IP QL  L +V+ L L  N+LE P  ++  +   LT    
Sbjct:   163 LGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTA 222

Query:    61 YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
               N L    P+ +    NL  L+L+ N L+G IP +L   + +L+YL+L  NQ QG +  
Sbjct:   223 AENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQL-GEMSQLQYLSLMANQLQGLIPK 281

Query:   121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNLQHL 179
             +++ L NL  L L+ N  +G IP +  +MS L  + L NN  +G +P S+     NL+ L
Sbjct:   282 SLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQL 341

Query:   180 DLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS 239
              L    L+  IP EL  C +L  L L+ N                         L G +S
Sbjct:   342 VLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS 401

Query:   240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299
              + I N T L+ L + +N+  G +P EI  L KL+ LFLY N FSG IP EI   TSL+ 
Sbjct:   402 PS-ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKM 460

Query:   300 LDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGEL 359
             +D+ GN   G IPP+                  G +P  +G+   L   D+  NQL G +
Sbjct:   461 IDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query:   360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALE 419
             P +   L  L +  ++ N+  G++P        +L  ++ S+N  +G + H LC   +  
Sbjct:   521 PSSFGFLKGLEQLMLYNNSLQGNLPDSLISLR-NLTRINLSHNRLNGTI-HPLCGSSSYL 578

Query:   420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
                V  N F   +P  L N  NL+R+R   NQ TG I    G    L  + +S N   G 
Sbjct:   579 SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGT 638

Query:   480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
             I      C+ L+++ L+ N +SG IP  LG L++LG L L SN+    +PT+L    KL 
Sbjct:   639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLL 698

Query:   540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGE 599
              L+L  N L G IP+ I NL  L  L+L  N+ +G +PQ +G+  K            GE
Sbjct:   699 VLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGE 758

Query:   600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
             IP  +G L  LQ  LDLS N+ +G IP  +G L+ LE L+LS NQL+G +P S+  M SL
Sbjct:   759 IPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSL 818

Query:   660 RSVDFSDNEL 669
               ++ S N L
Sbjct:   819 GYLNVSFNNL 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
 Identities = 216/624 (34%), Positives = 305/624 (48%)

Query:    50 SSMPSLTHLGLYLNELTLE---FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
             SS  SL    L L+ + L     PS I    NL YL+L+ N L+G IP  +  N  KLE 
Sbjct:    80 SSSNSLVVTSLDLSSMNLSGIVSPS-IGGLVNLVYLNLAYNALTGDIPREI-GNCSKLEV 137

Query:   107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
             + L  NQF G +   ++KLS L    +  NK SGP+P +IG + NL+ +  + N+ TG +
Sbjct:   138 MFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPL 197

Query:   167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXX 226
             P SLG L  L       N  +  IP E+G C NL  L LA N                  
Sbjct:   198 PRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQE 257

Query:   227 XXXXXXFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286
                     SG I  + IGN T LE+L +  NS +G IP EIG +  L+ L+LY+N  +G 
Sbjct:   258 VILWQNKFSGFIPKD-IGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGT 316

Query:   287 IPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLV 346
             IP E+ KL+ +  +D S N LSG IP                    G IP E+  + +L 
Sbjct:   317 IPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLA 376

Query:   347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
               D++ N L G +P     L  + +  +F N+ SG IP   G +SP  + V FS N  SG
Sbjct:   377 KLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWV-VDFSENQLSG 435

Query:   407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRL 466
             ++P  +C    L  L +  N   G++P  +  C +L ++R  GN+ TG           L
Sbjct:   436 KIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNL 495

Query:   467 DFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
               I L  N+F G + P+ G C+ L  L L  N+ S  +P E+  L+ L   ++ SN LTG
Sbjct:   496 SAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTG 555

Query:   527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKX 586
              IP+++     L  L+LS N   G +P  + +L +L  L LS N+ +G++P  +G     
Sbjct:   556 PIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHL 615

Query:   587 XXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
                        G IP  LG L  LQ  ++LS N  SG IP E+G L  L  L+L+ N LS
Sbjct:   616 TELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLS 675

Query:   647 GRIPASLSSMISLRSVDFSDNELT 670
             G IP +  ++ SL   +FS N LT
Sbjct:   676 GEIPTTFENLSSLLGCNFSYNNLT 699

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
 Identities = 224/655 (34%), Positives = 330/655 (50%)

Query:    46 WSKFSSMP------SLTHL----GLYLNELTLEFPSFILTCR--NLTYLDLSLNKLSGLI 93
             W++  S P      + THL     + LN + L      L C+   L  L++S N +SG I
Sbjct:    48 WNQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPI 107

Query:    94 PERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQ 153
             P+ L +    LE L+L  N+F G +   ++ +  L  L L  N   G IP  IG++S+LQ
Sbjct:   108 PQDL-SLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQ 166

Query:   154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXX 213
              + +++N+ TG IP S+ +L+ L+ +    N  +  IP E+  C +L  L LA N     
Sbjct:   167 ELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGS 226

Query:   214 XXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 273
                                 LSGEI  + +GN + LE L +  N F G+IP EIG LTK+
Sbjct:   227 LPKQLEKLQNLTDLILWQNRLSGEIPPS-VGNISRLEVLALHENYFTGSIPREIGKLTKM 285

Query:   274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXG 333
             + L+LY N  +G IP EI  L     +D S NQL+G IP                    G
Sbjct:   286 KRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLG 345

Query:   334 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPS 393
              IP E+G +  L   D++ N+L+G +P+ +  L  L    +F N   G IP   G +S  
Sbjct:   346 PIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNF 405

Query:   394 LINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT 453
              + +  S NS SG +P   C    L  L++  N  +G++P  L+ C +L ++    NQ T
Sbjct:   406 SV-LDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLT 464

Query:   454 GNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
             G++  + F +   L  + L  N   G IS D G+ +NL  L+L  N  +G IP E+GNLT
Sbjct:   465 GSLPIELFNLQ-NLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLT 523

Query:   513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
             ++   ++ SN+LTG IP +LG  V +  L+LS N  +G I + +  L  L  L LS+N+L
Sbjct:   524 KIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRL 583

Query:   573 TGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL 632
             TG++P   G   +              IP  LG L  LQ  L++S N+LSGTIP  LG L
Sbjct:   584 TGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNL 643

Query:   633 TSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSF 687
               LEIL L+ N+LSG IPAS+ +++SL   + S+N L        V  + D  +F
Sbjct:   644 QMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNF 698

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 213/624 (34%), Positives = 315/624 (50%)

Query:    47 SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
             S +SS P +  L L    L+ +    I    +L  LDLS N LSG IP+ +  N   LE 
Sbjct:    67 SNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEI-GNCSSLEI 125

Query:   107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
             L L  NQF G++   + KL +L +L +  N+ SG +P +IG++ +L  +  ++N+ +GQ+
Sbjct:   126 LKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQL 185

Query:   167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXX 226
             P S+G LK L       N ++ ++P E+G C +L  L LA NQ                 
Sbjct:   186 PRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQ 245

Query:   227 XXXXXXFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286
                     SG I    I N T LE+L +  N  +G IP E+G L  L++L+LYRN  +G 
Sbjct:   246 VILWENEFSGFIPRE-ISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGT 304

Query:   287 IPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLV 346
             IP EI  L+    +D S N L+G IP                    GTIP E+ ++ +L 
Sbjct:   305 IPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLS 364

Query:   347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
               D++ N L G +P     L  L    +F N+ SG+IP   G +S   + +  S+N  SG
Sbjct:   365 KLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWV-LDMSDNHLSG 423

Query:   407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRL 466
              +P  LC    +  L +  NN +G++P  +  C  L ++R   N   G           +
Sbjct:   424 RIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNV 483

Query:   467 DFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
               I L  N+F G I  + G C  L  LQL  N  +G +P E+G L++LG L++ SN+LTG
Sbjct:   484 TAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTG 543

Query:   527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKX 586
             ++P+++     L  L++  N+ +G +P  + +L +L  L LSNN L+G +P  LG   + 
Sbjct:   544 EVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRL 603

Query:   587 XXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
                        G IP  LG+L  LQ  L+LS N L+G IP EL  L  LE L L+ N LS
Sbjct:   604 TELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLS 663

Query:   647 GRIPASLSSMISLRSVDFSDNELT 670
             G IP+S +++ SL   +FS N LT
Sbjct:   664 GEIPSSFANLSSLLGYNFSYNSLT 687

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 222/669 (33%), Positives = 331/669 (49%)

Query:     2 GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             G+L  LQ L++    L G IP +   L +++ L L  N LE P  ++  +  SL      
Sbjct:   165 GNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAA 224

Query:    62 LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
              N L    P+ +   +NL  L+L  N  SG IP +L  +L  ++YLNL  NQ QG +   
Sbjct:   225 FNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPKR 283

Query:   122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNLQHLD 180
             +++L+NL  L L++N  +G I  +   M+ L+ + L  N  +G +P ++     +L+ L 
Sbjct:   284 LTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLF 343

Query:   181 LRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISA 240
             L    L+  IP E+  C +L  L L+ N                         L G +S+
Sbjct:   344 LSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS 403

Query:   241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             + I N T L+   + +N+  G +P EIG L KL+ ++LY N FSG +P EI   T L+ +
Sbjct:   404 S-ISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEI 462

Query:   301 DLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELP 360
             D  GN+LSG IP +                  G IP  +G+   +   D+  NQL G +P
Sbjct:   463 DWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIP 522

Query:   361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
              +   L  L  F ++ N+  G++P        +L  ++FS+N F+G +   LC   +   
Sbjct:   523 SSFGFLTALELFMIYNNSLQGNLPDSLINLK-NLTRINFSSNKFNGSIS-PLCGSSSYLS 580

Query:   421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
               V  N F G +P  L   +NL+R+R   NQFTG I + FG    L  + +S N   G I
Sbjct:   581 FDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGII 640

Query:   481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
               + G C+ L+++ L+ N +SG IP  LG L  LG L L SN+  G +PT++  L  +  
Sbjct:   641 PVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILT 700

Query:   541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEI 600
             L L  N L G IP+ I NL  L  L+L  N+L+G +P  +G+  K            GEI
Sbjct:   701 LFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEI 760

Query:   601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
             P  +G L  LQ  LDLS N+ +G IP  +  L  LE L+LS NQL G +P  +  M SL 
Sbjct:   761 PVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLG 820

Query:   661 SVDFSDNEL 669
              ++ S N L
Sbjct:   821 YLNLSYNNL 829

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 209/603 (34%), Positives = 315/603 (52%)

Query:    50 SSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109
             SS   +T + +    L L  P  +   R+L  L +S   L+G +PE L   LG L+ L+L
Sbjct:    78 SSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLG-LKVLDL 136

Query:   110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSS 169
             + N   G +  ++SKL NL  L L +N+ +G IP DI   S L+ + LF+N  TG IP+ 
Sbjct:   137 SSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTE 196

Query:   170 LGQLKNLQHLDLRMNA-LNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXX 228
             LG+L  L+ + +  N  ++  IP E+G C+NL+ L LA                      
Sbjct:   197 LGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLS 256

Query:   229 XXXXFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288
                  +SGEI ++L GN +EL  L +  NS  G+IP EIG LTKL+ LFL++N+  G IP
Sbjct:   257 IYTTMISGEIPSDL-GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIP 315

Query:   289 SEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAF 348
              EI   ++L+ +DLS N LSG+IP +                  G+IP  I + +SLV  
Sbjct:   316 EEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQL 375

Query:   349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 408
              ++ NQ+ G +P  +  L KL  F  ++N   GSIP      +  L  +  S NS +G +
Sbjct:   376 QLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCT-DLQALDLSRNSLTGTI 434

Query:   409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
             P  L     L +L +  N+ +G +P  + NCS+L R+R   N+ TG I    G   +++F
Sbjct:   435 PSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINF 494

Query:   469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKI 528
             +  S N+  G++  + G C  L  + L  N + G +P  + +L+ L VL + +N+ +GKI
Sbjct:   495 LDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKI 554

Query:   529 PTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXX 588
             P  LG+LV L  L LS N  +G IP S+   + L  LDL +N+L+G++P ELG  +    
Sbjct:   555 PASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEI 614

Query:   589 XXXXXXXX-XGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG 647
                       G+IPS + +L  L  +LDLS N L G +   L  + +L  LN+S N  SG
Sbjct:   615 ALNLSSNRLTGKIPSKIASLNKLS-ILDLSHNMLEGDLAP-LANIENLVSLNISYNSFSG 672

Query:   648 RIP 650
              +P
Sbjct:   673 YLP 675

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
 Identities = 219/613 (35%), Positives = 302/613 (49%)

Query:    58 LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117
             L L  + L+ +  S I   ++L  LDLSLN  SGL+P  L  N   LEYL+L+ N F G+
Sbjct:    81 LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTL-GNCTSLEYLDLSNNDFSGE 139

Query:   118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQ 177
             +      L NL  L L  N  SG IP  +G +  L  + +  N+ +G IP  LG    L+
Sbjct:   140 VPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLE 199

Query:   178 HLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGE 237
             +L L  N LN ++P  L L  NL  L ++ N                           G 
Sbjct:   200 YLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGG 259

Query:   238 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSL 297
             +    IGN + L SL +   +  G IP  +G+L K+  + L  N  SG IP E+   +SL
Sbjct:   260 VPPE-IGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSL 318

Query:   298 ENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHG 357
             E L L+ NQL G IPP                   G IP  I  + SL    V  N L G
Sbjct:   319 ETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTG 378

Query:   358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFA 417
             ELP  +++L  L K ++F N F G IP   G  + SL  V    N F+GE+P  LC G  
Sbjct:   379 ELPVEVTQLKHLKKLTLFNNGFYGDIPMSLG-LNRSLEEVDLLGNRFTGEIPPHLCHGQK 437

Query:   418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
             L    +  N   G +PA +R C  L RVR + N+ +G +   F     L ++ L  N F 
Sbjct:   438 LRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSG-VLPEFPESLSLSYVNLGSNSFE 496

Query:   478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
             G I    G C+NL  + L +N+++G IP ELGNL  LG+L+L  N L G +P+ L    +
Sbjct:   497 GSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCAR 556

Query:   538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXX 597
             L   ++ +N L G IP S  +   L+ L LS+N   G +PQ L   D+            
Sbjct:   557 LLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFG 616

Query:   598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMI 657
             G+IPS++G L  L+Y LDLS+N  +G IP  LG L +LE LN+S N+L+G +   L S+ 
Sbjct:   617 GKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSV-LQSLK 675

Query:   658 SLRSVDFSDNELT 670
             SL  VD S N+ T
Sbjct:   676 SLNQVDVSYNQFT 688

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
 Identities = 203/600 (33%), Positives = 302/600 (50%)

Query:    55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
             +T + +   +L L FP  I +  +L  L +S   L+G I   +  +  +L  ++L+ N  
Sbjct:    84 VTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEI-GDCSELIVIDLSSNSL 142

Query:   115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLK 174
              G++  ++ KL NL +L L +N  +G IP ++G   +L+ +E+F+N  +  +P  LG++ 
Sbjct:   143 VGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKIS 202

Query:   175 NLQHLDLRMNA-LNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXF 233
              L+ +    N+ L+  IP E+G C NL  L LA  +                        
Sbjct:   203 TLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTM 262

Query:   234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK 293
             LSGEI   L GN +EL +L + +N   G +P E+G L  L+ + L++NN  GPIP EI  
Sbjct:   263 LSGEIPKEL-GNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGF 321

Query:   294 LTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTN 353
             + SL  +DLS N  SGTIP +                  G+IP  + +   LV F ++ N
Sbjct:   322 MKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDAN 381

Query:   354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
             Q+ G +P  I  L +LN F  + N   G+IP +      +L  +  S N  +G LP  L 
Sbjct:   382 QISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQ-NLQALDLSQNYLTGSLPAGLF 440

Query:   414 SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSG 473
                 L +L +  N  +G +P  + NC++L R+R   N+ TG I K  G    L F+ LS 
Sbjct:   441 QLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSE 500

Query:   474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
             N   G +  +   CR L  L L  N + G +P  L +LT+L VL + SN+LTGKIP  LG
Sbjct:   501 NNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLG 560

Query:   534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRF-DKXXXXXXX 592
              L+ L  L LS N   GEIP S+ + T L  LDLS+N ++G +P+EL    D        
Sbjct:   561 HLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLS 620

Query:   593 XXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPAS 652
                  G IP  +  L  L  +LD+S N LSG +   L  L +L  LN+S N+ SG +P S
Sbjct:   621 WNSLDGFIPERISALNRLS-VLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDS 678

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	785
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-106
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-84
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-56
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  347 bits (893), Expect = e-106
 Identities = 218/583 (37%), Positives = 307/583 (52%), Gaps = 59/583 (10%)

Query: 74  LTCRN---LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS-NLI 129
           +TC N   +  +DLS   +SG I   +F  L  ++ +NL+ NQ  G +  ++   S +L 
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121

Query: 130 DLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT 189
            L L+ N F+G IP   GS+ NL+ ++L NN  +G+IP+ +G   +L+ LDL  N L   
Sbjct: 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 190 IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTEL 249
           IP  L   T+L +L LA NQL G +P  L  +  L  + L  N LSGEI    IG  T L
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSL 238

Query: 250 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG 309
             L +  N+  G IP  +G L  LQYLFLY+N  SGPIP  I  L  L +LDLS N LSG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 310 TIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKL 369
            IP  +  L NL  L LFSNN +G IP                          ++ L +L
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIP------------------------VALTSLPRL 334

Query: 370 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFT 429
               +++N FSG IP + GK + +L  +  S N+ +GE+P  LCS   L +L +  N+  
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 430 GSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRN 489
           G +P  L  C +L RVR   N F+G +   F   P + F+ +S N   G I+    +  +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
           L  L L RN+  GG+P                         D     +L NL+LS N  +
Sbjct: 454 LQMLSLARNKFFGGLP-------------------------DSFGSKRLENLDLSRNQFS 488

Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFV 609
           G +P+ + +L+EL  L LS NKL+G++P EL    KL+SL+LSHN LSG+IP++   + V
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

Query: 610 LQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPAS 652
           L   LDLS N LSG IP+ LG + SL  +N+S N L G +P++
Sbjct: 549 LS-QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  287 bits (735), Expect = 5e-84
 Identities = 195/549 (35%), Positives = 267/549 (48%), Gaps = 78/549 (14%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           S L+YL++ +NN  G+IP               G            S+P+L  L L  N 
Sbjct: 118 SSLRYLNLSNNNFTGSIP--------------RG------------SIPNLETLDLSNNM 151

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
           L+ E P+ I +  +L  LDL  N L G IP  L TNL  LE+L                 
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLT---------------- 194

Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
                   LA+N+  G IP ++G M +L+ + L  N+ +G+IP  +G L +L HLDL  N
Sbjct: 195 --------LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG 244
            L   IP  LG   NL YL L  N+LSG +P S+ +L KL  L LSDN LSGEI   L+ 
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVI 305

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSG 304
               LE L + +N+F G IP  +  L +LQ L L+ N FSG IP  + K  +L  LDLS 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 305 NQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS 364
           N L+G IP  L +  NL  L LFSN+L G IP  +G+  SL    +  N   GELP   +
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 365 RLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVN 424
           +L  +    +  NN  G I        PSL  +S + N F G LP               
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDM-PSLQMLSLARNKFFGGLP--------------- 469

Query: 425 GNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDW 484
             +  GS          L  +    NQF+G + +  G    L  ++LS N+  GEI  + 
Sbjct: 470 --DSFGS--------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 485 GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLS 544
             C+ L +L L  N++SG IPA    +  L  L L  N+L+G+IP +LG +  L  +N+S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 545 NNHLTGEIP 553
           +NHL G +P
Sbjct: 580 HNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  229 bits (585), Expect = 2e-63
 Identities = 146/386 (37%), Positives = 212/386 (54%), Gaps = 7/386 (1%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +G +  L+++ +  NNL+G IP+++  L  + +LDL  N L  P  S   ++ +L +L L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           Y N+L+   P  I + + L  LDLS N LSG IPE L   L  LE L+L  N F GK+  
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPV 326

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            ++ L  L  L+L +NKFSG IP ++G  +NL +++L  N+ TG+IP  L    NL  L 
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           L  N+L   IP  LG C +L  + L  N  SG LP   + L  +  L +S+N L G I++
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 241 NLIGNW--TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298
                W    L+ L +  N F G +P   G   +L+ L L RN FSG +P ++  L+ L 
Sbjct: 447 R---KWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 299 NLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGE 358
            L LS N+LSG IP  L +   L+SL L  N LSG IP     M  L   D++ NQL GE
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 359 LPENISRLVKLNKFSVFTNNFSGSIP 384
           +P+N+  +  L + ++  N+  GS+P
Sbjct: 563 IPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  228 bits (584), Expect = 3e-63
 Identities = 154/433 (35%), Positives = 228/433 (52%), Gaps = 4/433 (0%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +G  S L+ L +  N L G IP  L++L  + +L L  N L      +   M SL  + L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             N L+ E P  I    +L +LDL  N L+G IP  L  NL  L+YL L +N+  G + P
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPP 278

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           ++  L  LI L L+ N  SG IP  +  + NL+++ LF+N+FTG+IP +L  L  LQ L 
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           L  N  +  IP  LG   NL+ L L+ N L+G +P  L +   L  L L  N L GEI  
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
           +L G    L  +++Q+NSF G +P E   L  + +L +  NN  G I S    + SL+ L
Sbjct: 399 SL-GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
            L+ N+  G + P  +    L +L L  N  SG +P ++GS++ L+   ++ N+L GE+P
Sbjct: 458 SLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           + +S   KL    +  N  SG IP  F +  P L  +  S N  SGE+P  L +  +L +
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEM-PVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 421 LTVNGNNFTGSLP 433
           + ++ N+  GSLP
Sbjct: 576 VNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  208 bits (532), Expect = 2e-56
 Identities = 135/358 (37%), Positives = 192/358 (53%), Gaps = 11/358 (3%)

Query: 317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV-KLNKFSVF 375
           N + ++S+ L   N+SG I   I  +  +   +++ NQL G +P++I      L   ++ 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 376 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPAC 435
            NNF+GSIP       P+L  +  SNN  SGE+P+++ S  +L+ L + GN   G +P  
Sbjct: 127 NNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 436 LRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495
           L N ++L  +    NQ  G I +  G    L +I L  N   GEI  + G   +L++L L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 496 DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS 555
             N ++G IP+ LGNL  L  L L  N+L+G IP  +  L KL +L+LS+N L+GEIP+ 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLG---NLFVLQY 612
           +  L  L  L L +N  TG +P  L    +L  L L  N  SGEIP NLG   NL V   
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV--- 360

Query: 613 MLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT 670
            LDLS+N+L+G IP+ L    +L  L L  N L G IP SL +  SLR V   DN  +
Sbjct: 361 -LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 90.6 bits (225), Expect = 9e-19
 Identities = 41/89 (46%), Positives = 55/89 (61%)

Query: 517 LSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDV 576
           L LD+  L G IP D+ KL  L ++NLS N + G IP S+ ++T L  LDLS N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 577 PQELGRFDKLLSLNLSHNDLSGEIPSNLG 605
           P+ LG+   L  LNL+ N LSG +P+ LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.6 bits (212), Expect = 3e-17
 Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 26/128 (20%)

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           L L N  L G IP  IS L  L  ++LS N + G++P  LG    L  L+LS+N      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF---- 478

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
                                +G+IP+ LG+LTSL ILNL+ N LSGR+PA+L   +  R
Sbjct: 479 ---------------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Query: 661 -SVDFSDN 667
            S +F+DN
Sbjct: 518 ASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 7e-14
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 2/95 (2%)

Query: 285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMAS 344
           G IP++I KL  L++++LSGN + G IPP+L ++T+L  L L  N+ +G+IP  +G + S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 345 LVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNN 378
           L   ++N N L G +P  +  RL+    F+ FT+N
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN-FTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 7e-14
 Identities = 33/79 (41%), Positives = 45/79 (56%)

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
           G I  D  + R+L ++ L  N I G IP  LG++T L VL L  N   G IP  LG+L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 538 LFNLNLSNNHLTGEIPKSI 556
           L  LNL+ N L+G +P ++
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 5e-13
 Identities = 39/110 (35%), Positives = 59/110 (53%)

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
           + L N    G IP+ + +L++LQ ++L  N++   IPP LG  T+L  L L+ N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 264
           P SL  L+ L  L L+ N LSG + A L G      S    +N+ +  IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 7e-13
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
           +  G W  ++ L + N    G IP +I  L  LQ + L  N+  G IP  +  +TSLE L
Sbjct: 413 STKGKWF-IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIG 340
           DLS N  +G+IP +L  LT+L  L L  N+LSG +P  +G
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 589 LNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGR 648
           L L +  L G IP+++  L  LQ  ++LS NS+ G IP  LG +TSLE+L+LS N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 649 IPASLSSMISLRSVDFSDNELT 670
           IP SL  + SLR ++ + N L+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 35/89 (39%), Positives = 56/89 (62%)

Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
           L L     +G +  ++SKL +L  + L+ N   G IP  +GS+++L++++L  NSF G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 167 PSSLGQLKNLQHLDLRMNALNYTIPPELG 195
           P SLGQL +L+ L+L  N+L+  +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 9e-12
 Identities = 36/79 (45%), Positives = 47/79 (59%)

Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN 199
           G IP DI  + +LQ + L  NS  G IP SLG + +L+ LDL  N+ N +IP  LG  T+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 200 LSYLALAVNQLSGGLPLSL 218
           L  L L  N LSG +P +L
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 4e-11
 Identities = 36/92 (39%), Positives = 50/92 (54%)

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
           +  L LD   + G IP ++  L  L  ++L  N + G IP  LG +  L  L+LS N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELG 581
           G IP+S+  LT L  L+L+ N L+G VP  LG
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 31/92 (33%), Positives = 51/92 (55%)

Query: 297 LENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
           ++ L L    L G IP  +  L +L S+ L  N++ G IPP +GS+ SL   D++ N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 357 GELPENISRLVKLNKFSVFTNNFSGSIPGDFG 388
           G +PE++ +L  L   ++  N+ SG +P   G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 9/207 (4%)

Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
           L  + L+ N+    IS    E  NL++L LD N I+   P      + L  L L  N++ 
Sbjct: 95  LPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 526 GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
             +P+ L  L  L NL+LS N L+ ++PK +SNL+ L  LDLS NK++ D+P E+     
Sbjct: 154 -SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210

Query: 586 LLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQL 645
           L  L+LS+N +  E+ S+L NL  L   L+LS+N L   +P+ +G L++LE L+LS NQ+
Sbjct: 211 LEELDLSNNSII-ELLSSLSNLKNLSG-LELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267

Query: 646 SGRIPASLSSMISLRSVDFSDNELTEL 672
           S    +SL S+ +LR +D S N L+  
Sbjct: 268 S--SISSLGSLTNLRELDLSGNSLSNA 292

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
           L  I LSGN   G I P  G   +L  L L  N  +G IP  LG LT L +L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 526 GKIPTDLG-KLVKLFNLNLSNN 546
           G++P  LG +L+   + N ++N
Sbjct: 504 GRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 9/116 (7%)

Query: 82  LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
           L L    L G IP  + + L  L+ +NL+ N  +G + P++  +++L  L L+ N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
           IP  +G +++L+++ L  NS +G++P++LG         L   + N+T     GLC
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL------LHRASFNFTDNA--GLC 529

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.1 bits (140), Expect = 9e-09
 Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
            NL  L L  N+I   +P+ L NL  L  L L  N+L+  +P  L  L  L NL+LS N 
Sbjct: 140 SNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 548 LTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNL 607
           ++ ++P  I  L+ L  LDLSNN +  ++   L     L  L LS+N    ++P ++GNL
Sbjct: 198 IS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNL 254

Query: 608 FVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLS 654
             L+  LDLS+N +S      LG LT+L  L+LS N LS  +P    
Sbjct: 255 SNLET-LDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
              ++   L G +P +IS+L  L   ++  N+  G+IP   G  + SL  +  S NSF+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNG 480

Query: 407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGN 455
            +P  L    +L  L +NGN+ +G +PA L     L+R  F+   FT N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFN---FTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 8/198 (4%)

Query: 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND 226
            S L +L NL  LDL  N +    P    L +NL  L L+ N++   LP  L NL  L +
Sbjct: 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKN 167

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286
           L LS N LS      L+ N + L +L +  N    ++PPEI LL+ L+ L L  N+    
Sbjct: 168 LDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-E 223

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346
           + S +  L +L  L+LS N+L   +P ++ NL+NL +L L +N +S      +GS+ +L 
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLR 280

Query: 347 AFDVNTNQLHGELPENIS 364
             D++ N L   LP    
Sbjct: 281 ELDLSGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 33/298 (11%)

Query: 325 QLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP 384
           +L  N  S T+     S++ L++ D+ +      L  + + L  L   S+  N       
Sbjct: 49  RLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSN 108

Query: 385 GDFGKFSPSLINVSFSNNSFSGELPHELC-SGFALEELTVNGNNFTGSLPACLRNCSNLN 443
                   +L ++   NN+ + ++P  +      L+EL ++ N    SLP+ LRN  NL 
Sbjct: 109 ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLK 166

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGG 503
            +    N  +                         ++        NL+NL L  N+IS  
Sbjct: 167 NLDLSFNDLS-------------------------DLPKLLSNLSNLNNLDLSGNKISD- 200

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELA 563
           +P E+  L+ L  L L +N +  ++ + L  L  L  L LSNN L  ++P+SI NL+ L 
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258

Query: 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSL 621
            LDLSNN+++  +   LG    L  L+LS N LS  +P     L +L+ +L+L     
Sbjct: 259 TLDLSNNQIS-SIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 381 GSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCS 440
           G IP D  K    L +++ S NS  G +P  L S  +LE L ++ N+F GS+P  L   +
Sbjct: 432 GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 441 NLNRVRFDGNQFTGNITKAFGVHP 464
           +L  +  +GN  +G +  A G   
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 14/190 (7%)

Query: 489 NLSNLQLDRNRISGGIPAEL--GNLTRLGVLSLDSNELTGKIP--TDLGKLV--KLFNLN 542
           N+S L LD   I    P+ L   NL  L +  + S +L  ++   T L  ++   L  L 
Sbjct: 726 NISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784

Query: 543 LSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPS 602
           LS+     E+P SI NL +L +L++ N      +P  +   + L SL+LS        P 
Sbjct: 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPD 843

Query: 603 NLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSV 662
              N+      L+LS   +   +P  + K ++L  L+++      R+  ++S +  L +V
Sbjct: 844 ISTNI----SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898

Query: 663 DFSD-NELTE 671
           DFSD   LTE
Sbjct: 899 DFSDCGALTE 908

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 79/255 (30%), Positives = 121/255 (47%), Gaps = 19/255 (7%)

Query: 184 NALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
           +     +P  L    +L  L+ +    S     +L NL  L  L L+ N L   IS   +
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNISE--L 112

Query: 244 GNWTELESLQIQNNSFMGNIPPEIGLLT-KLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
              T L SL + NN+   +IPP IGLL   L+ L L  N     +PS +  L +L+NLDL
Sbjct: 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 362
           S N LS  +P  L NL+NL +L L  N +S  +PPEI  +++L   D++ N +  EL  +
Sbjct: 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227

Query: 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVS---FSNNSFSGELPHELCSGFALE 419
           +S L  L+   +  N             +   +++S    S+ S  G L +       L 
Sbjct: 228 LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTN-------LR 280

Query: 420 ELTVNGNNFTGSLPA 434
           EL ++GN+ + +LP 
Sbjct: 281 ELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
           NL +L L  NR++         L  L VL L  N LT   P     L  L +L+LS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 9e-05
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
           L ++     G +P  +    +L  +   GN   GNI  + G    L+ + LS N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELG 509
               G+  +L  L L+ N +SG +PA LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 31/103 (30%), Positives = 46/103 (44%)

Query: 10  LSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEF 69
           L + +  L G IP  +S LR ++ ++L GN +         S+ SL  L L  N      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 70  PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
           P  +    +L  L+L+ N LSG +P  L   L      N T+N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 30/57 (52%)

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
           +L+LSNN LT     +   L  L  LDLS N LT   P+       L SL+LS N+L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 4/126 (3%)

Query: 551 EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVL 610
           +  +++ NL  L  LDL+ N+L  +   EL     L SL+L +N+++ +IP  +G L   
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141

Query: 611 QYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT 670
              LDLS N +  ++P  L  L +L+ L+LS N LS  +P  LS++ +L ++D S N+++
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 671 ELAVTM 676
           +L   +
Sbjct: 200 DLPPEI 205

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +L+ L  L + +NN+    P        ++ LDL  N +E+       ++P+L +L L  
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSF 172

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+L+ + P  +    NL  LDLS NK+S L PE    +   LE L+L+ N    +L  ++
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS--ALEELDLSNNSII-ELLSSL 228

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           S L NL  L L+ NK        IG++SNL+ ++L NN       SSLG L NL+ LDL 
Sbjct: 229 SNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLS 285

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLG 228
            N+L+    P + L   L  L L +      L L L+++   N++ 
Sbjct: 286 GNSLS-NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 612 YMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
             LDLS+N L+         L +L++L+LS N L+   P + S + SLRS+D S N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 24/60 (40%), Positives = 29/60 (48%)

Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
            L  L L +N LT         L  L  L+LS N+LT   P++ S L  L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 32/197 (16%)

Query: 508 LGNLTRLGVLSLDSNELTGKIPT---DLGKLVKLFNLNLSNNHLTGEI-PKSISNLTELA 563
           L     L  L L  N L          L +   L  L L+NN L           L +L 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 564 Y----LDLSNNKLTG----DVPQELGRFDKLLSLNLSHNDLSGE-IPSNLGNLFVLQYM- 613
                L L  N+L G     + + L     L  LNL++N +    I +    L     + 
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 614 -LDLSSNS--------LSGTIPQELGKLTSLEILNLSRNQLSGRI-----PASLSSMISL 659
            LDL++N         L+ T+      L SLE+LNL  N L+         A LS  ISL
Sbjct: 197 VLDLNNNGLTDEGASALAETLAS----LKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 660 RSVDFSDNELTELAVTM 676
            ++  S N++T+     
Sbjct: 253 LTLSLSCNDITDDGAKD 269

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	785
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
PLN03150	623	hypothetical protein; Provisional	98.98
PLN03150	623	hypothetical protein; Provisional	98.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	98.77
KOG0192	362	consensus Tyrosine kinase specific for activated (	98.72
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	98.56
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.54
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	98.53
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.52
PHA02988	283	hypothetical protein; Provisional	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	98.45
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.42
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.42
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.36
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.35
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.35
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	98.35
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.35
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.33
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	98.32
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.32
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.31
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.3
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.3
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.29
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	98.29
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.28
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.27
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	98.27
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.26
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	98.26
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.25
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.25
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	98.25
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	98.24
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	98.24
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	98.24
KOG4721	904	consensus Serine/threonine protein kinase, contain	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.22
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	98.21
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	98.21
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.21
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	98.21
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.21
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.2
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.2
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.19
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	98.18
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.18
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	98.17
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.17
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.17
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.17
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	98.16
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.15
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	98.15
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	98.15
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.15
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.15
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	98.15
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.14
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.14
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.13
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.13
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	98.13
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.13
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.12
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	98.11
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.11
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.11
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	98.11
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	98.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.11
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.1
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.1
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	98.1
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.09
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.09
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	98.09
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.09
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.09
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.09
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.08
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.07
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.05
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.05
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	98.04
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.04
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	98.04
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.03
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	98.03
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.01
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	98.01
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.01
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.01
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	98.01
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	97.99
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	97.98
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	97.97
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	97.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	97.96
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	97.96
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	97.96
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	97.95
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	97.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	97.94
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	97.94
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	97.94
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	97.92
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	97.92
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.89
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	97.89
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	97.89
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	97.89
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	97.89
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	97.88
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	97.87
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	97.86
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	97.86
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	97.85
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	97.85
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	97.85
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	97.84
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	97.84
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	97.84
PHA02882	294	putative serine/threonine kinase; Provisional	97.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.84
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	97.83
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	97.83
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.82
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	97.82
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	97.8
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	97.8
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	97.79
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	97.79
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.79
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.79
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	97.79
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	97.78
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	97.78
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	97.78
PTZ00283	496	serine/threonine protein kinase; Provisional	97.78
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	97.77
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	97.77
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	97.77
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	97.76
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	97.76
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	97.76
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	97.76
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	97.75
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	97.75
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	97.75
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	97.75
PLN00034	353	mitogen-activated protein kinase kinase; Provision	97.73
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	97.73
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	97.73
PLN00181	793	protein SPA1-RELATED; Provisional	97.73
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	97.73
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	97.73
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	97.72
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	97.72
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	97.71
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	97.71
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.7
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	97.69
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	97.68
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	97.68
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	97.67
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	97.66
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	97.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.65
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	97.64
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	97.64
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	97.64
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	97.63
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	97.63
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	97.63
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	97.63
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	97.62
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	97.62
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	97.62
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	97.61
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	97.6
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	97.6
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	97.6
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.58
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	97.58
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	97.58
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	97.57
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	97.57
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	97.56
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.56
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	97.56
PTZ00267	478	NIMA-related protein kinase; Provisional	97.56
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	97.54
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	97.54
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	97.54
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	97.53
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	97.53
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	97.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.53
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	97.52
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	97.52
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	97.52
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	97.52
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	97.51
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
KOG0596	677	consensus Dual specificity; serine/threonine and t	97.51
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	97.51
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	97.5
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	97.49
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	97.49
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	97.47
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	97.46
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	97.46
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	97.46
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	97.44
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.44
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	97.43
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	97.43
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	97.42
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	97.4
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	97.39
KOG4341	483	consensus F-box protein containing LRR [General fu	97.39
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	97.38
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	97.38
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	97.37
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	97.36
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	97.36
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	97.36
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	97.35
PLN00009	294	cyclin-dependent kinase A; Provisional	97.35
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.34
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	97.34
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	97.33
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	97.33
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	97.33
PTZ00284	467	protein kinase; Provisional	97.32
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	97.32
PTZ00266	1021	NIMA-related protein kinase; Provisional	97.32
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	97.31
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	97.31
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	97.31
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	97.3
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	97.3
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	97.3
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	97.29
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	97.29
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	97.28
KOG0581	364	consensus Mitogen-activated protein kinase kinase	97.28
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	97.27
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	97.27
PHA03212	391	serine/threonine kinase US3; Provisional	97.27
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	97.26
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	97.26
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	97.26
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	97.25
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	97.25
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	97.24
KOG0198	313	consensus MEKK and related serine/threonine protei	97.24
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	97.24
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	97.23
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	97.23
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.22
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	97.22
PHA03209	357	serine/threonine kinase US3; Provisional	97.22
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	97.22
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	97.21
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	97.2
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	97.2
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	97.18
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.18
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	97.16
KOG0582	516	consensus Ste20-like serine/threonine protein kina	97.15
PTZ00263	329	protein kinase A catalytic subunit; Provisional	97.14
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	97.14
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	97.14
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	97.13
PHA03207	392	serine/threonine kinase US3; Provisional	97.12
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	97.12
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	97.11
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	97.1
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	97.09
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	97.09
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	97.08
PTZ00024	335	cyclin-dependent protein kinase; Provisional	97.07
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	97.07
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	97.07
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	97.07
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	97.06
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	97.05
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	97.03
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	97.03
PHA03211	461	serine/threonine kinase US3; Provisional	97.03
KOG4341	483	consensus F-box protein containing LRR [General fu	97.02
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	97.02
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	97.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	96.99
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	96.94
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	96.93
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	96.93
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	96.91
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	96.9
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	96.88
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	96.88
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	96.87
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	96.85
PTZ00036	440	glycogen synthase kinase; Provisional	96.85
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	96.85
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	96.83
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	96.82
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	96.82
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	96.81
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	96.76
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	96.72
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	96.66
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	96.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.64
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	96.64
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.62
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	96.57
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	96.53
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	96.51
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	96.5
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	96.49
KOG0201	467	consensus Serine/threonine protein kinase [Signal	96.3
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	96.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.2
PHA03210	501	serine/threonine kinase US3; Provisional	96.2
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	96.19
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	96.14
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	96.11
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	96.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.07
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	95.68
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	95.62
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	95.47
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	95.42
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	95.35
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	95.15
KOG1989	738	consensus ARK protein kinase family [Signal transd	94.98
KOG0583	370	consensus Serine/threonine protein kinase [Signal	94.97
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	94.97
KOG0584	632	consensus Serine/threonine protein kinase [General	94.89
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	94.75
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	94.72
KOG0575	592	consensus Polo-like serine/threonine protein kinas	94.69
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	94.48
KOG0578	550	consensus p21-activated serine/threonine protein k	94.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.79
KOG0694	694	consensus Serine/threonine protein kinase [Signal	93.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.9
PLN03224	507	probable serine/threonine protein kinase; Provisio	92.77
KOG0589	426	consensus Serine/threonine protein kinase [General	92.19
smart00370	26	LRR Leucine-rich repeats, outliers.	91.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.56
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	91.22
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	91.15
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	91.02
smart00370	26	LRR Leucine-rich repeats, outliers.	90.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.92
KOG2052	513	consensus Activin A type IB receptor, serine/threo	90.85
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	90.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.78
KOG4308	478	consensus LRR-containing protein [Function unknown	90.54
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	90.0
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	89.99
KOG0595	429	consensus Serine/threonine-protein kinase involved	89.73
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	88.87
KOG4308	478	consensus LRR-containing protein [Function unknown	88.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.94
KOG0661	538	consensus MAPK related serine/threonine protein ki	87.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.78
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	87.22
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	86.51
KOG4717	864	consensus Serine/threonine protein kinase [Signal	85.08
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	84.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.01
KOG0598	357	consensus Ribosomal protein S6 kinase and related	82.51
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	81.35

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-72  Score=677.03  Aligned_cols=521  Identities=38%  Similarity=0.608  Sum_probs=323.5

Q ss_pred             CCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEE
Q 003931           53 PSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLR  132 (785)
Q Consensus        53 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  132 (785)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+.+.+|..+|..+++|++|+|++|.+++..|.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            35566666666665555555666666666666666665556655555666666666666666554443  3455666666


Q ss_pred             cCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc
Q 003931          133 LATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG  212 (785)
Q Consensus       133 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  212 (785)
                      +++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+++
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            66666665556556666666666666666655566666666666666666666665566666666666666666666665


Q ss_pred             CCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhcc
Q 003931          213 GLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE  292 (785)
Q Consensus       213 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  292 (785)
                      .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            66666666666666666666665555544 55666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEE
Q 003931          293 KLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKF  372 (785)
Q Consensus       293 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  372 (785)
                      ++++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.+++++|.+.+.+|..+..+.+++.+
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             EecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCcc
Q 003931          373 SVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF  452 (785)
Q Consensus       373 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  452 (785)
                      ++++|++.+.+|..+..+. +|+.+++++|++++..|..+..++.|+.+++++|.+.+.++..+..+++|+.|++++|++
T Consensus       386 ~l~~n~l~~~~p~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             ECcCCEecccCCHHHhCCC-CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence            6666666666665555544 666666666666666666666666666666666666666666566666666666666666


Q ss_pred             ccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCccc
Q 003931          453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL  532 (785)
Q Consensus       453 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  532 (785)
                      .+..|..++ .++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+
T Consensus       465 ~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  543 (968)
T PLN00113        465 FGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF  543 (968)
T ss_pred             eeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence            655555442 3566666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCc
Q 003931          533 GKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQ  578 (785)
Q Consensus       533 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  578 (785)
                      +.+++|+.|++++|++++.+|..+..+++|+++++++|++.+.+|.
T Consensus       544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            6666666666666666666666666666666666666666665553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.8e-60  Score=567.51  Aligned_cols=521  Identities=38%  Similarity=0.634  Sum_probs=495.4

Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCcccc-CCCCCcEEEcCCCcccccCCcCCCCCCCCCEE
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS-KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLV  155 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  155 (785)
                      .+++.|++++|.+++.++.. |..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            57999999999999877654 58999999999999999987777654 999999999999999988774  568999999


Q ss_pred             EcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931          156 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       156 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      ++++|.+.+..|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccC
Q 003931          236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL  315 (785)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  315 (785)
                      +.+|.. ++++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|.++.++++|+.|++++|.+.+.+|..+
T Consensus       226 ~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        226 GEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence            888887 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCcc
Q 003931          316 WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLI  395 (785)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~  395 (785)
                      .++++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+.+|+.+++++|++++.+|..+.... +++
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~  383 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLF  383 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998887765 899


Q ss_pred             EEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCe
Q 003931          396 NVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ  475 (785)
Q Consensus       396 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  475 (785)
                      .+++++|++.+.+|..+..+.+|+.|++++|.+++..|..+..++.|+.+++++|.+.+..+..+..+++|+.|++++|.
T Consensus       384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence            99999999999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             eeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcc
Q 003931          476 FVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS  555 (785)
Q Consensus       476 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~  555 (785)
                      +.+.+|..+ ..++|+.|++++|++++..|..+.++++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..
T Consensus       464 ~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        464 FFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             eeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence            998888765 4689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcc
Q 003931          556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN  603 (785)
Q Consensus       556 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  603 (785)
                      +..+++|+.|++++|++++.+|..+..++.|+.+++++|++.+.+|..
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            999999999999999999999999999999999999999999988853

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-40  Score=332.12  Aligned_cols=389  Identities=25%  Similarity=0.293  Sum_probs=325.3

Q ss_pred             CcEEEccCCCCCCCccccccCC--CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEEC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSL--RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL   84 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L   84 (785)
                      -+.|+.+++.+..+....+.++  ..-++|++++|++..++...|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3567778877765544444333  34566999999999999888999999999999999887 56776666778999999


Q ss_pred             CCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc
Q 003931           85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG  164 (785)
Q Consensus        85 s~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~  164 (785)
                      .+|.|+ .+...-+..++.|+.||||.|.|+.+....|..-.++++|+|++|+|+....+.|.++.+|.+|.|+.|+++.
T Consensus       133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  133 RHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             eccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence            999988 5555555888999999999999997777888888899999999999998888889999999999999999998


Q ss_pred             cCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccC
Q 003931          165 QIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG  244 (785)
Q Consensus       165 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  244 (785)
                      ..+..|.++++|+.|+|..|+|...-.-.|.++++|+.|.+..|.|.......|..+.++++|+|+.|+++ .+...++.
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lf  290 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLF  290 (873)
T ss_pred             cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhccccc
Confidence            77788888999999999999987555667889999999999999998888888999999999999999998 56666688


Q ss_pred             CCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEE
Q 003931          245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSL  324 (785)
Q Consensus       245 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  324 (785)
                      +++.|+.|++++|.|....++++..+++|++|+|++|+++...+.+|..+..|++|+|++|.+...-..+|..+.+|++|
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            89999999999999998888888899999999999999998888889999999999999999987777788889999999


Q ss_pred             EcccccccCCCCC---CCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcc
Q 003931          325 QLFSNNLSGTIPP---EIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS  400 (785)
Q Consensus       325 ~L~~n~l~~~~p~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~  400 (785)
                      ||++|.+++.+.+   .|.++++|+.|++.+|++.......|..+..|+.|++.+|.+...-|.+|..+  .|++|.+.
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~n  447 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVMN  447 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhhc
Confidence            9999998876654   36678889999999999887777788888888888888888887777777665  56666544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-40  Score=332.27  Aligned_cols=369  Identities=22%  Similarity=0.231  Sum_probs=337.1

Q ss_pred             CCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCC-CCCCcEEEccCCCCcccCCccCCCCCCccEEE
Q 003931            5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSS-MPSLTHLGLYLNELTLEFPSFILTCRNLTYLD   83 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   83 (785)
                      +..++|++++|.+..+-+..|.++++|+.+++.+|.++.|+.  |.. ..+|+.|+|.+|.|+.+..+.+..++.|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            356789999999999988889999999999999999998873  544 45699999999999999999999999999999


Q ss_pred             CCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931           84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT  163 (785)
Q Consensus        84 Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~  163 (785)
                      ||.|.|+ .+|...|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++...+..|..+++|+.|+|..|++.
T Consensus       156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            9999998 789888898899999999999999999999999999999999999999888889999999999999999998


Q ss_pred             ccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcccc
Q 003931          164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI  243 (785)
Q Consensus       164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  243 (785)
                      -.--.+|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..++.++++|+.|++++|.|. .+..+..
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~W  313 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSW  313 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchh
Confidence            555678999999999999999999888889999999999999999999888889999999999999999998 5544446


Q ss_pred             CCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCC---ccCcCCCC
Q 003931          244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP---PTLWNLTN  320 (785)
Q Consensus       244 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~  320 (785)
                      +.+++|+.|+|++|+++...+.+|..+.+|++|+|++|.++.....+|..+++|+.|||++|.++..+.   ..|.+++.
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            778999999999999999888999999999999999999998878889999999999999999987654   34888999


Q ss_pred             CCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCcc
Q 003931          321 LLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN  378 (785)
Q Consensus       321 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~  378 (785)
                      |+.|++.+|++..+...+|.++++|+.||+.+|.+...-|..|..+ .|++|.+..-.
T Consensus       394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            9999999999997777899999999999999999999999999998 88888765433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.4e-42  Score=332.60  Aligned_cols=476  Identities=27%  Similarity=0.388  Sum_probs=235.0

Q ss_pred             CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEc
Q 003931           78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL  157 (785)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  157 (785)
                      .|+.+.+++|.+. .+.+++ .++..|.+|++.+|++. ..|.+++.+..++.++.++|+++ .+|+.++++.+|+.++.
T Consensus        46 ~l~~lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDL-KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchh-hccHhh-hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            3444444444444 233333 44444444444444444 33444444444444444444444 34444444444444444


Q ss_pred             ccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccc
Q 003931          158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE  237 (785)
Q Consensus       158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  237 (785)
                      ++|.+. ..|++++.+..+..++..+|+++ ..|+.++.+.++..+++.+|++....|..+. ++.|++|+...|.+. .
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence            444444 23334444444444444444444 3444444444444444444444433222222 444444444444443 4


Q ss_pred             cCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhcc-CCCCCCEEECcCCcccccCCccCc
Q 003931          238 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE-KLTSLENLDLSGNQLSGTIPPTLW  316 (785)
Q Consensus       238 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~  316 (785)
                      +|++ ++.+.+|+-|++..|++. ..| +|..|+.|+++.+..|.+. .+|++.. +++++..||+.+|+++ ..|+.+.
T Consensus       198 lP~~-lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  198 LPPE-LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             CChh-hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence            4444 444444444444444444 233 4444444555555444444 3333332 4444445555555544 3444444


Q ss_pred             CCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccc-----cCCCcEE----EecCc---cc-cccC
Q 003931          317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISR-----LVKLNKF----SVFTN---NF-SGSI  383 (785)
Q Consensus       317 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l----~l~~n---~l-~~~~  383 (785)
                      -+.+|..||+++|.++ ..|.+++++ .|+.|.+.+|.+...-.+-+..     ++.|+.-    .++.-   .- .+..
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            4444445555555444 334444444 4444444444443110000000     0000000    00000   00 0000


Q ss_pred             C-cccc--cCCCCccEEEcccccceecCCccccCCCC---CcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC
Q 003931          384 P-GDFG--KFSPSLINVSFSNNSFSGELPHELCSGFA---LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT  457 (785)
Q Consensus       384 ~-~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  457 (785)
                      | ..+.  ....+.+.|++++-+++ .+|...+....   .+.++++.|++. .+|..+..+..+.+.-+..|+..+.++
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~  428 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP  428 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch
Confidence            0 0000  00113445555555555 33443333222   566667777666 344444444333333333333334566


Q ss_pred             cccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCC
Q 003931          458 KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK  537 (785)
Q Consensus       458 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  537 (785)
                      ..+..+++|+.|++++|-+. .+|..++.+..|+.++++.|++. ..|..+..+..++.+-.++|++....|..+.++.+
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence            66677777777777777665 55667777777888888887776 56766666666776666777777655556777788


Q ss_pred             CCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931          538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT  573 (785)
Q Consensus       538 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  573 (785)
                      |..||+.+|.+. .+|..++++++|++|++++|.+.
T Consensus       507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            888888888777 67777888888888888888776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.1e-41  Score=327.36  Aligned_cols=458  Identities=30%  Similarity=0.438  Sum_probs=297.8

Q ss_pred             ccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCC
Q 003931          170 LGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTEL  249 (785)
Q Consensus       170 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  249 (785)
                      +.++..|.+|++.+|++. ..|++++.+..++.++.++|+++ .+|..++++.+|..+++++|.+. +++++ ++.+..+
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~-i~~~~~l  139 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDS-IGRLLDL  139 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCch-HHHHhhh
Confidence            344444444444444443 34444444445555555555544 44455555555555555555555 44444 5556666


Q ss_pred             CEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccc
Q 003931          250 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN  329 (785)
Q Consensus       250 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (785)
                      +.++..+|+++ ..|.++..+.+|..+++.+|++....|..+. ++.|++||.-.|-+. .+|+.++.+.+|..|++..|
T Consensus       140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence            66666666665 4556666677777777777777644443333 777777777777666 56667777777777777777


Q ss_pred             cccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCC
Q 003931          330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP  409 (785)
Q Consensus       330 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  409 (785)
                      ++. ..| +|.+|..|.++.++.|++. .+                        |++..+..+++..||+.+|++. +.|
T Consensus       217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~l------------------------pae~~~~L~~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  217 KIR-FLP-EFPGCSLLKELHVGENQIE-ML------------------------PAEHLKHLNSLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             ccc-cCC-CCCccHHHHHHHhcccHHH-hh------------------------HHHHhcccccceeeeccccccc-cCc
Confidence            776 444 6677777777777766665 22                        2222222234555555555554 456


Q ss_pred             ccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCC--CCcEE-------EccCCee----
Q 003931          410 HELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHP--RLDFI-------RLSGNQF----  476 (785)
Q Consensus       410 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L-------~Ls~n~l----  476 (785)
                      .++|-+.+|++||+++|.+++ .|..++++ .|+.|.+.||.+.++-.+.+..-+  -|++|       .++...-    
T Consensus       269 de~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             hHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            667777777777777777763 45667777 777777777766543221111100  01111       0111000    


Q ss_pred             ----eeecccchhcccccceeccccceeeeccCcchhcccc---CCeeecccCccccCCCcccccCCCCCeecccCCccc
Q 003931          477 ----VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTR---LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT  549 (785)
Q Consensus       477 ----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  549 (785)
                          ....-+......+.+.|++++-+++ .+|+.......   ....+++.|++. .+|..+..+..+.+.-+..|+..
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence                0011122344567788888888887 45555444333   778899999998 67777777776665444444444


Q ss_pred             CcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCccc
Q 003931          550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL  629 (785)
Q Consensus       550 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~  629 (785)
                      +.+|..++.++.|+.|++++|-+. .+|..++.+..|+.+|+|.|++. .+|..+..+..++. +-.+.|++....|..+
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEt-llas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLET-LLASNNQIGSVDPSGL  501 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHH-HHhccccccccChHHh
Confidence            578888999999999999998887 68889999999999999999987 77887777776664 5566789988888889


Q ss_pred             ccCCCCceEeccCCceeeecCCcccccccceeeecCCCchh
Q 003931          630 GKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT  670 (785)
Q Consensus       630 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~  670 (785)
                      +.+.+|..||+.+|.+. .+|..+++++++++|++++|+|+
T Consensus       502 ~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999999999997 67888999999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=332.74  Aligned_cols=508  Identities=29%  Similarity=0.350  Sum_probs=368.2

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC
Q 003931            9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK   88 (785)
Q Consensus         9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~   88 (785)
                      .+|++.+++.- +|..+-....+..|+++.|.+...+.+...+...|++|++++|.+. ..|..+..+.+|+.|+++.|.
T Consensus         2 ~vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCcc-cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            36777777774 4444544455999999999877666555666777999999999886 678888899999999999999


Q ss_pred             CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCc
Q 003931           89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS  168 (785)
Q Consensus        89 i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  168 (785)
                      |. ..|... .++.+|++++|.+|.+. ..|..+..+++|++|+++.|.+. .+|.-+..++.++.+..++|....    
T Consensus        80 i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----  151 (1081)
T KOG0618|consen   80 IR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----  151 (1081)
T ss_pred             Hh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----
Confidence            98 678666 88999999999999887 78899999999999999999998 678888899999999999993322    


Q ss_pred             cccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCC
Q 003931          169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTE  248 (785)
Q Consensus       169 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  248 (785)
                      .++... ++++++..|.+.+.++..+..++.  .+++..|.+.   ...+..+.+|+.+....|++.. +    .-.-++
T Consensus       152 ~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~-l----~~~g~~  220 (1081)
T KOG0618|consen  152 RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSE-L----EISGPS  220 (1081)
T ss_pred             hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccce-E----EecCcc
Confidence            233333 889999999998888888877766  7999999887   2457788999999999999873 2    223578


Q ss_pred             CCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccc
Q 003931          249 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFS  328 (785)
Q Consensus       249 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  328 (785)
                      |+.|+.++|.+....+.  ....+|+++++++|+++ .+|+|++.+.+|+.++..+|+++ .+|..+....+|+.|.+..
T Consensus       221 l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  221 LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             hheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence            99999999998844332  23468999999999998 46799999999999999999996 7788888999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCEEEccCCcCccccCccc-cccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceec
Q 003931          329 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE  407 (785)
Q Consensus       329 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  407 (785)
                      |.+. .+|+....+..|++||+..|++. .+|+.+ .....                        ++..+..+.|++...
T Consensus       297 nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~------------------------~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  297 NELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA------------------------SLNTLNVSSNKLSTL  350 (1081)
T ss_pred             hhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH------------------------HHHHHhhhhcccccc
Confidence            9998 77788888999999999999887 344322 11111                        123333333333321


Q ss_pred             CCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcc
Q 003931          408 LPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGEC  487 (785)
Q Consensus       408 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  487 (785)
                      ....-.....|+.|.+.+|.++......+.+..+|+.|++++|++.......+.++..|+.|+||+|+++ .+|.....|
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence            1111122335666777777777666666667777777777777776666666666777777777777776 344666777


Q ss_pred             cccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEec
Q 003931          488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL  567 (785)
Q Consensus       488 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  567 (785)
                      +.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-..-++|++||+++|.-....-..|..+..+...++
T Consensus       430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheec
Confidence            77777777777776 445 6667777777777777775432211112256777777777633233334444555555554


Q ss_pred             CCC
Q 003931          568 SNN  570 (785)
Q Consensus       568 s~n  570 (785)
                      .-+
T Consensus       508 ~~~  510 (1081)
T KOG0618|consen  508 TLN  510 (1081)
T ss_pred             ccC
Confidence            443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-37  Score=327.58  Aligned_cols=507  Identities=26%  Similarity=0.329  Sum_probs=357.9

Q ss_pred             EEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCC
Q 003931           33 YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN  112 (785)
Q Consensus        33 ~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n  112 (785)
                      .+|++.+.+..|+...+..-. ++.|+++.|.+...+.+.+.+.-+|+.|++++|.+. ..|..+ ..+.+|+.|+++.|
T Consensus         2 ~vd~s~~~l~~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRN   78 (1081)
T ss_pred             CcccccccCcccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchh
Confidence            367777777777766555444 888888888876655566666767999999999887 678776 78888899999988


Q ss_pred             CCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCc
Q 003931          113 QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPP  192 (785)
Q Consensus       113 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  192 (785)
                      .|. ..|....++.+|+++.|..|.+. ..|..+..+++|+.|++++|.+. .+|..+..+..+.++..++|.....   
T Consensus        79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---  152 (1081)
T KOG0618|consen   79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---  152 (1081)
T ss_pred             hHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh---
Confidence            888 56677888888888888888887 67888888888888888888887 6677788888888888888832212   


Q ss_pred             cccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCC
Q 003931          193 ELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK  272 (785)
Q Consensus       193 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  272 (785)
                       ++... ++.+++..|.+.+.++.++..++.  .|+|++|.+. ...   +.++.+|+.+....|++....-    .-++
T Consensus       153 -lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~  220 (1081)
T KOG0618|consen  153 -LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPS  220 (1081)
T ss_pred             -hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcc
Confidence             22222 777788888887777777766665  6888888875 222   5667778888877777664321    2367


Q ss_pred             CcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccC
Q 003931          273 LQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNT  352 (785)
Q Consensus       273 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~  352 (785)
                      |+.|+.++|.++...+.  ..-.+|+++|+++|+++ .+|++++.+.+|+.++..+|.++ .+|..+....+|+.+++..
T Consensus       221 l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  221 LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             hheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence            77777777777633322  12356777777777777 44577777777777777777775 5666666667777777777


Q ss_pred             CcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCC-CCcEEEccCCCCccc
Q 003931          353 NQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFTGS  431 (785)
Q Consensus       353 n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~  431 (785)
                      |.+. -+|.....++.|+.|++                         ..|++....+..+.... .+..+..+.|.+...
T Consensus       297 nel~-yip~~le~~~sL~tLdL-------------------------~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  297 NELE-YIPPFLEGLKSLRTLDL-------------------------QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             hhhh-hCCCcccccceeeeeee-------------------------hhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            7665 33444444444444444                         44444422222222222 255666666666543


Q ss_pred             CCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhcc
Q 003931          432 LPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNL  511 (785)
Q Consensus       432 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  511 (785)
                      ....=...+.|+.|++.+|.++......+.++++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..+
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence            3222233567888899999998888888888899999999999888777777888889999999999988 567888889


Q ss_pred             ccCCeeecccCccccCCCcccccCCCCCeecccCCcccCc-CCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEe
Q 003931          512 TRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE-IPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLN  590 (785)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  590 (785)
                      ..|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|....+ ++|++||+++|.-....-..|..++.+...+
T Consensus       430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~  506 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD  506 (1081)
T ss_pred             hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhhee
Confidence            99999999998887 566 788888999999999988743 3443333 7889999998874333334455566666666


Q ss_pred             CCCC
Q 003931          591 LSHN  594 (785)
Q Consensus       591 ls~N  594 (785)
                      +.-|
T Consensus       507 i~~~  510 (1081)
T KOG0618|consen  507 ITLN  510 (1081)
T ss_pred             cccC
Confidence            5554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-33  Score=286.69  Aligned_cols=387  Identities=28%  Similarity=0.422  Sum_probs=282.5

Q ss_pred             cCCCCCCEEEcccCcCc-ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCC
Q 003931          171 GQLKNLQHLDLRMNALN-YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTEL  249 (785)
Q Consensus       171 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  249 (785)
                      +-++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++. .+... ++.++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhh
Confidence            34556677888888887 567777778888888888877776 66778888888888888888776 33333 5666777


Q ss_pred             CEEEeecCcCcc-cCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccc
Q 003931          250 ESLQIQNNSFMG-NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFS  328 (785)
Q Consensus       250 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  328 (785)
                      +.+.+.+|++.. -+|.++..+..|+.|+|++|++. ..|..+....++-.|+||+|++..+...-|.+++.|-.|||++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            777777776642 35666666777777777777776 5666666666777777777777633333455666666677777


Q ss_pred             ccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccce-ec
Q 003931          329 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS-GE  407 (785)
Q Consensus       329 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~  407 (785)
                      |++. .+|+.+..+..|+.|++++|.+.-.-   +..                     +..+. +|+.|.+++.+-+ ..
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ---LrQ---------------------LPsmt-sL~vLhms~TqRTl~N  213 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ---LRQ---------------------LPSMT-SLSVLHMSNTQRTLDN  213 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHH---Hhc---------------------Cccch-hhhhhhcccccchhhc
Confidence            6665 55555666666666666666553211   111                     11111 4555566554322 35


Q ss_pred             CCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcc
Q 003931          408 LPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGEC  487 (785)
Q Consensus       408 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  487 (785)
                      +|.++..+.+|..+|++.|++. ..|+++.++++|+.|++++|+|+.. ....+...+|+.|++|.|+++ ..|..+.++
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL  290 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKL  290 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence            7778888889999999999987 7889999999999999999999843 334455678999999999998 778899999


Q ss_pred             cccceeccccceee-eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEe
Q 003931          488 RNLSNLQLDRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLD  566 (785)
Q Consensus       488 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  566 (785)
                      ++|+.|++.+|++. ..+|..++.+..|+++..++|.+. ..|+.+..|..|+.|.|++|++. .+|+++.-++.|+.||
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLD  368 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLD  368 (1255)
T ss_pred             HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceee
Confidence            99999999999986 347888999999999999999987 88999999999999999999987 7899999999999999


Q ss_pred             cCCCcCccCCCccccccCCCcEEeCC
Q 003931          567 LSNNKLTGDVPQELGRFDKLLSLNLS  592 (785)
Q Consensus       567 Ls~n~l~~~~p~~l~~l~~L~~L~ls  592 (785)
                      +..|.-.-..|.--..-++++..++.
T Consensus       369 lreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  369 LRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             ccCCcCccCCCCcchhhhcceeeecc
Confidence            99987554444433334566665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-33  Score=286.85  Aligned_cols=342  Identities=29%  Similarity=0.412  Sum_probs=236.3

Q ss_pred             CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCc-ccCCccCCCCCCccEE
Q 003931            4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTCRNLTYL   82 (785)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L   82 (785)
                      ++.++.|.|...++. .+|..++.+.+|++|.+++|++..+. +.++.++.|+.+.+.+|++. .-+|..+..+..|+.|
T Consensus        31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l  108 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL  108 (1255)
T ss_pred             hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence            344444444444443 33444566666666666666655543 44666677777777766654 2345556667777777


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      |||+|++. ..|..+ ..-+++-+|+||+|+|..+....|.++..|-+||||+|++. .+|..+..+..|++|+|++|.+
T Consensus       109 DLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  109 DLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             ecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            77777776 567665 66677777777777777666666777777777777777776 4555666777777777777766


Q ss_pred             cccCCccccCCCCCCEEEcccCcCc-ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcc
Q 003931          163 TGQIPSSLGQLKNLQHLDLRMNALN-YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN  241 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  241 (785)
                      ....-..+..+++|++|.+++.+-+ ..+|..+..+.+|+.++++.|.+. ..|..+.++++|+.|+|++|.++ ++...
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~  263 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT  263 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence            5433334445566667777765533 356777777778888888888777 66777777888888888888877 44443


Q ss_pred             ccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccc-ccCChhccCCCCCCEEECcCCcccccCCccCcCCCC
Q 003931          242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFS-GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTN  320 (785)
Q Consensus       242 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  320 (785)
                       .+.+.+|++|+++.|+++ ..|.+++.+++|+.|++.+|+++ .-+|..++.+..|+.+..++|.+. ..|+.++.|+.
T Consensus       264 -~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  264 -EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             -HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence             566677888888888877 57777888888888888887764 246777788888888888877776 67778888888


Q ss_pred             CCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCc
Q 003931          321 LLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH  356 (785)
Q Consensus       321 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  356 (785)
                      |+.|.|+.|++. .+|+.+.-++.|+.||+..|.--
T Consensus       341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            888888888776 67777777888888888777643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=3.8e-28  Score=236.45  Aligned_cols=410  Identities=21%  Similarity=0.202  Sum_probs=276.4

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC-CCCcccCChhhhcCCCCCcEEE
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL-NKLSGLIPERLFTNLGKLEYLN  108 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~f~~l~~L~~L~  108 (785)
                      ....++|..|.|+.+++++|+.+++||.|||++|.|+.+.|.+|.++++|..|-+.+ |+|+ .+|...|.++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            456788888999999999999999999999999999988899999988887777766 8888 78989999999999999


Q ss_pred             CCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931          109 LTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       109 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      +.-|++......+|..+++|..|.+.+|.+..+.-..|..+.+++.+.+..|.+..     ..+++.+... +.      
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~-~a------  214 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD-LA------  214 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhH-Hh------
Confidence            99888888888889999999999999998885555588888899999888886541     2223222221 11      


Q ss_pred             cCCccccCCcccCeeeccccccccCCchhccCC-CCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccC
Q 003931          189 TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNL-SKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI  267 (785)
Q Consensus       189 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  267 (785)
                      ..|..++.........+.+.++....+..|... +.+..--.+.+...+..|...|..+++|++|+|++|+++.+-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            122234444444455555666655544444322 2222222233444457777778889999999999999998888889


Q ss_pred             cCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCC-CC--------
Q 003931          268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP-PE--------  338 (785)
Q Consensus       268 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~--------  338 (785)
                      .....+++|+|..|++...-...|.++..|+.|+|.+|+++...|.+|..+..|.+|++-.|.+-..-- .+        
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~  374 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK  374 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence            999999999999998877666778889999999999999998888889999999999988886642100 00        


Q ss_pred             -------CCCCCCCCEEEccCCcCc---cccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecC
Q 003931          339 -------IGSMASLVAFDVNTNQLH---GELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL  408 (785)
Q Consensus       339 -------~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  408 (785)
                             -+.-..++.++++...+.   ...|+..+            +.-++.-|..   . +.+.++.=..|+....+
T Consensus       375 ~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~------------~~~s~~cP~~---c-~c~~tVvRcSnk~lk~l  438 (498)
T KOG4237|consen  375 SVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELG------------CLTSSPCPPP---C-TCLDTVVRCSNKLLKLL  438 (498)
T ss_pred             CCCCCCCCCCCchhccccchhccccccccCCccccC------------CCCCCCCCCC---c-chhhhhHhhcccchhhc
Confidence                   011112233333332221   11111100            0000001110   0 12222221222222244


Q ss_pred             CccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCC
Q 003931          409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN  474 (785)
Q Consensus       409 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n  474 (785)
                      |..+.  ...+++++.+|.++.+ |..  .+.+| .+++++|++.......|.++++|.+|.|++|
T Consensus       439 p~~iP--~d~telyl~gn~~~~v-p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  439 PRGIP--VDVTELYLDGNAITSV-PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CCCCC--chhHHHhcccchhccc-CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            44332  3466788888888744 443  45667 8899999998888888999999999988875

>PLN03210 Resistant to P

Probab=99.91  E-value=3.9e-23  Score=249.29  Aligned_cols=317  Identities=22%  Similarity=0.267  Sum_probs=222.5

Q ss_pred             CCccccCCCCCCcEEEccCCC------CcccCCccCCCCC-CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcc
Q 003931           44 PDWSKFSSMPSLTHLGLYLNE------LTLEFPSFILTCR-NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG  116 (785)
Q Consensus        44 ~~~~~f~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~  116 (785)
                      +...+|.++++|+.|.+..+.      +....|..|..++ +|+.|++.++.+. .+|..+  ...+|++|++++|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            345678888888888886553      2234556666654 5888888888887 677654  5688888999888887 


Q ss_pred             cCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccC
Q 003931          117 KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL  196 (785)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  196 (785)
                      ..+..+..+++|+.|+|+++.....+| .++.+++|++|++++|.....+|..++++++|+.|++++|.....+|..+ +
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            466677888889999998876554566 47788889999998887666788888888889999988876555666655 6


Q ss_pred             CcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc-------cCCccCcC
Q 003931          197 CTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-------NIPPEIGL  269 (785)
Q Consensus       197 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~  269 (785)
                      +++|+.|++++|.....+|..   ..+|+.|++++|.+. .+|.. + .+++|++|.+.++....       ..+..+..
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc-c-cccccccccccccchhhccccccccchhhhhc
Confidence            788888888888655455532   357888888888876 66664 2 56778888777643211       11112233


Q ss_pred             CCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEE
Q 003931          270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFD  349 (785)
Q Consensus       270 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  349 (785)
                      +++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..   .++|+.|+
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~  852 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN  852 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence            4677888888877666777778888888888888775544666554 6777888888777654444432   35677777


Q ss_pred             ccCCcCccccCccccccCCCcEEEecCc
Q 003931          350 VNTNQLHGELPENISRLVKLNKFSVFTN  377 (785)
Q Consensus       350 l~~n~l~~~~~~~~~~l~~L~~l~l~~n  377 (785)
                      +++|.+. .+|..+..+++|+.|++.+|
T Consensus       853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        853 LSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence            7777776 45666666666666666554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=3.6e-27  Score=229.68  Aligned_cols=277  Identities=22%  Similarity=0.224  Sum_probs=190.5

Q ss_pred             CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC-CcccccCCcCCCCCCCCCEEE
Q 003931           78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT-NKFSGPIPGDIGSMSNLQLVE  156 (785)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~  156 (785)
                      .-..++|..|+|+ .||+.+|..+++|+.|||++|+|+.+.|.+|.++.+|..|-+.+ |+|+....+.|+++..|+.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4566777778777 67777778888888888888888877777888887777766655 777766666777888888888


Q ss_pred             cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc------------cCCchhccCCCCC
Q 003931          157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS------------GGLPLSLSNLSKL  224 (785)
Q Consensus       157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~------------~~~~~~l~~l~~L  224 (785)
                      +.-|++.....++|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+.            ...|..++.....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            8777777777777778888888888887776444446777777777777777621            1223344444445


Q ss_pred             CEEEccCCCCccccCccccCC-CCCCCEEEeecCcCcccCC-ccCcCCCCCcEEECcCccccccCChhccCCCCCCEEEC
Q 003931          225 NDLGLSDNFLSGEISANLIGN-WTELESLQIQNNSFMGNIP-PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL  302 (785)
Q Consensus       225 ~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  302 (785)
                      .-..+.+.++. .+++.-|.. +..+.+=-.+.+...+.-| ..|..+++|++|+|++|+++++-+.+|.....+++|.|
T Consensus       227 ~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            55555555554 333321221 1122111122232333333 24777888888888888888888888888888888888


Q ss_pred             cCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCc
Q 003931          303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH  356 (785)
Q Consensus       303 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  356 (785)
                      ..|++...-...|.++..|+.|+|++|+|+...|.+|..+..|.++.+-.|.+.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            888887666667788888888888888888777777888888888887777654

>PLN03210 Resistant to P

Probab=99.91  E-value=7.2e-23  Score=247.01  Aligned_cols=343  Identities=23%  Similarity=0.258  Sum_probs=267.8

Q ss_pred             CccccccCCCCCCEEeCCCCCCC------CCCccccCCCC-CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCccc
Q 003931           20 AIPFQLSSLRKVRYLDLGGNFLE------TPDWSKFSSMP-SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL   92 (785)
Q Consensus        20 ~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~f~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~   92 (785)
                      +.+.+|.++++|+.|.+..+...      ...+..|..++ +|+.|.+.++.+. ..|..| ...+|+.|++++|.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            34567899999999999765422      12344566664 6999999999886 445555 4689999999999988 6


Q ss_pred             CChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccC
Q 003931           93 IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ  172 (785)
Q Consensus        93 ~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~  172 (785)
                      ++..+ ..+++|++|+|+++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +
T Consensus       626 L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 LWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            77665 789999999999876544555 48889999999999988777889999999999999999987666777765 7


Q ss_pred             CCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc---c---ccCccccCCC
Q 003931          173 LKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS---G---EISANLIGNW  246 (785)
Q Consensus       173 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~---~---~~~~~~~~~l  246 (785)
                      +++|++|++++|.....+|..   .++|+.|++++|.+. .+|..+ .+++|+.|.+.++...   +   .++.......
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence            899999999999766566543   467899999999987 455544 5788888888875422   0   1111123345


Q ss_pred             CCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931          247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL  326 (785)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  326 (785)
                      ++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   .++|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            789999999998888899999999999999999986655777765 7899999999998765566643   368999999


Q ss_pred             ccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCcc
Q 003931          327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN  378 (785)
Q Consensus       327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~  378 (785)
                      ++|.++ .+|..+..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999998 678889999999999999865444577777777777777776663

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.3e-20  Score=206.99  Aligned_cols=262  Identities=25%  Similarity=0.275  Sum_probs=132.7

Q ss_pred             CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      -..|+++++.++. +|..+.  ++|+.|++++|+++.++.    ..++|++|++++|.++.+ |..   .++|+.|++++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence            4456777777663 343343  366777777777666542    245666666666666643 221   24566666666


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI  166 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  166 (785)
                      |.++ .+|..    ..+|+.|++++|+++.. |.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+++ +
T Consensus       272 N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        272 NPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             Cchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            6665 34431    24455666666666532 22   12456666666666553 2321   1234555555555543 2


Q ss_pred             CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC
Q 003931          167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW  246 (785)
Q Consensus       167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  246 (785)
                      |..   ..+|++|++++|+++. +|..   .++|+.|                        ++++|.+. .+|..    .
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L------------------------~Ls~N~L~-~LP~l----~  381 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKL------------------------WAYNNRLT-SLPAL----P  381 (788)
T ss_pred             ccc---ccccceEecCCCccCC-CCCC---Cccccee------------------------hhhccccc-cCccc----c
Confidence            321   1245555555555542 2221   1234444                        44444444 23321    1


Q ss_pred             CCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931          247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL  326 (785)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  326 (785)
                      .+|+.|++++|.+.+ +|..   .++|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            345555555555542 3321   2345556666665553 3432   234555666666665 45555666666666666


Q ss_pred             ccccccCCCCCC
Q 003931          327 FSNNLSGTIPPE  338 (785)
Q Consensus       327 ~~n~l~~~~p~~  338 (785)
                      ++|++++..+..
T Consensus       453 s~N~Ls~~~~~~  464 (788)
T PRK15387        453 EGNPLSERTLQA  464 (788)
T ss_pred             CCCCCCchHHHH
Confidence            666666554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=7.7e-20  Score=204.09  Aligned_cols=123  Identities=26%  Similarity=0.424  Sum_probs=55.5

Q ss_pred             CCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcc
Q 003931          248 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF  327 (785)
Q Consensus       248 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  327 (785)
                      +|++|++++|++.+ +|..   .++|+.|++++|.+++ +|..   ..+|+.|++++|++++ +|..   .++|+.|+++
T Consensus       343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS  410 (788)
T PRK15387        343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVS  410 (788)
T ss_pred             ccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEcc
Confidence            34455555554442 2221   1334444555555442 3321   1344555555555542 2321   1345555555


Q ss_pred             cccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCccc
Q 003931          328 SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDF  387 (785)
Q Consensus       328 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~  387 (785)
                      +|++++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++.++..+
T Consensus       411 ~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        411 GNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            555542 3322   223444555555554 345555555555555555555555444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.2e-18  Score=196.10  Aligned_cols=204  Identities=28%  Similarity=0.444  Sum_probs=89.9

Q ss_pred             CCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecc
Q 003931          127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA  206 (785)
Q Consensus       127 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  206 (785)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            4444444444444 2232221  23444444444444 2333332  24444444444444 2333222  244455555


Q ss_pred             ccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccccc
Q 003931          207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP  286 (785)
Q Consensus       207 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  286 (785)
                      +|++++ +|..+.  ++|+.|++++|.++ .+|...   .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .
T Consensus       292 ~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~  360 (754)
T PRK15370        292 DNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-V  360 (754)
T ss_pred             CCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-c
Confidence            544442 222221  23445555555554 233321   1345555555555543 333332  45555555555554 2


Q ss_pred             CChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC----CCCCCCCEEEccCCcCc
Q 003931          287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI----GSMASLVAFDVNTNQLH  356 (785)
Q Consensus       287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~l~~n~l~  356 (785)
                      +|..+.  ++|+.|++++|+++ .+|..+.  ..|+.|++++|+++ .+|..+    ..++.+..+++.+|.+.
T Consensus       361 LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        361 LPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            443332  45555555555555 2333332  24555555555555 333322    23355556666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.7e-18  Score=194.88  Aligned_cols=225  Identities=27%  Similarity=0.403  Sum_probs=119.2

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEc
Q 003931           54 SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL  133 (785)
Q Consensus        54 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  133 (785)
                      +|+.|++++|.++.. |..+.  .+|++|++++|.++ .+|..++   .+|+.|+|++|.+. .+|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            344444444444422 22111  24455555555544 3443321   24455555555544 2333322  24555555


Q ss_pred             CCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC
Q 003931          134 ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG  213 (785)
Q Consensus       134 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~  213 (785)
                      ++|+++ .+|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.+++ 
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-  339 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-  339 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-
Confidence            555555 2343332  355555555555553 333222  245666666666653 333222  456666666666653 


Q ss_pred             CchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChh---
Q 003931          214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE---  290 (785)
Q Consensus       214 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~---  290 (785)
                      +|..+.  ++|+.|++++|.++ .+|..+   .++|++|++++|.+. .+|..+.  ..|+.|++++|+++ .+|..   
T Consensus       340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~  409 (754)
T PRK15370        340 LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPH  409 (754)
T ss_pred             CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHH
Confidence            344332  56777777777776 455542   246777777777776 3454443  35777888888776 34443   


Q ss_pred             -ccCCCCCCEEECcCCccc
Q 003931          291 -IEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       291 -~~~l~~L~~L~Ls~n~l~  308 (785)
                       ++.++.+..|++.+|+++
T Consensus       410 ~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        410 FRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhhcCCCccEEEeeCCCcc
Confidence             344577888888888876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=4.7e-19  Score=186.42  Aligned_cols=104  Identities=29%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             EeCCCCCCCCCCc-cccCCCCCCcEEEccCCCCccc----CCccCCCCCCccEEECCCCCCcccCCh------hhhcCCC
Q 003931           34 LDLGGNFLETPDW-SKFSSMPSLTHLGLYLNELTLE----FPSFILTCRNLTYLDLSLNKLSGLIPE------RLFTNLG  102 (785)
Q Consensus        34 L~L~~n~i~~~~~-~~f~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~------~~f~~l~  102 (785)
                      |+|+.+.+..-.+ ..|..+.+|++|+++++.++..    ++..+...+++++++++++.+.+ .+.      ..|..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcC
Confidence            5555555543222 2344555666666666665322    23334445556666666555431 111      1234445


Q ss_pred             CCcEEECCCCCCcccCCccccCCCC---CcEEEcCCCcc
Q 003931          103 KLEYLNLTENQFQGKLSPNVSKLSN---LIDLRLATNKF  138 (785)
Q Consensus       103 ~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~L~~n~~  138 (785)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence            5555555555544333333322222   44444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=4.5e-19  Score=186.57  Aligned_cols=57  Identities=21%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             EEccCCCCc-ccCCccCCCCCCccEEECCCCCCccc----CChhhhcCCCCCcEEECCCCCCc
Q 003931           58 LGLYLNELT-LEFPSFILTCRNLTYLDLSLNKLSGL----IPERLFTNLGKLEYLNLTENQFQ  115 (785)
Q Consensus        58 L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~f~~l~~L~~L~Ls~n~i~  115 (785)
                      |+|..+.++ ......+..+.+|+.++++++.++..    ++.. +...+.+++++++++.+.
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETG   64 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccC
Confidence            445555544 22233444455566666666655321    2222 234455566666555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.7e-17  Score=173.28  Aligned_cols=98  Identities=34%  Similarity=0.465  Sum_probs=82.4

Q ss_pred             hhhhhhhcccccccceeeeehhhhhhhhCCCCCc---------hhhhccC---cccccccccCCCCCCCchhHHHHHHHH
Q 003931          669 LTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---------LITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTI  736 (785)
Q Consensus       669 l~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---------~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~  736 (785)
                      -+||..++++|+|+||||||||+||++|||+|.|         ++.|++.   .....+++||++........+++.+++
T Consensus       246 ~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~  325 (361)
T KOG1187|consen  246 APEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLA  325 (361)
T ss_pred             ChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHH
Confidence            3699999999999999999999999999999876         6778754   457899999999732112226788899


Q ss_pred             HHHhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          737 NVALACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       737 ~ial~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++|+.|++.+|++||+|.|||++|+.+...
T Consensus       326 ~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  326 ELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            999999999999999999999999776543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.6e-18  Score=149.92  Aligned_cols=165  Identities=36%  Similarity=0.620  Sum_probs=94.7

Q ss_pred             CCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCee
Q 003931          124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYL  203 (785)
Q Consensus       124 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  203 (785)
                      ++.++..|.|++|+++ .+|..++.+.+|++|++++|++. ..|..++.+++|++|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3445555666666666 34445666666666666666665 45555666666666666666554 455555555555555


Q ss_pred             eccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccc
Q 003931          204 ALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNF  283 (785)
Q Consensus       204 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  283 (785)
                      ++.+|++...                       .+|.+ |..++.|+.|.+++|.+. .+|.+++++++|+.|.+..|.+
T Consensus       108 dltynnl~e~-----------------------~lpgn-ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  108 DLTYNNLNEN-----------------------SLPGN-FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hccccccccc-----------------------cCCcc-hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            5555544321                       23333 333455555555666555 4555666666666666666665


Q ss_pred             cccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931          284 SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL  318 (785)
Q Consensus       284 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  318 (785)
                      - .+|..++.++.|++|.+.+|+++ .+|+.++++
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            5 45666666666666666666666 444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3.9e-18  Score=147.63  Aligned_cols=165  Identities=33%  Similarity=0.544  Sum_probs=124.4

Q ss_pred             cCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCC
Q 003931          171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELE  250 (785)
Q Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  250 (785)
                      ..+.+.+.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ ..|..++++++|+.|+++-|++. ..|.. |+.++.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchhh
Confidence            34556666777777776 55666777777777777777776 56677777888888888888776 66666 78888888


Q ss_pred             EEEeecCcCcc-cCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccc
Q 003931          251 SLQIQNNSFMG-NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN  329 (785)
Q Consensus       251 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (785)
                      .||+.+|.+.. ..|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            88888877754 46777777888888888888886 67777888888888888888877 67778888888888888888


Q ss_pred             cccCCCCCCCCCC
Q 003931          330 NLSGTIPPEIGSM  342 (785)
Q Consensus       330 ~l~~~~p~~~~~l  342 (785)
                      +++ .+|++++++
T Consensus       184 rl~-vlppel~~l  195 (264)
T KOG0617|consen  184 RLT-VLPPELANL  195 (264)
T ss_pred             eee-ecChhhhhh
Confidence            887 566655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=8.7e-13  Score=135.90  Aligned_cols=172  Identities=28%  Similarity=0.449  Sum_probs=84.9

Q ss_pred             CCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecc
Q 003931          127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA  206 (785)
Q Consensus       127 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  206 (785)
                      --...|++.|++. .+|..+..+..|+.+.|++|.+. .+|..++++..|+.+|++.|+++ ..|..+..|+ |+.|-++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3344566666665 45555555566666666666655 45555666666666666666655 4444444443 5555555


Q ss_pred             ccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccccc
Q 003931          207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP  286 (785)
Q Consensus       207 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  286 (785)
                      +|+++ .+|..++....|..|+.+.|.+. .+|.. ++.+.+|+.|.+..|++. .+|..+.. -.|..||++.|+++ .
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsq-l~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQ-LGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHH-hhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-e
Confidence            55554 34444444455555555555544 33333 444444444444444444 23333332 22444444444443 3


Q ss_pred             CChhccCCCCCCEEECcCCccc
Q 003931          287 IPSEIEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       287 ~p~~~~~l~~L~~L~Ls~n~l~  308 (785)
                      +|..|.++..|++|-|.+|.+.
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC
Confidence            4444444444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=5.2e-12  Score=130.27  Aligned_cols=194  Identities=34%  Similarity=0.506  Sum_probs=154.0

Q ss_pred             CCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeec
Q 003931          463 HPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLN  542 (785)
Q Consensus       463 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  542 (785)
                      +.--...|++.|++. .+|..+..+..|+.+.|.+|.+. .+|..+.++..|..+||+.|++. ..|..+..+ -|+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence            344567889999987 67788888899999999999987 67888999999999999999998 566666665 489999


Q ss_pred             ccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCC
Q 003931          543 LSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS  622 (785)
Q Consensus       543 ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~  622 (785)
                      +++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|+++.|++. .+|+.+..|+-..  +|+|+|+++
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~--lDfScNkis  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIR--LDFSCNKIS  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceee--eecccCcee
Confidence            9999998 78888888899999999999988 57778899999999999999987 5677766655443  899999988


Q ss_pred             CCCCcccccCCCCceEeccCCceeeecCCccc---ccccceeeecCCC
Q 003931          623 GTIPQELGKLTSLEILNLSRNQLSGRIPASLS---SMISLRSVDFSDN  667 (785)
Q Consensus       623 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~l~~l~l~~n  667 (785)
                       .+|..|..++.|++|-|.+|.++. .|..+.   ...-.++|+....
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence             778889999999999999998873 333332   2223455555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=9.4e-11  Score=126.86  Aligned_cols=199  Identities=36%  Similarity=0.500  Sum_probs=132.8

Q ss_pred             EEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCC-CCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931           57 HLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG-KLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT  135 (785)
Q Consensus        57 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  135 (785)
                      .+++..+.+... ...+..++.++.|++.+|.++ .++... .... +|++|++++|.+. ..+..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            466666655322 223344467777777777777 556544 4443 7777788777777 3445677777788888888


Q ss_pred             CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCc
Q 003931          136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLP  215 (785)
Q Consensus       136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  215 (785)
                      |++. .+|...+..++|+.|++++|.+. .+|........|+++.+++|.+. ..+..+..++++..+.+.+|++.. .+
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~  248 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP  248 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence            8777 34444446777788888888777 44554455556778888877533 445566777777777777777663 25


Q ss_pred             hhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931          216 LSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE  266 (785)
Q Consensus       216 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  266 (785)
                      ..++.++.++.|++++|.++ .++.  ++.+.+++.|++++|.+....|..
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             chhccccccceecccccccc-cccc--ccccCccCEEeccCccccccchhh
Confidence            66677777888888888877 5554  677788888888888777655543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=1.2e-10  Score=126.11  Aligned_cols=198  Identities=37%  Similarity=0.547  Sum_probs=111.2

Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCC-CCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMS-NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      .++++.+.+. .....+..++.+..|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3445444442 12223333455555666665555 3333444442 5666666666655 33344556666666666666


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCC
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP  264 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  264 (785)
                      .+. .++...+..+.|+.|++++|++. .+|........|+++.+++|.+. ..+.. +.++.++..+.+.+|++.. .+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~-~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLED-LP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeee-cc
Confidence            665 33433335566666666666665 33444344455666666666433 22222 5666666666666666553 24


Q ss_pred             ccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCc
Q 003931          265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP  313 (785)
Q Consensus       265 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  313 (785)
                      ..++.++.+++|++++|.++... . ++.+.+++.|++++|.+....|.
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             chhccccccceeccccccccccc-c-ccccCccCEEeccCccccccchh
Confidence            55666777777777777776432 2 66777777777777777655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=4.8e-11  Score=109.60  Aligned_cols=130  Identities=28%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccC-CCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFS-SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK  103 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~  103 (785)
                      +.+..+++.|+|++|.|+.++.  +. .+.+|++|++++|.|+.+  +.+..+++|+.|++++|.|+ .+...+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             ---------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            4566678899999999888763  44 578899999999998865  35777889999999999998 566554456889


Q ss_pred             CcEEECCCCCCcccC-CccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEccc
Q 003931          104 LEYLNLTENQFQGKL-SPNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELFN  159 (785)
Q Consensus       104 L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~  159 (785)
                      |++|++++|+|.... -..+..+++|+.|++.+|.++...-   ..+..+++|+.||-..
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999999987532 2456788999999999998874321   1246788999988653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=8.5e-11  Score=107.99  Aligned_cols=130  Identities=25%  Similarity=0.288  Sum_probs=50.0

Q ss_pred             ccCCCCCCcEEEccCCCCcccCCccCC-CCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCC
Q 003931           48 KFSSMPSLTHLGLYLNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS  126 (785)
Q Consensus        48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  126 (785)
                      .+.+...++.|+|.+|.|+.+  +.++ .+.+|+.|++++|.|+ .++.  +..++.|++|++++|.|+.........++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-T
T ss_pred             ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCC
Confidence            355666789999999998865  2344 5788999999999988 4553  47889999999999999854332224688


Q ss_pred             CCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccCC---ccccCCCCCCEEEcc
Q 003931          127 NLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIP---SSLGQLKNLQHLDLR  182 (785)
Q Consensus       127 ~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~  182 (785)
                      +|+.|++++|++..... ..++.+++|++|++.+|.+....-   ..+..+|+|+.||-.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99999999998875321 346678899999999998874311   236678899988754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.08  E-value=8.6e-11  Score=135.26  Aligned_cols=129  Identities=29%  Similarity=0.325  Sum_probs=70.0

Q ss_pred             CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC--CcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931           29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE--LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~  106 (785)
                      ...|...+.+|.+..+...  ..++.|++|-+..|.  +..+....|..++.|++|||++|.--+.+|..+ +.+-+||+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhc
Confidence            4455555555555443311  223355565555554  444444455556666666666554333556555 55666666


Q ss_pred             EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCc
Q 003931          107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS  161 (785)
Q Consensus       107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  161 (785)
                      |+++++.+. ..|..+.+++.|.+|++..+.....+|.....+++|++|.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            666666655 555566666666666666555444444444556666666665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.5e-11  Score=121.62  Aligned_cols=211  Identities=23%  Similarity=0.225  Sum_probs=110.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCc-cccCCCCCCcEEEccCCCCccc--CCccCCCCCCccEEECCCCCCcccCChhhhcCCC
Q 003931           26 SSLRKVRYLDLGGNFLETPDW-SKFSSMPSLTHLGLYLNELTLE--FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG  102 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~-~~f~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~  102 (785)
                      +++.+|+.+.|.++.+..... .....|++++.|||++|-+..-  .-.....+++|+.|+++.|++........-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            455556666666555443321 2334566666666666654422  1223345566666666666554222222223455


Q ss_pred             CCcEEECCCCCCccc-CCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC-CccccCCCCCCEEE
Q 003931          103 KLEYLNLTENQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI-PSSLGQLKNLQHLD  180 (785)
Q Consensus       103 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~  180 (785)
                      +|+.|.|+.|.++.. +......+++|+.|+|..|............++.|++|+|++|.+.... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            666666666666522 1122345566666666666422222223344566666666666655321 12355666666666


Q ss_pred             cccCcCcccC-Ccc-----ccCCcccCeeeccccccccCC-chhccCCCCCCEEEccCCCCcc
Q 003931          181 LRMNALNYTI-PPE-----LGLCTNLSYLALAVNQLSGGL-PLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       181 l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      ++.+.+...- |+.     ...+++|++|++..|+|...- -..+..+++|+.|.+..|.+..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            6666665322 111     245567777777777774321 2334455667777777776653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.7e-11  Score=122.76  Aligned_cols=229  Identities=24%  Similarity=0.210  Sum_probs=156.2

Q ss_pred             EeCCCCCCCCCCcccc----CCCCCCcEEEccCCCCcccCC-ccCCCCCCccEEECCCCCCcccCC-hhhhcCCCCCcEE
Q 003931           34 LDLGGNFLETPDWSKF----SSMPSLTHLGLYLNELTLEFP-SFILTCRNLTYLDLSLNKLSGLIP-ERLFTNLGKLEYL  107 (785)
Q Consensus        34 L~L~~n~i~~~~~~~f----~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~-~~~f~~l~~L~~L  107 (785)
                      +.+++-.+..+..+.+    +++..|+.+.|.++.+..... .....|++++.||||+|-+....+ ..+...+++|+.|
T Consensus        98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L  177 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL  177 (505)
T ss_pred             hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence            3444444444443332    467889999998888763332 366778999999999997663222 2344679999999


Q ss_pred             ECCCCCCcccCCc-cccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931          108 NLTENQFQGKLSP-NVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA  185 (785)
Q Consensus       108 ~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  185 (785)
                      +|+.|.+...... .-..+++|+.|.++.|.++...- .....+++|+.|+|..|...........-+..|+.|||++|.
T Consensus       178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            9999987733222 22357889999999998874211 223578999999999996443333344557789999999998


Q ss_pred             CcccC-CccccCCcccCeeeccccccccCC-chh-----ccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCc
Q 003931          186 LNYTI-PPELGLCTNLSYLALAVNQLSGGL-PLS-----LSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS  258 (785)
Q Consensus       186 l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  258 (785)
                      +-... -...+.++.|+.|+++.+.+...- |+.     ...+++|++|++..|++...-..+-+..+++|+.|.+..|.
T Consensus       258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            75321 245678889999999999887642 322     35678999999999998633222235556778888888887


Q ss_pred             Cccc
Q 003931          259 FMGN  262 (785)
Q Consensus       259 l~~~  262 (785)
                      +...
T Consensus       338 ln~e  341 (505)
T KOG3207|consen  338 LNKE  341 (505)
T ss_pred             cccc
Confidence            7643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=4.7e-11  Score=113.45  Aligned_cols=133  Identities=25%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             CCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCC
Q 003931          146 IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLN  225 (785)
Q Consensus       146 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~  225 (785)
                      +...+.|+++||++|.++ .+.+++.-.|.++.|++|+|.+...  ..++.+++|+.|++++|.++ .+..+-.++-+++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            334456666677776666 3445555666677777777766533  23566667777777777665 2333444566667


Q ss_pred             EEEccCCCCccccCccccCCCCCCCEEEeecCcCcccC-CccCcCCCCCcEEECcCccccc
Q 003931          226 DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI-PPEIGLLTKLQYLFLYRNNFSG  285 (785)
Q Consensus       226 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~  285 (785)
                      .|.|+.|.+. .+..  ++.+-+|..||+++|++.... -..++++|-|+.+.|.+|.+.+
T Consensus       356 tL~La~N~iE-~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIE-TLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHh-hhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7777777665 3332  566667777777777765321 2357788888888888888764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=2.5e-11  Score=118.30  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=89.2

Q ss_pred             CCCCCcEEEcCCCcccccC----CcCCCCCCCCCEEEcccCcccc----cCCccccCCCCCCEEEcccCcCcc----cCC
Q 003931          124 KLSNLIDLRLATNKFSGPI----PGDIGSMSNLQLVELFNNSFTG----QIPSSLGQLKNLQHLDLRMNALNY----TIP  191 (785)
Q Consensus       124 ~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~----~~~  191 (785)
                      .-+.|+++..++|++....    ...|...+.|+.+.++.|.+..    ....++..+++|++||+..|.++.    .+.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            3467777777777765321    2234556778888888776652    223456778888888888887753    233


Q ss_pred             ccccCCcccCeeeccccccccCCchhc-----cCCCCCCEEEccCCCCccc---cCccccCCCCCCCEEEeecCcC
Q 003931          192 PELGLCTNLSYLALAVNQLSGGLPLSL-----SNLSKLNDLGLSDNFLSGE---ISANLIGNWTELESLQIQNNSF  259 (785)
Q Consensus       192 ~~~~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l  259 (785)
                      ..+...++|+.+++++|.+......++     ...++|++|.+.+|.++..   .-.......+.|+.|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            445566778888888887765433333     2467888888888887632   1122245578888999999888

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=6.1e-11  Score=112.70  Aligned_cols=223  Identities=21%  Similarity=0.179  Sum_probs=117.8

Q ss_pred             CCCCcEEEccCCC--------CCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCC
Q 003931            4 LSELQYLSVYDNN--------LNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILT   75 (785)
Q Consensus         4 l~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~   75 (785)
                      +..|..|.+++-.        +...+|..+..+++|+.+.+|.+.-..|.. .-..-|.|+++...+..++...  .+-.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~--~l~p  257 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVP--SLLP  257 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccc--cccc
Confidence            3455566655432        223345556677777777777775433321 1122356777766655443211  1111


Q ss_pred             CCCccEEECCCCC-CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCE
Q 003931           76 CRNLTYLDLSLNK-LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQL  154 (785)
Q Consensus        76 l~~L~~L~Ls~n~-i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  154 (785)
                      ...+.-..-+.-. .+|..-..+ .....|+++|||+|.|+ .+.....-.+.++.|++|+|.+...  +.+..+++|+.
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~-dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~  333 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSA-DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL  333 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEec-chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence            1111111111000 001111111 22345666777777666 3344555566677777777776632  23666677777


Q ss_pred             EEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCC-chhccCCCCCCEEEccCCC
Q 003931          155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL-PLSLSNLSKLNDLGLSDNF  233 (785)
Q Consensus       155 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~  233 (785)
                      |||++|.++. +..+=.++.++++|.++.|.+...  ..++.+-+|..|++.+|+|.... ...+++++.|+.+.|.+|.
T Consensus       334 LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  334 LDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            7777776653 223334556677777777766422  34556666777777777776432 3456777777778887777


Q ss_pred             Ccc
Q 003931          234 LSG  236 (785)
Q Consensus       234 l~~  236 (785)
                      +.+
T Consensus       411 l~~  413 (490)
T KOG1259|consen  411 LAG  413 (490)
T ss_pred             ccc
Confidence            763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=2.7e-10  Score=131.17  Aligned_cols=287  Identities=23%  Similarity=0.245  Sum_probs=150.5

Q ss_pred             CCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC--CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcE
Q 003931           53 PSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK--LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLID  130 (785)
Q Consensus        53 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  130 (785)
                      ...+...+-+|.+..+. .. ..++.|++|-+.+|.  +. .++..+|..++.|++|||++|.--+..|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~-~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA-GS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhcc-CC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            45566666666554222 11 123467777777664  33 566666677777777777776655667777777777777


Q ss_pred             EEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC--cccCCccccCCcccCeeecccc
Q 003931          131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL--NYTIPPELGLCTNLSYLALAVN  208 (785)
Q Consensus       131 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n  208 (785)
                      |+++++.+. .+|..+++++.|.+|++..+.-...+|.....+++|++|.+..-..  +...-..+..+.+|+.+.....
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            777777776 5666777777777777777655444555566677777777655431  1112222334444444444322


Q ss_pred             ccccCCchhccCCCCCC----EEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcC------CCCCcEEEC
Q 003931          209 QLSGGLPLSLSNLSKLN----DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL------LTKLQYLFL  278 (785)
Q Consensus       209 ~i~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L  278 (785)
                      ..  .+-..+..+.+|.    .+.+.++... ..+.. ++.+.+|+.|.+.++.+..........      ++.+..+..
T Consensus       679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~-~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISS-LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             hh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecc-cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            22  1111122222222    2222222222 11222 566777777777777765332222111      222333333


Q ss_pred             cCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCC-CCCCCCCCCCCCEE
Q 003931          279 YRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT-IPPEIGSMASLVAF  348 (785)
Q Consensus       279 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L  348 (785)
                      .++..- ..+.+....++|+.|.+..+.....+.+....+..+..+.+..+.+.+. .-...+.++++..+
T Consensus       755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~  824 (889)
T KOG4658|consen  755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL  824 (889)
T ss_pred             hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec
Confidence            333221 2233334457788888877766655555555555666555555555544 23333444444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=3.8e-11  Score=117.10  Aligned_cols=247  Identities=23%  Similarity=0.290  Sum_probs=110.2

Q ss_pred             CCCCCCccEEECCCCCCcccCCh---hhhcCCCCCcEEECCCCCCcc----cCC-------ccccCCCCCcEEEcCCCcc
Q 003931           73 ILTCRNLTYLDLSLNKLSGLIPE---RLFTNLGKLEYLNLTENQFQG----KLS-------PNVSKLSNLIDLRLATNKF  138 (785)
Q Consensus        73 ~~~l~~L~~L~Ls~n~i~~~~~~---~~f~~l~~L~~L~Ls~n~i~~----~~~-------~~~~~l~~L~~L~L~~n~~  138 (785)
                      ......++.++||+|.+...-..   ....+.+.|+..+++.- ++|    .+|       .++..+++|++|+||.|.+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            34456777778887766422111   12345566666666542 222    122       1233445555555555554


Q ss_pred             cccCCcC----CCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC-
Q 003931          139 SGPIPGD----IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG-  213 (785)
Q Consensus       139 ~~~~~~~----l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-  213 (785)
                      .-..+..    +.++..|++|.|.+|.+...-...++.  .|.+|.  .       ....+.-+.|+++....|++... 
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeecccccccc
Confidence            4222211    234445555555555443111111110  011111  0       01122334555665555555432 


Q ss_pred             ---CchhccCCCCCCEEEccCCCCccc---cCccccCCCCCCCEEEeecCcCccc----CCccCcCCCCCcEEECcCccc
Q 003931          214 ---LPLSLSNLSKLNDLGLSDNFLSGE---ISANLIGNWTELESLQIQNNSFMGN----IPPEIGLLTKLQYLFLYRNNF  283 (785)
Q Consensus       214 ---~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  283 (785)
                         +...|...+.|+.+.++.|.|...   +-...+..+++|++|+|.+|.++..    +...+..++.|+++++++|.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence               122344445566666666655321   1111245556666666666655432    122344455666666666655


Q ss_pred             cccCChhc-----cCCCCCCEEECcCCccccc----CCccCcCCCCCCEEEcccccc
Q 003931          284 SGPIPSEI-----EKLTSLENLDLSGNQLSGT----IPPTLWNLTNLLSLQLFSNNL  331 (785)
Q Consensus       284 ~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  331 (785)
                      ......+|     ...++|+.|.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            43322222     1245666666666655421    111233345555555555554

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=8.4e-10  Score=124.80  Aligned_cols=110  Identities=33%  Similarity=0.531  Sum_probs=80.8

Q ss_pred             CCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEcc
Q 003931          272 KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVN  351 (785)
Q Consensus       272 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~  351 (785)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|++++|++++.+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcCccccCcccccc-CCCcEEEecCccccc
Q 003931          352 TNQLHGELPENISRL-VKLNKFSVFTNNFSG  381 (785)
Q Consensus       352 ~n~l~~~~~~~~~~l-~~L~~l~l~~n~l~~  381 (785)
                      +|.+.|.+|..+... .++..+++.+|....
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            777777777766543 355667777775443

>PLN03150 hypothetical protein; Provisional

Probab=98.96  E-value=8e-10  Score=124.94  Aligned_cols=107  Identities=39%  Similarity=0.652  Sum_probs=67.6

Q ss_pred             CCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCC
Q 003931          514 LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH  593 (785)
Q Consensus       514 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  593 (785)
                      ++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.|.+|..+..+++|+.|++++|++++.+|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcCcccCCcccchhh-hhhheeecccccC
Q 003931          594 NDLSGEIPSNLGNLF-VLQYMLDLSSNSL  621 (785)
Q Consensus       594 N~l~~~~p~~~~~l~-~l~~~l~ls~n~l  621 (785)
                      |+++|.+|..++.+. .+. .+++++|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~-~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRA-SFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCc-eEEecCCcc
Confidence            666666666655432 122 255666653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.91  E-value=1.4e-10  Score=125.39  Aligned_cols=247  Identities=26%  Similarity=0.262  Sum_probs=162.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931           26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  105 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~  105 (785)
                      ..+..++.+++..|.|..+. ..+..+.+|..|++.+|.|..+.. .+..+++|++|++++|.|+. +..  +..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~-i~~--l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK-LEG--LSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhhhhh-cccccccceeeeeccccchhhccc-chhhhhcchheecccccccc-ccc--hhhccchh
Confidence            34566666667777776632 345667778888888887775532 25667788888888888873 332  25667788


Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      .|++++|.|...  ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence            888888887733  345557788888888888875443 2 46778888888888877633  33455556666677888


Q ss_pred             cCcccCCccccCCcc--cCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCccc
Q 003931          185 ALNYTIPPELGLCTN--LSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN  262 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  262 (785)
                      .++..-+  +..+..  |+.+++++|.+.. .+..+..+..+..+++.+|++... ..  +...+.+..+....+.+...
T Consensus       219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~-~~--~~~~~~~~~~~~~~~~~~~~  292 (414)
T KOG0531|consen  219 KISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL-EG--LERLPKLSELWLNDNKLALS  292 (414)
T ss_pred             cceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc-cc--ccccchHHHhccCcchhcch
Confidence            7764322  222333  7888888888873 234566778888888888887632 21  44556666777777765522


Q ss_pred             ---CCcc-CcCCCCCcEEECcCccccccCC
Q 003931          263 ---IPPE-IGLLTKLQYLFLYRNNFSGPIP  288 (785)
Q Consensus       263 ---~~~~-~~~l~~L~~L~L~~n~l~~~~p  288 (785)
                         .... .+..+.++.+.+..|......+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  293 EAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhhhccccccccccccccccccCccccccc
Confidence               1121 4567788888998888765444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.90  E-value=1.7e-10  Score=124.76  Aligned_cols=242  Identities=29%  Similarity=0.325  Sum_probs=114.0

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          101 LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       101 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      +..++.+++..|.+.. ....+..+++|..|++.+|++... ...+..+++|++|++++|.|+..  ..+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            3344444444444442 222344445555555555555422 11144455555555555555533  2244444555555


Q ss_pred             cccCcCcccCCccccCCcccCeeeccccccccCCc-hhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931          181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLP-LSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF  259 (785)
Q Consensus       181 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  259 (785)
                      +++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+. .+..  +..+..+..+++..|.+
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccc--hHHHHHHHHhhcccccc
Confidence            555555422  233335555555555555553322 1 345555566666666554 2111  22333344445555555


Q ss_pred             cccCCccCcCCC--CCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCC---
Q 003931          260 MGNIPPEIGLLT--KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT---  334 (785)
Q Consensus       260 ~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---  334 (785)
                      +..-+  +..+.  .|+.+++++|.+.. .+..+..+..+..+++++|++...  ..+...+.+..+....|.+...   
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence            53322  11222  26666677766652 224455566666677776666533  1234444555555555554421   


Q ss_pred             CCCC-CCCCCCCCEEEccCCcCcc
Q 003931          335 IPPE-IGSMASLVAFDVNTNQLHG  357 (785)
Q Consensus       335 ~p~~-~~~l~~L~~L~l~~n~l~~  357 (785)
                      .... ....+.+....+..|.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hccccccccccccccccccCcccc
Confidence            1111 3344455555555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=2.1e-09  Score=81.03  Aligned_cols=59  Identities=39%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK   88 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~   88 (785)
                      +|++|++++|+++.+++++|.++++|++|++++|.++.+.+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555555555555555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=3e-09  Score=80.16  Aligned_cols=60  Identities=32%  Similarity=0.398  Sum_probs=35.9

Q ss_pred             CCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC
Q 003931            5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE   64 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~   64 (785)
                      ++|++|++++|+++.+.+..|.++++|++|++++|.++.+++++|.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            345566666666665555556666666666666666666655566666666666666554

...

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=98.77  E-value=4.5e-09  Score=109.16  Aligned_cols=86  Identities=26%  Similarity=0.396  Sum_probs=63.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|....++.|.|+|||||||+|.|++| ||-|..      .++.+.+..        +|..+    ..|-..+.+|...|
T Consensus       373 PEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~Gy--------Rlp~P----~~CP~~vY~lM~~C  440 (468)
T KOG0197|consen  373 PEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGY--------RLPRP----EGCPDEVYELMKSC  440 (468)
T ss_pred             HHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccC--------cCCCC----CCCCHHHHHHHHHH
Confidence            377778899999999999999999999 787732      233322221        22222    23445677889999


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      +..+|++|||.......++++....
T Consensus       441 W~~~P~~RPtF~~L~~~l~~~~~~~  465 (468)
T KOG0197|consen  441 WHEDPEDRPTFETLREVLEDFFTST  465 (468)
T ss_pred             hhCCcccCCCHHHHHHHHHHhhhcc
Confidence            9999999999998888888876543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=98.72  E-value=7.9e-09  Score=107.50  Aligned_cols=89  Identities=26%  Similarity=0.350  Sum_probs=56.4

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+++|+||||||||+.|++||+.|..-...+.-   ...++..........  .+--.+..+.-.|++.+|++||++.
T Consensus       220 ~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~---~~~v~~~~~Rp~~p~--~~~~~l~~l~~~CW~~dp~~RP~f~  294 (362)
T KOG0192|consen  220 KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQV---ASAVVVGGLRPPIPK--ECPPHLSSLMERCWLVDPSRRPSFL  294 (362)
T ss_pred             CCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHH---HHHHHhcCCCCCCCc--cCCHHHHHHHHHhCCCCCCcCCCHH
Confidence            56789999999999999999999999641111100   001111111100000  0222233444559999999999999


Q ss_pred             HHHHHHHhcccccC
Q 003931          755 FVAQELSAKTQAYL  768 (785)
Q Consensus       755 ~vv~~l~~~~~~~~  768 (785)
                      +++.+|+.+...+.
T Consensus       295 ei~~~l~~~~~~~~  308 (362)
T KOG0192|consen  295 EIVSRLESIMSHIS  308 (362)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998766544

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=2.8e-08  Score=108.84  Aligned_cols=87  Identities=29%  Similarity=0.410  Sum_probs=64.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCccccccccc----CCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLD----QRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d----~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      |--.-++.|+++|||||||||-|++| ||.|..       +..-.||++    .++..   ..+.|-.+|..+.+.|+++
T Consensus       675 EsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~-------glSn~EVIe~i~~g~lL~---~Pe~CP~~vY~LM~~CW~~  744 (774)
T KOG1026|consen  675 ESILYGKFTTESDVWSFGVVLWEIFSYGKQPYY-------GLSNQEVIECIRAGQLLS---CPENCPTEVYSLMLECWNE  744 (774)
T ss_pred             HHhhcCcccchhhhhhhhhhhhhhhccccCccc-------ccchHHHHHHHHcCCccc---CCCCCCHHHHHHHHHHhhc
Confidence            55667899999999999999999999 899942       111122222    12211   2345667788999999999


Q ss_pred             CCCCCCChHHHHHHHHhccccc
Q 003931          746 TPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      .|++||+..|+-..|+...+..
T Consensus       745 ~P~~RPsF~eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  745 NPKRRPSFKEIHSRLQAWAQAS  766 (774)
T ss_pred             CcccCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.54  E-value=3.4e-08  Score=93.67  Aligned_cols=94  Identities=21%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC--ccccccc--ccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG--ELFLKDV--LDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~--~~~~~~~--~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+-.....+.|+|||||||++.|++||+.|..-......  .......  .++.-. ...........+.++...|.+.
T Consensus        73 PE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~cl~~  151 (176)
T smart00750       73 PEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDR-SNLESVSAARSFADFMRVCASR  151 (176)
T ss_pred             hHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCcccc-ccHHHHHhhhhHHHHHHHHHhc
Confidence            3555556678899999999999999999999531111000  0000000  011100 0001111112467788899999


Q ss_pred             CCCCCCChHHHHHHHHhcc
Q 003931          746 TPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~  764 (785)
                      +|++||++.|+++.+..+.
T Consensus       152 ~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      152 LPQRREAANHYLAHCRALF  170 (176)
T ss_pred             ccccccCHHHHHHHHHHHH
Confidence            9999999999999876553

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=98.53  E-value=1.3e-08  Score=103.32  Aligned_cols=85  Identities=26%  Similarity=0.392  Sum_probs=51.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+||||||++++|++| |+.|..-.   ........+.+.........   +-..+.++...|++.+|+
T Consensus       174 PE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~C~~~~p~  247 (259)
T PF07714_consen  174 PEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY---DNEEIIEKLKQGQRLPIPDN---CPKDIYSLIQQCWSHDPE  247 (259)
T ss_dssp             HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS---CHHHHHHHHHTTEETTSBTT---SBHHHHHHHHHHT-SSGG
T ss_pred             cccccccccccccccccccccccccccccccccccc---ccccccccccccccceeccc---hhHHHHHHHHHHcCCChh
Confidence            466666778999999999999999999 67774200   00000111111111100001   112345778899999999


Q ss_pred             CCCChHHHHHHH
Q 003931          749 TRPSMRFVAQEL  760 (785)
Q Consensus       749 ~Rp~m~~vv~~l  760 (785)
                      +||+|.+++++|
T Consensus       248 ~RPs~~~i~~~L  259 (259)
T PF07714_consen  248 KRPSFQEILQEL  259 (259)
T ss_dssp             GS--HHHHHHHH
T ss_pred             hCcCHHHHHhcC
Confidence            999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.52  E-value=8e-08  Score=99.02  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchh--------hhccCc---ccccccccCCCCCCCchhHHHHHHHHHHH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI--------TSLSGE---LFLKDVLDQRLPPPTGQLAEAVVLTINVA  739 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~--------~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~ia  739 (785)
                      |+......+.|+|||||||++.|++||+.|....        .+....   ....+.++.....+.  .......+.++.
T Consensus       180 E~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li  257 (283)
T cd05080         180 ECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPC--PKNCPQEVYILM  257 (283)
T ss_pred             hHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCC--CCCCCHHHHHHH
Confidence            4444456788999999999999999999985311        110000   011112222111110  011224567789


Q ss_pred             hhcCCCCCCCCCChHHHHHHHHhcc
Q 003931          740 LACTSTTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       740 l~C~~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      ..|.+.+|++||+|.+|+++|+++.
T Consensus       258 ~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         258 KNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             HHHhccChhhCCCHHHHHHHHHHhh
Confidence            9999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PHA02988 hypothetical protein; Provisional

Probab=98.47  E-value=5.2e-08  Score=100.21  Aligned_cols=78  Identities=27%  Similarity=0.325  Sum_probs=53.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      ...+.|+|||||||++.|++||+.|.+-      ...+....     ..+.+..   .   +-..+-++.-.|++.+|++
T Consensus       197 ~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~---~---~~~~l~~li~~cl~~dp~~  265 (283)
T PHA02988        197 SEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKN-----NSLKLPL---D---CPLEIKCIVEACTSHDSIK  265 (283)
T ss_pred             ccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcC-----CCCCCCC---c---CcHHHHHHHHHHhcCCccc
Confidence            4678999999999999999999999541      11110000     0111110   0   1112446677899999999


Q ss_pred             CCChHHHHHHHHhcc
Q 003931          750 RPSMRFVAQELSAKT  764 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~  764 (785)
                      ||+|.||++.|+..+
T Consensus       266 Rps~~ell~~l~~~~  280 (283)
T PHA02988        266 RPNIKEILYNLSLYK  280 (283)
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=2.4e-09  Score=113.89  Aligned_cols=180  Identities=31%  Similarity=0.329  Sum_probs=111.1

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCccccCCC-CCCcEEEccCCCCc---ccCCcc---CCC---CCCccEEECCCCCCcc
Q 003931           22 PFQLSSLRKVRYLDLGGNFLETPDWSKFSSM-PSLTHLGLYLNELT---LEFPSF---ILT---CRNLTYLDLSLNKLSG   91 (785)
Q Consensus        22 ~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l-~~L~~L~L~~n~i~---~~~~~~---~~~---l~~L~~L~Ls~n~i~~   91 (785)
                      |-++-.++.||+|.+.++.+....  .+..+ ..|+.|.-.+ .++   .++...   |.+   --.|.+.+.++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            445667788888888888765421  22221 2344443221 111   111111   111   125777778888776 


Q ss_pred             cCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCcccc
Q 003931           92 LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLG  171 (785)
Q Consensus        92 ~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~  171 (785)
                      .+...+ .-++.|+.|||++|+++...  .+..|++|+.|||+.|.+.....-...+|+ |+.|.+.+|.++..  ..+.
T Consensus       178 ~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie  251 (1096)
T KOG1859|consen  178 LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE  251 (1096)
T ss_pred             hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence            344333 66788888888888887433  677888888888888888743322334454 88888888887743  3567


Q ss_pred             CCCCCCEEEcccCcCcccCC-ccccCCcccCeeeccccccc
Q 003931          172 QLKNLQHLDLRMNALNYTIP-PELGLCTNLSYLALAVNQLS  211 (785)
Q Consensus       172 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~  211 (785)
                      ++.+|+.||+++|-+.+... ..++.+..|+.|+|.+|.+-
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88888888888887764321 22455667788888888764

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=98.45  E-value=5.2e-08  Score=99.54  Aligned_cols=87  Identities=24%  Similarity=0.329  Sum_probs=56.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++|||||||+++|++| |+.|......   +.....+... ...+  ...+.-..+.+++..|.+.+|++
T Consensus       180 E~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~---~~~~~~i~~~-~~~~--~~~~~~~~~~~li~~c~~~~p~~  253 (268)
T cd05063         180 EAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN---HEVMKAINDG-FRLP--APMDCPSAVYQLMLQCWQQDRAR  253 (268)
T ss_pred             HHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH---HHHHHHHhcC-CCCC--CCCCCCHHHHHHHHHHcCCCccc
Confidence            44445567889999999999999998 9999531100   0000111110 0000  01112234678899999999999


Q ss_pred             CCChHHHHHHHHhc
Q 003931          750 RPSMRFVAQELSAK  763 (785)
Q Consensus       750 Rp~m~~vv~~l~~~  763 (785)
                      ||+|.+|++.|.++
T Consensus       254 Rp~~~~i~~~l~~~  267 (268)
T cd05063         254 RPRFVDIVNLLDKL  267 (268)
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.42  E-value=6.2e-08  Score=99.89  Aligned_cols=92  Identities=20%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccC---cc---cccccccCCCCCCCchhHHHHHHHHHHH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSG---EL---FLKDVLDQRLPPPTGQLAEAVVLTINVA  739 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~---~~---~~~~~~d~~l~~~~~~~~~~~~~~~~ia  739 (785)
                      |+.....++.++||||||+++.|++||+.|..-     ..++..   ..   ...+.+......+  ....+...+.+++
T Consensus       182 e~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li  259 (284)
T cd05038         182 ECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLP--RPPSCPDEVYDLM  259 (284)
T ss_pred             HHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCC--CCccCCHHHHHHH
Confidence            444556778899999999999999999998541     111000   00   0111111111110  0111224567889


Q ss_pred             hhcCCCCCCCCCChHHHHHHHHhcc
Q 003931          740 LACTSTTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       740 l~C~~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      ..|...+|++||+|.||+++|++++
T Consensus       260 ~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         260 KLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             HHHhccChhhCCCHHHHHHHHhhcC
Confidence            9999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.42  E-value=1.1e-07  Score=98.56  Aligned_cols=84  Identities=24%  Similarity=0.373  Sum_probs=57.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.|+|||||||++.|++| |+.|..      .......         ........   .+...+.++...|+
T Consensus       195 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~li~~~l  262 (291)
T cd05094         195 ESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQ---------GRVLERPR---VCPKEVYDIMLGCW  262 (291)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhC---------CCCCCCCc---cCCHHHHHHHHHHc
Confidence            44445667889999999999999999 999853      1111111         01100000   01123567889999


Q ss_pred             CCCCCCCCChHHHHHHHHhcccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      +.+|++||+|.+|+++|.++...
T Consensus       263 ~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         263 QREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             ccChhhCcCHHHHHHHHHHHHhh
Confidence            99999999999999999998553

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.42  E-value=1e-07  Score=108.67  Aligned_cols=84  Identities=30%  Similarity=0.428  Sum_probs=62.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+-..+..|+|+|||||||++-|++| |..|..      +...|.+++        +|..+    ..|-.++.+|...|+
T Consensus       874 Esl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg--------RL~~P----~~CP~~ly~lM~~CW  941 (1025)
T KOG1095|consen  874 ESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG--------RLDPP----SYCPEKLYQLMLQCW  941 (1025)
T ss_pred             HHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC--------ccCCC----CCCChHHHHHHHHHc
Confidence            77788999999999999999999999 566632      222222222        33322    234456678999999


Q ss_pred             CCCCCCCCChHHHHHHHHhcccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      +.+|++||+.++++..+..|...
T Consensus       942 ~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  942 KHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             cCChhhCccHHHHHhhhhhhhhh
Confidence            99999999999999998877543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=3.4e-09  Score=101.05  Aligned_cols=176  Identities=22%  Similarity=0.190  Sum_probs=77.5

Q ss_pred             CcEEEccCCCCcccC-CccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCC-Ccc-cCCccccCCCCCcEE
Q 003931           55 LTHLGLYLNELTLEF-PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ-FQG-KLSPNVSKLSNLIDL  131 (785)
Q Consensus        55 L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L  131 (785)
                      |+++||+...|+... -..+..|.+|+.|.+.++++.+.+...+ +.-.+|+.|+|+.+. ++. ...-.+..|+.|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            455555544443111 1123344455555555555544443333 444555555555432 110 011123445555555


Q ss_pred             EcCCCcccccC-CcCCCC-CCCCCEEEcccCccc---ccCCccccCCCCCCEEEcccCc-CcccCCccccCCcccCeeec
Q 003931          132 RLATNKFSGPI-PGDIGS-MSNLQLVELFNNSFT---GQIPSSLGQLKNLQHLDLRMNA-LNYTIPPELGLCTNLSYLAL  205 (785)
Q Consensus       132 ~L~~n~~~~~~-~~~l~~-l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  205 (785)
                      ++++|.+.... ...+.. -++|..|+++++.-.   ..+..-..++++|.+|||++|. ++......|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            55555443211 001111 134555555554211   1111123455666666666654 22222334455666666666


Q ss_pred             cccccccCCchh---ccCCCCCCEEEccCCC
Q 003931          206 AVNQLSGGLPLS---LSNLSKLNDLGLSDNF  233 (785)
Q Consensus       206 ~~n~i~~~~~~~---l~~l~~L~~L~L~~n~  233 (785)
                      +.|..  .+|..   +...+.|.+|++.++-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            65542  33332   3455667777666553

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.39  E-value=1.2e-07  Score=97.61  Aligned_cols=87  Identities=21%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+|||||||++.|++| |+.|..-..    .....+.+.......  ....+-..+.++...|++.+|+
T Consensus       195 PE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~----~~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~c~~~~p~  268 (283)
T cd05048         195 PEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS----NQEVIEMIRSRQLLP--CPEDCPARVYALMIECWNEIPA  268 (283)
T ss_pred             HHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC----HHHHHHHHHcCCcCC--CcccCCHHHHHHHHHHccCChh
Confidence            355555677899999999999999998 998853100    000111111110000  0011223456778899999999


Q ss_pred             CCCChHHHHHHHHh
Q 003931          749 TRPSMRFVAQELSA  762 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~  762 (785)
                      +||+|+||++.|+.
T Consensus       269 ~Rp~~~~i~~~l~~  282 (283)
T cd05048         269 RRPRFKDIHTRLRS  282 (283)
T ss_pred             hCcCHHHHHHHHhc
Confidence            99999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.7e-09  Score=100.16  Aligned_cols=177  Identities=23%  Similarity=0.253  Sum_probs=123.4

Q ss_pred             CCCEEEcccCcCccc-CCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCC-CccccCccccCCCCCCCEE
Q 003931          175 NLQHLDLRMNALNYT-IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF-LSGEISANLIGNWTELESL  252 (785)
Q Consensus       175 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L  252 (785)
                      .|++|||+...++.. ....+..|.+|+.|.+.++++.+.+...+++..+|+.|+++.+. ++..--.-.+.+++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588899988877632 22345678899999999999988888888888999999998874 3322222346788999999


Q ss_pred             EeecCcCcccCCcc-Cc-CCCCCcEEECcCccc--c-ccCChhccCCCCCCEEECcCCc-ccccCCccCcCCCCCCEEEc
Q 003931          253 QIQNNSFMGNIPPE-IG-LLTKLQYLFLYRNNF--S-GPIPSEIEKLTSLENLDLSGNQ-LSGTIPPTLWNLTNLLSLQL  326 (785)
Q Consensus       253 ~L~~n~l~~~~~~~-~~-~l~~L~~L~L~~n~l--~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L  326 (785)
                      ++++|.+....-.. +. --++|+.|+|+++.-  . ..+..-...+++|.+||||+|. ++...-..|..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            99999876543221 11 125788888888732  1 1222233568999999999874 44333445778889999999


Q ss_pred             ccccccCCCCCC---CCCCCCCCEEEccCC
Q 003931          327 FSNNLSGTIPPE---IGSMASLVAFDVNTN  353 (785)
Q Consensus       327 ~~n~l~~~~p~~---~~~l~~L~~L~l~~n  353 (785)
                      +.|..  ++|..   +...++|.+||+.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            98864  45543   466788888887654

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.36  E-value=1.6e-07  Score=95.24  Aligned_cols=82  Identities=26%  Similarity=0.406  Sum_probs=57.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |.......+.++|||||||++.|++| |+.|.+      +..++.....        ...+.    .....+.++...|+
T Consensus       168 E~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~--------~~~~~----~~~~~l~~li~~cl  235 (257)
T cd05060         168 ECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGER--------LPRPE----ECPQEIYSIMLSCW  235 (257)
T ss_pred             HHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCc--------CCCCC----CCCHHHHHHHHHHh
Confidence            44455667889999999999999998 898854      2222211110        00000    11134567889999


Q ss_pred             CCCCCCCCChHHHHHHHHhcc
Q 003931          744 STTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      ..+|++||++.+|++.|+++.
T Consensus       236 ~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         236 KYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             cCChhhCcCHHHHHHHHHhcc
Confidence            999999999999999998864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.36  E-value=1.8e-07  Score=96.21  Aligned_cols=87  Identities=26%  Similarity=0.416  Sum_probs=56.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.++|||||||+++|++| |+.|..-....    ...+++..  ....+.    .+...+.++...|.+.+|
T Consensus       181 E~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~li~~c~~~~p  252 (279)
T cd05111         181 ESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH----EVPDLLEKGERLAQPQ----ICTIDVYMVMVKCWMIDE  252 (279)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH----HHHHHHHCCCcCCCCC----CCCHHHHHHHHHHcCCCc
Confidence            44445667899999999999999998 98885311000    00111110  000000    011234567789999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||+|.|++++|..+..
T Consensus       253 ~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         253 NVRPTFKELANEFTRMAR  270 (279)
T ss_pred             ccCcCHHHHHHHHHHHHh
Confidence            999999999999988654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=1.5e-07  Score=90.01  Aligned_cols=227  Identities=22%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             CccEEECCCCCCcccCChhhh-cCCCCCcEEECCCCCCcc--cCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCE
Q 003931           78 NLTYLDLSLNKLSGLIPERLF-TNLGKLEYLNLTENQFQG--KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQL  154 (785)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~~f-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  154 (785)
                      .+..+-+.++.|...-....| ..++.++++||.+|.|+.  .+...+.+++.|+.|+++.|.+...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            444555555555422111112 235566777777776662  22233456677777777777666332211134567777


Q ss_pred             EEcccCcccc-cCCccccCCCCCCEEEcccCcCcccC--Ccccc-CCcccCeeeccccccccCCchhccCCCCCCEEEcc
Q 003931          155 VELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTI--PPELG-LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS  230 (785)
Q Consensus       155 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~-~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  230 (785)
                      |-|.+..+.- .....+..+|.++.|.++.|.+...-  .+... --+.+++++...|..               .+..+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~---------------~~w~~  190 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE---------------QLWLN  190 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH---------------HHHHH
Confidence            7777765542 12234556677777777766432100  00000 011223332222211               11111


Q ss_pred             CCCCccccCccccCCCCCCCEEEeecCcCccc-CCccCcCCCCCcEEECcCccccc-cCChhccCCCCCCEEECcCCccc
Q 003931          231 DNFLSGEISANLIGNWTELESLQIQNNSFMGN-IPPEIGLLTKLQYLFLYRNNFSG-PIPSEIEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       231 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~  308 (785)
                      -|++.        .-++++..+.+..|.+... ....+..++.+--|+|+.|++.. .--+++..+++|..|.+++|++.
T Consensus       191 ~~~l~--------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  191 KNKLS--------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             HHhHH--------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            22211        1233444444444433221 11223344555566666666632 11244566777777777777766


Q ss_pred             ccCCc------cCcCCCCCCEEEcc
Q 003931          309 GTIPP------TLWNLTNLLSLQLF  327 (785)
Q Consensus       309 ~~~p~------~l~~l~~L~~L~L~  327 (785)
                      +..-.      -++.+++++.|+=+
T Consensus       263 d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  263 DPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             ccccCCcceEEEEeeccceEEecCc
Confidence            44322      24567777776533

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.35  E-value=2.4e-07  Score=94.25  Aligned_cols=88  Identities=23%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||+++|++| |+.|......-...........+....   .   .-..+.++...|.+.+|+
T Consensus       174 PE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~li~~cl~~~p~  247 (263)
T cd05052         174 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPE---G---CPPKVYELMRACWQWNPS  247 (263)
T ss_pred             HHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCC---C---CCHHHHHHHHHHccCCcc
Confidence            455555677889999999999999999 888853110000000000001111111   1   112355677899999999


Q ss_pred             CCCChHHHHHHHHhc
Q 003931          749 TRPSMRFVAQELSAK  763 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~  763 (785)
                      +||+|.+|.++|+.+
T Consensus       248 ~Rp~~~~l~~~l~~~  262 (263)
T cd05052         248 DRPSFAEIHQAFETM  262 (263)
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999999764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=98.35  E-value=1.3e-07  Score=100.26  Aligned_cols=91  Identities=25%  Similarity=0.324  Sum_probs=57.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+|||||||++.|++| |+.|..-...  .+.....+.+........   ..-..+.+++..|.+.+|+
T Consensus       245 PE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~cl~~dp~  319 (338)
T cd05102         245 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI--NEEFCQRLKDGTRMRAPE---NATPEIYRIMLACWQGDPK  319 (338)
T ss_pred             cHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCc--cHHHHHHHhcCCCCCCCC---CCCHHHHHHHHHHccCChh
Confidence            354455667899999999999999997 9988531100  000000011111000000   1112356788999999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||+|.||+++|+++..
T Consensus       320 ~RPs~~el~~~l~~~~~  336 (338)
T cd05102         320 ERPTFSALVEILGDLLQ  336 (338)
T ss_pred             hCcCHHHHHHHHHHHHh
Confidence            99999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.35  E-value=1.6e-07  Score=97.12  Aligned_cols=82  Identities=28%  Similarity=0.421  Sum_probs=56.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++||||||+++.|++| |+.|.+      +..++...      ..+....   .   .-..+.+++..|.
T Consensus       199 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~------~~~~~~~---~---~~~~~~~~i~~cl  266 (290)
T cd05045         199 ESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTG------YRMERPE---N---CSEEMYNLMLTCW  266 (290)
T ss_pred             HHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCC------CCCCCCC---C---CCHHHHHHHHHHc
Confidence            44445667899999999999999999 887743      11111110      0011110   1   1123557788999


Q ss_pred             CCCCCCCCChHHHHHHHHhcc
Q 003931          744 STTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      +.+|++||+|.||+++|+++-
T Consensus       267 ~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         267 KQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             cCCcccCCCHHHHHHHHHHHH
Confidence            999999999999999998864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.33  E-value=2.2e-07  Score=95.62  Aligned_cols=83  Identities=28%  Similarity=0.381  Sum_probs=57.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++|||||||++.|++| |+.|.+      +..++......        .... .   +-..+.+++..|+
T Consensus       189 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--------~~~~-~---~~~~~~~li~~~l  256 (280)
T cd05043         189 ESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRL--------AQPI-N---CPDELFAVMACCW  256 (280)
T ss_pred             HHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCC--------CCCC-c---CCHHHHHHHHHHc
Confidence            44445567899999999999999999 999864      22222211111        0000 0   1123567888999


Q ss_pred             CCCCCCCCChHHHHHHHHhccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ..+|++||++.||+++|.++.+
T Consensus       257 ~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         257 ALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             CCChhhCCCHHHHHHHHHHHHh
Confidence            9999999999999999998765

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=98.32  E-value=2e-07  Score=94.43  Aligned_cols=78  Identities=27%  Similarity=0.468  Sum_probs=53.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++|||||||++.|++| |+.|..      .+..+....+   ...+..         ....+.+++..|+
T Consensus       171 E~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~---~~~~~~---------~~~~~~~li~~c~  238 (256)
T cd05114         171 EVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFR---LYRPKL---------ASMTVYEVMYSCW  238 (256)
T ss_pred             hhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCC---CCCCCC---------CCHHHHHHHHHHc
Confidence            44444567789999999999999999 888853      1222211110   011111         1124568889999


Q ss_pred             CCCCCCCCChHHHHHHH
Q 003931          744 STTPDTRPSMRFVAQEL  760 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l  760 (785)
                      +.+|++||+|.|++++|
T Consensus       239 ~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         239 HEKPEGRPTFAELLRAI  255 (256)
T ss_pred             cCCcccCcCHHHHHHhh
Confidence            99999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.32  E-value=1.9e-07  Score=96.31  Aligned_cols=92  Identities=21%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCch--hhhcc---Cccc-------ccccccCCCCCCCchhHHHHHHHHHH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL--ITSLS---GELF-------LKDVLDQRLPPPTGQLAEAVVLTINV  738 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~--~~~~~---~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~i  738 (785)
                      |+......+.++|||||||+++|++||+.|...  ..+..   ....       ..++++.....+  .....-..+.++
T Consensus       181 E~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  258 (284)
T cd05081         181 ESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLP--APPGCPAEIYAI  258 (284)
T ss_pred             HHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCC--CCCCCCHHHHHH
Confidence            444445677899999999999999999876431  11111   1100       001111110000  000111246678


Q ss_pred             HhhcCCCCCCCCCChHHHHHHHHhcc
Q 003931          739 ALACTSTTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       739 al~C~~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      +..|++.+|++||+|.||+++|+.++
T Consensus       259 i~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         259 MKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             HHHHccCChhhCCCHHHHHHHHHhcC
Confidence            88999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=1.2e-08  Score=108.78  Aligned_cols=199  Identities=26%  Similarity=0.232  Sum_probs=129.8

Q ss_pred             cCCCCCcEEECCCCCCcccC-CccccCCCCCcEEEcCCCcccccCCcCCCCC-CCCCEEEcccCccc----------ccC
Q 003931           99 TNLGKLEYLNLTENQFQGKL-SPNVSKLSNLIDLRLATNKFSGPIPGDIGSM-SNLQLVELFNNSFT----------GQI  166 (785)
Q Consensus        99 ~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~~~----------~~~  166 (785)
                      .-+++++.|.+-.-.-.+.- |-.+..+..|+.|.+.++.+...  ..+..+ ..|++|-..+ .+.          |.+
T Consensus        81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDI  157 (1096)
T ss_pred             HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccc
Confidence            33555555555443322221 55677788899999988887631  111111 2344443222 111          111


Q ss_pred             CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC
Q 003931          167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW  246 (785)
Q Consensus       167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  246 (785)
                      ..++ ....|...+.++|.+. .+...+.-++.++.|+|++|+++..  ..+..+++|++|||++|.+. .+|.--...+
T Consensus       158 ~ns~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc  232 (1096)
T KOG1859|consen  158 SNSP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC  232 (1096)
T ss_pred             ccch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh
Confidence            1111 1236777888888887 5666778888999999999999754  37888999999999999987 6665323344


Q ss_pred             CCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCC-hhccCCCCCCEEECcCCccc
Q 003931          247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP-SEIEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~  308 (785)
                      . |+.|.+++|.++..  ..+.++.+|+.||+++|-+.+.-. ..+..+..|+.|+|.+|++.
T Consensus       233 ~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4 99999999988754  357788899999999998764211 22455678889999999876

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.32  E-value=3.7e-07  Score=94.57  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=56.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||+++|+++ |..|..-...    ....+.+.......  ....+...+.+++..|++.+|+
T Consensus       203 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~  276 (293)
T cd05053         203 PEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV----EELFKLLKEGYRME--KPQNCTQELYHLMRDCWHEVPS  276 (293)
T ss_pred             HHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCH----HHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHcccCcc
Confidence            455455667899999999999999998 8887421000    00000000000000  0001123456789999999999


Q ss_pred             CCCChHHHHHHHHhcc
Q 003931          749 TRPSMRFVAQELSAKT  764 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~  764 (785)
                      +||+|.||++.|+++.
T Consensus       277 ~Rps~~eil~~l~~~~  292 (293)
T cd05053         277 QRPTFKQLVEDLDRML  292 (293)
T ss_pred             cCcCHHHHHHHHHHhh
Confidence            9999999999998763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.31  E-value=2.9e-07  Score=94.26  Aligned_cols=87  Identities=18%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++||||||+++.|++| |+.|..-..   .......+.+.......   ......+.+++..|.+.+|++
T Consensus       185 e~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~l~~~p~~  258 (273)
T cd05035         185 ESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE---NHEIYDYLRHGNRLKQP---EDCLDELYDLMYSCWRADPKD  258 (273)
T ss_pred             hhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC---HHHHHHHHHcCCCCCCC---cCCCHHHHHHHHHHcCCChhh
Confidence            44445567889999999999999999 777742100   00001111111110000   112234567778899999999


Q ss_pred             CCChHHHHHHHHhc
Q 003931          750 RPSMRFVAQELSAK  763 (785)
Q Consensus       750 Rp~m~~vv~~l~~~  763 (785)
                      ||+|.||++.|+++
T Consensus       259 Rp~~~e~~~~l~~~  272 (273)
T cd05035         259 RPTFTKLREVLENI  272 (273)
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999999865

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.30  E-value=2.4e-07  Score=94.20  Aligned_cols=83  Identities=28%  Similarity=0.365  Sum_probs=55.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC-c------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG-E------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~-~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.|+|||||||++.|++||+.|. .      ++.++....        ....+. .   ....+.++...|
T Consensus       171 PE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~---~~~~~~~li~~c  238 (262)
T cd05058         171 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGR--------RLLQPE-Y---CPDPLYEVMLSC  238 (262)
T ss_pred             hhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCC--------CCCCCC-c---CCHHHHHHHHHH
Confidence            34444566788999999999999999976652 1      111111110        000000 0   112356788999


Q ss_pred             CCCCCCCCCChHHHHHHHHhcc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      .+.+|++||++.||+++++++.
T Consensus       239 l~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         239 WHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             cCCChhhCCCHHHHHHHHHHHh
Confidence            9999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.30  E-value=2.6e-07  Score=96.27  Aligned_cols=83  Identities=29%  Similarity=0.438  Sum_probs=56.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++|||||||+++|++| |+.|..      +..++....        ....+.    .+...+.++...|+
T Consensus       181 E~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~li~~c~  248 (303)
T cd05110         181 ECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGE--------RLPQPP----ICTIDVYMVMVKCW  248 (303)
T ss_pred             HHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCC--------CCCCCC----CCCHHHHHHHHHHc
Confidence            44445667889999999999999998 888853      111111110        110000    11234567789999


Q ss_pred             CCCCCCCCChHHHHHHHHhccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ..+|++||+|.||++++.++..
T Consensus       249 ~~~p~~Rp~~~~l~~~l~~~~~  270 (303)
T cd05110         249 MIDADSRPKFKELAAEFSRMAR  270 (303)
T ss_pred             CCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999987643

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.29  E-value=2.2e-07  Score=98.14  Aligned_cols=90  Identities=21%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+|||||||+++|++| |+.|..-..   ......+.+.......  ........+.+++..|++.+|+
T Consensus       244 PE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~cl~~~p~  318 (337)
T cd05054         244 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ---IDEEFCRRLKEGTRMR--APEYATPEIYSIMLDCWHNNPE  318 (337)
T ss_pred             cHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCC---ccHHHHHHHhccCCCC--CCccCCHHHHHHHHHHccCChh
Confidence            455556778999999999999999998 988852100   0000000000000000  0001123466888999999999


Q ss_pred             CCCChHHHHHHHHhcc
Q 003931          749 TRPSMRFVAQELSAKT  764 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~  764 (785)
                      +||++.||+++|.++-
T Consensus       319 ~RPs~~ell~~l~~~~  334 (337)
T cd05054         319 DRPTFSELVEILGDLL  334 (337)
T ss_pred             hCcCHHHHHHHHHHHH
Confidence            9999999999998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=98.29  E-value=2.6e-07  Score=93.96  Aligned_cols=86  Identities=28%  Similarity=0.390  Sum_probs=54.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++|||||||+++|++| |+.|..-..    .......++.....+  ........+.+++..|++.+|++
T Consensus       174 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~P~~  247 (261)
T cd05068         174 EAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT----NAEVLQQVDQGYRMP--CPPGCPKELYDIMLDCWKEDPDD  247 (261)
T ss_pred             cccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCCCCC--CCCcCCHHHHHHHHHHhhcCccc
Confidence            44445567899999999999999999 887743000    000000011100000  00011234567888999999999


Q ss_pred             CCChHHHHHHHHh
Q 003931          750 RPSMRFVAQELSA  762 (785)
Q Consensus       750 Rp~m~~vv~~l~~  762 (785)
                      ||+|.++++.|++
T Consensus       248 Rp~~~~l~~~l~~  260 (261)
T cd05068         248 RPTFETLQWKLED  260 (261)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.28  E-value=3.3e-07  Score=93.72  Aligned_cols=86  Identities=27%  Similarity=0.307  Sum_probs=56.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+......+.++|||||||+++|++| |+.|..-...   .. ..+.+..  ......    ..-..+.+++..|++.+
T Consensus       180 pE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~---~~-~~~~~~~~~~~~~~~----~~~~~~~~li~~~l~~~  251 (270)
T cd05047         180 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC---AE-LYEKLPQGYRLEKPL----NCDDEVYDLMRQCWREK  251 (270)
T ss_pred             hHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH---HH-HHHHHhCCCCCCCCC----cCCHHHHHHHHHHcccC
Confidence            355555667889999999999999997 8888531100   00 0000011  110000    11123568889999999


Q ss_pred             CCCCCChHHHHHHHHhc
Q 003931          747 PDTRPSMRFVAQELSAK  763 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~  763 (785)
                      |.+||+|.||+++|.++
T Consensus       252 p~~Rps~~~il~~l~~~  268 (270)
T cd05047         252 PYERPSFAQILVSLNRM  268 (270)
T ss_pred             hhhCCCHHHHHHHHHHh
Confidence            99999999999999875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.27  E-value=2.1e-07  Score=95.03  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-....   .....+.+.........  .....+.++...|++.+|++
T Consensus       182 Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~l~~li~~cl~~~p~~  256 (269)
T cd08528         182 PEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNML---SLATKIVEAVYEPLPEG--MYSEDVTDVITSCLTPDAEA  256 (269)
T ss_pred             hhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHH---HHHHHHhhccCCcCCcc--cCCHHHHHHHHHHCCCCCcc
Confidence            35555566789999999999999999999995311000   00001111111100000  00122445667899999999


Q ss_pred             CCChHHHHHHHH
Q 003931          750 RPSMRFVAQELS  761 (785)
Q Consensus       750 Rp~m~~vv~~l~  761 (785)
                      ||+|.||++++.
T Consensus       257 Rp~~~e~~~~~~  268 (269)
T cd08528         257 RPDIIQVSAMIS  268 (269)
T ss_pred             CCCHHHHHHHhc
Confidence            999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=98.27  E-value=4.2e-07  Score=92.83  Aligned_cols=82  Identities=29%  Similarity=0.502  Sum_probs=55.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++| |+.|..      ...++..        +......    .++...+.+++..|
T Consensus       180 PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~--------~~~~~~~----~~~~~~~~~li~~~  247 (269)
T cd05065         180 PEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQ--------DYRLPPP----MDCPTALHQLMLDC  247 (269)
T ss_pred             HhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHc--------CCcCCCc----ccCCHHHHHHHHHH
Confidence            355555677889999999999999987 998853      1111110        0011111    11123355778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      .+.+|++||+|.+|+++|+++
T Consensus       248 l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         248 WQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             cCCChhhCcCHHHHHHHHHhh
Confidence            999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.26  E-value=4.9e-07  Score=93.87  Aligned_cols=95  Identities=24%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.||+| |+.|..-...    ....+.+..........  ..-..+.+++..|++.+|.
T Consensus       187 PE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p~  260 (297)
T cd05089         187 IESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC----AELYEKLPQGYRMEKPR--NCDDEVYELMRQCWRDRPY  260 (297)
T ss_pred             chhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHHhcCCCCCCCC--CCCHHHHHHHHHHcCCChh
Confidence            344445567889999999999999998 9888520000    00000111111000000  0112355778899999999


Q ss_pred             CCCChHHHHHHHHhcccccCCC
Q 003931          749 TRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      +||+|.+|+++|..+...+.+.
T Consensus       261 ~Rp~~~~i~~~l~~~~~~~~~~  282 (297)
T cd05089         261 ERPPFAQISVQLSRMLEARKAY  282 (297)
T ss_pred             hCcCHHHHHHHHHHHHHhhccc
Confidence            9999999999999887765444

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=98.26  E-value=4.8e-07  Score=92.30  Aligned_cols=92  Identities=17%  Similarity=0.165  Sum_probs=56.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||+++|++||+.|...-..  ......+.+......+. .....-..+.++...|+..+|++
T Consensus       175 pE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~cl~~~p~~  251 (267)
T cd08224         175 PERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM--NLYSLCKKIEKCDYPPL-PADHYSEELRDLVSRCINPDPEK  251 (267)
T ss_pred             HHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCc--cHHHHHhhhhcCCCCCC-ChhhcCHHHHHHHHHHcCCCccc
Confidence            3544555678899999999999999999999531100  00000000000000000 00011123556778899999999


Q ss_pred             CCChHHHHHHHHhcc
Q 003931          750 RPSMRFVAQELSAKT  764 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~  764 (785)
                      ||++.+|++++++++
T Consensus       252 Rp~~~~il~~~~~~~  266 (267)
T cd08224         252 RPDISYVLQVAKEMH  266 (267)
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.25  E-value=5.7e-07  Score=91.76  Aligned_cols=88  Identities=17%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhh--hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELIT--SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+......+.++|||||||++.|++||+.|...-.  .........+...+....  ..   .-..+..+...|++.+|+
T Consensus       176 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~li~~~l~~~p~  250 (267)
T cd08229         176 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPS--DH---YSEELRQLVNMCINPDPE  250 (267)
T ss_pred             HHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCc--cc---ccHHHHHHHHHhcCCCcc
Confidence            44445567789999999999999999999952100  000000111111111111  01   112344566789999999


Q ss_pred             CCCChHHHHHHHHhc
Q 003931          749 TRPSMRFVAQELSAK  763 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~  763 (785)
                      +||+|.+|++++.+.
T Consensus       251 ~Rpt~~~i~~~~~~~  265 (267)
T cd08229         251 KRPDITYVYDVAKRM  265 (267)
T ss_pred             cCCCHHHHHHHHhhh
Confidence            999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.25  E-value=4.7e-07  Score=93.54  Aligned_cols=90  Identities=20%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++|||||||++.|++| |+.|..-...   ......+...........   .-..+.++...|++.+|.+
T Consensus       192 E~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~---~~~~~~i~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~  265 (288)
T cd05093         192 ESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN---NEVIECITQGRVLQRPRT---CPKEVYDLMLGCWQREPHM  265 (288)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHHHcCCcCCCCCC---CCHHHHHHHHHHccCChhh
Confidence            44445567889999999999999999 8888431100   000000000000000000   1123678899999999999


Q ss_pred             CCChHHHHHHHHhcccc
Q 003931          750 RPSMRFVAQELSAKTQA  766 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~~  766 (785)
                      ||+|.||.+.|+++...
T Consensus       266 Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         266 RLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=98.25  E-value=4e-07  Score=95.45  Aligned_cols=87  Identities=28%  Similarity=0.453  Sum_probs=57.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.++|||||||++.|++| |+.|.+-....    ...+++..  ....+.    .+...+.+++..|.+.+|
T Consensus       181 E~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~li~~cl~~~p  252 (316)
T cd05108         181 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS----EISSILEKGERLPQPP----ICTIDVYMIMVKCWMIDA  252 (316)
T ss_pred             HHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH----HHHHHHhCCCCCCCCC----CCCHHHHHHHHHHccCCh
Confidence            44445667899999999999999998 99986411000    00011111  111010    112345678889999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||+|.+|+..+.++..
T Consensus       253 ~~Rps~~~l~~~l~~~~~  270 (316)
T cd05108         253 DSRPKFRELIIEFSKMAR  270 (316)
T ss_pred             hhCcCHHHHHHHHHHHHc
Confidence            999999999999987654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=98.24  E-value=5.1e-07  Score=91.74  Aligned_cols=80  Identities=20%  Similarity=0.311  Sum_probs=54.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+-.....+.++|||||||++.|++| |+.|..      ...++..      ........   .   .-..+.++...|+
T Consensus       174 E~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~------~~~~~~~~---~---~~~~~~~li~~~l  241 (261)
T cd05072         174 EAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQR------GYRMPRME---N---CPDELYDIMKTCW  241 (261)
T ss_pred             HHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHc------CCCCCCCC---C---CCHHHHHHHHHHc
Confidence            44445667889999999999999999 888842      1111111      00100000   1   1123567788999


Q ss_pred             CCCCCCCCChHHHHHHHHh
Q 003931          744 STTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~  762 (785)
                      ..+|++||+|.++.++|++
T Consensus       242 ~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         242 KEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             cCCcccCcCHHHHHHHHhc
Confidence            9999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=98.24  E-value=4.7e-07  Score=91.74  Aligned_cols=85  Identities=25%  Similarity=0.339  Sum_probs=54.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-....++.++|||||||++.|++| |+.|.+................+....      .....+.+++..|+..+|+
T Consensus       170 Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~cl~~~p~  243 (256)
T cd05059         170 PEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPK------LAPTEVYTIMYSCWHEKPE  243 (256)
T ss_pred             HHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCC------CCCHHHHHHHHHHhcCChh
Confidence            355555677889999999999999999 787753111100000011111111111      0123466889999999999


Q ss_pred             CCCChHHHHHHH
Q 003931          749 TRPSMRFVAQEL  760 (785)
Q Consensus       749 ~Rp~m~~vv~~l  760 (785)
                      +||+|.||+++|
T Consensus       244 ~Rpt~~~~l~~l  255 (256)
T cd05059         244 DRPAFKKLLSQL  255 (256)
T ss_pred             hCcCHHHHHHHh
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=98.24  E-value=5.1e-07  Score=92.13  Aligned_cols=86  Identities=20%  Similarity=0.210  Sum_probs=55.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc-----hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-----LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-----~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      |+-.+...+.++|||||||++.|++||+.|..     ...+..   .......+...     ....-..+.++...|++.
T Consensus       176 E~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~li~~cl~~  247 (267)
T cd08228         176 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQ---KIEQCDYPPLP-----TEHYSEKLRELVSMCIYP  247 (267)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHH---HHhcCCCCCCC-----hhhcCHHHHHHHHHHCCC
Confidence            44444556789999999999999999999942     011100   00111111111     011112345667789999


Q ss_pred             CCCCCCChHHHHHHHHhcc
Q 003931          746 TPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~  764 (785)
                      +|++||++.+|.+.+++++
T Consensus       248 ~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         248 DPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             CcccCcCHHHHHHHHHHhc
Confidence            9999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=98.23  E-value=9.1e-07  Score=92.06  Aligned_cols=98  Identities=27%  Similarity=0.346  Sum_probs=61.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc-hhh----hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-LIT----SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-~~~----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      |.-..--+++|.|||||||||.||+||.-|.. +..    |-....    .+  .+..+.    .|--...-+.-.|+..
T Consensus       281 EvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsN----sL--~LpvPs----tcP~GfklL~Kqcw~s  350 (904)
T KOG4721|consen  281 EVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSN----SL--HLPVPS----TCPDGFKLLLKQCWNS  350 (904)
T ss_pred             HHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCC----cc--cccCcc----cCchHHHHHHHHHHhc
Confidence            55555678999999999999999999999953 111    111111    11  111111    1111112234579999


Q ss_pred             CCCCCCChHHHHHHHHhcccccCCCCcchhhHH
Q 003931          746 TPDTRPSMRFVAQELSAKTQAYLPEPLDTMRIS  778 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~~~~~~~~~~~~~~  778 (785)
                      -|..||+++++..-|+=.+......+.+.++..
T Consensus       351 KpRNRPSFrqil~HldIa~pell~~tee~yf~s  383 (904)
T KOG4721|consen  351 KPRNRPSFRQILLHLDIASPELLSTTEETYFKS  383 (904)
T ss_pred             CCCCCccHHHHHHHHhhcCHHHhcccHHHHHHH
Confidence            999999999999888755555555555544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=1.6e-07  Score=89.96  Aligned_cols=89  Identities=21%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCCccEEECCCCCCcccCC-hhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCccccc-CCcCCCCCCCC
Q 003931           75 TCRNLTYLDLSLNKLSGLIP-ERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP-IPGDIGSMSNL  152 (785)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L  152 (785)
                      .++.++.+||.+|.|++.-. ..+..++|.|++|+|++|.+...+...-..+.+|+.|-|.+..+.-. ....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45677788888887763211 12446788888888888887743322224566788888877765432 22345677888


Q ss_pred             CEEEcccCccc
Q 003931          153 QLVELFNNSFT  163 (785)
Q Consensus       153 ~~L~L~~n~~~  163 (785)
                      +.|+++.|.+.
T Consensus       149 telHmS~N~~r  159 (418)
T KOG2982|consen  149 TELHMSDNSLR  159 (418)
T ss_pred             hhhhhccchhh
Confidence            88888887543

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.22  E-value=6.9e-07  Score=90.49  Aligned_cols=79  Identities=27%  Similarity=0.485  Sum_probs=54.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++| |+.|.+      +.......   ....+++.     .    ...+.+++..|
T Consensus       170 Pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~-----~----~~~~~~l~~~~  237 (256)
T cd05112         170 PEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAG---FRLYKPRL-----A----SQSVYELMQHC  237 (256)
T ss_pred             HhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCC---CCCCCCCC-----C----CHHHHHHHHHH
Confidence            355555678889999999999999998 888853      11111100   01112221     1    12466789999


Q ss_pred             CCCCCCCCCChHHHHHHH
Q 003931          743 TSTTPDTRPSMRFVAQEL  760 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l  760 (785)
                      ++.+|++||+|.||+++|
T Consensus       238 l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         238 WKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             cccChhhCCCHHHHHHhh
Confidence            999999999999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=98.21  E-value=5.9e-07  Score=91.57  Aligned_cols=87  Identities=26%  Similarity=0.364  Sum_probs=54.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++||||||+++.|++| |+.|..  .+... .....+.+.......   ..+-..+.+++..|++.+|++
T Consensus       178 e~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~--~~~~~-~~~~~~~~~~~~~~~---~~~~~~l~~li~~cl~~~p~~  251 (266)
T cd05033         178 EAIAYRKFTSASDVWSFGIVMWEVMSYGERPYW--DMSNQ-DVIKAVEDGYRLPPP---MDCPSALYQLMLDCWQKDRNE  251 (266)
T ss_pred             hhhccCCCccccchHHHHHHHHHHHccCCCCCC--CCCHH-HHHHHHHcCCCCCCC---CCCCHHHHHHHHHHcCCCccc
Confidence            33344556789999999999999998 988852  11100 000011110000000   011123568889999999999


Q ss_pred             CCChHHHHHHHHhc
Q 003931          750 RPSMRFVAQELSAK  763 (785)
Q Consensus       750 Rp~m~~vv~~l~~~  763 (785)
                      ||+|.||.++|+++
T Consensus       252 Rp~~~ei~~~l~~~  265 (266)
T cd05033         252 RPTFSQIVSTLDKM  265 (266)
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=98.21  E-value=6.4e-07  Score=90.37  Aligned_cols=86  Identities=21%  Similarity=0.282  Sum_probs=54.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.+...+.++|||||||+++|++| |+.|.....-.................      .....+.+++..|++.+|+
T Consensus       163 PE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~p~  236 (250)
T cd05085         163 PEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQ------KCPDDVYKVMQRCWDYKPE  236 (250)
T ss_pred             HHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCC------CCCHHHHHHHHHHcccCcc
Confidence            455556678899999999999999999 888853110000000000000001100      1113456788999999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||+|.||+++|.
T Consensus       237 ~Rp~~~~l~~~l~  249 (250)
T cd05085         237 NRPKFSELQKELA  249 (250)
T ss_pred             cCCCHHHHHHHhc
Confidence            9999999999874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.21  E-value=5.2e-07  Score=91.40  Aligned_cols=85  Identities=20%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.+...+.|+|||||||++.|++||+.|.+...-............+....    ....-..+.++...|.+.+|++
T Consensus       168 PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~P~~  243 (256)
T cd06612         168 PEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSD----PEKWSPEFNDFVKKCLVKDPEE  243 (256)
T ss_pred             HHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCc----hhhcCHHHHHHHHHHHhcChhh
Confidence            355555678899999999999999999999964211100000000000011100    0000112456677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|.||++
T Consensus       244 Rps~~~il~  252 (256)
T cd06612         244 RPSAIQLLQ  252 (256)
T ss_pred             CcCHHHHhc
Confidence            999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=98.21  E-value=8.5e-07  Score=93.39  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCch-----hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      .-.|..+||||||+|+.||+||..|..+     .-|....+    .+-|++...   ...|-.+|-++...|+..+|++|
T Consensus       568 nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG----~l~pd~s~~---~s~~pk~mk~Ll~~C~~~~~~eR  640 (678)
T KOG0193|consen  568 NPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRG----YLMPDLSKI---RSNCPKAMKRLLSDCWKFDREER  640 (678)
T ss_pred             CCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEeccc----ccCccchhh---hccCHHHHHHHHHHHHhcCcccC
Confidence            3457889999999999999999999641     11111111    111222111   12344456688899999999999


Q ss_pred             CChHHHHHHHHhccc
Q 003931          751 PSMRFVAQELSAKTQ  765 (785)
Q Consensus       751 p~m~~vv~~l~~~~~  765 (785)
                      |...++..+|+.+..
T Consensus       641 P~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  641 PLFPQLLSKLEELLP  655 (678)
T ss_pred             ccHHHHHHHHHHhhh
Confidence            999999998877644

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.21  E-value=1.3e-06  Score=90.66  Aligned_cols=87  Identities=22%  Similarity=0.281  Sum_probs=53.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh--CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhh
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM--GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALA  741 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt--gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~  741 (785)
                      +|+....+.+.++|||||||++.|++|  |..|.+      ...++......   .+......  .....-..+.+++..
T Consensus       201 PE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~l~~li~~  275 (296)
T cd05051         201 WESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRD---DGRQIYLP--RPPNCPKDIYELMLE  275 (296)
T ss_pred             HHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhcccc---ccccccCC--CccCCCHHHHHHHHH
Confidence            355455678899999999999999998  555543      11111100000   00000000  000011346788999


Q ss_pred             cCCCCCCCCCChHHHHHHHH
Q 003931          742 CTSTTPDTRPSMRFVAQELS  761 (785)
Q Consensus       742 C~~~~p~~Rp~m~~vv~~l~  761 (785)
                      |.+.+|++||+|.||++.|+
T Consensus       276 cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         276 CWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HhccChhcCCCHHHHHHHhc
Confidence            99999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.20  E-value=4.3e-07  Score=92.10  Aligned_cols=87  Identities=24%  Similarity=0.313  Sum_probs=54.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++||||||++++||+| |+.|.+-............ .......+.    ..-..+.++...|.+.+|+
T Consensus       169 pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~li~~~l~~~p~  243 (257)
T cd05040         169 PESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDK-EGERLERPE----ACPQDIYNVMLQCWAHNPA  243 (257)
T ss_pred             HHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHh-cCCcCCCCc----cCCHHHHHHHHHHCCCCcc
Confidence            355555677889999999999999999 9999641111000000000 000110000    1113455778899999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||++.||++.|.
T Consensus       244 ~Rps~~~~~~~l~  256 (257)
T cd05040         244 DRPTFAALREFLP  256 (257)
T ss_pred             cCCCHHHHHHHhc
Confidence            9999999998874

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.20  E-value=5.5e-07  Score=92.41  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=54.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+..+...+.++|||||||++.|++| |+.|.+-.    ......+.+.........  ...-..+.++...|++.+|+
T Consensus       190 PE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~cl~~~p~  263 (277)
T cd05036         190 PEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR----TNQEVMEFVTGGGRLDPP--KGCPGPVYRIMTDCWQHTPE  263 (277)
T ss_pred             HHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC----CHHHHHHHHHcCCcCCCC--CCCCHHHHHHHHHHcCCCcc
Confidence            466666778999999999999999997 88885310    000011111110000000  00112456778899999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||++.+|++.|+
T Consensus       264 ~Rps~~~vl~~l~  276 (277)
T cd05036         264 DRPNFATILERIQ  276 (277)
T ss_pred             cCcCHHHHHHHhh
Confidence            9999999998875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.19  E-value=6.9e-07  Score=91.70  Aligned_cols=84  Identities=18%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-..-........+-..+.+..      .....+.++...|++.+|++
T Consensus       170 PE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~p~~  243 (277)
T cd06642         170 PEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEG------QYSKPFKEFVEACLNKDPRF  243 (277)
T ss_pred             HHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCCCCc------ccCHHHHHHHHHHccCCccc
Confidence            355555567889999999999999999999953100000000000011111111      11233557778899999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||+|.||++.
T Consensus       244 Rp~~~~il~~  253 (277)
T cd06642         244 RPTAKELLKH  253 (277)
T ss_pred             CcCHHHHHHh
Confidence            9999999873

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=98.18  E-value=6.9e-07  Score=91.09  Aligned_cols=88  Identities=26%  Similarity=0.305  Sum_probs=55.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.++|||||||++.|+++ |+.|..-...   ......+.+......   ...+-..+.++...|++.+|+
T Consensus       177 PE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~li~~c~~~~p~  250 (266)
T cd05064         177 PEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG---QDVIKAVEDGFRLPA---PRNCPNLLHQLMLDCWQKERG  250 (266)
T ss_pred             HHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH---HHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHcCCCch
Confidence            354455678899999999999999875 9998531000   000000111000000   011123455778899999999


Q ss_pred             CCCChHHHHHHHHhc
Q 003931          749 TRPSMRFVAQELSAK  763 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~  763 (785)
                      +||+|.++.+.|.++
T Consensus       251 ~RP~~~~i~~~l~~~  265 (266)
T cd05064         251 ERPRFSQIHSILSKM  265 (266)
T ss_pred             hCCCHHHHHHHHHhh
Confidence            999999999988754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.18  E-value=1e-06  Score=90.02  Aligned_cols=81  Identities=23%  Similarity=0.435  Sum_probs=54.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-..+..+.++|||||||++.|++| |+.|..      ...++...        ...... ...   -..+.++.-.|
T Consensus       182 PE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~--------~~~~~~-~~~---~~~~~~li~~~  249 (269)
T cd05044         182 PESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAG--------GRLQKP-ENC---PDKIYQLMTNC  249 (269)
T ss_pred             HHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcC--------CccCCc-ccc---hHHHHHHHHHH
Confidence            355556678899999999999999998 888842      11111100        001000 011   12345778899


Q ss_pred             CCCCCCCCCChHHHHHHHHh
Q 003931          743 TSTTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~  762 (785)
                      ...+|++||+|.+|.++|++
T Consensus       250 l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         250 WAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             cCCCcccCCCHHHHHHHHhC
Confidence            99999999999999998863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=98.17  E-value=7.8e-07  Score=95.46  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+......+.++|||||||++.|++| |+.|..-..   ......+.+....... ....   -..+.++...|.+.+|+
T Consensus       286 E~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~cl~~dP~  359 (375)
T cd05104         286 ESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMP---VDSKFYKMIKEGYRMLSPECA---PSEMYDIMKSCWDADPL  359 (375)
T ss_pred             hHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC---chHHHHHHHHhCccCCCCCCC---CHHHHHHHHHHccCChh
Confidence            44445567889999999999999998 777743100   0000000111100000 0000   12345778899999999


Q ss_pred             CCCChHHHHHHHHh
Q 003931          749 TRPSMRFVAQELSA  762 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~  762 (785)
                      +||+|.||+++|++
T Consensus       360 ~RPs~~eil~~l~~  373 (375)
T cd05104         360 KRPTFKQIVQLIEQ  373 (375)
T ss_pred             HCcCHHHHHHHHHh
Confidence            99999999999975

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.17  E-value=5.2e-07  Score=91.41  Aligned_cols=83  Identities=18%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.+...+.|+|||||||++.|++||+.|......   .....+++.........   ..-..+..+...|++.+|.+
T Consensus       170 pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~  243 (256)
T cd08218         170 PEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM---KNLVLKIIRGSYPPVSS---HYSYDLRNLVSQLFKRNPRD  243 (256)
T ss_pred             HHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCH---HHHHHHHhcCCCCCCcc---cCCHHHHHHHHHHhhCChhh
Confidence            3554556778999999999999999999998531000   00000111111000000   01123456677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|.||++
T Consensus       244 Rp~~~~vl~  252 (256)
T cd08218         244 RPSVNSILE  252 (256)
T ss_pred             CcCHHHHhh
Confidence            999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.17  E-value=1.3e-06  Score=90.98  Aligned_cols=91  Identities=23%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.|++| |+.|..-..............  ....+. .   .-..+.++...|.+.+|+
T Consensus       192 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~li~~~l~~~p~  265 (303)
T cd05088         192 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGY--RLEKPL-N---CDDEVYDLMRQCWREKPY  265 (303)
T ss_pred             HHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCC--cCCCCC-C---CCHHHHHHHHHHcCCChh
Confidence            344455567899999999999999998 888853110000000000000  000000 0   112346778899999999


Q ss_pred             CCCChHHHHHHHHhcccc
Q 003931          749 TRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~  766 (785)
                      +||+|.++++++.++...
T Consensus       266 ~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         266 ERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             hCcCHHHHHHHHHHHHHh
Confidence            999999999999876443

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.17  E-value=7.3e-07  Score=88.65  Aligned_cols=83  Identities=28%  Similarity=0.364  Sum_probs=57.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |--+....+..+|||||||++.|++| ||.|.-      ...+.+..        .++..+.    .|--+++.|...|+
T Consensus       468 Eal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdG--------yRlaQP~----NCPDeLf~vMacCW  535 (563)
T KOG1024|consen  468 EALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDG--------YRLAQPF----NCPDELFTVMACCW  535 (563)
T ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhcc--------ceecCCC----CCcHHHHHHHHHHH
Confidence            44445567889999999999999998 888831      11121111        1222221    23345667788999


Q ss_pred             CCCCCCCCChHHHHHHHHhccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      +..|++||+.+++|.-|.+-..
T Consensus       536 allpeeRPsf~Qlv~cLseF~~  557 (563)
T KOG1024|consen  536 ALLPEERPSFSQLVICLSEFHT  557 (563)
T ss_pred             hcCcccCCCHHHHHHHHHHHHH
Confidence            9999999999999998876543

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=98.16  E-value=1.6e-06  Score=89.91  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCC--CCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGR--HPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk--~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.++|||||||++.|++|++  .|.+....-.......+..+...... .......-..+.+++..|++.+|
T Consensus       201 E~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  280 (295)
T cd05097         201 ESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDI  280 (295)
T ss_pred             hhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCc
Confidence            4444566789999999999999999954  44321000000000000000000000 00000011356788999999999


Q ss_pred             CCCCChHHHHHHHHh
Q 003931          748 DTRPSMRFVAQELSA  762 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~  762 (785)
                      ++||+|.+|++.|++
T Consensus       281 ~~RPs~~~i~~~l~~  295 (295)
T cd05097         281 KDRPTFNKIHHFLRE  295 (295)
T ss_pred             hhCcCHHHHHHHHhC
Confidence            999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.16  E-value=7.6e-07  Score=92.79  Aligned_cols=86  Identities=24%  Similarity=0.385  Sum_probs=55.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc---hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE---LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      |+......+.++|||||||+++|++| |+.|..   ....+..   ..+  +.....+    ..+...+.++...|++.+
T Consensus       209 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~---~~~--~~~~~~~----~~~~~~~~~li~~cl~~~  279 (304)
T cd05101         209 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL---LKE--GHRMDKP----ANCTNELYMMMRDCWHAI  279 (304)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHH---HHc--CCcCCCC----CCCCHHHHHHHHHHcccC
Confidence            44445567889999999999999999 676643   1111100   000  0000000    011233556788999999


Q ss_pred             CCCCCChHHHHHHHHhccc
Q 003931          747 PDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~  765 (785)
                      |++||+|.||++.|+++..
T Consensus       280 p~~Rps~~e~l~~l~~~~~  298 (304)
T cd05101         280 PSHRPTFKQLVEDLDRILT  298 (304)
T ss_pred             hhhCCCHHHHHHHHHHHHH
Confidence            9999999999999988754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.15  E-value=5.5e-06  Score=73.76  Aligned_cols=124  Identities=16%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCC
Q 003931           22 PFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNL  101 (785)
Q Consensus        22 ~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l  101 (785)
                      ..+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+..+ +..+....|..+++++.+.+.. .+. .++...|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            34556666666666653 455566666666666666666553 5555555666666666666654 333 3455556666


Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC
Q 003931          102 GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL  152 (785)
Q Consensus       102 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  152 (785)
                      ++|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666666544 444445556665 666666654 3333444455555554

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=98.15  E-value=1.2e-06  Score=93.81  Aligned_cols=88  Identities=17%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+-.....+.|+|||||||++.|++| |+.|..-...  . ......+....... ....   -..+.++...|.+.+|
T Consensus       283 PE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~--~-~~~~~~~~~~~~~~~~~~~---~~~l~~li~~cl~~dp  356 (374)
T cd05106         283 PESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILV--N-SKFYKMVKRGYQMSRPDFA---PPEIYSIMKMCWNLEP  356 (374)
T ss_pred             HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccc--c-HHHHHHHHcccCccCCCCC---CHHHHHHHHHHcCCCh
Confidence            344445667899999999999999998 9998531100  0 00001111100000 0000   1234566778999999


Q ss_pred             CCCCChHHHHHHHHhc
Q 003931          748 DTRPSMRFVAQELSAK  763 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~  763 (785)
                      ++||+|.+|+++|+++
T Consensus       357 ~~RPs~~~l~~~l~~~  372 (374)
T cd05106         357 TERPTFSQISQLIQRQ  372 (374)
T ss_pred             hhCcCHHHHHHHHHHH
Confidence            9999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=98.15  E-value=5.3e-07  Score=93.18  Aligned_cols=87  Identities=25%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+|||||||+++|++| |..|..-..   .+.....+.+........   .....+.++...|.+.+|+
T Consensus       201 PE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~~p~  274 (288)
T cd05050         201 PESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA---HEEVIYYVRDGNVLSCPD---NCPLELYNLMRLCWSKLPS  274 (288)
T ss_pred             HHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC---HHHHHHHHhcCCCCCCCC---CCCHHHHHHHHHHcccCcc
Confidence            355555678899999999999999998 877742000   000011111111111000   1123456788999999999


Q ss_pred             CCCChHHHHHHHHh
Q 003931          749 TRPSMRFVAQELSA  762 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~  762 (785)
                      +||+|.||++.|++
T Consensus       275 ~Rpt~~el~~~l~~  288 (288)
T cd05050         275 DRPSFASINRILQR  288 (288)
T ss_pred             cCCCHHHHHHHhhC
Confidence            99999999999863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.15  E-value=8.5e-07  Score=92.03  Aligned_cols=88  Identities=24%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh--CCCCCc---hhhhccC-cccccccccC-CCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM--GRHPGE---LITSLSG-ELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt--gk~p~~---~~~~~~~-~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++|||||||++.|++|  |+.|..   ..+.+.. .......... ....+.    .+...+.++...|.
T Consensus       202 e~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li~~cl  277 (296)
T cd05095         202 ESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPA----LCPDSLYKLMLSCW  277 (296)
T ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCC----CCCHHHHHHHHHHc
Confidence            44445667889999999999999999  555532   0111100 0000000000 000000    11234568889999


Q ss_pred             CCCCCCCCChHHHHHHHHh
Q 003931          744 STTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~  762 (785)
                      +.+|++||+|.||++.|++
T Consensus       278 ~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         278 RRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             CCCcccCCCHHHHHHHHhC
Confidence            9999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.15  E-value=9.5e-07  Score=90.80  Aligned_cols=85  Identities=25%  Similarity=0.362  Sum_probs=57.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |.......+.++||||||+++.|++| |+.|.+      +..++......      ..  +.    .....+.++...|.
T Consensus       181 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~------~~--~~----~~~~~~~~li~~~l  248 (279)
T cd05109         181 ESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERL------PQ--PP----ICTIDVYMIMVKCW  248 (279)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcC------CC--Cc----cCCHHHHHHHHHHc
Confidence            44445567899999999999999999 888853      11111110000      00  00    11223557788999


Q ss_pred             CCCCCCCCChHHHHHHHHhccccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      +.+|++||++.|+.+.+.++....
T Consensus       249 ~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         249 MIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             CCChhhCcCHHHHHHHHHHhhcCC
Confidence            999999999999999998876543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.15  E-value=1.6e-06  Score=91.92  Aligned_cols=88  Identities=26%  Similarity=0.386  Sum_probs=59.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.-.++..|.|+|||||||++-|+++ |..|..      ...++...+       .++..+. ....++..   +.-.|
T Consensus       331 PEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~-------~r~~~~~-~~p~~~~~---~~~~c  399 (474)
T KOG0194|consen  331 PETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNG-------YRMPIPS-KTPKELAK---VMKQC  399 (474)
T ss_pred             hhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcC-------ccCCCCC-CCHHHHHH---HHHHh
Confidence            466667788999999999999999999 888854      223331111       1111111 12233333   34489


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccccC
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAYL  768 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~  768 (785)
                      +..+|++||+|.+|++.++.+.....
T Consensus       400 ~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  400 WKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             ccCChhhccCHHHHHHHHHHHHhccc
Confidence            99999999999999999988766543

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.14  E-value=8.6e-07  Score=91.31  Aligned_cols=86  Identities=21%  Similarity=0.342  Sum_probs=54.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||++++|++| |..|..-.   ........+.+........   .+-..+..+...|++.+|+
T Consensus       195 PE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~---~~~~~~~~i~~~~~~~~~~---~~~~~~~~li~~cl~~~p~  268 (283)
T cd05091         195 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY---SNQDVIEMIRNRQVLPCPD---DCPAWVYTLMLECWNEFPS  268 (283)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC---CHHHHHHHHHcCCcCCCCC---CCCHHHHHHHHHHhCCCcc
Confidence            354455667889999999999999999 77674200   0000111111211111000   1112355788999999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||+|.+|++.|+
T Consensus       269 ~RP~~~~i~~~l~  281 (283)
T cd05091         269 RRPRFKDIHSRLR  281 (283)
T ss_pred             cCCCHHHHHHHhh
Confidence            9999999999885

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.14  E-value=8.5e-07  Score=90.76  Aligned_cols=81  Identities=28%  Similarity=0.372  Sum_probs=53.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++||||||++++|++| |+.|..      +...+....        ...... .   ....+.+++..|+
T Consensus       184 e~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~-~---~~~~~~~li~~~l  251 (272)
T cd05075         184 ESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGN--------RLKQPP-D---CLDGLYSLMSSCW  251 (272)
T ss_pred             HHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-C---CCHHHHHHHHHHc
Confidence            44444567889999999999999999 677743      111111100        000000 1   1123457788999


Q ss_pred             CCCCCCCCChHHHHHHHHhc
Q 003931          744 STTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      +.+|++||+|.|+.+.|+++
T Consensus       252 ~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         252 LLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             CCCcccCcCHHHHHHHHHhh
Confidence            99999999999999998764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.13  E-value=1.4e-06  Score=88.35  Aligned_cols=82  Identities=23%  Similarity=0.374  Sum_probs=55.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+.....++.++||||||+++.|++| |+.|..      +..++... ..     +....      .+-..+.++...|
T Consensus       168 PE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~-~~-----~~~~~------~~~~~~~~li~~~  235 (256)
T cd05082         168 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG-YK-----MDAPD------GCPPVVYDVMKQC  235 (256)
T ss_pred             HHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcC-CC-----CCCCC------CCCHHHHHHHHHH
Confidence            355555667889999999999999998 888743      11111110 00     01100      0112345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      .+.+|++||+|.+++++|+++
T Consensus       236 l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         236 WHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             hcCChhhCcCHHHHHHHHhcC
Confidence            999999999999999998764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.13  E-value=1e-06  Score=90.17  Aligned_cols=78  Identities=27%  Similarity=0.431  Sum_probs=53.3

Q ss_pred             hhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      .....+.++||||||+++.|++| |+.|..      +..+.....        .+....    .....+.+++..|.+.+
T Consensus       188 ~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~l~~~~l~~~  255 (273)
T cd05074         188 ADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGN--------RLKQPP----DCLEDVYELMCQCWSPE  255 (273)
T ss_pred             hcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCC--------cCCCCC----CCCHHHHHHHHHHcCCC
Confidence            34456789999999999999999 777742      111111100        010000    11234667889999999


Q ss_pred             CCCCCChHHHHHHHHhc
Q 003931          747 PDTRPSMRFVAQELSAK  763 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~  763 (785)
                      |++||++.+|.+.|+++
T Consensus       256 p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         256 PKCRPSFQHLRDQLELI  272 (273)
T ss_pred             hhhCcCHHHHHHHHHhh
Confidence            99999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=98.13  E-value=9.8e-07  Score=89.66  Aligned_cols=88  Identities=24%  Similarity=0.379  Sum_probs=55.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++|||||||++.|++| |+.|..-..   ...... .+......+..  ..+...+.+++..|...+|+
T Consensus       173 PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~---~~~~~~-~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~p~  246 (261)
T cd05148         173 PEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN---NHEVYD-QITAGYRMPCP--AKCPQEIYKIMLECWAAEPE  246 (261)
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC---HHHHHH-HHHhCCcCCCC--CCCCHHHHHHHHHHcCCCch
Confidence            344445567889999999999999999 788853100   000000 00011000000  01112355778899999999


Q ss_pred             CCCChHHHHHHHHhc
Q 003931          749 TRPSMRFVAQELSAK  763 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~  763 (785)
                      +||+|+++.++|+.+
T Consensus       247 ~Rpt~~~l~~~L~~~  261 (261)
T cd05148         247 DRPSFKALREELDNI  261 (261)
T ss_pred             hCcCHHHHHHHHhcC
Confidence            999999999999753

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.13  E-value=1.2e-06  Score=88.69  Aligned_cols=83  Identities=20%  Similarity=0.305  Sum_probs=52.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|.+-....   .....+..........   ..-..+.++...|++.+|++
T Consensus       170 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~~~p~~  243 (256)
T cd08529         170 PELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQG---ALILKIIRGVFPPVSQ---MYSQQLAQLIDQCLTKDYRQ  243 (256)
T ss_pred             HHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHcCCCCCCcc---ccCHHHHHHHHHHccCCccc
Confidence            45555666788999999999999999999996411100   0000000000000000   11123567788999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|.++++
T Consensus       244 Rp~~~~ll~  252 (256)
T cd08529         244 RPDTFQLLR  252 (256)
T ss_pred             CcCHHHHhh
Confidence            999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.12  E-value=9.1e-07  Score=89.66  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=52.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |.......+.++|||||||++.|++| |+.|.+      +...+....    .  +.....  ..    ..+.++...|.
T Consensus       168 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~----~--~~~~~~--~~----~~l~~li~~~~  235 (257)
T cd05116         168 ECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGE----R--MECPQR--CP----PEMYDLMKLCW  235 (257)
T ss_pred             hHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCC----C--CCCCCC--CC----HHHHHHHHHHh
Confidence            33334456789999999999999998 998854      111111100    0  011110  11    12346778899


Q ss_pred             CCCCCCCCChHHHHHHHHh
Q 003931          744 STTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~  762 (785)
                      +.+|++||+|.+|+++|+.
T Consensus       236 ~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         236 TYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             ccCchhCcCHHHHHHHHhc
Confidence            9999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=98.11  E-value=1.1e-06  Score=90.25  Aligned_cols=79  Identities=25%  Similarity=0.428  Sum_probs=53.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+-.....+.++|||||||++.|++| |+.|..      .+.....         ........   ..-..+.++...|+
T Consensus       194 E~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~li~~~l  261 (280)
T cd05049         194 ESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQ---------GRLLQRPR---TCPSEVYDIMLGCW  261 (280)
T ss_pred             hhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---------CCcCCCCC---CCCHHHHHHHHHHc
Confidence            44445667889999999999999999 999852      1111110         01100000   01123567788999


Q ss_pred             CCCCCCCCChHHHHHHHH
Q 003931          744 STTPDTRPSMRFVAQELS  761 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~  761 (785)
                      +.+|++||++.||.++|+
T Consensus       262 ~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         262 KRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             CCCcccCCCHHHHHHHhh
Confidence            999999999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.11  E-value=1.1e-06  Score=91.76  Aligned_cols=90  Identities=20%  Similarity=0.258  Sum_probs=55.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++|||||||++.|++| |+.|.+-...    ....+.+.......  ........+.++...|...+|++
T Consensus       212 E~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~  285 (307)
T cd05098         212 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV----EELFKLLKEGHRMD--KPSNCTNELYMMMRDCWHAVPSQ  285 (307)
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCH----HHHHHHHHcCCCCC--CCCcCCHHHHHHHHHHcccChhh
Confidence            44444557889999999999999999 7777431000    00000000000000  00011123456788999999999


Q ss_pred             CCChHHHHHHHHhcccc
Q 003931          750 RPSMRFVAQELSAKTQA  766 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~~  766 (785)
                      ||+|.||++.|+++.+.
T Consensus       286 Rps~~evl~~l~~~~~~  302 (307)
T cd05098         286 RPTFKQLVEDLDRILAL  302 (307)
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999987554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.11  E-value=1.2e-06  Score=88.89  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+-....++.++|||||||++.|+++ |+.|..      +...+.....      +....   .   +-.++.++...|.
T Consensus       168 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~------~~~~~---~---~~~~l~~li~~c~  235 (257)
T cd05115         168 ECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKR------LDCPA---E---CPPEMYALMKDCW  235 (257)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCC------CCCCC---C---CCHHHHHHHHHHc
Confidence            44444567889999999999999997 999853      1111111100      00100   1   1123456788999


Q ss_pred             CCCCCCCCChHHHHHHHHhc
Q 003931          744 STTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ..+|++||+|.+|.+.|+.+
T Consensus       236 ~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         236 IYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCChhhCcCHHHHHHHHhhh
Confidence            99999999999999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=98.11  E-value=7.3e-07  Score=92.92  Aligned_cols=85  Identities=25%  Similarity=0.273  Sum_probs=52.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCC--CCCc------hhhhccC--cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGR--HPGE------LITSLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL  740 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk--~p~~------~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial  740 (785)
                      |+......+.|+||||||+++.|++|+.  .|..      ...++..  ......+.   ...+.    .+-..+.++..
T Consensus       210 E~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~li~  282 (304)
T cd05096         210 ECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVY---LFRPP----PCPQGLYELML  282 (304)
T ss_pred             HHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhcccccc---ccCCC----CCCHHHHHHHH
Confidence            5444566789999999999999999854  4432      1111100  00000000   00000    11124567889


Q ss_pred             hcCCCCCCCCCChHHHHHHHHh
Q 003931          741 ACTSTTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       741 ~C~~~~p~~Rp~m~~vv~~l~~  762 (785)
                      .|.+.+|++||+|.+|++.|++
T Consensus       283 ~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         283 QCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             HHccCCchhCcCHHHHHHHHhC
Confidence            9999999999999999998853

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=98.11  E-value=1.2e-06  Score=88.60  Aligned_cols=85  Identities=20%  Similarity=0.303  Sum_probs=53.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.|++| |+.|.+....   ......+.+.........   .-..+.++...|.+.+|+
T Consensus       170 pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~p~  243 (256)
T cd05113         170 PEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN---SETVEKVSQGLRLYRPHL---ASEKVYAIMYSCWHEKAE  243 (256)
T ss_pred             HHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH---HHHHHHHhcCCCCCCCCC---CCHHHHHHHHHHcCCCcc
Confidence            355555667889999999999999999 9988531110   000000000000000000   113456778899999999


Q ss_pred             CCCChHHHHHHH
Q 003931          749 TRPSMRFVAQEL  760 (785)
Q Consensus       749 ~Rp~m~~vv~~l  760 (785)
                      +||++.++++.+
T Consensus       244 ~Rp~~~~ll~~~  255 (256)
T cd05113         244 ERPTFQQLLSSI  255 (256)
T ss_pred             cCCCHHHHHHhh
Confidence            999999998876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.11  E-value=5.1e-06  Score=73.96  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=46.3

Q ss_pred             ccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCC
Q 003931           46 WSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKL  125 (785)
Q Consensus        46 ~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l  125 (785)
                      ..+|.++.+|+.+.+.. .+..+....|.++++|+.+.+..+ +. .++...|.+++.++.+.+.. .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence            34555555555555543 344444555555555555555553 33 34455555555555555543 3333344455555


Q ss_pred             CCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCC
Q 003931          126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL  176 (785)
Q Consensus       126 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  176 (785)
                      ++|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555555443 333333445554 555555543 2222333444444443

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.10  E-value=9.4e-07  Score=90.54  Aligned_cols=84  Identities=18%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||+++|++||+.|.+-..-.........-..+.+...  .   .-..+.++...|...+|++
T Consensus       167 PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l~~~l~~~p~~  241 (274)
T cd06609         167 PEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGN--K---FSKPFKDFVSLCLNKDPKE  241 (274)
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCccc--c---cCHHHHHHHHHHhhCChhh
Confidence            4555566688999999999999999999999641110000000000011111110  0   0112445677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|++|++
T Consensus       242 Rpt~~~il~  250 (274)
T cd06609         242 RPSAKELLK  250 (274)
T ss_pred             CcCHHHHhh
Confidence            999999966

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.10  E-value=1.7e-06  Score=87.78  Aligned_cols=87  Identities=24%  Similarity=0.399  Sum_probs=55.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+....+.+.++|||||||++.|++| |+.|..-..    .....+.++.....+..  ...-..+.++...|...+|+
T Consensus       172 PE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~  245 (260)
T cd05070         172 PEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN----NREVLEQVERGYRMPCP--QDCPISLHELMLQCWKKDPE  245 (260)
T ss_pred             hHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCCCCCCC--CcCCHHHHHHHHHHcccCcc
Confidence            355555678899999999999999999 787752100    00000111111000000  01123466788999999999


Q ss_pred             CCCChHHHHHHHHh
Q 003931          749 TRPSMRFVAQELSA  762 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~  762 (785)
                      +||+|.++.+.|++
T Consensus       246 ~Rpt~~~l~~~l~~  259 (260)
T cd05070         246 ERPTFEYLQSFLED  259 (260)
T ss_pred             cCcCHHHHHHHHhc
Confidence            99999999998865

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=98.10  E-value=1.3e-06  Score=94.10  Aligned_cols=87  Identities=20%  Similarity=0.353  Sum_probs=55.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.|+|||||||++.|++| |+.|..-..  ... ...+.+..  ....+    ...-..+.+++..|.+.+|
T Consensus       309 E~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~--~~~-~~~~~~~~~~~~~~~----~~~~~~l~~li~~cl~~dP  381 (400)
T cd05105         309 ESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI--VDS-TFYNKIKSGYRMAKP----DHATQEVYDIMVKCWNSEP  381 (400)
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc--hhH-HHHHHHhcCCCCCCC----ccCCHHHHHHHHHHCccCH
Confidence            44445567889999999999999997 888853100  000 00000000  01000    0112345678899999999


Q ss_pred             CCCCChHHHHHHHHhcc
Q 003931          748 DTRPSMRFVAQELSAKT  764 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~  764 (785)
                      ++||+|.+|+++|+++-
T Consensus       382 ~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         382 EKRPSFLHLSDIVESLL  398 (400)
T ss_pred             hHCcCHHHHHHHHHHHc
Confidence            99999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.09  E-value=1.1e-06  Score=89.65  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++|||||||++.|++||+.|..-...... ........++.+..       .+...++-.+.|...+|++
T Consensus       179 E~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~p~~  251 (266)
T cd06651         179 EVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPS-------HISEHARDFLGCIFVEARH  251 (266)
T ss_pred             HHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCch-------hcCHHHHHHHHHhcCChhh
Confidence            444455678899999999999999999999531100000 00000111222211       1111223334688889999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|+||++
T Consensus       252 Rp~~~eil~  260 (266)
T cd06651         252 RPSAEELLR  260 (266)
T ss_pred             CcCHHHHhc
Confidence            999999853

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.09  E-value=1.5e-06  Score=89.38  Aligned_cols=86  Identities=19%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||+++|++| |+.|..-..   .......+...........   .-..+.++...|++.+|+
T Consensus       193 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~P~  266 (280)
T cd05092         193 PESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS---NTEAIECITQGRELERPRT---CPPEVYAIMQGCWQREPQ  266 (280)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC---HHHHHHHHHcCccCCCCCC---CCHHHHHHHHHHccCChh
Confidence            344455667899999999999999999 888742000   0000000111000000000   112245677899999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||++.||.+.|+
T Consensus       267 ~Rp~~~~l~~~l~  279 (280)
T cd05092         267 QRMVIKDIHSRLQ  279 (280)
T ss_pred             hCCCHHHHHHHHh
Confidence            9999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=98.09  E-value=1.4e-06  Score=88.92  Aligned_cols=87  Identities=25%  Similarity=0.418  Sum_probs=55.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.++||||||+++.|+++ |+.|..-...   ......+.+. ......    .....+.+++..|.+.+|
T Consensus       178 pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~li~~~l~~~p  250 (267)
T cd05066         178 PEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN---QDVIKAIEEGYRLPAPM----DCPAALHQLMLDCWQKDR  250 (267)
T ss_pred             HhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH---HHHHHHHhCCCcCCCCC----CCCHHHHHHHHHHcccCc
Confidence            355555677889999999999999887 9998531000   0000000110 010000    111234577889999999


Q ss_pred             CCCCChHHHHHHHHhc
Q 003931          748 DTRPSMRFVAQELSAK  763 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~  763 (785)
                      ++||+|.+|++.|+++
T Consensus       251 ~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         251 NERPKFEQIVSILDKL  266 (267)
T ss_pred             hhCCCHHHHHHHHHhh
Confidence            9999999999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.09  E-value=1.3e-06  Score=88.28  Aligned_cols=85  Identities=25%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++|||||||++.|+++ |+.|.+-...    ....+.++.......  ....-..+.++...|.+.+|++
T Consensus       166 E~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~~  239 (252)
T cd05084         166 EALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN----QQTREAIEQGVRLPC--PELCPDAVYRLMERCWEYDPGQ  239 (252)
T ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH----HHHHHHHHcCCCCCC--cccCCHHHHHHHHHHcCCChhh
Confidence            44445567889999999999999998 7777531110    000111111110000  0011124567788999999999


Q ss_pred             CCChHHHHHHHH
Q 003931          750 RPSMRFVAQELS  761 (785)
Q Consensus       750 Rp~m~~vv~~l~  761 (785)
                      ||+|.+|.++|+
T Consensus       240 Rps~~~~~~~l~  251 (252)
T cd05084         240 RPSFSTVHQELQ  251 (252)
T ss_pred             CcCHHHHHHHHh
Confidence            999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.09  E-value=1.2e-06  Score=90.36  Aligned_cols=91  Identities=18%  Similarity=0.249  Sum_probs=55.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchh-----hhcc---Ccccc---cccccCCCCCCCchhHHHHHHHHHHH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI-----TSLS---GELFL---KDVLDQRLPPPTGQLAEAVVLTINVA  739 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~-----~~~~---~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~ia  739 (785)
                      |+......+.++|||||||+++|++||+.|....     +.+.   .+...   .+.+......+  ........+.+++
T Consensus       182 E~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li  259 (284)
T cd05079         182 ECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLP--RPPNCPEEVYQLM  259 (284)
T ss_pred             HHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCC--CCCCCCHHHHHHH
Confidence            4444456788999999999999999988764210     0000   00000   00000000000  0001223567889


Q ss_pred             hhcCCCCCCCCCChHHHHHHHHhc
Q 003931          740 LACTSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       740 l~C~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ..|.+.+|++||++.||++.++++
T Consensus       260 ~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         260 RKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHccCCcccCcCHHHHHHHHHhh
Confidence            999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.09  E-value=1.8e-06  Score=88.61  Aligned_cols=84  Identities=20%  Similarity=0.332  Sum_probs=53.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|.......    ...+.+.......  ........+.++...|++.+|++
T Consensus       170 pE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~  243 (277)
T cd06640         170 PEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM----RVLFLIPKNNPPT--LTGEFSKPFKEFIDACLNKDPSF  243 (277)
T ss_pred             HhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH----hHhhhhhcCCCCC--CchhhhHHHHHHHHHHcccCccc
Confidence            45555566789999999999999999999985311100    0001111110000  11122344667888999999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||+|.||++.
T Consensus       244 Rp~~~~il~~  253 (277)
T cd06640         244 RPTAKELLKH  253 (277)
T ss_pred             CcCHHHHHhC
Confidence            9999999653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.08  E-value=1.7e-06  Score=87.83  Aligned_cols=81  Identities=26%  Similarity=0.408  Sum_probs=53.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++| |+.|..      ...+....      ..+....      .....+.++.-.|
T Consensus       172 Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~li~~~  239 (260)
T cd05069         172 PEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERG------YRMPCPQ------GCPESLHELMKLC  239 (260)
T ss_pred             HHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC------CCCCCCc------ccCHHHHHHHHHH
Confidence            355555678899999999999999999 887742      11111100      0000000      1112345667789


Q ss_pred             CCCCCCCCCChHHHHHHHHh
Q 003931          743 TSTTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~  762 (785)
                      .+.+|++||+|.+|.+.|++
T Consensus       240 l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         240 WKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ccCCcccCcCHHHHHHHHhc
Confidence            99999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.07  E-value=1.8e-06  Score=88.77  Aligned_cols=89  Identities=24%  Similarity=0.300  Sum_probs=56.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++|||||||++.|++| |+.|.+-...   +.....+......... .  .+-..+..+...|...+|.+
T Consensus       181 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~p~~  254 (279)
T cd05057         181 ESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA---VEIPDLLEKGERLPQP-P--ICTIDVYMVLVKCWMIDAES  254 (279)
T ss_pred             HHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH---HHHHHHHhCCCCCCCC-C--CCCHHHHHHHHHHcCCChhh
Confidence            44445567889999999999999999 9999641100   0000000000000000 0  01133557788999999999


Q ss_pred             CCChHHHHHHHHhccc
Q 003931          750 RPSMRFVAQELSAKTQ  765 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~  765 (785)
                      ||++.++++.|.++..
T Consensus       255 Rp~~~~l~~~l~~~~~  270 (279)
T cd05057         255 RPTFKELINEFSKMAR  270 (279)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.05  E-value=1.7e-06  Score=88.73  Aligned_cols=86  Identities=26%  Similarity=0.288  Sum_probs=54.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++|||||||++.|++| |+.|..-..   .......+.+.........   +-..+.+++..|...+|+
T Consensus       190 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~  263 (277)
T cd05032         190 PESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS---NEEVLKFVIDGGHLDLPEN---CPDKLLELMRMCWQYNPK  263 (277)
T ss_pred             HHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC---HHHHHHHHhcCCCCCCCCC---CCHHHHHHHHHHcCCChh
Confidence            344455678899999999999999999 887742100   0000000111111000001   123456788999999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||++.++.++|+
T Consensus       264 ~Rpt~~~l~~~l~  276 (277)
T cd05032         264 MRPTFLEIVSSLK  276 (277)
T ss_pred             hCCCHHHHHHHhc
Confidence            9999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.05  E-value=2.2e-06  Score=89.71  Aligned_cols=84  Identities=21%  Similarity=0.306  Sum_probs=56.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+-.....+.++|||||||++.|++| |+.|..-      ....... ..     +..  + ..   +...+.+++..|.
T Consensus       206 E~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-~~-----~~~--~-~~---~~~~l~~li~~cl  273 (314)
T cd05099         206 EALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREG-HR-----MDK--P-SN---CTHELYMLMRECW  273 (314)
T ss_pred             HHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CC-----CCC--C-CC---CCHHHHHHHHHHc
Confidence            44445567899999999999999999 8877431      1111100 00     001  0 01   1123446788999


Q ss_pred             CCCCCCCCChHHHHHHHHhcccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ..+|++||+|.||.+.|.++...
T Consensus       274 ~~~p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         274 HAVPTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             CCCcccCcCHHHHHHHHHHHHHH
Confidence            99999999999999999988654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=98.04  E-value=1.4e-06  Score=89.83  Aligned_cols=85  Identities=20%  Similarity=0.333  Sum_probs=53.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+-.....+.++|||||||++.|++| |+.|..-..    .....+.++.... .....   .-..+.++...|++.+|+
T Consensus       196 E~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~p~  268 (283)
T cd05090         196 EAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS----NQEVIEMVRKRQLLPCSED---CPPRMYSLMTECWQEGPS  268 (283)
T ss_pred             HHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC----HHHHHHHHHcCCcCCCCCC---CCHHHHHHHHHHcccCcc
Confidence            44445567899999999999999999 887742100    0011111111110 00001   112344567789999999


Q ss_pred             CCCChHHHHHHHHh
Q 003931          749 TRPSMRFVAQELSA  762 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~  762 (785)
                      +||+|.+|.++|..
T Consensus       269 ~Rp~~~~i~~~l~~  282 (283)
T cd05090         269 RRPRFKDIHTRLRS  282 (283)
T ss_pred             cCcCHHHHHHHhhc
Confidence            99999999988853

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.04  E-value=1.9e-06  Score=87.62  Aligned_cols=87  Identities=25%  Similarity=0.362  Sum_probs=55.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+.....++.++||||||+++.|++| |+.|.+-..   .. ...+.++......  ...+....+.++...|++.+|+
T Consensus       172 PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~---~~-~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~  245 (262)
T cd05071         172 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV---NR-EVLDQVERGYRMP--CPPECPESLHDLMCQCWRKEPE  245 (262)
T ss_pred             HhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC---hH-HHHHHHhcCCCCC--CccccCHHHHHHHHHHccCCcc
Confidence            355555678899999999999999999 666642000   00 0000000000000  0011223456889999999999


Q ss_pred             CCCChHHHHHHHHh
Q 003931          749 TRPSMRFVAQELSA  762 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~  762 (785)
                      +||+|.++.+.|++
T Consensus       246 ~Rp~~~~~~~~l~~  259 (262)
T cd05071         246 ERPTFEYLQAFLED  259 (262)
T ss_pred             cCCCHHHHHHHHHH
Confidence            99999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=98.04  E-value=1e-06  Score=90.40  Aligned_cols=86  Identities=24%  Similarity=0.310  Sum_probs=53.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++|||||||++.|++| |+.|..-.   ..+.....+.+........   .+...+.+++..|.+.+|++
T Consensus       191 E~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~  264 (277)
T cd05062         191 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM---SNEQVLRFVMEGGLLDKPD---NCPDMLFELMRMCWQYNPKM  264 (277)
T ss_pred             hHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC---CHHHHHHHHHcCCcCCCCC---CCCHHHHHHHHHHcCCChhh
Confidence            44445567889999999999999999 67774210   0000000011111100000   11224567888999999999


Q ss_pred             CCChHHHHHHHHh
Q 003931          750 RPSMRFVAQELSA  762 (785)
Q Consensus       750 Rp~m~~vv~~l~~  762 (785)
                      ||+|.||+++|++
T Consensus       265 Rps~~e~l~~l~~  277 (277)
T cd05062         265 RPSFLEIISSIKE  277 (277)
T ss_pred             CcCHHHHHHHhhC
Confidence            9999999998753

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.03  E-value=1.3e-06  Score=89.49  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=47.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||+++|++||+.|.+-..............++.+...  .   ....+.++...|...+|.+||++.||
T Consensus       192 ~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~li~~~l~~~p~~Rpt~~~i  266 (272)
T cd06637         192 TYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSK--K---WSKKFQSFIESCLVKNHSQRPTTEQL  266 (272)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCC--C---cCHHHHHHHHHHcCCChhhCCCHHHH
Confidence            467799999999999999999999641111100000000011111110  1   11234566789999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       267 l~  268 (272)
T cd06637         267 MK  268 (272)
T ss_pred             hh
Confidence            64

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=98.03  E-value=1.8e-06  Score=87.35  Aligned_cols=82  Identities=22%  Similarity=0.401  Sum_probs=54.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+..+...+.++||||||+++.|+++ |+.|..      +...+... .     .+....      .....+.++...|
T Consensus       168 pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~-~-----~~~~~~------~~~~~~~~li~~~  235 (256)
T cd05039         168 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKG-Y-----RMEAPE------GCPPEVYKVMKDC  235 (256)
T ss_pred             chhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcC-C-----CCCCcc------CCCHHHHHHHHHH
Confidence            344455667889999999999999997 888853      11111100 0     000000      0112345677889


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      +..+|++||++.||.++|+.+
T Consensus       236 l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         236 WELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             hccChhhCcCHHHHHHHHhcC
Confidence            999999999999999999754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.01  E-value=1.6e-06  Score=90.26  Aligned_cols=87  Identities=17%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++|||||||++.|++| |+.|..-..   ......+.++..........  .-..+.++...|.+.+|++
T Consensus       213 E~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~cl~~~p~~  287 (302)
T cd05055         213 ESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP---VDSKFYKLIKEGYRMAQPEH--APAEIYDIMKTCWDADPLK  287 (302)
T ss_pred             hhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC---chHHHHHHHHcCCcCCCCCC--CCHHHHHHHHHHcCCCchh
Confidence            44445567889999999999999999 888842100   00000011111110000000  0123567788999999999


Q ss_pred             CCChHHHHHHHHh
Q 003931          750 RPSMRFVAQELSA  762 (785)
Q Consensus       750 Rp~m~~vv~~l~~  762 (785)
                      ||+|.||++.|++
T Consensus       288 Rpt~~ell~~l~~  300 (302)
T cd05055         288 RPTFKQIVQLIGK  300 (302)
T ss_pred             CcCHHHHHHHHHh
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=98.01  E-value=1.1e-06  Score=95.00  Aligned_cols=85  Identities=26%  Similarity=0.388  Sum_probs=62.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCc-ccccccc-cCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGE-LFLKDVL-DQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~-~~~~~~~-d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |.-.-.+.|..+||||||||+-|+++ |.||.    |=... +-+.+|- +-+|..    ..+|-..+.++++.|++.+-
T Consensus       804 EAIa~RKFTsASDVWSyGIVmWEVmSyGERPY----WdmSNQdVIkaIe~gyRLPp----PmDCP~aL~qLMldCWqkdR  875 (996)
T KOG0196|consen  804 EAIAYRKFTSASDVWSYGIVMWEVMSYGERPY----WDMSNQDVIKAIEQGYRLPP----PMDCPAALYQLMLDCWQKDR  875 (996)
T ss_pred             hHhhhcccCchhhccccceEEEEecccCCCcc----cccchHHHHHHHHhccCCCC----CCCCcHHHHHHHHHHHHHHh
Confidence            44455789999999999999999987 99994    21111 1111121 234432    34577888999999999999


Q ss_pred             CCCCChHHHHHHHHhc
Q 003931          748 DTRPSMRFVAQELSAK  763 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~  763 (785)
                      .+||...++|..|+++
T Consensus       876 ~~RP~F~qiV~~lDkl  891 (996)
T KOG0196|consen  876 NRRPKFAQIVSTLDKL  891 (996)
T ss_pred             hcCCCHHHHHHHHHHH
Confidence            9999999999999864

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.01  E-value=2.2e-06  Score=88.51  Aligned_cols=88  Identities=19%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhh--ccC---cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITS--LSG---ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~--~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      |+......+.++||||+||++.|++||+.|.+....  ...   .......-.+.+.............+.++...|++.
T Consensus       173 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  252 (287)
T cd06621         173 ERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEK  252 (287)
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCC
Confidence            444445668899999999999999999999652211  000   000000000111100000000112356788999999


Q ss_pred             CCCCCCChHHHHH
Q 003931          746 TPDTRPSMRFVAQ  758 (785)
Q Consensus       746 ~p~~Rp~m~~vv~  758 (785)
                      +|++||+|.||++
T Consensus       253 ~p~~Rpt~~eil~  265 (287)
T cd06621         253 DPTRRPTPWDMLE  265 (287)
T ss_pred             CcccCCCHHHHHh
Confidence            9999999999976

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.01  E-value=3.3e-06  Score=86.32  Aligned_cols=83  Identities=27%  Similarity=0.378  Sum_probs=55.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchh------hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELI------TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++|||||||+++|++| |+.|....      .+.......      ....   .   +-..+.++...|+
T Consensus       178 E~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~------~~~~---~---~~~~~~~li~~~l  245 (270)
T cd05056         178 ESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERL------PMPP---N---CPPTLYSLMTKCW  245 (270)
T ss_pred             hhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcC------CCCC---C---CCHHHHHHHHHHc
Confidence            33334456789999999999999996 99985311      111111000      0101   1   1123455677899


Q ss_pred             CCCCCCCCChHHHHHHHHhccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ..+|++||++.++++.|+++..
T Consensus       246 ~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         246 AYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             CCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999988765

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=98.01  E-value=3.3e-06  Score=85.77  Aligned_cols=84  Identities=26%  Similarity=0.411  Sum_probs=53.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+-.....+.++|||||||++.|++| |+.|..-...    ....+.++.  ...... .   .-..+.+++..|...+|
T Consensus       173 e~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~-~---~~~~~~~li~~~l~~~p  244 (260)
T cd05067         173 EAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN----PEVIQNLERGYRMPRPD-N---CPEELYELMRLCWKEKP  244 (260)
T ss_pred             HHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHccCCh
Confidence            44444567889999999999999999 8988531000    000000000  000000 1   11235677889999999


Q ss_pred             CCCCChHHHHHHHHh
Q 003931          748 DTRPSMRFVAQELSA  762 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~  762 (785)
                      ++||++.++...|+.
T Consensus       245 ~~Rp~~~~l~~~l~~  259 (260)
T cd05067         245 EERPTFEYLRSVLED  259 (260)
T ss_pred             hhCCCHHHHHHHhhc
Confidence            999999999998864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.00  E-value=3.2e-06  Score=86.20  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ..+.++|||||||+++|++||+.|.+-...... ...... -.+.+.... ........+.++...|.+.+|++||++.+
T Consensus       183 ~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  260 (267)
T cd06610         183 GYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQN-DPPSLETGA-DYKKYSKSFRKMISLCLQKDPSKRPTAEE  260 (267)
T ss_pred             CcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcC-CCCCcCCcc-ccccccHHHHHHHHHHcCCChhhCcCHHH
Confidence            578899999999999999999999641111100 000000 011111100 00011123456677899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      +++
T Consensus       261 ll~  263 (267)
T cd06610         261 LLK  263 (267)
T ss_pred             Hhh
Confidence            864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=97.99  E-value=4.4e-06  Score=84.84  Aligned_cols=81  Identities=28%  Similarity=0.514  Sum_probs=53.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++| |+.|..      ...+....        ..+.... .   .-..+.++...|
T Consensus       172 PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~--------~~~~~~~-~---~~~~~~~~i~~~  239 (260)
T cd05073         172 PEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG--------YRMPRPE-N---CPEELYNIMMRC  239 (260)
T ss_pred             HhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCC--------CCCCCcc-c---CCHHHHHHHHHH
Confidence            355455667889999999999999999 887743      11111110        0000000 0   112355677899


Q ss_pred             CCCCCCCCCChHHHHHHHHh
Q 003931          743 TSTTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~  762 (785)
                      .+.+|++||++.+|.++|+.
T Consensus       240 l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         240 WKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             cccCcccCcCHHHHHHHHhc
Confidence            99999999999999999874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=97.98  E-value=2.9e-06  Score=85.81  Aligned_cols=86  Identities=23%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+......+.++|||||||++.|+++ |+.|..-...-    ...+.+..........  .....+.+++..|.+.+|++
T Consensus       167 e~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p~~  240 (254)
T cd05083         167 EALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLK----EVKECVEKGYRMEPPE--GCPADVYVLMTSCWETEPKK  240 (254)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHH----HHHHHHhCCCCCCCCC--cCCHHHHHHHHHHcCCChhh
Confidence            44445567889999999999999998 88874310000    0000000000000000  01123457788999999999


Q ss_pred             CCChHHHHHHHHh
Q 003931          750 RPSMRFVAQELSA  762 (785)
Q Consensus       750 Rp~m~~vv~~l~~  762 (785)
                      ||+|.+|+..|++
T Consensus       241 Rp~~~~l~~~l~~  253 (254)
T cd05083         241 RPSFHKLREKLEK  253 (254)
T ss_pred             CcCHHHHHHHHcc
Confidence            9999999998753

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=97.97  E-value=2.3e-06  Score=88.60  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=47.8

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.|+|||||||++.|++||+.|.........-.......-+.+...    .+....+.++...|.+.+|++||+|.|+
T Consensus       209 ~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~~p~~Rps~~~i  284 (291)
T cd06639         209 SYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHP----EKWCRSFNHFISQCLIKDFEARPSVTHL  284 (291)
T ss_pred             ccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcc----cccCHHHHHHHHHHhhcChhhCcCHHHH
Confidence            357899999999999999999999642111100000000000111100    0111235677889999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      .+
T Consensus       285 l~  286 (291)
T cd06639         285 LE  286 (291)
T ss_pred             hc
Confidence            64

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=97.97  E-value=4.2e-06  Score=85.42  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=46.1

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCccccc--ccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLK--DVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      .+.++|||||||+++|++||+.|..............  .-..+.+..   ...   ..+..+...|++.+|++||+|.|
T Consensus       188 ~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~li~~~l~~~p~~Rpt~~~  261 (268)
T cd06624         188 YGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPE---SLS---AEAKNFILRCFEPDPDKRASAHD  261 (268)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCc---ccC---HHHHHHHHHHcCCCchhCCCHHH
Confidence            5689999999999999999999953111100000000  000111111   111   12446678999999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      |++
T Consensus       262 ll~  264 (268)
T cd06624         262 LLQ  264 (268)
T ss_pred             HHh
Confidence            864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=97.96  E-value=3.3e-06  Score=85.92  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||++.|++||+.|.+-...   ......+-+........   .....+.++...|++.+|++|
T Consensus       180 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~p~~R  253 (265)
T cd08217         180 EQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQ---LQLASKIKEGKFRRIPY---RYSSELNEVIKSMLNVDPDKR  253 (265)
T ss_pred             hhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCH---HHHHHHHhcCCCCCCcc---ccCHHHHHHHHHHccCCcccC
Confidence            444445578899999999999999999999642110   00000011111100000   111234577789999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |+|.+|++
T Consensus       254 p~~~~il~  261 (265)
T cd08217         254 PSTEELLQ  261 (265)
T ss_pred             CCHHHHhh
Confidence            99999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=97.96  E-value=3.5e-06  Score=89.04  Aligned_cols=86  Identities=19%  Similarity=0.279  Sum_probs=55.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc---hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE---LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      |.......+.++|||||||+++|+++ |+.|..   ...+..      .+.+........   .....+.+++..|.+.+
T Consensus       206 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~l~~li~~cl~~~  276 (334)
T cd05100         206 EALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFK------LLKEGHRMDKPA---NCTHELYMIMRECWHAV  276 (334)
T ss_pred             HHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHH------HHHcCCCCCCCC---CCCHHHHHHHHHHcccC
Confidence            33334556789999999999999999 777742   111110      000100000000   11124557788999999


Q ss_pred             CCCCCChHHHHHHHHhccc
Q 003931          747 PDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~  765 (785)
                      |++||+|.|+++.|.++..
T Consensus       277 p~~Rps~~ell~~l~~~~~  295 (334)
T cd05100         277 PSQRPTFKQLVEDLDRVLT  295 (334)
T ss_pred             hhhCcCHHHHHHHHHHHhh
Confidence            9999999999999998864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=97.96  E-value=2.8e-06  Score=87.73  Aligned_cols=88  Identities=23%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.|+++ |+.|..-...   +.....+.+........   .+-..+.+++..|.+.+|+
T Consensus       190 pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~  263 (288)
T cd05061         190 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN---EQVLKFVMDGGYLDQPD---NCPERVTDLMRMCWQFNPK  263 (288)
T ss_pred             HHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHHHcCCCCCCCC---CCCHHHHHHHHHHcCCChh
Confidence            355455667899999999999999999 6767421000   00011111111110000   1113456778899999999


Q ss_pred             CCCChHHHHHHHHhc
Q 003931          749 TRPSMRFVAQELSAK  763 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~  763 (785)
                      +||+|.|+++.+++.
T Consensus       264 ~Rps~~~ll~~l~~~  278 (288)
T cd05061         264 MRPTFLEIVNLLKDD  278 (288)
T ss_pred             HCcCHHHHHHHHHhh
Confidence            999999999998763

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=97.95  E-value=2.5e-06  Score=86.05  Aligned_cols=86  Identities=22%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.|++| |+.|...  +..  ....+.++.......  ....-..+.++...|...+|+
T Consensus       164 PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~--~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~  237 (251)
T cd05041         164 PEALNYGRYTSESDVWSYGILLWETFSLGDTPYPG--MSN--QQTRERIESGYRMPA--PQLCPEEIYRLMLQCWAYDPE  237 (251)
T ss_pred             hHhhccCCCCcchhHHHHHHHHHHHHhccCCCCcc--CCH--HHHHHHHhcCCCCCC--CccCCHHHHHHHHHHhccChh
Confidence            354445667889999999999999999 7777421  100  000111111100000  001112456778899999999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||++.||.+.|+
T Consensus       238 ~Rp~~~ell~~l~  250 (251)
T cd05041         238 NRPSFSEIYNELQ  250 (251)
T ss_pred             hCcCHHHHHHHhh
Confidence            9999999999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=97.95  E-value=3.8e-06  Score=85.07  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc---hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+......+.++|||||||+++|++||+.|.+   ..+++..  ...+.+++.. .   ....   .+.++...|...+
T Consensus       171 pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~--~~~~~~~~~~-~---~~~~---~~~~~i~~~l~~~  241 (257)
T cd08225         171 PEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLK--ICQGYFAPIS-P---NFSR---DLRSLISQLFKVS  241 (257)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHH--HhcccCCCCC-C---CCCH---HHHHHHHHHhccC
Confidence            354455667899999999999999999999964   1111111  0111111111 0   1111   2345567799999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||+|.||++
T Consensus       242 p~~Rpt~~~ll~  253 (257)
T cd08225         242 PRDRPSITSILK  253 (257)
T ss_pred             hhhCcCHHHHhh
Confidence            999999999965

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=97.95  E-value=3.1e-06  Score=88.27  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.|+|||||||++.|++||+.|..-............--.+.+..     ...-..+.++.-.|.+.+|++||+|.+
T Consensus       189 ~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~~l~~~p~~Rp~~~~  263 (307)
T cd06607         189 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSS-----NDWSDYFRNFVDSCLQKIPQDRPSSEE  263 (307)
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCc-----hhhCHHHHHHHHHHhcCChhhCcCHHH
Confidence            446789999999999999999999853110000000000000011110     011123456667999999999999999


Q ss_pred             HHHH
Q 003931          756 VAQE  759 (785)
Q Consensus       756 vv~~  759 (785)
                      |+..
T Consensus       264 il~~  267 (307)
T cd06607         264 LLKH  267 (307)
T ss_pred             HhcC
Confidence            9764

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=4.6e-07  Score=76.67  Aligned_cols=84  Identities=25%  Similarity=0.364  Sum_probs=46.2

Q ss_pred             CCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEE
Q 003931          222 SKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD  301 (785)
Q Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  301 (785)
                      ..|+..++++|.+. .+|+.+-..++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++..||
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            44444555555554 455554444455555666666555 34555556666666666666555 3444455555555666


Q ss_pred             CcCCccc
Q 003931          302 LSGNQLS  308 (785)
Q Consensus       302 Ls~n~l~  308 (785)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            6555554

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=97.94  E-value=5.1e-06  Score=88.13  Aligned_cols=88  Identities=24%  Similarity=0.310  Sum_probs=55.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.++|||||||++.|+++ |+.|..-...   .....+.+..  ....+...    -..+.+++..|++.+|
T Consensus       251 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~cl~~~p  323 (343)
T cd05103         251 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI---DEEFCRRLKEGTRMRAPDYT----TPEMYQTMLDCWHGEP  323 (343)
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccc---cHHHHHHHhccCCCCCCCCC----CHHHHHHHHHHccCCh
Confidence            44445567889999999999999997 8887431100   0000000000  00000001    1235678899999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||+|.||++.|+.+-+
T Consensus       324 ~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         324 SQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             hhCcCHHHHHHHHHHHHh
Confidence            999999999999987644

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=97.94  E-value=3.9e-06  Score=85.04  Aligned_cols=80  Identities=19%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+......+.++||||||++++|++||+.|.+-   ......  ...... +.+..   .   .-..+.++...|.+.+
T Consensus       171 PE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~--~~~~~~-~~~~~---~---~~~~~~~li~~~l~~~  241 (257)
T cd08223         171 PELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYR--IIEGKL-PPMPK---D---YSPELGELIATMLSKR  241 (257)
T ss_pred             hhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHH--HHhcCC-CCCcc---c---cCHHHHHHHHHHhccC
Confidence            3555556678899999999999999999998541   111100  000000 01110   0   1123557788999999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||+|+++++
T Consensus       242 p~~Rp~~~~~l~  253 (257)
T cd08223         242 PEKRPSVKSILR  253 (257)
T ss_pred             cccCCCHHHHhc
Confidence            999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.94  E-value=4.7e-06  Score=94.43  Aligned_cols=80  Identities=24%  Similarity=0.362  Sum_probs=56.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      |--.....|.|+|||||||+|.|++| |.-|..       +.++++...        ++.    ....|-.++..++..|
T Consensus       491 Esl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~--------r~~----~P~~c~~eiY~iM~~C  558 (609)
T KOG0200|consen  491 ESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGN--------RME----QPEHCSDEIYDLMKSC  558 (609)
T ss_pred             HHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCC--------CCC----CCCCCCHHHHHHHHHH
Confidence            43344678999999999999999999 555531       222222111        111    1223445567889999


Q ss_pred             CCCCCCCCCChHHHHHHHHh
Q 003931          743 TSTTPDTRPSMRFVAQELSA  762 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~  762 (785)
                      ++.+|++||+..+.+..++.
T Consensus       559 W~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  559 WNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             hCCCcccCCCHHHHHHHHHH
Confidence            99999999999999999877

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=97.92  E-value=6.8e-06  Score=84.76  Aligned_cols=80  Identities=19%  Similarity=0.282  Sum_probs=47.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-......-........+.+..+. ...   ..+..+...|.+.+|++||+|.|
T Consensus       204 ~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~li~~~l~~~p~~Rps~~e  279 (286)
T cd06638         204 STYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPE-LWS---NEFNDFIRKCLTKDYEKRPTVSD  279 (286)
T ss_pred             ccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCC-CcC---HHHHHHHHHHccCCcccCCCHHH
Confidence            34678999999999999999999996411110000000000001110000 000   12446677899999999999999


Q ss_pred             HHHH
Q 003931          756 VAQE  759 (785)
Q Consensus       756 vv~~  759 (785)
                      |++.
T Consensus       280 ll~~  283 (286)
T cd06638         280 LLQH  283 (286)
T ss_pred             Hhhc
Confidence            9753

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=97.92  E-value=2.5e-06  Score=91.91  Aligned_cols=86  Identities=17%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCC--CCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQR--LPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.++|||||||+++|++| |+.|..-..   ......+.+...  ...+. .   .-..+.+++-.|...+|
T Consensus       311 E~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~---~~~~~~~~~~~~~~~~~p~-~---~~~~l~~li~~cl~~~P  383 (401)
T cd05107         311 ESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELP---MNEQFYNAIKRGYRMAKPA-H---ASDEIYEIMQKCWEEKF  383 (401)
T ss_pred             HHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCC---chHHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCCCh
Confidence            33334456789999999999999998 888843110   000011111111  11110 1   11235567778999999


Q ss_pred             CCCCChHHHHHHHHhc
Q 003931          748 DTRPSMRFVAQELSAK  763 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~  763 (785)
                      ++||+|+||++.|+++
T Consensus       384 ~~RPs~~ell~~L~~~  399 (401)
T cd05107         384 EIRPDFSQLVHLVGDL  399 (401)
T ss_pred             hHCcCHHHHHHHHHHH
Confidence            9999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=97.91  E-value=3.9e-06  Score=86.79  Aligned_cols=85  Identities=16%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||+++|++||+.|.........-......+.+........ .+.   +..+.-.|...+|.+|
T Consensus       188 E~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~li~~~l~~~P~~R  263 (292)
T cd06658         188 EVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKV-SSV---LRGFLDLMLVREPSQR  263 (292)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCcccccccc-CHH---HHHHHHHHccCChhHC
Confidence            444455678899999999999999999999531100000000111112222111001 112   2234556899999999


Q ss_pred             CChHHHHHH
Q 003931          751 PSMRFVAQE  759 (785)
Q Consensus       751 p~m~~vv~~  759 (785)
                      |++.||++.
T Consensus       264 pt~~~il~~  272 (292)
T cd06658         264 ATAQELLQH  272 (292)
T ss_pred             cCHHHHhhC
Confidence            999999763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.89  E-value=1.9e-06  Score=81.62  Aligned_cols=189  Identities=22%  Similarity=0.154  Sum_probs=93.7

Q ss_pred             CCCCCCccEEECCCCCCcccCChh---hhcCCCCCcEEECCCCCCcccCCc-------------cccCCCCCcEEEcCCC
Q 003931           73 ILTCRNLTYLDLSLNKLSGLIPER---LFTNLGKLEYLNLTENQFQGKLSP-------------NVSKLSNLIDLRLATN  136 (785)
Q Consensus        73 ~~~l~~L~~L~Ls~n~i~~~~~~~---~f~~l~~L~~L~Ls~n~i~~~~~~-------------~~~~l~~L~~L~L~~n  136 (785)
                      +.+|++|+..+||.|.+....|+.   +.++-..|++|.+++|.+...--.             ....-+.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            344555555555555444333321   224445555555555544311111             1123456666666666


Q ss_pred             cccccCC----cCCCCCCCCCEEEcccCccccc-----CCccccCCCCCCEEEcccCcCcccCC----ccccCCcccCee
Q 003931          137 KFSGPIP----GDIGSMSNLQLVELFNNSFTGQ-----IPSSLGQLKNLQHLDLRMNALNYTIP----PELGLCTNLSYL  203 (785)
Q Consensus       137 ~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L  203 (785)
                      ++..-..    ..+..=.+|+++.+..|.|.-.     ....+..+.+|+.||+..|.++....    ..+..-+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            6542110    0112224666777777665421     11123345677777777776652211    222333456777


Q ss_pred             eccccccccCCchhc----c--CCCCCCEEEccCCCCccccCcc------ccCCCCCCCEEEeecCcCcc
Q 003931          204 ALAVNQLSGGLPLSL----S--NLSKLNDLGLSDNFLSGEISAN------LIGNWTELESLQIQNNSFMG  261 (785)
Q Consensus       204 ~l~~n~i~~~~~~~l----~--~l~~L~~L~L~~n~l~~~~~~~------~~~~l~~L~~L~L~~n~l~~  261 (785)
                      .+..|-++.....++    .  ..++|..|...+|...+.+...      .-.+++-|..|.+.+|++..
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            777776654332222    1  2466777777777665533222      12356667777777777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.89  E-value=8.6e-07  Score=75.04  Aligned_cols=83  Identities=30%  Similarity=0.297  Sum_probs=41.6

Q ss_pred             CCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeeccc
Q 003931          465 RLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLS  544 (785)
Q Consensus       465 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls  544 (785)
                      .|+..+|++|.+....+..-...+.++.+++++|.|+ .+|.++..++.|+.++++.|.+. ..|..+..+.++-.|+.-
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            4445555555555333332233345555555555555 34455555555555555555554 334444445555555555


Q ss_pred             CCccc
Q 003931          545 NNHLT  549 (785)
Q Consensus       545 ~n~l~  549 (785)
                      +|.+.
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55444

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=97.89  E-value=5.4e-06  Score=83.92  Aligned_cols=82  Identities=16%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |.......+.++|||||||++.|++||+.|.+-...   ......+...........   .-..+.++...|++.+|++|
T Consensus       171 E~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~R  244 (256)
T cd08220         171 ELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL---PALVLKIMSGTFAPISDR---YSPDLRQLILSMLNLDPSKR  244 (256)
T ss_pred             hhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch---HHHHHHHHhcCCCCCCCC---cCHHHHHHHHHHccCChhhC
Confidence            333344567899999999999999999999541100   000000110000000000   11234567789999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |+|.|+++
T Consensus       245 pt~~~ll~  252 (256)
T cd08220         245 PQLSQIMA  252 (256)
T ss_pred             CCHHHHhh
Confidence            99999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=97.89  E-value=3.8e-06  Score=85.53  Aligned_cols=87  Identities=18%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCc--ccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGE--LFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.++||||||+++.|++||+.|..-..-....  .....+.+.........  ..-..+.++...|+..+|
T Consensus       168 PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p  245 (265)
T cd06605         168 PERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSG--KFSPDFQDFVNLCLIKDP  245 (265)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChh--hcCHHHHHHHHHHcCCCc
Confidence            35555557789999999999999999999985311000000  00011111111000000  011224466778999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.+++.
T Consensus       246 ~~Rpt~~~ll~  256 (265)
T cd06605         246 RERPSYKELLE  256 (265)
T ss_pred             hhCcCHHHHhh
Confidence            99999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=97.89  E-value=8.5e-06  Score=83.11  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=46.8

Q ss_pred             ccccccceeeeehhhhhhhhC-CCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMG-RHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltg-k~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      ..+.++|||||||+++|++|+ +.|.+      ....+. .+....+.++.+.....   +.+.   ++.-.|. .+|++
T Consensus       184 ~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~---~l~~~c~-~~P~~  255 (268)
T cd05086         184 EQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVI-KDQQVKLFKPQLELPYS---ERWY---EVLQFCW-LSPEK  255 (268)
T ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-hhcccccCCCccCCCCc---HHHH---HHHHHHh-hCccc
Confidence            457899999999999999985 55643      111111 11122344555432211   2222   2334577 56999


Q ss_pred             CCChHHHHHHHH
Q 003931          750 RPSMRFVAQELS  761 (785)
Q Consensus       750 Rp~m~~vv~~l~  761 (785)
                      ||+|++|+++|.
T Consensus       256 Rp~~~~i~~~l~  267 (268)
T cd05086         256 RATAEEVHRLLT  267 (268)
T ss_pred             CCCHHHHHHHhc
Confidence            999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=97.89  E-value=6.8e-06  Score=85.18  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=50.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc--CCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD--QRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-...  .........+  +.+..+. .   .-..+.++...|...+|
T Consensus       185 PE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~-~---~~~~l~~li~~~l~~~p  258 (296)
T cd06654         185 PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRALYLIATNGTPELQNPE-K---LSAIFRDFLNRCLDMDV  258 (296)
T ss_pred             HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH--HHhHHHHhcCCCCCCCCcc-c---cCHHHHHHHHHHCcCCc
Confidence            3444455678899999999999999999999531000  0000000000  1111000 0   01224456778999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.||++
T Consensus       259 ~~Rpt~~eil~  269 (296)
T cd06654         259 EKRGSAKELLQ  269 (296)
T ss_pred             ccCcCHHHHhh
Confidence            99999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=97.88  E-value=6.3e-06  Score=83.66  Aligned_cols=84  Identities=27%  Similarity=0.407  Sum_probs=52.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++||||+||++.|++| |+.|.+-.....   ....+.+. ....+. .   .-..+.++...|+..+|
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~-~---~~~~~~~li~~~l~~~p  248 (262)
T cd00192         176 PESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEE---VLEYLRKGYRLPKPE-Y---CPDELYELMLSCWQLDP  248 (262)
T ss_pred             HHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHHHcCCCCCCCc-c---CChHHHHHHHHHccCCc
Confidence            344444567889999999999999999 588864211100   00011110 110000 1   11235567788999999


Q ss_pred             CCCCChHHHHHHH
Q 003931          748 DTRPSMRFVAQEL  760 (785)
Q Consensus       748 ~~Rp~m~~vv~~l  760 (785)
                      ++||++.|+++.|
T Consensus       249 ~~Rps~~~l~~~l  261 (262)
T cd00192         249 EDRPTFSELVERL  261 (262)
T ss_pred             ccCcCHHHHHHhh
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=2.7e-05  Score=70.98  Aligned_cols=126  Identities=21%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      =+.++|.+.++..+..-. .-..+...+||++|.+...  ..|..++.|.+|.+.+|+|+ .|...+-.-+++|+.|.|.
T Consensus        21 e~e~~LR~lkip~ienlg-~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLG-ATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccchhhcc-ccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            344555555554443200 1123455566666665432  34555666666666666666 3444443445666666666


Q ss_pred             CCCCcccC-CccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEcccC
Q 003931          111 ENQFQGKL-SPNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELFNN  160 (785)
Q Consensus       111 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~n  160 (785)
                      +|+|.... -..+..|+.|++|.+-+|.++..--   ..+..+++|++||..+-
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            66655221 1234556677777777766653211   13456777777777654

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.88  E-value=5e-06  Score=84.31  Aligned_cols=76  Identities=25%  Similarity=0.397  Sum_probs=47.3

Q ss_pred             ccccccceeeeehhhhhhhhCCC-CCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRH-PGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~-p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ..+.++|||||||++.|++||+. |..-.....    ...+.+.+..-+...    -..+.++.-.|.+.+|++||+|++
T Consensus       181 ~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~li~~~l~~~p~~Rps~~~  252 (258)
T cd05078         181 NLSLAADKWSFGTTLWEIFSGGDKPLSALDSQK----KLQFYEDRHQLPAPK----WTELANLINQCMDYEPDFRPSFRA  252 (258)
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCChhhccHHH----HHHHHHccccCCCCC----cHHHHHHHHHHhccChhhCCCHHH
Confidence            35789999999999999999964 422110000    000111111001001    123457788899999999999999


Q ss_pred             HHHHH
Q 003931          756 VAQEL  760 (785)
Q Consensus       756 vv~~l  760 (785)
                      ++++|
T Consensus       253 il~~l  257 (258)
T cd05078         253 IIRDL  257 (258)
T ss_pred             HHHhc
Confidence            99886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=97.87  E-value=7.1e-06  Score=83.29  Aligned_cols=86  Identities=30%  Similarity=0.456  Sum_probs=54.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCccccccccc-CCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLD-QRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.++|||||||++.|++| |+.|..-..   .......+.. .....+...    -..+.+++..|...+|
T Consensus       173 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~l~~~p  245 (261)
T cd05034         173 PEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT---NREVLEQVERGYRMPRPPNC----PEELYDLMLQCWDKDP  245 (261)
T ss_pred             HHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC---HHHHHHHHHcCCCCCCCCCC----CHHHHHHHHHHcccCc
Confidence            355555667889999999999999999 888842100   0000000000 000000001    1235677889999999


Q ss_pred             CCCCChHHHHHHHHh
Q 003931          748 DTRPSMRFVAQELSA  762 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~  762 (785)
                      ++||++.++++.|+.
T Consensus       246 ~~Rp~~~~l~~~l~~  260 (261)
T cd05034         246 EERPTFEYLQSFLED  260 (261)
T ss_pred             ccCCCHHHHHHHHhc
Confidence            999999999988864

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=97.86  E-value=9.5e-06  Score=84.15  Aligned_cols=97  Identities=20%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-.............-.+....+ ....   ..+.++...|.+.+|++
T Consensus       184 PE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~li~~~l~~~p~~  259 (297)
T cd06656         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNP-ERLS---AVFRDFLNRCLEMDVDR  259 (297)
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCc-cccC---HHHHHHHHHHccCChhh
Confidence            3544456678899999999999999999998531100000000000000111000 0001   12345677899999999


Q ss_pred             CCChHHHHH--HHHhcccccCCC
Q 003931          750 RPSMRFVAQ--ELSAKTQAYLPE  770 (785)
Q Consensus       750 Rp~m~~vv~--~l~~~~~~~~~~  770 (785)
                      ||+|.||++  .++..+..+...
T Consensus       260 Rps~~~il~~~~~~~~~~~~~~~  282 (297)
T cd06656         260 RGSAKELLQHPFLKLAKPLSSLT  282 (297)
T ss_pred             CcCHHHHhcCchhcccccccccC
Confidence            999999987  455554444333

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=97.86  E-value=1.2e-05  Score=82.20  Aligned_cols=77  Identities=29%  Similarity=0.342  Sum_probs=45.6

Q ss_pred             ccccccceeeeehhhhhhhh-CCCCCchh------hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMM-GRHPGELI------TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLEllt-gk~p~~~~------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      ..+.++|||||||+++|++| |+.|..-.      .+... .......++.+...   ..+.+.   ++.-.|. .+|++
T Consensus       185 ~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~---~l~~~c~-~~P~~  256 (269)
T cd05087         185 DQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVR-EQQLKLPKPRLKLP---LSDRWY---EVMQFCW-LQPEQ  256 (269)
T ss_pred             CCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhh-cccCCCCCCccCCC---CChHHH---HHHHHHh-cCccc
Confidence            35789999999999999996 99885311      01000 01111222222111   112222   2334576 57999


Q ss_pred             CCChHHHHHHHH
Q 003931          750 RPSMRFVAQELS  761 (785)
Q Consensus       750 Rp~m~~vv~~l~  761 (785)
                      ||+|.||++.|.
T Consensus       257 Rpt~~~l~~~l~  268 (269)
T cd05087         257 RPSAEEVHLLLS  268 (269)
T ss_pred             CCCHHHHHHHhc
Confidence            999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=97.85  E-value=6e-06  Score=85.26  Aligned_cols=78  Identities=22%  Similarity=0.253  Sum_probs=48.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc---cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL---DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~---d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ..+.++|||||||++.|++||+.|..-.....  ....++.   .+.+.....  ...-..+.++.-.|.+.+|++||++
T Consensus       186 ~~~~~~Di~slG~il~el~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~~l~~~p~~Rpt~  261 (288)
T cd06616         186 GYDVRSDVWSLGITLYEVATGKFPYPKWNSVF--DQLTQVVKGDPPILSNSEE--REFSPSFVNFINLCLIKDESKRPKY  261 (288)
T ss_pred             CCcchhhhhHHHHHHHHHHhCCCCchhcchHH--HHHhhhcCCCCCcCCCcCC--CccCHHHHHHHHHHccCChhhCcCH
Confidence            56789999999999999999999953110000  0011111   112211100  0112235567789999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .||++
T Consensus       262 ~~i~~  266 (288)
T cd06616         262 KELLE  266 (288)
T ss_pred             HHHhc
Confidence            99875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=97.85  E-value=7.1e-06  Score=83.35  Aligned_cols=78  Identities=19%  Similarity=0.314  Sum_probs=48.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCc-ccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGE-LFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~-~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ..+.++|||||||++.|++||+.|..-....... ....+.+.+ .+..    .......+.++.-.|...+|.+||++.
T Consensus       180 ~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rpt~~  255 (262)
T cd06613         180 GYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKD----KEKWSPVFHDFIKKCLTKDPKKRPTAT  255 (262)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccc----hhhhhHHHHHHHHHHcCCChhhCCCHH
Confidence            6778999999999999999999995311100000 000010111 1110    011122356778899999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ||+.
T Consensus       256 ~il~  259 (262)
T cd06613         256 KLLQ  259 (262)
T ss_pred             HHhc
Confidence            9864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=97.85  E-value=6.1e-06  Score=84.51  Aligned_cols=78  Identities=17%  Similarity=0.197  Sum_probs=47.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.|+|||||||++.|++||+.|..-...............+.+..    .......+.++...|.+.+|++||++.||
T Consensus       194 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~dp~~Rpt~~~l  269 (275)
T cd06608         194 SYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKS----PENWSKKFNDFISECLIKNYEQRPFMEEL  269 (275)
T ss_pred             CccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCc----hhhcCHHHHHHHHHHhhcChhhCcCHHHH
Confidence            45679999999999999999999953110000000000001111111    01111234467778999999999999999


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       270 l~  271 (275)
T cd06608         270 LE  271 (275)
T ss_pred             hc
Confidence            75

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=97.84  E-value=7.2e-06  Score=82.94  Aligned_cols=82  Identities=20%  Similarity=0.239  Sum_probs=50.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccc-ccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF-LKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++||||||+++.|++||+.|.+--.+...... ......+ +..   ...   ..+.++.-.|++.+|++
T Consensus       170 E~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~---~~~---~~~~~li~~~l~~~P~~  242 (255)
T cd08219         170 EIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKP-LPS---HYS---YELRSLIKQMFKRNPRS  242 (255)
T ss_pred             HHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCC-CCc---ccC---HHHHHHHHHHHhCCccc
Confidence            444445678899999999999999999999641111100000 0000010 100   111   12345567899999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||++.|++..
T Consensus       243 Rp~~~~il~~  252 (255)
T cd08219         243 RPSATTILSR  252 (255)
T ss_pred             CCCHHHHhhc
Confidence            9999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=97.84  E-value=7.1e-06  Score=84.19  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=48.1

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||++.|++||+.|.+-...............+.+...     .....+.++...|...+|++||++.|+
T Consensus       178 ~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~l~~~p~~R~~~~~i  252 (277)
T cd06917         178 YYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDN-----GYSKLLREFVAACLDEEPKERLSAEEL  252 (277)
T ss_pred             ccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcc-----cCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence            357899999999999999999999641111100000001111111110     012235567788999999999999999


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       253 l~  254 (277)
T cd06917         253 LK  254 (277)
T ss_pred             hh
Confidence            75

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.84  E-value=7.9e-06  Score=83.63  Aligned_cols=77  Identities=21%  Similarity=0.320  Sum_probs=48.6

Q ss_pred             cccccccceeeeehhhhhh-hhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEV-MMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLEl-ltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||+++|+ ++|+.|..-.    .......+.+.....+...    ...+.+++..|.+.+|++||+|.
T Consensus       196 ~~~~~~~Dv~slG~~l~el~~~g~~p~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~li~~cl~~~p~~Rps~~  267 (274)
T cd05076         196 NSLSTAADKWSFGTTLLEICFDGEVPLKER----TPSEKERFYEKKHRLPEPS----CKELATLISQCLTYEPTQRPSFR  267 (274)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCcccc----ChHHHHHHHHhccCCCCCC----ChHHHHHHHHHcccChhhCcCHH
Confidence            3467899999999999999 5788875310    0000011111111111101    12355778899999999999999


Q ss_pred             HHHHHH
Q 003931          755 FVAQEL  760 (785)
Q Consensus       755 ~vv~~l  760 (785)
                      +|++.|
T Consensus       268 ~il~~L  273 (274)
T cd05076         268 TILRDL  273 (274)
T ss_pred             HHHHhh
Confidence            998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.84  E-value=3.7e-06  Score=87.09  Aligned_cols=85  Identities=14%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhh----ccC--cccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITS----LSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~----~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      |+......+.++|||||||+++|++||+.|..-...    +..  .+....+..+.+...  .   +-..+.++.-.|..
T Consensus       203 e~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~  277 (294)
T PHA02882        203 DAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIK--N---ANKFIYDFIECVTK  277 (294)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccC--C---CCHHHHHHHHHHHh
Confidence            444556678999999999999999999999531100    000  000111111111100  1   11234566778999


Q ss_pred             CCCCCCCChHHHHHHH
Q 003931          745 TTPDTRPSMRFVAQEL  760 (785)
Q Consensus       745 ~~p~~Rp~m~~vv~~l  760 (785)
                      .+|++||++.++.+.+
T Consensus       278 ~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        278 LSYEEKPDYDALIKIF  293 (294)
T ss_pred             CCCCCCCCHHHHHHhh
Confidence            9999999999998765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.84  E-value=1.8e-06  Score=81.84  Aligned_cols=88  Identities=23%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             CCCCCcEEECcCcccccc----CChhccCCCCCCEEECcCCcccccCCccC------cCCCCCCEEEcccccccCCCCCC
Q 003931          269 LLTKLQYLFLYRNNFSGP----IPSEIEKLTSLENLDLSGNQLSGTIPPTL------WNLTNLLSLQLFSNNLSGTIPPE  338 (785)
Q Consensus       269 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l------~~l~~L~~L~L~~n~l~~~~p~~  338 (785)
                      .+.+|+.|+|+.|-++-.    +..++...+.|+.|.+.+|-++..-..++      ...|+|..|...+|...+.+-..
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~  291 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD  291 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence            345555555555554321    11223344455556665555543221111      12355666666666544321111


Q ss_pred             -------CCCCCCCCEEEccCCcCc
Q 003931          339 -------IGSMASLVAFDVNTNQLH  356 (785)
Q Consensus       339 -------~~~l~~L~~L~l~~n~l~  356 (785)
                             -+.++-|..+.+.+|++.
T Consensus       292 ~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         292 ISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             echhhhhhcccHHHHHHHHccCcch
Confidence                   134566666677777765

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=97.83  E-value=8.4e-06  Score=83.62  Aligned_cols=83  Identities=18%  Similarity=0.282  Sum_probs=51.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|..-............---+.+...      .-..+.++...|.+.+|++|
T Consensus       171 E~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~l~~~p~~R  244 (277)
T cd06641         171 EVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGN------YSKPLKEFVEACLNKEPSFR  244 (277)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcc------cCHHHHHHHHHHccCChhhC
Confidence            444455677899999999999999999999641110000000000000111110      11234567788999999999


Q ss_pred             CChHHHHHH
Q 003931          751 PSMRFVAQE  759 (785)
Q Consensus       751 p~m~~vv~~  759 (785)
                      |+|.++++.
T Consensus       245 p~~~~~l~~  253 (277)
T cd06641         245 PTAKELLKH  253 (277)
T ss_pred             cCHHHHHhC
Confidence            999999873

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=97.83  E-value=7.1e-06  Score=84.55  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+..+...+.++|||||||++.|++||+.|..-   ......   ......+...... .   .-..+.++.-.|.+.+|
T Consensus       185 E~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~---~~~~~~~~~~~~~-~---~~~~l~~li~~~l~~~p  257 (285)
T cd06648         185 EVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKR---IRDNLPPKLKNLH-K---VSPRLRSFLDRMLVRDP  257 (285)
T ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHH---HHhcCCCCCcccc-c---CCHHHHHHHHHHcccCh
Confidence            444445568899999999999999999999531   111100   0001111111110 0   01235567788999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.++++
T Consensus       258 ~~Rpt~~~il~  268 (285)
T cd06648         258 AQRATAAELLN  268 (285)
T ss_pred             hhCcCHHHHcc
Confidence            99999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=97.83  E-value=4.2e-06  Score=86.00  Aligned_cols=80  Identities=24%  Similarity=0.358  Sum_probs=48.6

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhh----hccCcccccccc---cCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELIT----SLSGELFLKDVL---DQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~----~~~~~~~~~~~~---d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      .....+.++|||||||++.|++||+.|.+-..    +.........+.   .+.+...  ...   ..+.++...|.+.+
T Consensus       166 ~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~li~~~l~~~  240 (279)
T cd06619         166 SGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVG--QFS---EKFVHFITQCMRKQ  240 (279)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCC--cCC---HHHHHHHHHHhhCC
Confidence            34456789999999999999999999964110    000000001111   1111110  011   12456677899999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||+|.||++
T Consensus       241 P~~Rp~~~eil~  252 (279)
T cd06619         241 PKERPAPENLMD  252 (279)
T ss_pred             hhhCCCHHHHhc
Confidence            999999999865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=4.6e-05  Score=79.16  Aligned_cols=178  Identities=20%  Similarity=0.279  Sum_probs=106.6

Q ss_pred             chhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCC-cccCcCCcccccCCC
Q 003931          483 DWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN-HLTGEIPKSISNLTE  561 (785)
Q Consensus       483 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~  561 (785)
                      .+..|..++.|++++|.++. +|. +  -.+|+.|+++++.-...+|..+.  .+|++|++++| .+. .+|.      +
T Consensus        47 r~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------c
Confidence            35667899999999998873 452 2  24699999988555446676553  58999999998 444 4554      5


Q ss_pred             CCeEecCCCcCc--cCCCccccccCCCcEEeCCCCc-Ccc-cCCcccchh-hhhhheeecccccCCCCCCcccccCCCCc
Q 003931          562 LAYLDLSNNKLT--GDVPQELGRFDKLLSLNLSHND-LSG-EIPSNLGNL-FVLQYMLDLSSNSLSGTIPQELGKLTSLE  636 (785)
Q Consensus       562 L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ls~N~-l~~-~~p~~~~~l-~~l~~~l~ls~n~l~~~~~~~~~~l~~L~  636 (785)
                      |+.|+++++...  +.+|.      +|+.|.+.+++ ... .+|.   .+ .+|+. |++++|... ..|..+.  .+|+
T Consensus       114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~-L~Is~c~~i-~LP~~LP--~SLk  180 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKT-LSLTGCSNI-ILPEKLP--ESLQ  180 (426)
T ss_pred             cceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccE-EEecCCCcc-cCccccc--ccCc
Confidence            777788776543  23343      45566664322 110 1111   11 23444 788877754 3344333  5888


Q ss_pred             eEeccCCce------eeecCCcccccccceeeecCCCchhhhhhhcccccccceeee
Q 003931          637 ILNLSRNQL------SGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSF  687 (785)
Q Consensus       637 ~L~l~~n~l------~~~~~~~~~~l~~l~~l~l~~n~l~e~~~~~~~t~k~DVYSf  687 (785)
                      +|+++.+..      ...+|+.+ .+.-...+.++.+.+++-+.++......|+|+|
T Consensus       181 ~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~~  236 (426)
T PRK15386        181 SITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALHF  236 (426)
T ss_pred             EEEecccccccccCccccccccc-EechhhhcccCHHHhhcccccccCcccchhccc
Confidence            888877631      22455555 343334455666666666666555555577776

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=97.82  E-value=7.5e-06  Score=82.50  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++||||||+++.|++||+.|.+-..............-+.+.... .   .-..+.++...|.+.+|++
T Consensus       166 PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~i~~~l~~~p~~  241 (253)
T cd05122         166 PEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPE-K---WSDEFKDFLKKCLQKNPEK  241 (253)
T ss_pred             HHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCccc-c---cCHHHHHHHHHHccCChhh
Confidence            35544555789999999999999999999996421110000000000000111000 0   0123456677999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|.||.+
T Consensus       242 R~t~~~~l~  250 (253)
T cd05122         242 RPTAEQLLK  250 (253)
T ss_pred             CCCHHHHhc
Confidence            999999864

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=97.80  E-value=2.1e-05  Score=73.88  Aligned_cols=85  Identities=20%  Similarity=0.317  Sum_probs=59.2

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhhhccCccc-ccccccCCCCCCCc-hhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF-LKDVLDQRLPPPTG-QLAEAVVLTINVALACTSTTPDTRP  751 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~-~~~~~d~~l~~~~~-~~~~~~~~~~~ial~C~~~~p~~Rp  751 (785)
                      ....+++|.||||+|++|.+++-|-.|.+.+..  +.+. .-.|..+.+..+.. ...+.   +.++.-.|.+.+|.+||
T Consensus       214 ~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~--~GgSlaLAv~n~q~s~P~~~~yse~---l~~lik~mlqvdP~qRP  288 (302)
T KOG2345|consen  214 SHCTITERTDIWSLGCTLYAMMFGESPFERIYQ--QGGSLALAVQNAQISIPNSSRYSEA---LHQLIKSMLQVDPNQRP  288 (302)
T ss_pred             cCcccccccchhhhhHHHHHHHHcCCcchHHhh--cCCeEEEeeeccccccCCCCCccHH---HHHHHHHHhcCCcccCC
Confidence            345678999999999999999999999873322  2222 23455555543221 11222   34556689999999999


Q ss_pred             ChHHHHHHHHhc
Q 003931          752 SMRFVAQELSAK  763 (785)
Q Consensus       752 ~m~~vv~~l~~~  763 (785)
                      +..++...++..
T Consensus       289 ~i~~ll~~~d~L  300 (302)
T KOG2345|consen  289 TIPELLSKLDDL  300 (302)
T ss_pred             CHHHHHHHHHhh
Confidence            999999888754

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.80  E-value=1e-05  Score=82.09  Aligned_cols=76  Identities=29%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             ccccccceeeeehhhhhhhhC-CCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMG-RHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltg-k~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ..+.++|||||||+++|+++| ..|............   ..+....... .    ...+.++...|...+|++||+|.|
T Consensus       182 ~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~-~----~~~~~~li~~~l~~~p~~Rpt~~~  253 (259)
T cd05037         182 SLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERF---YQDQHRLPMP-D----CAELANLINQCWTYDPTKRPSFRA  253 (259)
T ss_pred             CcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHH---HhcCCCCCCC-C----chHHHHHHHHHhccChhhCCCHHH
Confidence            678899999999999999995 555421111000000   0011111100 1    134567788999999999999999


Q ss_pred             HHHHH
Q 003931          756 VAQEL  760 (785)
Q Consensus       756 vv~~l  760 (785)
                      |++.|
T Consensus       254 il~~l  258 (259)
T cd05037         254 ILRDL  258 (259)
T ss_pred             HHHhc
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=97.79  E-value=2e-05  Score=81.25  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=50.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCch-------hhhcc---Cc---cccccc------ccCCCCCCCchhHHH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-------ITSLS---GE---LFLKDV------LDQRLPPPTGQLAEA  731 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-------~~~~~---~~---~~~~~~------~d~~l~~~~~~~~~~  731 (785)
                      |+......+.|+|||||||++.||+||+.|.+.       .+...   ..   .+....      ...............
T Consensus       176 E~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (287)
T cd07838         176 EVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPE  255 (287)
T ss_pred             HHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhh
Confidence            444556678899999999999999999877431       11110   00   000000      000000000000001


Q ss_pred             -HHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          732 -VVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       732 -~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                       ...+.++...|++.+|++||+|.|+++
T Consensus       256 ~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         256 ICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             hhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence             123457788999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=97.79  E-value=1.1e-05  Score=82.13  Aligned_cols=82  Identities=20%  Similarity=0.336  Sum_probs=49.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||++.|++||+.|.+-..-...-....+...+.+..   ...+   .+..+.-.|.+.+|.+|
T Consensus       182 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~li~~~l~~~p~~R  255 (267)
T cd06628         182 EVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPS---NISS---EAIDFLEKTFEIDHNKR  255 (267)
T ss_pred             hHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCcCCc---ccCH---HHHHHHHHHccCCchhC
Confidence            44444566789999999999999999999964111000000011111222211   1112   23345568999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.||++
T Consensus       256 p~~~~il~  263 (267)
T cd06628         256 PTAAELLK  263 (267)
T ss_pred             cCHHHHhh
Confidence            99999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.79  E-value=6.7e-06  Score=84.71  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhh------ccC--cccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITS------LSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~------~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      |+-.....+.++|||||||+++|++||+.|.+-..-      ...  ......+........  ...+.-..+.++...|
T Consensus       172 E~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~  249 (284)
T cd06620         172 ERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRL--PSSDFPEDLRDFVDAC  249 (284)
T ss_pred             HHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCC--CchhcCHHHHHHHHHH
Confidence            444445678899999999999999999999641100      000  000111111111000  0011112355677889


Q ss_pred             CCCCCCCCCChHHHHHHH
Q 003931          743 TSTTPDTRPSMRFVAQEL  760 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l  760 (785)
                      .+.+|++||+|.||.++.
T Consensus       250 l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         250 LLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             hcCCcccCcCHHHHhcCc
Confidence            999999999999998864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=97.79  E-value=9.4e-06  Score=82.19  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=50.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++||||||++++|+++|+.|.+-......  ....+.+.... ......   -..+.++...|++.+|+
T Consensus       172 pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~l~~~p~  246 (260)
T cd06606         172 PEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMA--ALYKIGSSGEPPEIPEHL---SEEAKDFLRKCLRRDPK  246 (260)
T ss_pred             HhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH--HHHhccccCCCcCCCccc---CHHHHHHHHHhCcCChh
Confidence            3444455588999999999999999999999542110000  00011110000 000011   12345667789999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||+|.|+++
T Consensus       247 ~Rp~~~~ll~  256 (260)
T cd06606         247 KRPTADELLQ  256 (260)
T ss_pred             hCCCHHHHhh
Confidence            9999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.79  E-value=4.3e-05  Score=69.64  Aligned_cols=125  Identities=22%  Similarity=0.184  Sum_probs=75.7

Q ss_pred             CcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcC
Q 003931           55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLA  134 (785)
Q Consensus        55 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  134 (785)
                      =+.+++.+.++..+.. .=..+.+...+||++|.+. .++.  |.+++.|.+|.|.+|+|+.+.|.--.-+++|+.|.|.
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            3445555555442221 0112345677888888776 3333  5777888888888888886666555556778888888


Q ss_pred             CCcccccC-CcCCCCCCCCCEEEcccCcccccC---CccccCCCCCCEEEccc
Q 003931          135 TNKFSGPI-PGDIGSMSNLQLVELFNNSFTGQI---PSSLGQLKNLQHLDLRM  183 (785)
Q Consensus       135 ~n~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~---~~~l~~l~~L~~L~l~~  183 (785)
                      +|.+.... -.-+..|++|++|.+-+|.....-   -..+..+++|+.||+..
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            87766321 123556777777777777665321   12355666677666654

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=97.79  E-value=1.1e-05  Score=81.98  Aligned_cols=83  Identities=22%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+..+...+.++||||||++++|++||+.|.+-.   .+............+.....  .   ....+.++...|++.+|
T Consensus       170 E~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~li~~~l~~~p  244 (264)
T cd06623         170 ERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAE--E---FSPEFRDFISACLQKDP  244 (264)
T ss_pred             hhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcc--c---CCHHHHHHHHHHccCCh
Confidence            4444446788999999999999999999996422   11110000001111111110  0   11234456667999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.++++
T Consensus       245 ~~R~~~~~ll~  255 (264)
T cd06623         245 KKRPSAAELLQ  255 (264)
T ss_pred             hhCCCHHHHHh
Confidence            99999999976

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=97.78  E-value=1.1e-05  Score=83.34  Aligned_cols=83  Identities=17%  Similarity=0.279  Sum_probs=48.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC-ccccccccc----------CCCCCCCchh---HHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG-ELFLKDVLD----------QRLPPPTGQL---AEA  731 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~-~~~~~~~~d----------~~l~~~~~~~---~~~  731 (785)
                      ...+.++|||||||++.|++||+.|..          +..+... .....+..+          +.........   ...
T Consensus       176 ~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (286)
T cd07846         176 TKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKL  255 (286)
T ss_pred             cccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCc
Confidence            346789999999999999999998753          1111000 000011111          1110000000   001


Q ss_pred             HHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          732 VVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ...+.++...|.+.+|++||+|.+|++
T Consensus       256 ~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         256 SGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             CHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            234567888999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=97.78  E-value=1.2e-05  Score=82.88  Aligned_cols=83  Identities=18%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhh----------hccC---cc-----cccccccCCCCCCCchhHH-----HH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELIT----------SLSG---EL-----FLKDVLDQRLPPPTGQLAE-----AV  732 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~----------~~~~---~~-----~~~~~~d~~l~~~~~~~~~-----~~  732 (785)
                      ...+.++|||||||++.|++||+.|.....          +...   +.     ...+.++..+.........     .-
T Consensus       174 ~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T cd07830         174 TSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNAS  253 (283)
T ss_pred             cCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCC
Confidence            346789999999999999999997753110          0000   00     0011111111100000000     11


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|.+.+|++||++.||+.
T Consensus       254 ~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         254 PEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             HHHHHHHHHhcccCcccCCCHHHHhh
Confidence            34668899999999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=97.78  E-value=1e-05  Score=83.21  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=46.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||+++|++||+.|..-...............+.+..+. ....   .+.++...|.+.+|.+||+|.+|
T Consensus       184 ~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~Rp~~~~i  259 (282)
T cd06643         184 PYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPS-RWSS---EFKDFLKKCLEKNVDARWTTTQL  259 (282)
T ss_pred             CCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCcc-ccCH---HHHHHHHHHccCChhhCcCHHHH
Confidence            4567999999999999999999995411110000000000011111110 1111   23466779999999999999988


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       260 l~  261 (282)
T cd06643         260 LQ  261 (282)
T ss_pred             hc
Confidence            54

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.78  E-value=5.1e-06  Score=92.21  Aligned_cols=80  Identities=25%  Similarity=0.360  Sum_probs=50.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc---hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+-.....+.|+|||||||++.|++||+.|.+   ....+..  ......++ +..   ..   -..+.++.-.|.+.+
T Consensus       214 PE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~--~~~~~~~~-~~~---~~---~~~l~~li~~~L~~d  284 (496)
T PTZ00283        214 PEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHK--TLAGRYDP-LPP---SI---SPEMQEIVTALLSSD  284 (496)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH--HhcCCCCC-CCC---CC---CHHHHHHHHHHcccC
Confidence            355455567899999999999999999999964   1111100  00000111 100   11   122446677899999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||++.+|++
T Consensus       285 P~~RPs~~ell~  296 (496)
T PTZ00283        285 PKRRPSSSKLLN  296 (496)
T ss_pred             hhhCcCHHHHHh
Confidence            999999999875

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=97.77  E-value=8.7e-06  Score=83.26  Aligned_cols=75  Identities=24%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhh----ccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITS----LSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~----~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      .+.++|||||||++.|+++|+.|.+....    ... .......+++....      +.-..+.++...|+..+|++||+
T Consensus       189 ~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~p~~Rps  262 (272)
T cd06629         189 YSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSM------NLSPVALDFLNACFTINPDNRPT  262 (272)
T ss_pred             CCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccc------cCCHHHHHHHHHHhcCChhhCCC
Confidence            67899999999999999999999641100    000 00000111111100      01123445567899999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      |.||++
T Consensus       263 ~~~il~  268 (272)
T cd06629         263 ARELLQ  268 (272)
T ss_pred             HHHHhh
Confidence            999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=97.77  E-value=1.4e-05  Score=84.35  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=27.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.|++||+.|..
T Consensus       171 PE~~~~~~~~~~~DiwslG~il~el~tg~~p~~  203 (331)
T cd06649         171 PERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP  203 (331)
T ss_pred             HhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            355555667889999999999999999999963

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=97.77  E-value=9.4e-06  Score=85.51  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=23.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.|++||+.|.+
T Consensus       186 ~~~~~~DiwslG~il~el~~g~~pf~  211 (327)
T cd08227         186 GYDAKSDIYSVGITACELANGHVPFK  211 (327)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            46789999999999999999999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=97.76  E-value=1.1e-05  Score=83.40  Aligned_cols=88  Identities=15%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---ccccc------ccccCCCCCCCchhH-H
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELFLK------DVLDQRLPPPTGQLA-E  730 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~~~------~~~d~~l~~~~~~~~-~  730 (785)
                      |.-.....+.++|||||||++.|++||+.|..          ++.....   +.+..      ..+++.-........ .
T Consensus       179 E~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
T cd07862         179 EVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTD  258 (290)
T ss_pred             HHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccC
Confidence            44344556789999999999999999998853          1111110   01111      111111100000000 0


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          731 AVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       731 ~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .-..+.++...|.+.+|++||++.|+++
T Consensus       259 ~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         259 IDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             CCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            0012346788999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.76  E-value=1.2e-05  Score=86.08  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=57.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhC-CCCCchhhhccC-cccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMG-RHPGELITSLSG-ELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltg-k~p~~~~~~~~~-~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      |.-...+.+.++|||+|||-+.||+|+ ..|     |+-. .-.+.+-+|.  +|..    ...|-..+++++..|++..
T Consensus       285 EsLrh~kFShaSDvWmyGVTiWEMFtyGEeP-----W~G~~g~qIL~~iD~~erLpR----Pk~csedIY~imk~cWah~  355 (1039)
T KOG0199|consen  285 ESLRHRKFSHASDVWMYGVTIWEMFTYGEEP-----WVGCRGIQILKNIDAGERLPR----PKYCSEDIYQIMKNCWAHN  355 (1039)
T ss_pred             hHhccccccccchhhhhhhhHHhhhccCCCC-----CCCCCHHHHHHhccccccCCC----CCCChHHHHHHHHHhccCC
Confidence            444567889999999999999999995 555     3322 1123344442  2222    2245567788999999999


Q ss_pred             CCCCCChHHHHHHH
Q 003931          747 PDTRPSMRFVAQEL  760 (785)
Q Consensus       747 p~~Rp~m~~vv~~l  760 (785)
                      |++||+..++++++
T Consensus       356 paDRptFsair~~~  369 (1039)
T KOG0199|consen  356 PADRPTFSAIREDL  369 (1039)
T ss_pred             ccccccHHHHHHhH
Confidence            99999999998654

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=97.76  E-value=1.3e-05  Score=81.51  Aligned_cols=82  Identities=22%  Similarity=0.401  Sum_probs=49.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccc--cccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFL--KDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+-.....+.++|||||||++.|++||+.|..-..........  .+...+.+...   ..   ..+..+...|.+.+|+
T Consensus       178 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~i~~~l~~~p~  251 (265)
T cd06631         178 EVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDS---FS---AAAIDFVTSCLTRDQH  251 (265)
T ss_pred             hhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCC---CC---HHHHHHHHHHhcCCcc
Confidence            4434455678999999999999999999996411111000000  00111222111   11   1234567789999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||+|.||.+
T Consensus       252 ~Rp~~~~~l~  261 (265)
T cd06631         252 ERPSALQLLR  261 (265)
T ss_pred             cCCCHHHHhc
Confidence            9999998853

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=97.76  E-value=2.1e-05  Score=82.02  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=26.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      |+..+...+.++|||||||+++|++||+.|..
T Consensus       168 E~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~  199 (308)
T cd06615         168 ERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIP  199 (308)
T ss_pred             hHhcCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence            44444557789999999999999999999853

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=97.75  E-value=1.3e-05  Score=83.25  Aligned_cols=86  Identities=14%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.|+|||||||+++|++||+.|.....-............+...... ...   ..+.++.-.|.+.+|++
T Consensus       186 PE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~l~~~i~~~l~~~P~~  261 (297)
T cd06659         186 PEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAH-KIS---PVLRDFLERMLTREPQE  261 (297)
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccC-CCC---HHHHHHHHHHhcCCccc
Confidence            35545556788999999999999999999995310000000000000000000000 001   12345667899999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||++.+|++.
T Consensus       262 Rps~~~ll~~  271 (297)
T cd06659         262 RATAQELLDH  271 (297)
T ss_pred             CcCHHHHhhC
Confidence            9999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=97.75  E-value=1e-05  Score=83.44  Aligned_cols=84  Identities=21%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||+++|++||+.|..-......   ...+......... .....-..+.++.-.|.+.+|.+|
T Consensus       186 E~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~R  261 (286)
T cd06614         186 EVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRA---LFLITTKGIPPLK-NPEKWSPEFKDFLNKCLVKDPEKR  261 (286)
T ss_pred             hHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHhcCCCCCc-chhhCCHHHHHHHHHHhccChhhC
Confidence            333344567899999999999999999998531111000   0000000000000 000011234567789999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |+|.+|++
T Consensus       262 pt~~~il~  269 (286)
T cd06614         262 PSAEELLQ  269 (286)
T ss_pred             cCHHHHhh
Confidence            99999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=97.75  E-value=1e-05  Score=83.22  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-..-............+.....     ..-..+.++.-.|.+.+|++||+..|
T Consensus       201 ~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~cl~~~p~~Rp~~~e  275 (282)
T cd06636         201 ATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSK-----KWSKKFIDFIEGCLVKNYLSRPSTEQ  275 (282)
T ss_pred             cCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCccc-----ccCHHHHHHHHHHhCCChhhCcCHHH
Confidence            3567899999999999999999999531100000000000011111100     01123556677999999999999998


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      +++
T Consensus       276 ll~  278 (282)
T cd06636         276 LLK  278 (282)
T ss_pred             Hhc
Confidence            853

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=97.75  E-value=1e-05  Score=83.93  Aligned_cols=84  Identities=20%  Similarity=0.272  Sum_probs=49.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|.+-..-...........-+.+..+. ..   -..+.++...|...+|++|
T Consensus       185 E~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~li~~~l~~dp~~R  260 (296)
T cd06655         185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPE-KL---SPIFRDFLNRCLEMDVEKR  260 (296)
T ss_pred             chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcc-cC---CHHHHHHHHHHhhcChhhC
Confidence            3333455678999999999999999999996411100000000000000111110 01   1123456678999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |+|.+|++
T Consensus       261 pt~~~il~  268 (296)
T cd06655         261 GSAKELLQ  268 (296)
T ss_pred             CCHHHHhh
Confidence            99999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=97.73  E-value=7.8e-06  Score=87.14  Aligned_cols=75  Identities=21%  Similarity=0.136  Sum_probs=44.7

Q ss_pred             cccccceeeeehhhhhhhhCCCCCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      .+.++|||||||+++|+++|+.|...   ..|.........-..+....   ...   ..+.++.-.|.+.+|++||++.
T Consensus       250 ~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~~P~~Rpt~~  323 (353)
T PLN00034        250 DGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPA---TAS---REFRHFISCCLQREPAKRWSAM  323 (353)
T ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCC---ccC---HHHHHHHHHHccCChhhCcCHH
Confidence            34689999999999999999999541   11100000000000001100   111   1234566789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ||++
T Consensus       324 ell~  327 (353)
T PLN00034        324 QLLQ  327 (353)
T ss_pred             HHhc
Confidence            9976

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=97.73  E-value=1.2e-05  Score=83.97  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-............-..+....  ..   .-..+.++.-.|++.+|++||++.+
T Consensus       189 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~li~~cl~~~P~~Rp~~~~  263 (308)
T cd06634         189 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQS--GH---WSEYFRNFVDSCLQKIPQDRPTSEV  263 (308)
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCc--cc---ccHHHHHHHHHHhhCCcccCCCHHH
Confidence            456789999999999999999999953110000000000000011100  00   1122445677899999999999999


Q ss_pred             HHHH
Q 003931          756 VAQE  759 (785)
Q Consensus       756 vv~~  759 (785)
                      |++.
T Consensus       264 ll~~  267 (308)
T cd06634         264 LLKH  267 (308)
T ss_pred             HhhC
Confidence            9764

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=97.73  E-value=9.5e-06  Score=85.05  Aligned_cols=81  Identities=20%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-...   ......+.+......  .....-..+.++.-.|.+.+|++||+|.|
T Consensus       199 ~~~~~~~Dv~slGvil~el~~g~~p~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  273 (317)
T cd06635         199 GQYDGKVDVWSLGITCIELAERKPPLFNMNA---MSALYHIAQNESPTL--QSNEWSDYFRNFVDSCLQKIPQDRPTSEE  273 (317)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCCCccH---HHHHHHHHhccCCCC--CCccccHHHHHHHHHHccCCcccCcCHHH
Confidence            4578899999999999999999998421000   000000111000000  00001122456677999999999999999


Q ss_pred             HHHHHH
Q 003931          756 VAQELS  761 (785)
Q Consensus       756 vv~~l~  761 (785)
                      |.+..-
T Consensus       274 il~~~~  279 (317)
T cd06635         274 LLKHMF  279 (317)
T ss_pred             HHhChh
Confidence            987543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.73  E-value=8.8e-06  Score=96.30  Aligned_cols=81  Identities=20%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||+++||++|+.|.+-....... .......+...       ........++..|.+.+|.+
T Consensus       184 PE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~P~~  255 (793)
T PLN00181        184 PEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSS-LRHRVLPPQIL-------LNWPKEASFCLWLLHPEPSC  255 (793)
T ss_pred             hhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHH-HHHhhcChhhh-------hcCHHHHHHHHHhCCCChhh
Confidence            45555667789999999999999999999885411100000 00011111110       11222345667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|.||++
T Consensus       256 Rps~~eil~  264 (793)
T PLN00181        256 RPSMSELLQ  264 (793)
T ss_pred             CcChHHHhh
Confidence            999999975

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=97.73  E-value=1e-05  Score=80.96  Aligned_cols=85  Identities=19%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc-cCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL-DQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||+++.|++||+.|.+...   ......+.+ ........ .....-..+.+++..|...+|+
T Consensus       155 pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~p~  230 (244)
T smart00220      155 PEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDD---QLLELFKKIGKPKPPFPP-PEWKISPEAKDLIRKLLVKDPE  230 (244)
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC---cHHHHHHHHhccCCCCcc-ccccCCHHHHHHHHHHccCCch
Confidence            344445677889999999999999999998853210   000000111 01100000 0000113456788899999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||+|.+|++
T Consensus       231 ~Rp~~~~~~~  240 (244)
T smart00220      231 KRLTAEEALQ  240 (244)
T ss_pred             hccCHHHHhh
Confidence            9999999975

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=97.73  E-value=8.2e-06  Score=84.62  Aligned_cols=80  Identities=19%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||++.|++||+.|......  .......+++....... ........+.++...|.+.+|++||+|.++
T Consensus       194 ~~~~~~Di~slG~il~el~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i  270 (296)
T cd06618         194 KYDIRADVWSLGISLVELATGQFPYKNCKT--EFEVLTKILQEEPPSLP-PNEGFSPDFCSFVDLCLTKDHRKRPKYREL  270 (296)
T ss_pred             ccccchhHHHHHHHHHHHHhCCCCCCcchh--HHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence            367899999999999999999999532100  00001111111110000 000011234566789999999999999999


Q ss_pred             HHH
Q 003931          757 AQE  759 (785)
Q Consensus       757 v~~  759 (785)
                      ++.
T Consensus       271 l~~  273 (296)
T cd06618         271 LQH  273 (296)
T ss_pred             hcC
Confidence            754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=97.72  E-value=1e-05  Score=83.33  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccCcc---c--ccccccC--CCC-CCCchhHH----HHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGEL---F--LKDVLDQ--RLP-PPTGQLAE----AVVL  734 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~~---~--~~~~~d~--~l~-~~~~~~~~----~~~~  734 (785)
                      ..+.++|||||||++.|++||+.|..          +.++.....   +  ....-+.  ... ........    .-..
T Consensus       176 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (283)
T cd07835         176 QYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDED  255 (283)
T ss_pred             ccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHH
Confidence            34678999999999999999998842          111110000   0  0000000  000 00000000    0124


Q ss_pred             HHHHHhhcCCCCCCCCCChHHHHH
Q 003931          735 TINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       735 ~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++...|.+.+|++||+|.||++
T Consensus       256 ~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         256 GLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             HHHHHHHHhcCChhhCcCHHHHhc
Confidence            557889999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=97.72  E-value=2e-05  Score=79.72  Aligned_cols=82  Identities=18%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++||||||++++|+++|+.|.+-..-.   .....+.......   .....-..+..+...|...+|++|
T Consensus       171 e~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~R  244 (256)
T cd08530         171 EVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ---DLRYKVQRGKYPP---IPPIYSQDLQNFIRSMLQVKPKLR  244 (256)
T ss_pred             HHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHhcCCCCC---CchhhCHHHHHHHHHHcCCCcccC
Confidence            4444556778999999999999999999995411100   0000000001100   000112235677889999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.||++
T Consensus       245 p~~~~~l~  252 (256)
T cd08530         245 PNCDKILA  252 (256)
T ss_pred             CCHHHHhc
Confidence            99999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.71  E-value=9.8e-06  Score=82.34  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             cccccccceeeeehhhhhhh-hCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVM-MGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLEll-tgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||++.|++ +|+.|..-..  ..+  ...............    ...+.++.-.|.+.+|++||+|.
T Consensus       184 ~~~~~~~DiwslG~~l~el~~~~~~p~~~~~--~~~--~~~~~~~~~~~~~~~----~~~~~~li~~cl~~dp~~Rp~~~  255 (262)
T cd05077         184 KNLSIAADKWSFGTTLWEICYNGEIPLKDKT--LAE--KERFYEGQCMLVTPS----CKELADLMTHCMNYDPNQRPFFR  255 (262)
T ss_pred             CCCCchhHHHHHHHHHHHHHhCCCCCCCCcc--hhH--HHHHHhcCccCCCCC----hHHHHHHHHHHcCCChhhCcCHH
Confidence            44678999999999999998 5777642100  000  000000000000011    12345677899999999999999


Q ss_pred             HHHHHH
Q 003931          755 FVAQEL  760 (785)
Q Consensus       755 ~vv~~l  760 (785)
                      ++++.+
T Consensus       256 ~il~~~  261 (262)
T cd05077         256 AIMRDI  261 (262)
T ss_pred             HHHHhc
Confidence            998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=97.71  E-value=1e-05  Score=82.49  Aligned_cols=79  Identities=16%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCccc-ccccc-cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF-LKDVL-DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~-~~~~~-d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ...+.++|||||||++.|++||+.|..-......... ..... .+...... .   .-..+.++.-.|.+.+|++||++
T Consensus       184 ~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~li~~~l~~~P~~Rp~~  259 (267)
T cd06646         184 GGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKT-K---WSSTFHNFVKISLTKNPKKRPTA  259 (267)
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCcccc-c---cCHHHHHHHHHHhhCChhhCcCH
Confidence            3457799999999999999999998531111100000 00000 11111000 0   11234566778999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .++++
T Consensus       260 ~~il~  264 (267)
T cd06646         260 ERLLT  264 (267)
T ss_pred             HHHhc
Confidence            99875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.70  E-value=7.6e-06  Score=86.75  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++|||||||++.|++||+.|.
T Consensus       183 ~~~~~~~DvwSlGvvl~el~tg~~pf  208 (338)
T cd07859         183 SKYTPAIDIWSIGCIFAEVLTGKPLF  208 (338)
T ss_pred             cccCchhHHHHHHHHHHHHHcCCCCC
Confidence            45678999999999999999999885

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=97.69  E-value=1e-05  Score=83.46  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             hhhhhc-ccccccceeeeehhhhhhhhCCCCCch----------hhhccC-ccccccc--ccCCCC-----CCC-chhH-
Q 003931          671 ELAVTM-RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG-ELFLKDV--LDQRLP-----PPT-GQLA-  729 (785)
Q Consensus       671 e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~-~~~~~~~--~d~~l~-----~~~-~~~~-  729 (785)
                      |+..+. ..+.|+||||||+++.|++||+.|..-          ...... .....+.  .++...     ... .... 
T Consensus       171 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T cd07833         171 ELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLE  250 (288)
T ss_pred             chhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHH
Confidence            443344 567899999999999999999987530          000000 0000000  001000     000 0000 


Q ss_pred             -----HHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          730 -----EAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       730 -----~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                           ..-..+.++...|.+.+|++||+|.+|++
T Consensus       251 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         251 RRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             HhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence                 01234667888999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=97.68  E-value=1.9e-05  Score=81.77  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      .+.++|||||||++.|++||+.|..-...............+....+.    .....+.++...|.+.+|++||++.||+
T Consensus       192 ~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li~~~l~~~p~~Rp~~~~il  267 (292)
T cd06644         192 YDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPS----KWSMEFRDFLKTALDKHPETRPSAAQLL  267 (292)
T ss_pred             CCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCc----ccCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence            467899999999999999999995311100000000000111111100    1112345667789999999999999986


Q ss_pred             H
Q 003931          758 Q  758 (785)
Q Consensus       758 ~  758 (785)
                      +
T Consensus       268 ~  268 (292)
T cd06644         268 E  268 (292)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=97.68  E-value=1e-05  Score=82.96  Aligned_cols=88  Identities=15%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchh-hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI-TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.++|||||||++.|++||+.|.... ..+.....................   -..+.++.-.|.+.+|+
T Consensus       163 PE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~L~~~P~  239 (277)
T cd05607         163 PEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNF---TEESKDICRLFLAKKPE  239 (277)
T ss_pred             HHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccccccC---CHHHHHHHHHHhccCHh
Confidence            35555556789999999999999999999995311 000000000111111111000001   11245667789999999


Q ss_pred             CCCChHHHHHHH
Q 003931          749 TRPSMRFVAQEL  760 (785)
Q Consensus       749 ~Rp~m~~vv~~l  760 (785)
                      +||+++|+++..
T Consensus       240 ~R~~~~~~~~~~  251 (277)
T cd05607         240 DRLGSREKNDDP  251 (277)
T ss_pred             hCCCCccchhhh
Confidence            999998876544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=97.67  E-value=1.7e-05  Score=80.30  Aligned_cols=78  Identities=29%  Similarity=0.494  Sum_probs=51.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+......+.++||||+|+++.|+++ |+.|.+      +...+....        ...... .   .-..+.++...|.
T Consensus       174 e~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~--------~~~~~~-~---~~~~~~~~i~~~l  241 (258)
T smart00219      174 ESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGY--------RLPKPE-N---CPPEIYKLMLQCW  241 (258)
T ss_pred             HHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCC--------CCCCCC-c---CCHHHHHHHHHHC
Confidence            44445667899999999999999999 677643      111111110        000000 1   1123556788999


Q ss_pred             CCCCCCCCChHHHHHHH
Q 003931          744 STTPDTRPSMRFVAQEL  760 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l  760 (785)
                      ..+|++||++.|+.++|
T Consensus       242 ~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      242 AEDPEDRPTFSELVEIL  258 (258)
T ss_pred             cCChhhCcCHHHHHhhC
Confidence            99999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=97.66  E-value=3e-06  Score=85.99  Aligned_cols=89  Identities=24%  Similarity=0.329  Sum_probs=53.2

Q ss_pred             hhhhh-hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAV-TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~-~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+.. ....+.++||||+|+++.|++||+.|..-..+............+.+.............+.++...|.+.+|+
T Consensus       167 PE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  246 (260)
T PF00069_consen  167 PEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPE  246 (260)
T ss_dssp             HHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGG
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChh
Confidence            35554 67889999999999999999999999642111100000111111100000000000013456778889999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||+|.++++
T Consensus       247 ~R~~~~~l~~  256 (260)
T PF00069_consen  247 QRPSAEELLK  256 (260)
T ss_dssp             GSTTHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999874

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=97.65  E-value=1.8e-05  Score=80.54  Aligned_cols=77  Identities=19%  Similarity=0.291  Sum_probs=46.1

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhh-hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELIT-SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      .+.++||||||+++.|++||+.|.+-.. .............+.+.... .   .-..+.++...|++.+|++||+|.|+
T Consensus       183 ~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~li~~~l~~~p~~R~~~~~i  258 (264)
T cd06626         183 HGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSL-Q---LSPEGKDFLDRCLESDPKKRPTASEL  258 (264)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCccc-c---cCHHHHHHHHHHccCCcccCCCHHHH
Confidence            6789999999999999999999953110 00000000111111221110 0   01223456679999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      +.
T Consensus       259 ~~  260 (264)
T cd06626         259 LQ  260 (264)
T ss_pred             hc
Confidence            53

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.65  E-value=4.3e-05  Score=52.40  Aligned_cols=39  Identities=26%  Similarity=0.390  Sum_probs=24.9

Q ss_pred             CCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCC
Q 003931            5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETP   44 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~   44 (785)
                      ++|++|++++|+|+.+ +..+.++++|++|++++|.|+++
T Consensus         1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCC
Confidence            4677777777777743 33567777777777777776644

...

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=97.64  E-value=2e-05  Score=81.04  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-..-...-........+.+..+. ..   -..+.++...|.+.+|++||++.+
T Consensus       183 ~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~li~~~l~~~p~~Rps~~~  258 (280)
T cd06611         183 NPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPS-KW---SSSFNDFLKSCLVKDPDDRPTAAE  258 (280)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcc-cC---CHHHHHHHHHHhccChhhCcCHHH
Confidence            34577999999999999999999995311000000000000001111110 00   112345667899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      |++
T Consensus       259 il~  261 (280)
T cd06611         259 LLK  261 (280)
T ss_pred             Hhc
Confidence            865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=97.64  E-value=4e-05  Score=80.81  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=22.8

Q ss_pred             cccccceeeeehhhhhhhhCCCCCc
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      .+.++|||||||++.|+++|+.|..
T Consensus       187 ~~~~~DiwslG~~l~el~~g~~p~~  211 (328)
T cd08226         187 YNVKSDIYSVGITACELATGRVPFQ  211 (328)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCC
Confidence            5789999999999999999999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=97.64  E-value=4e-05  Score=78.49  Aligned_cols=80  Identities=26%  Similarity=0.400  Sum_probs=51.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |.......+.++|||||||++.|+++ |+.|..      ++...... ... .   ....   .   .-..+.++...|.
T Consensus       188 E~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~-~~~-~---~~~~---~---~~~~l~~~i~~~l  256 (275)
T cd05046         188 EAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAG-KLE-L---PVPE---G---CPSRLYKLMTRCW  256 (275)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcC-CcC-C---CCCC---C---CCHHHHHHHHHHc
Confidence            43344456788999999999999999 666642      11111100 000 0   0000   0   1124567889999


Q ss_pred             CCCCCCCCChHHHHHHHH
Q 003931          744 STTPDTRPSMRFVAQELS  761 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~  761 (785)
                      +.+|++||++.|++++|.
T Consensus       257 ~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         257 AVNPKDRPSFSELVSALG  274 (275)
T ss_pred             CCCcccCCCHHHHHHHhc
Confidence            999999999999998875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=97.63  E-value=2.4e-05  Score=80.42  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc------hhhhccC-----ccc------ccccccCCCCCCCc-hh----HHHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSG-----ELF------LKDVLDQRLPPPTG-QL----AEAVV  733 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~-----~~~------~~~~~d~~l~~~~~-~~----~~~~~  733 (785)
                      ...+.++|||||||+++|++||+.|..      .+.+...     ...      .....+........ ..    ...-.
T Consensus       174 ~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (282)
T cd07831         174 GYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASA  253 (282)
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccH
Confidence            456789999999999999999998753      1111110     000      00000100000000 00    01124


Q ss_pred             HHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          734 LTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       734 ~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .+.++...|.+.+|++||+|.||++
T Consensus       254 ~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         254 EGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             HHHHHHHHHhccCcccccCHHHHhh
Confidence            4667888999999999999999864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=97.63  E-value=3.2e-05  Score=78.58  Aligned_cols=79  Identities=16%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      .+...+.++|||||||++.|++||+.|..-...... ......-..+.+...      .-..+.++.-.|+..+|++||+
T Consensus       180 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~li~~~l~~~p~~Rpt  253 (263)
T cd06625         180 SGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSH------VSPDARNFLRRTFVENAKKRPS  253 (263)
T ss_pred             ccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCcc------CCHHHHHHHHHHhhcCcccCCC
Confidence            344577899999999999999999999431000000 000000001111110      0112345667899999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      +.|+++
T Consensus       254 ~~~ll~  259 (263)
T cd06625         254 AEELLR  259 (263)
T ss_pred             HHHHhh
Confidence            999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=97.63  E-value=1.2e-05  Score=81.80  Aligned_cols=86  Identities=16%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++||||||+++.|++||+.|.+.....   .....+.......+. .. ..-..+..+.-.|.+.+|++|
T Consensus       171 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~l~~~p~~R  245 (265)
T cd05579         171 EVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPE---EIFQNILNGKIEWPE-DV-EVSDEAIDLISKLLVPDPEKR  245 (265)
T ss_pred             HHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHhcCCcCCCc-cc-cCCHHHHHHHHHHhcCCHhhc
Confidence            4444445678999999999999999999995411100   000000100110000 00 001234566778999999999


Q ss_pred             CChHHHHHHHH
Q 003931          751 PSMRFVAQELS  761 (785)
Q Consensus       751 p~m~~vv~~l~  761 (785)
                      |++.+|.+.|.
T Consensus       246 pt~~~~~~~l~  256 (265)
T cd05579         246 LGAKSIEEIKN  256 (265)
T ss_pred             CCCccHHHHhc
Confidence            99977776664

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=97.63  E-value=1.8e-05  Score=80.14  Aligned_cols=83  Identities=16%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+..+...+.++||||||+++.|+++|+.|.+-..-   .....++...........   .-..+.++...|+..+|++|
T Consensus       171 e~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~R  244 (256)
T cd08221         171 ELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP---LNLVVKIVQGNYTPVVSV---YSSELISLVHSLLQQDPEKR  244 (256)
T ss_pred             hhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHcCCCCCCccc---cCHHHHHHHHHHcccCcccC
Confidence            444445567899999999999999999998531000   000011111111100001   11224456678999999999


Q ss_pred             CChHHHHHH
Q 003931          751 PSMRFVAQE  759 (785)
Q Consensus       751 p~m~~vv~~  759 (785)
                      |++.|+++.
T Consensus       245 ~s~~~ll~~  253 (256)
T cd08221         245 PTADEVLDQ  253 (256)
T ss_pred             CCHHHHhhC
Confidence            999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=97.62  E-value=2.3e-05  Score=79.45  Aligned_cols=82  Identities=21%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|.+-............-..+....      ..-..+.++.-.|+..+|++|
T Consensus       175 e~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~~p~~R  248 (260)
T cd08222         175 EALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPE------TYSRQLNSIMQSMLNKDPSLR  248 (260)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcc------hhcHHHHHHHHHHhcCChhhC
Confidence            44334456778999999999999999999854100000000000001111111      111234556778999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.|+.+
T Consensus       249 p~~~~il~  256 (260)
T cd08222         249 PSAAEILR  256 (260)
T ss_pred             cCHHHHhh
Confidence            99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=97.62  E-value=1.8e-05  Score=81.47  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.8

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++|||||||+++|++||+.|.
T Consensus       178 ~~~~~Dv~slG~il~~l~tg~~p~  201 (284)
T cd07860         178 YSTAVDIWSLGCIFAEMVTRRALF  201 (284)
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCC
Confidence            467899999999999999999884

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=97.62  E-value=5.1e-05  Score=80.10  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=26.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      |+-.....+.++|||||||+++|++||+.|.+
T Consensus       172 E~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  203 (333)
T cd06650         172 ERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIP  203 (333)
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            44444567789999999999999999999964

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=97.61  E-value=1.6e-05  Score=81.72  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=48.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch----------hhhccC--ccccccccc------CCCCCC-Cch----hHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG--ELFLKDVLD------QRLPPP-TGQ----LAEAVV  733 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~--~~~~~~~~d------~~l~~~-~~~----~~~~~~  733 (785)
                      ..+.|+|||||||++.|++||+.|..-          .+.+..  .....+..+      ...... ...    ....-.
T Consensus       175 ~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T cd05118         175 GYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASP  254 (283)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCH
Confidence            568899999999999999999987420          011000  000000000      000000 000    001123


Q ss_pred             HHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          734 LTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       734 ~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .+.++...|.+.+|.+||+|.+++.
T Consensus       255 ~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         255 QALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             HHHHHHHHHhccCcccCcCHHHHhh
Confidence            4668889999999999999999874

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=97.60  E-value=2.1e-05  Score=82.92  Aligned_cols=79  Identities=22%  Similarity=0.361  Sum_probs=46.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cc----cc-cccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-EL----FL-KDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~----~~-~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.+...+.++|||||||++.|++||+.|.+....... ..    .. ..+......-+. .   ....+..+.-.|.
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~-~---~~~~~~~ll~~~L  240 (329)
T cd05618         165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR-S---LSVKAASVLKSFL  240 (329)
T ss_pred             HHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCC-C---CCHHHHHHHHHHh
Confidence            3555555677899999999999999999999642111000 00    00 011111111111 0   1122446677899


Q ss_pred             CCCCCCCCC
Q 003931          744 STTPDTRPS  752 (785)
Q Consensus       744 ~~~p~~Rp~  752 (785)
                      +.+|++||+
T Consensus       241 ~~dP~~R~~  249 (329)
T cd05618         241 NKDPKERLG  249 (329)
T ss_pred             cCCHHHcCC
Confidence            999999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=97.60  E-value=2.2e-05  Score=80.90  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||++.|++||+.|.+-..+.........+.+.........   .-..+..+...|.+.+|++||++.++
T Consensus       183 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~l  259 (286)
T cd06622         183 TYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSG---YSDDAQDFVAKCLNKIPNRRPTYAQL  259 (286)
T ss_pred             CCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcc---cCHHHHHHHHHHcccCcccCCCHHHH
Confidence            357899999999999999999999531111000000111111111000001   11223456678999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      +.
T Consensus       260 ~~  261 (286)
T cd06622         260 LE  261 (286)
T ss_pred             hc
Confidence            76

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=97.60  E-value=1.4e-05  Score=82.47  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch----------hhhccC--ccccccccc----CCCC--CCCchh-H----H-HH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG--ELFLKDVLD----QRLP--PPTGQL-A----E-AV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~--~~~~~~~~d----~~l~--~~~~~~-~----~-~~  732 (785)
                      ..+.++||||||+++.|++||+.|.+-          ......  .....+..+    ....  ...... .    . +-
T Consensus       178 ~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (287)
T cd07840         178 RYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLID  257 (287)
T ss_pred             cCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCC
Confidence            356899999999999999999988531          111000  000000000    0000  000000 0    0 12


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|...+|++||++.+|++
T Consensus       258 ~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         258 PSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            35678899999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=97.59  E-value=3.5e-05  Score=79.74  Aligned_cols=80  Identities=18%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc-cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL-DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ....+.++|||||||++.|++||+.|.+-..-...   ...+. .+.....  .....-..+.++...|.+.+|++||++
T Consensus       189 ~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rp~~  263 (293)
T cd06647         189 RKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA---LYLIATNGTPELQ--NPEKLSAIFRDFLNRCLEMDVEKRGSA  263 (293)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh---eeehhcCCCCCCC--CccccCHHHHHHHHHHccCChhhCcCH
Confidence            34567899999999999999999999641110000   00000 0000000  000001123456778999999999999


Q ss_pred             HHHHHH
Q 003931          754 RFVAQE  759 (785)
Q Consensus       754 ~~vv~~  759 (785)
                      .+++..
T Consensus       264 ~~il~h  269 (293)
T cd06647         264 KELLQH  269 (293)
T ss_pred             HHHhcC
Confidence            999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00035  Score=72.74  Aligned_cols=55  Identities=16%  Similarity=0.065  Sum_probs=26.7

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931           27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus        27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      .+++++.|++++|.++.++  .+  -.+|++|.+++|.--...|..+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3556666666666555543  11  1246666665543223333333  135555555555

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=97.58  E-value=1.7e-05  Score=82.83  Aligned_cols=80  Identities=19%  Similarity=0.237  Sum_probs=46.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc---hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+......+.++|||||||++.|++||+.|..   ......      .+.......+. ....+   +.++...|.+.+|
T Consensus       163 E~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~------~~~~~~~~~~~-~~~~~---~~~li~~~L~~dp  232 (312)
T cd05585         163 ELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYR------KILQEPLRFPD-GFDRD---AKDLLIGLLSRDP  232 (312)
T ss_pred             HHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHH------HHHcCCCCCCC-cCCHH---HHHHHHHHcCCCH
Confidence            44445567889999999999999999999953   111110      11111110000 11112   3355678999999


Q ss_pred             CCCCChHHHHHHH
Q 003931          748 DTRPSMRFVAQEL  760 (785)
Q Consensus       748 ~~Rp~m~~vv~~l  760 (785)
                      ++||+..++.+.+
T Consensus       233 ~~R~~~~~~~e~l  245 (312)
T cd05585         233 TRRLGYNGAQEIK  245 (312)
T ss_pred             HHcCCCCCHHHHH
Confidence            9998754443333

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=97.58  E-value=2.2e-05  Score=82.29  Aligned_cols=88  Identities=14%  Similarity=0.183  Sum_probs=54.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||+++|+++|+.|..-...   .....++.+.....+...  ..-..+.++.-.|++.+|++
T Consensus       201 PE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p~~  275 (316)
T cd05574         201 PEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR---DETFSNILKKEVTFPGSP--PVSSSARDLIRKLLVKDPSK  275 (316)
T ss_pred             HHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch---HHHHHHHhcCCccCCCcc--ccCHHHHHHHHHHccCCHhH
Confidence            4555566678999999999999999999999531111   111112222221111000  01123556778899999999


Q ss_pred             CCChHHHHHHHHh
Q 003931          750 RPSMRFVAQELSA  762 (785)
Q Consensus       750 Rp~m~~vv~~l~~  762 (785)
                      ||++..+++++..
T Consensus       276 R~s~~~~~~~ll~  288 (316)
T cd05574         276 RLGSKRGAAEIKQ  288 (316)
T ss_pred             CCCchhhHHHHHc
Confidence            9996666655544

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=97.57  E-value=5.6e-05  Score=77.94  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.....+.++|||||||++.|++||+.|.
T Consensus       170 PE~~~~~~~~~~~DiwslGvil~el~~g~~pf  201 (287)
T cd07848         170 PELLLGAPYGKAVDMWSVGCILGELSDGQPLF  201 (287)
T ss_pred             cHHHcCCCCCCchhHHhHHHHHHHHHhCCCCC
Confidence            34444556788999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=97.57  E-value=2.1e-05  Score=80.31  Aligned_cols=78  Identities=22%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             cccccccceeeeehhhhhhhh-CCCCCchh------hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMM-GRHPGELI------TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLEllt-gk~p~~~~------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      ...+.++|||||||+++|++| |+.|..-.      ..+... ......++.+....   ....   .++...|. .+|+
T Consensus       184 ~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~---~~~~~~~~-~dp~  255 (269)
T cd05042         184 KDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVRE-QDIKLPKPQLDLKY---SDRW---YEVMQFCW-LDPE  255 (269)
T ss_pred             cccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhc-cCccCCCCcccccC---CHHH---HHHHHHHh-cCcc
Confidence            355789999999999999999 67674210      110000 01112222221111   1112   23344565 4999


Q ss_pred             CCCChHHHHHHHH
Q 003931          749 TRPSMRFVAQELS  761 (785)
Q Consensus       749 ~Rp~m~~vv~~l~  761 (785)
                      +||++.||.+.|.
T Consensus       256 ~Rpt~~~v~~~l~  268 (269)
T cd05042         256 TRPTAEEVHELLT  268 (269)
T ss_pred             cccCHHHHHHHhc
Confidence            9999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=97.56  E-value=2.5e-05  Score=80.49  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhcc-CcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLS-GELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.++|||||||++.|++||+.|.+-..... .+.....+.+...... ....   ..+..+.-.|.+.+|+
T Consensus       170 PE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~s---~~~~~li~~~l~~~P~  245 (285)
T cd05631         170 PEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYS-EKFS---EDAKSICRMLLTKNPK  245 (285)
T ss_pred             HhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCC-ccCC---HHHHHHHHHHhhcCHH
Confidence            354455667899999999999999999999953110000 0000000111111000 0111   1244667789999999


Q ss_pred             CCCC-----hHHHHH
Q 003931          749 TRPS-----MRFVAQ  758 (785)
Q Consensus       749 ~Rp~-----m~~vv~  758 (785)
                      +||+     +.++.+
T Consensus       246 ~R~~~~~~~~~~~~~  260 (285)
T cd05631         246 ERLGCRGNGAAGVKQ  260 (285)
T ss_pred             HhcCCCCCCHHHHhc
Confidence            9997     677654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.56  E-value=2e-05  Score=90.87  Aligned_cols=86  Identities=21%  Similarity=0.299  Sum_probs=52.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+..+...+.++|||||||+++|++||+.|.+-...   ......+++..+..+.. ....-..+.++...|...+|++
T Consensus       549 PE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~---~~~~~~il~~~~~~p~~-~~~~~~~~~~~l~~lL~~dP~~  624 (669)
T cd05610         549 PELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETP---QQVFQNILNRDIPWPEG-EEKLSVNAQNAIEILLTMDPTK  624 (669)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhcCCCCCcc-cccCCHHHHHHHHHHcccChhH
Confidence            4555566678999999999999999999999531100   01111222222211100 0011122344556689999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||+|.||++.
T Consensus       625 R~ta~e~l~h  634 (669)
T cd05610         625 RAGLKELKQH  634 (669)
T ss_pred             CcCHHHHHhC
Confidence            9999999774

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=97.56  E-value=3.4e-05  Score=82.29  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=26.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.....+.++|||||||++.||+||+.|.
T Consensus       187 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf  218 (355)
T cd07874         187 PEVILGMGYKENVDIWSVGCIMGEMVRHKILF  218 (355)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            35444556788999999999999999999885

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=97.56  E-value=1.6e-05  Score=88.31  Aligned_cols=83  Identities=20%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.||+||+.|.+-...   ......+............   -..+.++...|.+.+|++
T Consensus       240 PE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~---~~~~~~~~~~~~~~~~~~~---s~~~~~li~~~L~~dP~~  313 (478)
T PTZ00267        240 PELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ---REIMQQVLYGKYDPFPCPV---SSGMKALLDPLLSKNPAL  313 (478)
T ss_pred             HhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCCccC---CHHHHHHHHHHhccChhh
Confidence            3554556778999999999999999999999531100   0000111111110000011   122446677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.+++.
T Consensus       314 Rps~~~~l~  322 (478)
T PTZ00267        314 RPTTQQLLH  322 (478)
T ss_pred             CcCHHHHHh
Confidence            999999864

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=97.54  E-value=6e-05  Score=79.64  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhh---ccCcccccccc-cCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITS---LSGELFLKDVL-DQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~---~~~~~~~~~~~-d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+......+.++|||||||++.||+||+.|.+-...   ...-....+.+ .+..........+++.   ++...|...
T Consensus       167 PE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~---~li~~~l~~  243 (333)
T cd05600         167 PEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAW---DLITKLIND  243 (333)
T ss_pred             hhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHH---HHHHHHhhC
Confidence            3555555778999999999999999999999541100   00000000111 1111000001112233   444568889


Q ss_pred             CCCCCCChHHHHHH
Q 003931          746 TPDTRPSMRFVAQE  759 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~  759 (785)
                      .|++||++.+|.+.
T Consensus       244 ~~~rr~s~~~ll~h  257 (333)
T cd05600         244 PSRRFGSLEDIKNH  257 (333)
T ss_pred             hhhhcCCHHHHHhC
Confidence            99999999999753

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=97.54  E-value=3.4e-05  Score=77.84  Aligned_cols=82  Identities=16%  Similarity=0.310  Sum_probs=49.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++||||+|+++.|++||+.|.+-...............+....   ..   ...+..+...|...+|++|
T Consensus       169 e~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~i~~~l~~~p~~R  242 (254)
T cd06627         169 EVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPE---GI---SPELKDFLMQCFQKDPNLR  242 (254)
T ss_pred             hhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCCC---CC---CHHHHHHHHHHHhCChhhC
Confidence            44444456789999999999999999999854111100000000000011111   11   1233466788999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |+|.||+.
T Consensus       243 ~~~~~~l~  250 (254)
T cd06627         243 PTAKQLLK  250 (254)
T ss_pred             cCHHHHhc
Confidence            99999863

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=97.54  E-value=3e-05  Score=81.15  Aligned_cols=81  Identities=17%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             cccccceeeeehhhhhhhhCCCCCch-------hhhccCc--------------ccccc----cccCCCCCCC--chhHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGEL-------ITSLSGE--------------LFLKD----VLDQRLPPPT--GQLAE  730 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~-------~~~~~~~--------------~~~~~----~~d~~l~~~~--~~~~~  730 (785)
                      .+.++|||||||++.|++||+.|...       .+.....              ....+    ..++......  .....
T Consensus       187 ~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (314)
T cd08216         187 YNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRT  266 (314)
T ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhH
Confidence            56789999999999999999999541       1111000              00000    1111110000  00000


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          731 AVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       731 ~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .-....++...|...+|++||++.++++
T Consensus       267 ~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         267 FSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             HHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence            1123556788899999999999999876

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=97.53  E-value=5.7e-05  Score=80.61  Aligned_cols=86  Identities=20%  Similarity=0.345  Sum_probs=56.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCc-cc-------ccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGE-LF-------LKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~-~~-------~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      ..+.++|||||||++-|+++.+.|.+........ +.       ....+-|.+..    ..+....++.++-.|+.+.|+
T Consensus       134 ~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~----~~e~~~~l~~l~~~cw~e~P~  209 (484)
T KOG1023|consen  134 ALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIEL----LNELPPELLLLVARCWEEIPE  209 (484)
T ss_pred             cccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhh----hhhcchHHHHHHHHhcccChh
Confidence            4688999999999999999999996521111110 00       11122222211    011222577888999999999


Q ss_pred             CCCChHHHHHHHHhcccc
Q 003931          749 TRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~  766 (785)
                      +||+|..|-..+..+...
T Consensus       210 ~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  210 KRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             hCccHHHHHhhhhhhccc
Confidence            999999998887766543

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=97.53  E-value=2.3e-05  Score=79.31  Aligned_cols=73  Identities=21%  Similarity=0.331  Sum_probs=45.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhh---hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELIT---SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      .+.++|||||||++.|++||+.|.+-..   .+.......+.  +.+..   ...   ..+.++...|.+.+|.+||+|.
T Consensus       179 ~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~---~~~---~~~~~li~~~l~~~p~~Rp~~~  250 (258)
T cd06632         179 YGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKEL--PPIPD---HLS---DEAKDFILKCLQRDPSLRPTAA  250 (258)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccC--CCcCC---CcC---HHHHHHHHHHhhcCcccCcCHH
Confidence            6789999999999999999999954111   00000000000  01110   111   1233456789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ++++
T Consensus       251 ~~l~  254 (258)
T cd06632         251 ELLE  254 (258)
T ss_pred             HHhc
Confidence            9864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=97.53  E-value=2.1e-05  Score=80.93  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=48.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhh----------ccC--ccc---cccc--ccCCCCCCCchhH-----HHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITS----------LSG--ELF---LKDV--LDQRLPPPTGQLA-----EAVVL  734 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~----------~~~--~~~---~~~~--~d~~l~~~~~~~~-----~~~~~  734 (785)
                      ..+.++|||||||+++|++||+.|.....+          ...  +..   ..+.  .+...........     ..-..
T Consensus       175 ~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (282)
T cd07829         175 HYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPE  254 (282)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHH
Confidence            667899999999999999999887531110          000  000   0000  1111110000000     00124


Q ss_pred             HHHHHhhcCCCCCCCCCChHHHHH
Q 003931          735 TINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       735 ~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++...|.+.+|++||++.+|+.
T Consensus       255 ~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         255 GIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             HHHHHHHhhccCcccCCCHHHHhh
Confidence            678889999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.53  E-value=7.1e-05  Score=51.32  Aligned_cols=35  Identities=40%  Similarity=0.617  Sum_probs=13.8

Q ss_pred             CcEEECcCccccccCChhccCCCCCCEEECcCCccc
Q 003931          273 LQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       273 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  308 (785)
                      |++|++++|+++. +|..++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            4444444444442 2333444444444444444443

...

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=97.52  E-value=4.5e-05  Score=78.68  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=49.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---ccccc------ccccCCCCCCCchh-HH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELFLK------DVLDQRLPPPTGQL-AE  730 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~~~------~~~d~~l~~~~~~~-~~  730 (785)
                      |+......+.++|||||||++.|++||+.|..          +..++..   ..+..      ..+.+......... .+
T Consensus       177 E~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (288)
T cd07863         177 EVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPE  256 (288)
T ss_pred             hHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcC
Confidence            44445567889999999999999999998742          1111100   00000      01111110000000 00


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          731 AVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       731 ~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      .-..+.++...|.+.+|++||++.|+.
T Consensus       257 ~~~~~~~li~~~L~~dP~~R~t~~~~l  283 (288)
T cd07863         257 IEESGAQLLLEMLTFNPHKRISAFRAL  283 (288)
T ss_pred             cCHHHHHHHHHHhccCcccCCCHHHHh
Confidence            012245677899999999999999886

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=97.52  E-value=2.5e-05  Score=80.23  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=46.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhh-ccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITS-LSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.|++||+.|...... .........+.......+. .   .-..+.++.-.|.+.+|+
T Consensus       166 PE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~li~~~l~~~P~  241 (280)
T cd05608         166 PELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPD-K---FSPASKSFCEALLAKDPE  241 (280)
T ss_pred             HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcc-c---CCHHHHHHHHHHhcCCHH
Confidence            4555556678899999999999999999999531110 0000001111111111000 0   112244666789999999


Q ss_pred             CCCCh
Q 003931          749 TRPSM  753 (785)
Q Consensus       749 ~Rp~m  753 (785)
                      +||+.
T Consensus       242 ~R~~~  246 (280)
T cd05608         242 KRLGF  246 (280)
T ss_pred             HhcCC
Confidence            99944

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=97.52  E-value=4e-05  Score=80.12  Aligned_cols=83  Identities=16%  Similarity=0.067  Sum_probs=47.7

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC-c-------ccccccccCCCCCC-CchhHH----HH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG-E-------LFLKDVLDQRLPPP-TGQLAE----AV  732 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~-~-------~~~~~~~d~~l~~~-~~~~~~----~~  732 (785)
                      ...+.++|||||||++.|++||+.|.+          +...... .       .......+...... .....+    ..
T Consensus       202 ~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (311)
T cd07866         202 RRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLG  281 (311)
T ss_pred             CccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCC
Confidence            346789999999999999999998843          0000000 0       00011111000000 000000    11


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|.+.+|++||++.||+.
T Consensus       282 ~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         282 PEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             hhHHHHHHHHcccCcccCcCHHHHhc
Confidence            34567888999999999999999863

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=97.52  E-value=6.1e-05  Score=82.44  Aligned_cols=78  Identities=29%  Similarity=0.446  Sum_probs=57.7

Q ss_pred             hhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      .-...|.++|||||||-..|++| |.+|.+      +...++..+        +|..+    ..|-..|..+.+.|+..+
T Consensus       873 ~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~ge--------RLsqP----piCtiDVy~~mvkCwmid  940 (1177)
T KOG1025|consen  873 RIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGE--------RLSQP----PICTIDVYMVMVKCWMID  940 (1177)
T ss_pred             hccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccc--------cCCCC----CCccHHHHHHHHHHhccC
Confidence            44678999999999999999998 888864      222221111        23222    235667788899999999


Q ss_pred             CCCCCChHHHHHHHHhc
Q 003931          747 PDTRPSMRFVAQELSAK  763 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~  763 (785)
                      +..||+.++.+.++.+.
T Consensus       941 ~~~rp~fkel~~~fs~~  957 (1177)
T KOG1025|consen  941 ADSRPTFKELAEEFSRM  957 (1177)
T ss_pred             cccCccHHHHHHHHHHH
Confidence            99999999999888654

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=97.51  E-value=2.1e-05  Score=81.14  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccC-ccccccccc--CCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLD--QRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d--~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      .+.++||||||+++.|++||+.|.....+... ......+..  +....   ..   -..+.++...|.+.+|++||+++
T Consensus       185 ~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~l~~li~~~l~~~p~~R~t~~  258 (288)
T cd05583         185 HDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPK---TM---SAEARDFIQKLLEKDPKKRLGAN  258 (288)
T ss_pred             CcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCCc---cc---CHHHHHHHHHHhcCCHhhccCcc
Confidence            57899999999999999999999531111000 000011111  11111   01   11234566789999999999999


Q ss_pred             HHHHHHHhc
Q 003931          755 FVAQELSAK  763 (785)
Q Consensus       755 ~vv~~l~~~  763 (785)
                      +|.+.|...
T Consensus       259 ~~~~~l~~~  267 (288)
T cd05583         259 GADEIKNHP  267 (288)
T ss_pred             hHHHHhcCc
Confidence            998877653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=97.51  E-value=2.4e-05  Score=81.83  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-...............+.....  ...   ..+.++.-.|.+.+|.+||+|.+
T Consensus       195 ~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~li~~~l~~~P~~Rp~~~~  269 (313)
T cd06633         195 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSN--EWT---DSFRGFVDYCLQKIPQERPASAE  269 (313)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCcc--ccC---HHHHHHHHHHccCChhhCcCHHH
Confidence            3467789999999999999999999531110000000000000111000  000   12345667899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      |++
T Consensus       270 ~l~  272 (313)
T cd06633         270 LLR  272 (313)
T ss_pred             Hhc
Confidence            875

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=5.8e-05  Score=85.51  Aligned_cols=110  Identities=18%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             CCCCcEEEccCCCCcc-cCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcc-cCCccccCCCCCc
Q 003931           52 MPSLTHLGLYLNELTL-EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG-KLSPNVSKLSNLI  129 (785)
Q Consensus        52 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~  129 (785)
                      +|+|++|.+++-.+.. ........+++|..||+|+++++. + ..+ +++++|++|.+.+=.+.. ..-..+.+|++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GI-S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGI-SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHH-hccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            4444444444433221 112223344455555555554441 2 222 445555555444433331 1122344455555


Q ss_pred             EEEcCCCcccccC------CcCCCCCCCCCEEEcccCcccc
Q 003931          130 DLRLATNKFSGPI------PGDIGSMSNLQLVELFNNSFTG  164 (785)
Q Consensus       130 ~L~L~~n~~~~~~------~~~l~~l~~L~~L~L~~n~~~~  164 (785)
                      .||+|..+.....      -+--..+++|+.||.+++.+..
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            5555544332111      0011236677777777665553

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.51  E-value=3.2e-05  Score=80.91  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCc-hh-hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGE-LI-TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~-~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      .+++..|+||||.|++|.+|+-||.|.. +. .|.    ++..+.||...-+..+. -+-.++++++-.|.+.+|.+||+
T Consensus       546 k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~a----Kl~aI~~P~~~Iefp~~-~~~~~li~~mK~CL~rdPkkR~s  620 (677)
T KOG0596|consen  546 KIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIA----KLHAITDPNHEIEFPDI-PENDELIDVMKCCLARDPKKRWS  620 (677)
T ss_pred             ceeecCccchhhhhhHHHHHHhcCCchHHHHHHHH----HHHhhcCCCccccccCC-CCchHHHHHHHHHHhcCcccCCC
Confidence            5689999999999999999999999954 22 222    34566677442111111 01122677888999999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      .-|+++
T Consensus       621 i~eLLq  626 (677)
T KOG0596|consen  621 IPELLQ  626 (677)
T ss_pred             cHHHhc
Confidence            998864

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=97.51  E-value=4.8e-05  Score=78.36  Aligned_cols=82  Identities=15%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC-ccccccccc----------CCCCCCCchhHHH---
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG-ELFLKDVLD----------QRLPPPTGQLAEA---  731 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~-~~~~~~~~d----------~~l~~~~~~~~~~---  731 (785)
                      ...+.|+|||||||++.|++||+.|..          +...... .....++.+          +..... ......   
T Consensus       176 ~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  254 (286)
T cd07847         176 TQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETR-EPLESKFPN  254 (286)
T ss_pred             CCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccc-cCHHHHhcc
Confidence            346789999999999999999998842          0100000 000001111          110000 000000   


Q ss_pred             -HHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          732 -VVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       732 -~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                       -..+.++...|.+.+|++||++.|++.
T Consensus       255 ~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         255 ISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             CCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence             123557788999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=97.50  E-value=3.7e-05  Score=79.12  Aligned_cols=75  Identities=24%  Similarity=0.326  Sum_probs=46.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc---cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL---DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~---d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ..+.++||||||+++.|++||+.|.+-  +.........+.   .+.+...  ...   ..+.++...|...+|++||++
T Consensus       183 ~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~li~~~l~~~p~~Rp~~  255 (283)
T cd06617         183 GYDVKSDVWSLGITMIELATGRFPYDS--WKTPFQQLKQVVEEPSPQLPAE--KFS---PEFQDFVNKCLKKNYKERPNY  255 (283)
T ss_pred             ccCccccchhhHHHHHHHHhCCCCCCc--cccCHHHHHHHHhcCCCCCCcc--ccC---HHHHHHHHHHccCChhhCcCH
Confidence            346799999999999999999999631  100000111111   1111110  001   124456778999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .+|.+
T Consensus       256 ~~il~  260 (283)
T cd06617         256 PELLQ  260 (283)
T ss_pred             HHHhc
Confidence            99865

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=97.49  E-value=2.7e-05  Score=80.50  Aligned_cols=84  Identities=17%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|.........-....+...+...... ..   -..+..+.-.|.+.+|.+|
T Consensus       186 E~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~l~~li~~~l~~~P~~R  261 (292)
T cd06657         186 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLH-KV---SPSLKGFLDRLLVRDPAQR  261 (292)
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcc-cC---CHHHHHHHHHHHhCCcccC
Confidence            4444456678999999999999999999985310000000000001111111000 00   0123345668999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.||.+
T Consensus       262 ~~~~~ll~  269 (292)
T cd06657         262 ATAAELLK  269 (292)
T ss_pred             cCHHHHhc
Confidence            99999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=97.49  E-value=2.1e-05  Score=79.77  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ....+.++|||||||++.|++||+.|.......   .....+...............-..+.++.-.|.+.+|++||++.
T Consensus       167 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~  243 (260)
T cd05611         167 GVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD---AVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGAN  243 (260)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCC
Confidence            344678999999999999999999996411000   00000000000000000000112355778899999999999987


Q ss_pred             HHHHHHH
Q 003931          755 FVAQELS  761 (785)
Q Consensus       755 ~vv~~l~  761 (785)
                      ++.+.+.
T Consensus       244 ~~~~~l~  250 (260)
T cd05611         244 GYQEIKS  250 (260)
T ss_pred             cHHHHHc
Confidence            7655543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=97.47  E-value=5.5e-05  Score=77.09  Aligned_cols=77  Identities=21%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccc----ccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDV----LDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~----~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      ....+.++||||+|+++.|++||+.|.+............++    ..+...      ...-..+.++...|...+|++|
T Consensus       182 ~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~l~~~p~~R  255 (268)
T cd06630         182 GEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIP------EHLSPGLRDVTLRCLELQPEDR  255 (268)
T ss_pred             cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCc------hhhCHHHHHHHHHHcCCCcccC
Confidence            345578999999999999999999985311110000000000    011110      0111234567789999999999


Q ss_pred             CChHHHH
Q 003931          751 PSMRFVA  757 (785)
Q Consensus       751 p~m~~vv  757 (785)
                      |++.|++
T Consensus       256 ~~~~~ll  262 (268)
T cd06630         256 PPSRELL  262 (268)
T ss_pred             cCHHHHh
Confidence            9999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=97.46  E-value=9.2e-05  Score=75.41  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ..++.++|||||||+++|++||+.|..-.   ..+... .......+...... ...+   .+.++...|.+.+|++||+
T Consensus       184 ~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~P~~R~~  258 (267)
T cd06645         184 GGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLM-TKSNFQPPKLKDKM-KWSN---SFHHFVKMALTKNPKKRPT  258 (267)
T ss_pred             CCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhh-hccCCCCCcccccC-CCCH---HHHHHHHHHccCCchhCcC
Confidence            34678999999999999999999984200   000000 00000001110000 0001   2346677899999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      +.+|++
T Consensus       259 ~~~ll~  264 (267)
T cd06645         259 AEKLLQ  264 (267)
T ss_pred             HHHHhc
Confidence            998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=97.46  E-value=5.4e-05  Score=78.28  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             cccccceeeeehhhhhhhhCCCCCc
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      .+.++|||||||++.|++||+.|.+
T Consensus       181 ~~~~~Dv~slG~~l~~l~~g~~~f~  205 (291)
T cd07870         181 YSSALDIWGAGCIFIEMLQGQPAFP  205 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            5678999999999999999999853

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=97.46  E-value=3.6e-05  Score=81.45  Aligned_cols=88  Identities=18%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch----------hhhccC--c--------ccccccccCCCCCCCchhH----HHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG--E--------LFLKDVLDQRLPPPTGQLA----EAV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~--~--------~~~~~~~d~~l~~~~~~~~----~~~  732 (785)
                      ..+.++|||||||++.|++||+.|..-          ..+...  .        ....++++...........    ..-
T Consensus       189 ~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (337)
T cd07852         189 RYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKAS  268 (337)
T ss_pred             cccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCC
Confidence            457889999999999999999988530          000000  0        0000111100000000000    011


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHHH--HHhcc
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQE--LSAKT  764 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~~--l~~~~  764 (785)
                      ..+.++...|.+.+|++||+|.+|++.  +....
T Consensus       269 ~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~  302 (337)
T cd07852         269 DDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFH  302 (337)
T ss_pred             HHHHHHHHHhccCCcccccCHHHHhhChhhhhhc
Confidence            235677889999999999999999864  44443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=97.45  E-value=3.7e-05  Score=80.52  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+-.....+.++|||||||++.|++||+.|..-...   ......+.  .+.+..   ....+   +.++.-.|.+.+|+
T Consensus       166 E~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~~~---~~~~~---~~~ll~~~l~~~P~  236 (316)
T cd05592         166 EILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE---DELFDSILNDRPHFPR---WISKE---AKDCLSKLFERDPT  236 (316)
T ss_pred             HHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCC---CCCHH---HHHHHHHHccCCHH
Confidence            444445678899999999999999999999531100   00000000  011111   01112   23455689999999


Q ss_pred             CCCChHHHH
Q 003931          749 TRPSMRFVA  757 (785)
Q Consensus       749 ~Rp~m~~vv  757 (785)
                      +||++.+.+
T Consensus       237 ~R~~~~~~l  245 (316)
T cd05592         237 KRLGVDGDI  245 (316)
T ss_pred             HcCCChHHH
Confidence            999986443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=5e-05  Score=85.99  Aligned_cols=136  Identities=26%  Similarity=0.290  Sum_probs=84.5

Q ss_pred             CCccEEECCCCCC-cccCChhhhcCCCCCcEEECCCCCCccc-CCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCE
Q 003931           77 RNLTYLDLSLNKL-SGLIPERLFTNLGKLEYLNLTENQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQL  154 (785)
Q Consensus        77 ~~L~~L~Ls~n~i-~~~~~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  154 (785)
                      .+|++|++++... ....|..+...+|.|+.|.+++-.+... ....+.++++|..||+|++.++..  ..++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4677777777532 2233445556677777777776555422 123345677777888887777744  45677777777


Q ss_pred             EEcccCcccc-cCCccccCCCCCCEEEcccCcCcccC------CccccCCcccCeeeccccccccCC
Q 003931          155 VELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTI------PPELGLCTNLSYLALAVNQLSGGL  214 (785)
Q Consensus       155 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~i~~~~  214 (785)
                      |.+.+=.+.. ..-..+.++++|++||+|........      -+.-..+|+|+.|+.+++.+....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            7777655542 11234667888888888776543211      112234788999999988776544

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=97.44  E-value=6.6e-05  Score=75.90  Aligned_cols=82  Identities=27%  Similarity=0.331  Sum_probs=49.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++||||||++++|+++|+.|.+-....   ..................   -..+..+...|...+|++|
T Consensus       173 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~l~~~p~~R  246 (258)
T cd08215         173 ELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLL---ELALKILKGQYPPIPSQY---SSELRNLVSSLLQKDPEER  246 (258)
T ss_pred             hHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHH---HHHHHHhcCCCCCCCCCC---CHHHHHHHHHHcCCChhhC
Confidence            3334455788999999999999999999995411100   000001111110000011   1234567789999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.||++
T Consensus       247 p~~~~ll~  254 (258)
T cd08215         247 PSIAQILQ  254 (258)
T ss_pred             cCHHHHhc
Confidence            99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.44  E-value=6.2e-05  Score=79.56  Aligned_cols=79  Identities=25%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             ccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          677 RVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ..+.|+|||+|||+|.||.| |-.|.-=+.-    ..+-+.+  +.++.++    +.|--+|+++..+|+.-+|.+||+.
T Consensus       442 tFSiKSDVWAFGVLLWEIATYGMsPYPGidl----SqVY~LLEkgyRM~~P----eGCPpkVYeLMraCW~WsPsDRPsF  513 (1157)
T KOG4278|consen  442 TFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVYGLLEKGYRMDGP----EGCPPKVYELMRACWNWSPSDRPSF  513 (1157)
T ss_pred             ccccchhhHHHHHHHHHHHhcCCCCCCCccH----HHHHHHHhccccccCC----CCCCHHHHHHHHHHhcCCcccCccH
Confidence            45789999999999999998 6666320000    0011112  2233332    3466788999999999999999999


Q ss_pred             HHHHHHHHhc
Q 003931          754 RFVAQELSAK  763 (785)
Q Consensus       754 ~~vv~~l~~~  763 (785)
                      +|+-+.++.+
T Consensus       514 aeiHqafEtm  523 (1157)
T KOG4278|consen  514 AEIHQAFETM  523 (1157)
T ss_pred             HHHHHHHHHH
Confidence            9988877643

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=97.43  E-value=2.5e-05  Score=82.15  Aligned_cols=83  Identities=14%  Similarity=0.141  Sum_probs=48.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.||+||+.|..-...   ......+....+.......    ..+.++.-.|.+.+|++|
T Consensus       166 E~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~ll~~ll~~~p~~R  238 (325)
T cd05604         166 EVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV---AEMYDNILHKPLVLRPGAS----LTAWSILEELLEKDRQRR  238 (325)
T ss_pred             HHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH---HHHHHHHHcCCccCCCCCC----HHHHHHHHHHhccCHHhc
Confidence            444455677899999999999999999999531000   0000111111111000011    123355677999999999


Q ss_pred             CChHHHHHHH
Q 003931          751 PSMRFVAQEL  760 (785)
Q Consensus       751 p~m~~vv~~l  760 (785)
                      |++++.++++
T Consensus       239 ~~~~~~~~~i  248 (325)
T cd05604         239 LGAKEDFLEI  248 (325)
T ss_pred             CCCCCCHHHH
Confidence            9987555444

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=97.43  E-value=5e-05  Score=79.12  Aligned_cols=85  Identities=11%  Similarity=0.021  Sum_probs=51.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc---hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+-.....+.++|||||||+++|++||+.|..   ..+.... ........+....   .   .-..+.++.-.|.+.+|
T Consensus       186 E~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~-~~~~~~~~~~~~~---~---~~~~~~~li~~~l~~~P  258 (305)
T cd05609         186 EVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQ-VISDDIEWPEGDE---A---LPADAQDLISRLLRQNP  258 (305)
T ss_pred             hhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHhcccCCCCccc---c---CCHHHHHHHHHHhccCh
Confidence            33334557889999999999999999999852   0000000 0000111111110   0   01224577889999999


Q ss_pred             CCCCChHHHHHHHHh
Q 003931          748 DTRPSMRFVAQELSA  762 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~  762 (785)
                      ++||++.++.+.+..
T Consensus       259 ~~R~~~~~~~~ll~~  273 (305)
T cd05609         259 LERLGTGGAFEVKQH  273 (305)
T ss_pred             hhccCccCHHHHHhC
Confidence            999998766666654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=97.42  E-value=2.7e-05  Score=81.66  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||++.|++||+.|.+-....   .....+......-+. .....   +..+.-.|.+.+|++|
T Consensus       168 E~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~---~~~~~i~~~~~~~p~-~~~~~---~~~li~~~l~~~P~~R  240 (318)
T cd05582         168 EVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK---ETMTMILKAKLGMPQ-FLSPE---AQSLLRALFKRNPANR  240 (318)
T ss_pred             HHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHH---HHHHHHHcCCCCCCC-CCCHH---HHHHHHHHhhcCHhHc
Confidence            4444445678999999999999999999995411110   000111111111000 01112   2345568999999999


Q ss_pred             CChHH
Q 003931          751 PSMRF  755 (785)
Q Consensus       751 p~m~~  755 (785)
                      |++.+
T Consensus       241 ~~a~~  245 (318)
T cd05582         241 LGAGP  245 (318)
T ss_pred             CCCCC
Confidence            99655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=97.40  E-value=4.7e-05  Score=80.00  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||++.||+||+.|.+-...   ......+.......+. ....   .+.++...|.+.+|++|
T Consensus       170 E~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~---~~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~R  242 (323)
T cd05584         170 EILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR---KKTIDKILKGKLNLPP-YLTP---EARDLLKKLLKRNPSSR  242 (323)
T ss_pred             hhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCH---HHHHHHHHHcccCHhHc
Confidence            433344567899999999999999999999531110   0001111111111111 1111   23456678999999999


Q ss_pred             C-----ChHHHHH
Q 003931          751 P-----SMRFVAQ  758 (785)
Q Consensus       751 p-----~m~~vv~  758 (785)
                      |     ++.++.+
T Consensus       243 ~~~~~~~~~~l~~  255 (323)
T cd05584         243 LGAGPGDAAEVQS  255 (323)
T ss_pred             CCCCCCCHHHHhc
Confidence            9     6666543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=97.39  E-value=4.3e-05  Score=79.47  Aligned_cols=82  Identities=12%  Similarity=0.073  Sum_probs=46.9

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhh----------hccC--ccccccc--------ccCCCCCCC---chhHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELIT----------SLSG--ELFLKDV--------LDQRLPPPT---GQLAEAVV  733 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~----------~~~~--~~~~~~~--------~d~~l~~~~---~~~~~~~~  733 (785)
                      ..+.++|||||||+++|++||+.|.+...          .+..  .....++        .|+.-....   ......-.
T Consensus       194 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (302)
T cd07864         194 RYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPT  273 (302)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCH
Confidence            35788999999999999999998864111          1100  0000111        011000000   00000012


Q ss_pred             HHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          734 LTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       734 ~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .+.++.-.|...+|++||++.+|+.
T Consensus       274 ~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         274 PALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhc
Confidence            3557778899999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.39  E-value=3.6e-06  Score=84.80  Aligned_cols=295  Identities=19%  Similarity=0.100  Sum_probs=161.3

Q ss_pred             CCcEEEccCCCCCC-Cccccc-cCCCCCCEEeCCCCC-CCCCCcccc-CCCCCCcEEEccCCC-CcccCCc-cCCCCCCc
Q 003931            6 ELQYLSVYDNNLNG-AIPFQL-SSLRKVRYLDLGGNF-LETPDWSKF-SSMPSLTHLGLYLNE-LTLEFPS-FILTCRNL   79 (785)
Q Consensus         6 ~L~~L~L~~n~i~~-~~~~~~-~~l~~L~~L~L~~n~-i~~~~~~~f-~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L   79 (785)
                      -|+.|++.++.=.+ ..-.+| .+++++++|++.++. +++.....+ ..|+.|++|++..|. ++...-. ....|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            36777888775322 222233 678888888888875 333322223 357888888888743 4444333 34568888


Q ss_pred             cEEECCCC-CCcccCChhhhcCCCCCcEEECCCCCCcccCCccc----cCCCCCcEEEcCCCcc-cccCC-cCCCCCCCC
Q 003931           80 TYLDLSLN-KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV----SKLSNLIDLRLATNKF-SGPIP-GDIGSMSNL  152 (785)
Q Consensus        80 ~~L~Ls~n-~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~n~~-~~~~~-~~l~~l~~L  152 (785)
                      .+|+++.| .|++.--..++.++..++.+.+.+|.=  ...+.+    ..+..+..+++.++.. ++..- ..-..+..|
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            88888888 444432334556777777777765421  111222    2334455556555532 21110 011356778


Q ss_pred             CEEEcccCcccccC-Ccc-ccCCCCCCEEEcccCcC-cccCCccc-cCCcccCeeecccccccc--CCchhccCCCCCCE
Q 003931          153 QLVELFNNSFTGQI-PSS-LGQLKNLQHLDLRMNAL-NYTIPPEL-GLCTNLSYLALAVNQLSG--GLPLSLSNLSKLND  226 (785)
Q Consensus       153 ~~L~L~~n~~~~~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~  226 (785)
                      ++|+.+++...+.. -.+ -.+..+|+.|.++.++- +..-...+ .+++.|+.+++..+....  .+...-.+++.|++
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            88887776442211 111 23467788888877762 21111112 256678888777665421  11222246778888


Q ss_pred             EEccCCCCccccC----ccccCCCCCCCEEEeecCcCcc-cCCccCcCCCCCcEEECcCcccc--ccCChhccCCCCCCE
Q 003931          227 LGLSDNFLSGEIS----ANLIGNWTELESLQIQNNSFMG-NIPPEIGLLTKLQYLFLYRNNFS--GPIPSEIEKLTSLEN  299 (785)
Q Consensus       227 L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~  299 (785)
                      +.+++|....+--    ...-..+..|+.+.|+++.... ..-..+..+++|+.+++.++.--  ..+...-.++++++.
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v  456 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV  456 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence            8888776432210    0112345668888888886432 23345667788888888877531  112222244555554


Q ss_pred             EEC
Q 003931          300 LDL  302 (785)
Q Consensus       300 L~L  302 (785)
                      .-+
T Consensus       457 ~a~  459 (483)
T KOG4341|consen  457 HAY  459 (483)
T ss_pred             hhh
Confidence            443

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=97.38  E-value=3.7e-05  Score=81.32  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch----------hhhccC--cccccccccCCC-------CC-CCchhH----HHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG--ELFLKDVLDQRL-------PP-PTGQLA----EAV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~--~~~~~~~~d~~l-------~~-~~~~~~----~~~  732 (785)
                      ..+.++|||||||++.|++||+.|..-          ...+..  .+...++.+...       .. ......    ..-
T Consensus       186 ~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (336)
T cd07849         186 GYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNAD  265 (336)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccC
Confidence            467899999999999999999988531          010100  011111111110       00 000000    011


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHHH--HHhcc
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQE--LSAKT  764 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~~--l~~~~  764 (785)
                      ..+..+...|.+.+|++||+|.||++.  +....
T Consensus       266 ~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         266 PKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             cHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence            235678889999999999999999774  54443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=97.38  E-value=8.8e-05  Score=77.10  Aligned_cols=93  Identities=12%  Similarity=0.048  Sum_probs=51.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc---h---h----hhccC--ccccccccc------CCCCCCCchhH-----HHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE---L---I----TSLSG--ELFLKDVLD------QRLPPPTGQLA-----EAVV  733 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~---~---~----~~~~~--~~~~~~~~d------~~l~~~~~~~~-----~~~~  733 (785)
                      ..+.++|||||||++.||+||+.|..   .   .    .....  ......+++      ...........     ..--
T Consensus       181 ~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (301)
T cd07873         181 DYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDS  260 (301)
T ss_pred             CCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCH
Confidence            35678999999999999999998843   0   0    00000  000001110      01100000000     0001


Q ss_pred             HHHHHHhhcCCCCCCCCCChHHHHH--HHHhcccccCC
Q 003931          734 LTINVALACTSTTPDTRPSMRFVAQ--ELSAKTQAYLP  769 (785)
Q Consensus       734 ~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~~~~~~  769 (785)
                      .+.++...|...+|++||++.||++  +++...+.+..
T Consensus       261 ~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~~~~~~  298 (301)
T cd07873         261 DGAELLSKLLQFEGRKRISAEEAMKHPYFHCLGERIHK  298 (301)
T ss_pred             HHHHHHHHHhcCCcccCcCHHHHhcCcccccccchhhc
Confidence            2346778899999999999999976  45555544443

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=97.37  E-value=5.4e-05  Score=78.28  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||++.|++||+.|.
T Consensus       180 ~~~~~~Dv~slG~il~~l~~g~~~~  204 (291)
T cd07844         180 EYSTSLDMWGVGCIFYEMATGRPLF  204 (291)
T ss_pred             ccCcHHHHHHHHHHHHHHHhCCCCC
Confidence            3578999999999999999999885

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=97.36  E-value=5.3e-05  Score=79.81  Aligned_cols=84  Identities=21%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-c----ccc-cccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-E----LFL-KDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~----~~~-~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+......+.++|||||||++.|++||+.|.+....... .    ... ..+......-+. ..   -..+..+...|.
T Consensus       165 PE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~---~~~~~~li~~~L  240 (329)
T cd05588         165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPR-SL---SVKASSVLKGFL  240 (329)
T ss_pred             HHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCC-CC---CHHHHHHHHHHh
Confidence            3554555677899999999999999999999753221110 0    000 111111111111 11   112345667899


Q ss_pred             CCCCCCCCC------hHHHH
Q 003931          744 STTPDTRPS------MRFVA  757 (785)
Q Consensus       744 ~~~p~~Rp~------m~~vv  757 (785)
                      +.+|++||+      +.||.
T Consensus       241 ~~dP~~R~~~~~~~~~~~i~  260 (329)
T cd05588         241 NKDPKERLGCHPQTGFRDIK  260 (329)
T ss_pred             ccCHHHcCCCCCCCCHHHHh
Confidence            999999997      56664

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=97.36  E-value=5.8e-05  Score=79.25  Aligned_cols=81  Identities=19%  Similarity=0.319  Sum_probs=47.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|.+-...   ......+.......+. ....   .+.++.-.|.+.+|++
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~ll~~~L~~dp~~  237 (321)
T cd05591         165 PEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE---DDLFESILHDDVLYPV-WLSK---EAVSILKAFMTKNPNK  237 (321)
T ss_pred             HHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCH---HHHHHHHHHhccCHHH
Confidence            3444455678899999999999999999999541100   0000111111110000 0011   2345566799999999


Q ss_pred             CC-------ChHHHH
Q 003931          750 RP-------SMRFVA  757 (785)
Q Consensus       750 Rp-------~m~~vv  757 (785)
                      ||       ++.++.
T Consensus       238 R~~~~~~~~~~~~~~  252 (321)
T cd05591         238 RLGCVASQGGEDAIK  252 (321)
T ss_pred             cCCCCCCCCCHHHHh
Confidence            99       666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=97.36  E-value=4.4e-05  Score=79.99  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||+.|.+-....   .....+.......+. ...   ..+.++.-.|.+.+|++
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~---~~~~~i~~~~~~~~~-~~~---~~~~~li~~~l~~dP~~  237 (318)
T cd05570         165 PEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED---ELFQSILEDEVRYPR-WLS---KEAKSILKSFLTKNPEK  237 (318)
T ss_pred             HHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH---HHHHHHHcCCCCCCC-cCC---HHHHHHHHHHccCCHHH
Confidence            34444556788999999999999999999995311100   000001111110000 011   12345667899999999


Q ss_pred             CCCh-----HHHHH
Q 003931          750 RPSM-----RFVAQ  758 (785)
Q Consensus       750 Rp~m-----~~vv~  758 (785)
                      ||++     .++.+
T Consensus       238 R~s~~~~~~~~ll~  251 (318)
T cd05570         238 RLGCLPTGEQDIKG  251 (318)
T ss_pred             cCCCCCCCHHHHhc
Confidence            9999     77754

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=97.35  E-value=0.00011  Score=77.18  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||++.|++||+.|.
T Consensus       192 ~~~~~~DiwSlG~il~el~tg~~~f  216 (317)
T cd07867         192 HYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             ccCcHHHHHhHHHHHHHHHhCCCCc
Confidence            4678999999999999999999884

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=97.35  E-value=0.00012  Score=75.68  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=22.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||+++|++||+.|.
T Consensus       180 ~~~~~~Dv~slG~i~~~l~tg~~pf  204 (294)
T PLN00009        180 HYSTPVDIWSVGCIFAEMVNQKPLF  204 (294)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            4678999999999999999999884

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.34  E-value=8.1e-05  Score=86.01  Aligned_cols=90  Identities=16%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+..+...+.++|||||||++.||+||+.|..-... ........+.++.-..+.   .+.-..+.+++..|.+.+|++
T Consensus       200 PE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~-~ki~~~~~i~~P~~~~p~---~~iP~~L~~LI~rcL~~DP~k  275 (932)
T PRK13184        200 PERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKG-RKISYRDVILSPIEVAPY---REIPPFLSQIAMKALAVDPAE  275 (932)
T ss_pred             HHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcch-hhhhhhhhccChhhcccc---ccCCHHHHHHHHHHccCChhh
Confidence            4666666788999999999999999999999531000 000000011111100000   001122456778899999999


Q ss_pred             CC-ChHHHHHHHHhc
Q 003931          750 RP-SMRFVAQELSAK  763 (785)
Q Consensus       750 Rp-~m~~vv~~l~~~  763 (785)
                      || ++.++.+.|+..
T Consensus       276 R~ss~eeLl~~Le~~  290 (932)
T PRK13184        276 RYSSVQELKQDLEPH  290 (932)
T ss_pred             CcCHHHHHHHHHHHH
Confidence            95 677777777665

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=97.34  E-value=5.7e-05  Score=77.78  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++|||||||++.||+||+.|.
T Consensus       177 ~~~~~DiwslG~il~~l~tg~~p~  200 (284)
T cd07839         177 YSTSIDMWSAGCIFAELANAGRPL  200 (284)
T ss_pred             cCcHHHHHHHHHHHHHHHhcCCCC
Confidence            478899999999999999999984

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=97.33  E-value=5.8e-05  Score=79.44  Aligned_cols=81  Identities=23%  Similarity=0.314  Sum_probs=46.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC---cccc-cccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG---ELFL-KDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~---~~~~-~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+......+.++|||||||++.|++||+.|.+....-..   .... ..+......-+....    ....++...|...
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~li~~~L~~  240 (327)
T cd05617         165 PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLS----VKASHVLKGFLNK  240 (327)
T ss_pred             HHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCC----HHHHHHHHHHhcc
Confidence            3554555678899999999999999999999642110000   0000 011111111010011    1233566778999


Q ss_pred             CCCCCCChH
Q 003931          746 TPDTRPSMR  754 (785)
Q Consensus       746 ~p~~Rp~m~  754 (785)
                      +|++||+++
T Consensus       241 dP~~R~~~~  249 (327)
T cd05617         241 DPKERLGCQ  249 (327)
T ss_pred             CHHHcCCCC
Confidence            999999853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=97.33  E-value=7.3e-05  Score=78.08  Aligned_cols=24  Identities=13%  Similarity=0.091  Sum_probs=21.8

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++|||||||++.|++||+.|.
T Consensus       201 ~~~~~Di~slG~~l~el~t~~~~~  224 (310)
T cd07865         201 YGPPIDMWGAGCIMAEMWTRSPIM  224 (310)
T ss_pred             cCchhhhHHHHHHHHHHHhCCCCC
Confidence            567899999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=97.33  E-value=6.2e-05  Score=79.11  Aligned_cols=79  Identities=22%  Similarity=0.292  Sum_probs=47.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+......+.++|||||||++.||+||+.|..-..+   ......+.  +.....   ....+   +.++.-.|.+.+|+
T Consensus       165 E~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~---~~~~~~~~~~~~~~p~---~~~~~---~~~li~~~L~~dP~  235 (323)
T cd05571         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKLFELILMEEIRFPR---TLSPE---AKSLLAGLLKKDPK  235 (323)
T ss_pred             hhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH---HHHHHHHHcCCCCCCC---CCCHH---HHHHHHHHccCCHH
Confidence            444445678899999999999999999999531000   00000000  111111   11112   33455689999999


Q ss_pred             CCC-----ChHHHHH
Q 003931          749 TRP-----SMRFVAQ  758 (785)
Q Consensus       749 ~Rp-----~m~~vv~  758 (785)
                      +||     +..++.+
T Consensus       236 ~R~~~~~~~~~~ll~  250 (323)
T cd05571         236 QRLGGGPEDAKEIME  250 (323)
T ss_pred             HcCCCCCCCHHHHHc
Confidence            999     6777653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00284 protein kinase; Provisional

Probab=97.32  E-value=0.0001  Score=81.76  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=27.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.++|||||||++.||+||+.|.+
T Consensus       314 PE~~~~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        314 PEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             cHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            355455567889999999999999999999964

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=97.32  E-value=7.2e-05  Score=76.12  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=26.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      |.......+.++|||||||++.|++||+.|..
T Consensus       179 E~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  210 (265)
T cd06652         179 EVISGEGYGRKADIWSVGCTVVEMLTEKPPWA  210 (265)
T ss_pred             hhhcCCCCCcchhHHHHHHHHHHHhhCCCCCC
Confidence            33334556889999999999999999999953

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=97.32  E-value=6.1e-05  Score=87.49  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc-cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL-DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++||||||||++||+||+.|..-.....  .....+- .+.+... .. .   ..+..+...|.+.+|++||++.
T Consensus       218 ~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~--qli~~lk~~p~lpi~-~~-S---~eL~dLI~~~L~~dPeeRPSa~  290 (1021)
T PTZ00266        218 KSYDDKSDMWALGCIIYELCSGKTPFHKANNFS--QLISELKRGPDLPIK-GK-S---KELNILIKNLLNLSAKERPSAL  290 (1021)
T ss_pred             CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHH--HHHHHHhcCCCCCcC-CC-C---HHHHHHHHHHhcCChhHCcCHH
Confidence            346789999999999999999999953110000  0000000 0111100 01 1   1234566789999999999999


Q ss_pred             HHH--HHHHhcc
Q 003931          755 FVA--QELSAKT  764 (785)
Q Consensus       755 ~vv--~~l~~~~  764 (785)
                      +++  .++..+.
T Consensus       291 QlL~h~~ik~i~  302 (1021)
T PTZ00266        291 QCLGYQIIKNVG  302 (1021)
T ss_pred             HHhccHHHhhcC
Confidence            997  4555443

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=97.31  E-value=0.00014  Score=77.53  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=27.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.++|||||||++.||+||+.|..
T Consensus       199 PE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~  231 (350)
T cd05573         199 PEVLRGTPYGLECDWWSLGVILYEMLYGFPPFY  231 (350)
T ss_pred             HHHHcCCCCCCceeeEecchhhhhhccCCCCCC
Confidence            354455577899999999999999999999953

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=97.31  E-value=9.7e-05  Score=78.33  Aligned_cols=90  Identities=16%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchh------h---hccC-c--cccccccc----------CCCCCCCchh--HHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELI------T---SLSG-E--LFLKDVLD----------QRLPPPTGQL--AEA  731 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~------~---~~~~-~--~~~~~~~d----------~~l~~~~~~~--~~~  731 (785)
                      ...+.++|||||||++.|++||+.|..-.      .   +... .  .....+.+          +.........  ...
T Consensus       190 ~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T cd07879         190 MHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKA  269 (342)
T ss_pred             cccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCC
Confidence            34678999999999999999999985300      0   0000 0  00000000          0000000000  000


Q ss_pred             HHHHHHHHhhcCCCCCCCCCChHHHHH--HHHhccc
Q 003931          732 VVLTINVALACTSTTPDTRPSMRFVAQ--ELSAKTQ  765 (785)
Q Consensus       732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~~  765 (785)
                      -..+.++...|.+.+|++||++.||++  .++..+.
T Consensus       270 ~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         270 SPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            112456778899999999999999984  3666554

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=97.31  E-value=4.6e-05  Score=80.10  Aligned_cols=78  Identities=13%  Similarity=0.133  Sum_probs=44.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.||+||+.|..-...   ......+......... ....   .+.++.-.|.+.+|++|
T Consensus       166 E~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~R  238 (323)
T cd05575         166 EVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT---AEMYDNILNKPLRLKP-NISV---SARHLLEGLLQKDRTKR  238 (323)
T ss_pred             hhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCH---HHHHHHHHHhhcCHHhC
Confidence            444445567899999999999999999999531000   0000111111111000 0111   23345567999999999


Q ss_pred             CChHH
Q 003931          751 PSMRF  755 (785)
Q Consensus       751 p~m~~  755 (785)
                      |++++
T Consensus       239 ~~~~~  243 (323)
T cd05575         239 LGAKD  243 (323)
T ss_pred             CCCCC
Confidence            99863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=97.30  E-value=0.0001  Score=76.46  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=47.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccC--cc------cccccccCCCCCCCc---hhHHHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG--EL------FLKDVLDQRLPPPTG---QLAEAVVLT  735 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~--~~------~~~~~~d~~l~~~~~---~~~~~~~~~  735 (785)
                      ..+.++|||||||++.|++||+.|..          ....+..  ..      ...............   .....-..+
T Consensus       179 ~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
T cd07841         179 HYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDA  258 (298)
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHH
Confidence            45789999999999999999965532          0000000  00      000010000000000   000111245


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHHH
Q 003931          736 INVALACTSTTPDTRPSMRFVAQE  759 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~~  759 (785)
                      .++...|.+.+|++||+|.||++.
T Consensus       259 ~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         259 LDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             HHHHHHHhcCCcccCcCHHHHhhC
Confidence            677889999999999999999873

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=97.30  E-value=6.9e-05  Score=78.76  Aligned_cols=77  Identities=16%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|.+-...   ......+.+.....+....    ..+..+...|.+.+|++
T Consensus       170 PE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~---~~~~~~i~~~~~~~p~~~s----~~~~~li~~~l~~~p~~  242 (323)
T cd05616         170 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELFQSIMEHNVAYPKSMS----KEAVAICKGLMTKHPGK  242 (323)
T ss_pred             HHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCCcCC----HHHHHHHHHHcccCHHh
Confidence            3555555678999999999999999999999641100   0001111111111111111    12346678899999999


Q ss_pred             CCCh
Q 003931          750 RPSM  753 (785)
Q Consensus       750 Rp~m  753 (785)
                      ||+.
T Consensus       243 R~~~  246 (323)
T cd05616         243 RLGC  246 (323)
T ss_pred             cCCC
Confidence            9984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=97.30  E-value=0.00012  Score=74.01  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=46.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc-CCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD-QRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++||||||+++.|++||+.|.+....... ....+... .....+. ...   ..+.++.-.|.+.+|.+
T Consensus       169 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~i~~~l~~~p~~  243 (258)
T cd05578         169 EVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIR-DQIRAKQETADVLYPA-TWS---TEAIDAINKLLERDPQK  243 (258)
T ss_pred             HHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHH-HHHHHHhccccccCcc-cCc---HHHHHHHHHHccCChhH
Confidence            444455578999999999999999999999652111000 00000111 1100000 111   23445667899999999


Q ss_pred             CCChH
Q 003931          750 RPSMR  754 (785)
Q Consensus       750 Rp~m~  754 (785)
                      ||+..
T Consensus       244 R~~~~  248 (258)
T cd05578         244 RLGDN  248 (258)
T ss_pred             cCCcc
Confidence            99993

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=97.29  E-value=8.7e-05  Score=76.87  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----h------hhhccC-c-ccccccccCC----CCC-CCchhH----HHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----L------ITSLSG-E-LFLKDVLDQR----LPP-PTGQLA----EAVVLT  735 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----~------~~~~~~-~-~~~~~~~d~~----l~~-~~~~~~----~~~~~~  735 (785)
                      ..+.++|||||||++.|++||+.|..    .      ...+.. . ....++.+..    ... ......    ..-..+
T Consensus       188 ~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (295)
T cd07837         188 HYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEG  267 (295)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHH
Confidence            45789999999999999999998852    0      111000 0 0000000000    000 000000    011235


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHH
Q 003931          736 INVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .++...|.+.+|++||++.|++.
T Consensus       268 ~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         268 LDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             HHHHHHHccCChhhcCCHHHHhc
Confidence            56778999999999999999864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=97.29  E-value=7.8e-05  Score=79.68  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=25.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      |.-.....+.++|||||||++.|++||+.|.
T Consensus       192 E~~~~~~~~~~~DiwSlG~il~el~tg~~pf  222 (359)
T cd07876         192 EVILGMGYKENVDIWSVGCIMGELVKGSVIF  222 (359)
T ss_pred             hhccCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence            4434456778999999999999999999885

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=97.28  E-value=7.3e-05  Score=80.07  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=27.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.....+.++|||||||++.||+||+.|.
T Consensus       194 PE~~~~~~~~~~~DiwSlG~il~ell~g~~pf  225 (364)
T cd07875         194 PEVILGMGYKENVDIWSVGCIMGEMIKGGVLF  225 (364)
T ss_pred             HHHHhCCCCCchhhHHhHHHHHHHHHhCCCCC
Confidence            45555566788999999999999999999885

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=97.28  E-value=0.00016  Score=72.48  Aligned_cols=77  Identities=27%  Similarity=0.491  Sum_probs=48.7

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCccccccccc---CCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGELFLKDVLD---QRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      .+...+.++||||||+.++|+.+||=|.--     ..|+   +-...++|   |++..  .....+.   -...-.|.+.
T Consensus       250 ~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~---~Ll~~Iv~~ppP~lP~--~~fS~ef---~~FV~~CL~K  321 (364)
T KOG0581|consen  250 SGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIF---ELLCAIVDEPPPRLPE--GEFSPEF---RSFVSCCLRK  321 (364)
T ss_pred             cCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHH---HHHHHHhcCCCCCCCc--ccCCHHH---HHHHHHHhcC
Confidence            345677889999999999999999988421     1111   01233444   22221  1112223   3345679999


Q ss_pred             CCCCCCChHHHHH
Q 003931          746 TPDTRPSMRFVAQ  758 (785)
Q Consensus       746 ~p~~Rp~m~~vv~  758 (785)
                      +|.+||+.++..+
T Consensus       322 dp~~R~s~~qLl~  334 (364)
T KOG0581|consen  322 DPSERPSAKQLLQ  334 (364)
T ss_pred             CcccCCCHHHHhc
Confidence            9999999988754

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=97.27  E-value=8.6e-05  Score=76.47  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|+++|+.|..-...-.......+.+...........   -..+.++.-.|.+.+|++|
T Consensus       171 E~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~P~~R  247 (285)
T cd05605         171 EVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKF---SEAARSICRQLLTKDPGFR  247 (285)
T ss_pred             HHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCccc---CHHHHHHHHHHccCCHHHh
Confidence            4444456678999999999999999999995310000000000011111000000011   1224567889999999999


Q ss_pred             C-----ChHHH
Q 003931          751 P-----SMRFV  756 (785)
Q Consensus       751 p-----~m~~v  756 (785)
                      |     ++.++
T Consensus       248 ~~~~~~~~~~l  258 (285)
T cd05605         248 LGCRGEGAEEV  258 (285)
T ss_pred             cCCCCCCHHHH
Confidence            9     56565

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=97.27  E-value=5.7e-05  Score=77.82  Aligned_cols=83  Identities=16%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhc-cCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSL-SGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-.... ..+.....+.+...... ...   -..+.++...|.+.+|+
T Consensus       170 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~li~~~l~~~P~  245 (285)
T cd05632         170 PEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYS-AKF---SEEAKSICKMLLTKDPK  245 (285)
T ss_pred             hHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccC-ccC---CHHHHHHHHHHccCCHh
Confidence            34444556788999999999999999999995310000 00000000111100000 011   11245667789999999


Q ss_pred             CCCChHHH
Q 003931          749 TRPSMRFV  756 (785)
Q Consensus       749 ~Rp~m~~v  756 (785)
                      +||++.|+
T Consensus       246 ~R~~~~~~  253 (285)
T cd05632         246 QRLGCQEE  253 (285)
T ss_pred             HcCCCccc
Confidence            99995543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>PHA03212 serine/threonine kinase US3; Provisional

Probab=97.27  E-value=0.00014  Score=78.39  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=25.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      |+......+.++|||||||++.|++||+.|
T Consensus       253 E~~~~~~~~~~~DiwSlGvil~elltg~~p  282 (391)
T PHA03212        253 ELLARDPYGPAVDIWSAGIVLFEMATCHDS  282 (391)
T ss_pred             hhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            444445567899999999999999999987

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=97.26  E-value=0.00015  Score=74.76  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=22.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||++.|++||+.|.
T Consensus       178 ~~~~~~Dv~slG~il~~l~tg~~~~  202 (285)
T cd07861         178 RYSTPVDIWSIGTIFAEMATKKPLF  202 (285)
T ss_pred             CcCcHHHHHHHHHHHHHHHHCCCCC
Confidence            3578999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=97.26  E-value=6.8e-05  Score=78.46  Aligned_cols=72  Identities=19%  Similarity=0.303  Sum_probs=45.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      |+-.....+.++|||||||++.|++||+.|..-      ...+..       ..+.....   ...+   +.++...|.+
T Consensus       166 E~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~-------~~~~~~~~---~~~~---~~~li~~~l~  232 (316)
T cd05619         166 EILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRM-------DNPCYPRW---LTRE---AKDILVKLFV  232 (316)
T ss_pred             HHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHh-------CCCCCCcc---CCHH---HHHHHHHHhc
Confidence            444455678899999999999999999999531      111110       01111110   1111   2345667999


Q ss_pred             CCCCCCCChHH
Q 003931          745 TTPDTRPSMRF  755 (785)
Q Consensus       745 ~~p~~Rp~m~~  755 (785)
                      .+|++||++.+
T Consensus       233 ~~P~~R~~~~~  243 (316)
T cd05619         233 REPERRLGVKG  243 (316)
T ss_pred             cCHhhcCCChH
Confidence            99999999973

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=97.26  E-value=6.5e-05  Score=78.88  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.||+||+.|..-...   ......+....+.-+...    -..+.++...|.+.+|++|
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~----~~~~~~li~~~l~~~p~~R  238 (321)
T cd05603         166 EVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV---SQMYDNILHKPLQLPGGK----TVAACDLLVGLLHKDQRRR  238 (321)
T ss_pred             HHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH---HHHHHHHhcCCCCCCCCC----CHHHHHHHHHHccCCHhhc
Confidence            444445567899999999999999999999531000   000011111111111111    1234566778999999999


Q ss_pred             CChH
Q 003931          751 PSMR  754 (785)
Q Consensus       751 p~m~  754 (785)
                      |+..
T Consensus       239 ~~~~  242 (321)
T cd05603         239 LGAK  242 (321)
T ss_pred             CCCC
Confidence            9764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=97.25  E-value=7.8e-05  Score=78.20  Aligned_cols=77  Identities=21%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-....   .....+.......+. ....   .+.++.-.|.+.+|++
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~---~~~~~i~~~~~~~~~-~~~~---~~~~li~~~L~~dP~~  237 (320)
T cd05590         165 PEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENED---DLFEAILNDEVVYPT-WLSQ---DAVDILKAFMTKNPTM  237 (320)
T ss_pred             HHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH---HHHHHHhcCCCCCCC-CCCH---HHHHHHHHHcccCHHH
Confidence            35444556788999999999999999999995411100   000011111110000 0111   2335566799999999


Q ss_pred             CCCh
Q 003931          750 RPSM  753 (785)
Q Consensus       750 Rp~m  753 (785)
                      ||+.
T Consensus       238 R~~~  241 (320)
T cd05590         238 RLGS  241 (320)
T ss_pred             CCCC
Confidence            9998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=97.25  E-value=0.00019  Score=76.52  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|.......+.++|||||||++.|++||+.|.
T Consensus       186 PE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf  217 (353)
T cd07850         186 PEVILGMGYKENVDIWSVGCIMGEMIRGTVLF  217 (353)
T ss_pred             HHHHhCCCCCCchhhHhHHHHHHHHHHCCCCC
Confidence            34444556788999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=97.24  E-value=7.9e-05  Score=78.34  Aligned_cols=78  Identities=18%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|..-...   ......+.......+. ...   ..+.++.-.|.+.+|++|
T Consensus       171 E~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~---~~~~~~i~~~~~~~p~-~~~---~~~~~li~~~L~~dP~~R  243 (324)
T cd05589         171 EVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE---EEVFDSIVNDEVRYPR-FLS---REAISIMRRLLRRNPERR  243 (324)
T ss_pred             hHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCC---HHHHHHHHHHhhcCHhHc
Confidence            444445667899999999999999999999531000   0000011111111000 011   123456778999999999


Q ss_pred             CChHH
Q 003931          751 PSMRF  755 (785)
Q Consensus       751 p~m~~  755 (785)
                      |++.+
T Consensus       244 ~~~~~  248 (324)
T cd05589         244 LGSGE  248 (324)
T ss_pred             CCCCC
Confidence            96544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=97.24  E-value=0.00019  Score=72.69  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=43.5

Q ss_pred             cccceeeeehhhhhhhhCCCCCch----hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          680 DKCDVFSFGVVALEVMMGRHPGEL----ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       680 ~k~DVYSfGvvlLElltgk~p~~~----~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      .++||||+|++++||+||++|..-    +.++...+  .+-.-|.+...   ..++..   +.-..|...+|++|||+.+
T Consensus       201 ~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig--~~~~~P~ip~~---ls~~a~---~Fl~~C~~~~p~~Rpta~e  272 (313)
T KOG0198|consen  201 RESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIG--REDSLPEIPDS---LSDEAK---DFLRKCFKRDPEKRPTAEE  272 (313)
T ss_pred             ccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHh--ccCCCCCCCcc---cCHHHH---HHHHHHhhcCcccCcCHHH
Confidence            489999999999999999999431    11111000  00111222211   111222   3345799999999999999


Q ss_pred             HHHH
Q 003931          756 VAQE  759 (785)
Q Consensus       756 vv~~  759 (785)
                      ...-
T Consensus       273 LL~h  276 (313)
T KOG0198|consen  273 LLEH  276 (313)
T ss_pred             HhhC
Confidence            8653

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=97.24  E-value=7.7e-05  Score=78.91  Aligned_cols=88  Identities=19%  Similarity=0.160  Sum_probs=51.0

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhh----------hccC--cccccccccCCC-------CC-CCch----hHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELIT----------SLSG--ELFLKDVLDQRL-------PP-PTGQ----LAEA  731 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~----------~~~~--~~~~~~~~d~~l-------~~-~~~~----~~~~  731 (785)
                      ...+.++|||||||++.|+++|+.|..-..          .+..  ......+.++..       .. ....    ....
T Consensus       184 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (337)
T cd07858         184 SEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHA  263 (337)
T ss_pred             CCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccC
Confidence            347789999999999999999998853111          0000  000000111100       00 0000    0011


Q ss_pred             HHHHHHHHhhcCCCCCCCCCChHHHHHH--HHhc
Q 003931          732 VVLTINVALACTSTTPDTRPSMRFVAQE--LSAK  763 (785)
Q Consensus       732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~~--l~~~  763 (785)
                      -..+.++...|.+.+|++||+|.||++-  +..+
T Consensus       264 ~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~  297 (337)
T cd07858         264 NPLAIDLLEKMLVFDPSKRITVEEALAHPYLASL  297 (337)
T ss_pred             CHHHHHHHHHHhcCChhhccCHHHHHcCcchhhh
Confidence            2335678889999999999999999764  5544

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=97.23  E-value=0.00012  Score=77.11  Aligned_cols=79  Identities=19%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccc--ccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDV--LDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+-.....+.++|||||||++.|++||+.|..-..+.   .....+  -+..+..   ....+   +.++.-.|.+.+|+
T Consensus       165 E~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~---~~~~~~~~~~~~~p~---~~~~~---~~~li~~~L~~dP~  235 (328)
T cd05593         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE---KLFELILMEDIKFPR---TLSAD---AKSLLSGLLIKDPN  235 (328)
T ss_pred             hhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHH---HHHHHhccCCccCCC---CCCHH---HHHHHHHHcCCCHH
Confidence            4444456688999999999999999999995311100   000000  0111111   11122   23445679999999


Q ss_pred             CCC-----ChHHHHH
Q 003931          749 TRP-----SMRFVAQ  758 (785)
Q Consensus       749 ~Rp-----~m~~vv~  758 (785)
                      +||     +..|+.+
T Consensus       236 ~R~~~~~~~~~~il~  250 (328)
T cd05593         236 KRLGGGPDDAKEIMR  250 (328)
T ss_pred             HcCCCCCCCHHHHhc
Confidence            997     7777754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=97.23  E-value=7.9e-05  Score=77.98  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-.........+ ..-.+.....   ...+   +.++.-.|.+.+|++
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~-~~~~~~~~~~---~~~~---~~~li~~~l~~dP~~  237 (316)
T cd05620         165 PEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESI-RVDTPHYPRW---ITKE---SKDILEKLFERDPTR  237 (316)
T ss_pred             HHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHH-HhCCCCCCCC---CCHH---HHHHHHHHccCCHHH
Confidence            35544556788999999999999999999995310000000000 0001111111   1112   234556799999999


Q ss_pred             CCChHH
Q 003931          750 RPSMRF  755 (785)
Q Consensus       750 Rp~m~~  755 (785)
                      ||++.+
T Consensus       238 R~~~~~  243 (316)
T cd05620         238 RLGVVG  243 (316)
T ss_pred             cCCChH
Confidence            999853

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.22  E-value=0.00015  Score=77.74  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCC-C-chhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPP-T-GQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~-~-~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |.....-.|+.||+||+||||.||+||+.|..     ..+.. .++. .++..+ . ....++..   .+--.|.+.+|.
T Consensus       483 Evl~~~~yt~acD~WSLGvlLy~ML~G~tp~~-----~~P~~-~ei~-~~i~~~~~s~~vS~~AK---dLl~~LL~~dP~  552 (612)
T KOG0603|consen  483 EVLAIQEYTEACDWWSLGVLLYEMLTGRTLFA-----AHPAG-IEIH-TRIQMPKFSECVSDEAK---DLLQQLLQVDPA  552 (612)
T ss_pred             hhhccCCCCcchhhHHHHHHHHHHHhCCCccc-----cCCch-HHHH-HhhcCCccccccCHHHH---HHHHHhccCChh
Confidence            55556677899999999999999999998842     01110 0111 111100 0 00011111   233457899999


Q ss_pred             CCCChHHHH
Q 003931          749 TRPSMRFVA  757 (785)
Q Consensus       749 ~Rp~m~~vv  757 (785)
                      +||+|.++-
T Consensus       553 ~Rl~~~~i~  561 (612)
T KOG0603|consen  553 LRLGADEIG  561 (612)
T ss_pred             hCcChhhhc
Confidence            999999874

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=97.22  E-value=0.0002  Score=75.64  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhh------ccC--------------ccccccccc---CCCCCCCchh-HHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITS------LSG--------------ELFLKDVLD---QRLPPPTGQL-AEA  731 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~------~~~--------------~~~~~~~~d---~~l~~~~~~~-~~~  731 (785)
                      ...+.++|||||||++.|+++|+.|..-..+      +..              .....+.++   ..-....... ...
T Consensus       187 ~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (334)
T cd07855         187 PEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKA  266 (334)
T ss_pred             cccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccC
Confidence            3568899999999999999999998531100      000              000011111   0000000000 001


Q ss_pred             HHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          732 VVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      -..+..+...|.+.+|++||++.+|++
T Consensus       267 ~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         267 SPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            133557788999999999999999876

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PHA03209 serine/threonine kinase US3; Provisional

Probab=97.22  E-value=0.00012  Score=77.98  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      |+-.....+.++|||||||+++|++++.+|
T Consensus       226 E~~~~~~~~~~~DiwSlGvvl~ell~~~~~  255 (357)
T PHA03209        226 EVLARDKYNSKADIWSAGIVLFEMLAYPST  255 (357)
T ss_pred             eecCCCCCCchhhHHHHHHHHHHHHHcCCc
Confidence            443445678999999999999999997765

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=97.22  E-value=6.6e-05  Score=77.59  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|..-...   ......+......-+... ..   .+.++.-.|.+.+|.+|
T Consensus       168 E~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~-~~---~~~~li~~~l~~dp~~R  240 (291)
T cd05612         168 EVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP---FGIYEKILAGKLEFPRHL-DL---YAKDLIKKLLVVDRTRR  240 (291)
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCcCCCccC-CH---HHHHHHHHHcCCCHHHc
Confidence            444445567899999999999999999999531000   000111111111100000 11   23456678999999999


Q ss_pred             CC
Q 003931          751 PS  752 (785)
Q Consensus       751 p~  752 (785)
                      |+
T Consensus       241 ~~  242 (291)
T cd05612         241 LG  242 (291)
T ss_pred             cC
Confidence            95

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=97.21  E-value=0.00015  Score=76.82  Aligned_cols=82  Identities=21%  Similarity=0.278  Sum_probs=47.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc---hhhhcc-------C--cccc--------cccccCCCCCCCchhHH----HH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE---LITSLS-------G--ELFL--------KDVLDQRLPPPTGQLAE----AV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~---~~~~~~-------~--~~~~--------~~~~d~~l~~~~~~~~~----~~  732 (785)
                      ..+.++|||||||++.|++||+.|..   ....+.       .  +...        ...++...........+    .-
T Consensus       192 ~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  271 (343)
T cd07851         192 HYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGAN  271 (343)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCC
Confidence            46789999999999999999998842   000000       0  0000        00000000000000000    11


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|.+.+|++||++.||.+
T Consensus       272 ~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         272 PLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            24557788999999999999999865

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=97.20  E-value=0.00023  Score=74.53  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=22.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||++.|++||+.|.
T Consensus       192 ~~~~~~Dv~slG~~l~~l~~~~~~~  216 (316)
T cd07842         192 HYTKAIDIWAIGCIFAELLTLEPIF  216 (316)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCC
Confidence            3578999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=97.20  E-value=9e-05  Score=79.61  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.||+||+.|.+
T Consensus       181 ~~~~~~DiwslG~il~el~~g~~pf~  206 (372)
T cd07853         181 HYTSAVDIWSVGCIFAELLGRRILFQ  206 (372)
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCCCC
Confidence            35789999999999999999998853

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=97.18  E-value=0.0002  Score=75.63  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=42.9

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccc-ccc--ccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC---
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFL-KDV--LDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP---  751 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~-~~~--~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp---  751 (785)
                      .+.++|||||||++.|++||+.|.+........... ..+  .++.+....   ..   .+.++.-.|.+.+|++||   
T Consensus       184 ~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~li~~~l~~dp~~R~~~~  257 (332)
T cd05614         184 HGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFI---GP---EAQDLLHKLLRKDPKKRLGAG  257 (332)
T ss_pred             CCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCC---CH---HHHHHHHHHcCCCHHHcCCCC
Confidence            567899999999999999999995311000000000 001  122221111   11   233556689999999999   


Q ss_pred             --ChHHHH
Q 003931          752 --SMRFVA  757 (785)
Q Consensus       752 --~m~~vv  757 (785)
                        +..++.
T Consensus       258 ~~~~~~~l  265 (332)
T cd05614         258 PQGASEIK  265 (332)
T ss_pred             CCCHHHHH
Confidence              455554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=97.18  E-value=0.00012  Score=75.35  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc---CCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD---QRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+-.....+.++|||||||++.|++||+.|.+....-.........++   .....   ..   -..+.++.-.|.+.+
T Consensus       170 PE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~li~~~l~~~  243 (285)
T cd05630         170 PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSE---KF---SPDARSLCKMLLCKD  243 (285)
T ss_pred             hHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhhhcCc---cC---CHHHHHHHHHHhhcC
Confidence            3555556678899999999999999999999641100000000011111   01110   01   112345667899999


Q ss_pred             CCCCCC-----hHHHHH
Q 003931          747 PDTRPS-----MRFVAQ  758 (785)
Q Consensus       747 p~~Rp~-----m~~vv~  758 (785)
                      |++||+     +.|+.+
T Consensus       244 p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         244 PKERLGCQGGGAREVKE  260 (285)
T ss_pred             HHHccCCCCCchHHHHc
Confidence            999999     667654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=1.4e-05  Score=76.11  Aligned_cols=100  Identities=27%  Similarity=0.289  Sum_probs=74.3

Q ss_pred             CCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCC-hhccCCCCCCE
Q 003931          221 LSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP-SEIEKLTSLEN  299 (785)
Q Consensus       221 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~  299 (785)
                      +.+.+.|++.+|.+. +|.  +...++.|++|.|+-|+++..-|  +..|++|++|+|..|.|..... ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            456677888888887 443  36788999999999999986544  7889999999999998864321 33578899999


Q ss_pred             EECcCCcccccCCcc-----CcCCCCCCEEE
Q 003931          300 LDLSGNQLSGTIPPT-----LWNLTNLLSLQ  325 (785)
Q Consensus       300 L~Ls~n~l~~~~p~~-----l~~l~~L~~L~  325 (785)
                      |+|..|.-.|.-+..     +..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998877665433     44566776664

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=97.16  E-value=8.1e-05  Score=78.18  Aligned_cols=81  Identities=21%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|..-...   ......+.......+. ....++   .++.-.|.+.+|++|
T Consensus       165 E~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~~~~~~~~~~p~-~~~~~~---~~li~~~L~~dP~~R  237 (323)
T cd05595         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---ERLFELILMEEIRFPR-TLSPEA---KSLLAGLLKKDPKQR  237 (323)
T ss_pred             ccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHhcCCCCCCC-CCCHHH---HHHHHHHccCCHHHh
Confidence            433345567899999999999999999999531000   0000011111110000 111122   344557999999999


Q ss_pred             C-----ChHHHHH
Q 003931          751 P-----SMRFVAQ  758 (785)
Q Consensus       751 p-----~m~~vv~  758 (785)
                      |     ++.++.+
T Consensus       238 ~~~~~~~~~~~l~  250 (323)
T cd05595         238 LGGGPSDAKEVME  250 (323)
T ss_pred             CCCCCCCHHHHHc
Confidence            8     7777654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.15  E-value=0.00024  Score=72.68  Aligned_cols=75  Identities=24%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             cccccceeeeehhhhhhhhCCCCCc-------hhhhccCcc-c-ccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGEL-F-LKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~-~-~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      ..-|+|+|||||-.+|+.+|..|..       +..-..... . ....+|..-....      -..+-+..-.|.+.+|+
T Consensus       209 YdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~------~ksf~e~i~~CL~kDP~  282 (516)
T KOG0582|consen  209 YDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKF------SKSFREMIALCLVKDPS  282 (516)
T ss_pred             ccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhh------cHHHHHHHHHHhhcCcc
Confidence            3579999999999999999999953       111111100 0 0111111110000      01344556679999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +|||..+..+
T Consensus       283 kRptAskLlk  292 (516)
T KOG0582|consen  283 KRPTASKLLK  292 (516)
T ss_pred             cCCCHHHHhc
Confidence            9999998754

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=97.14  E-value=0.00013  Score=76.79  Aligned_cols=80  Identities=19%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++|||||||++.|++||+.|..-....   .....+.+..+.-+... ..   .+.++.-.|.+.+|++|
T Consensus       185 E~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~---~~~~~i~~~~~~~p~~~-~~---~~~~li~~~L~~dP~~R  257 (329)
T PTZ00263        185 EVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPF---RIYEKILAGRLKFPNWF-DG---RARDLVKGLLQTDHTKR  257 (329)
T ss_pred             HHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHH---HHHHHHhcCCcCCCCCC-CH---HHHHHHHHHhhcCHHHc
Confidence            4444555678999999999999999999995310000   00011111111111001 11   23456778999999999


Q ss_pred             CC-----hHHHH
Q 003931          751 PS-----MRFVA  757 (785)
Q Consensus       751 p~-----m~~vv  757 (785)
                      |+     +.|+.
T Consensus       258 ~~~~~~~~~~ll  269 (329)
T PTZ00263        258 LGTLKGGVADVK  269 (329)
T ss_pred             CCCCCCCHHHHh
Confidence            96     55554

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=97.14  E-value=0.00015  Score=74.65  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             cccccceeeeehhhhhhhhCCCCCc
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      .+.++|||||||+++|++||+.|..
T Consensus       178 ~~~~~Dv~slG~~l~~l~~g~~~~~  202 (284)
T cd07836         178 YSTSIDIWSVGCIMAEMITGRPLFP  202 (284)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999998853

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=97.14  E-value=0.00012  Score=74.55  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhcc-CcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLS-GELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++|||||||++.|++||+.|..-...-. ................. ....   .+.++...|.+.+|.+
T Consensus       176 E~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~  251 (267)
T PHA03390        176 EKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIK-NVSK---NANDFVQSMLKYNINY  251 (267)
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCccc-ccCH---HHHHHHHHHhccChhh
Confidence            44444556789999999999999999999963110000 00000000011110000 0111   2334456899999999


Q ss_pred             CCC-hHHHH
Q 003931          750 RPS-MRFVA  757 (785)
Q Consensus       750 Rp~-m~~vv  757 (785)
                      ||+ +.++.
T Consensus       252 R~~~~~~~l  260 (267)
T PHA03390        252 RLTNYNEII  260 (267)
T ss_pred             CCchHHHHh
Confidence            995 67764

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=97.13  E-value=0.0001  Score=77.55  Aligned_cols=76  Identities=14%  Similarity=0.306  Sum_probs=45.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||++.|++||+.|.+-...   ......+.+....-+.... .   .+.++...|.+.+|++|
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~---~~~~~~i~~~~~~~~~~~~-~---~~~~li~~~l~~~P~~R  243 (324)
T cd05587         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE---DELFQSIMEHNVSYPKSLS-K---EAVSICKGLLTKHPAKR  243 (324)
T ss_pred             hhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCCCCC-H---HHHHHHHHHhhcCHHHc
Confidence            444445567899999999999999999999531100   0000111111111010011 1   23456678999999999


Q ss_pred             CCh
Q 003931          751 PSM  753 (785)
Q Consensus       751 p~m  753 (785)
                      |+.
T Consensus       244 ~~~  246 (324)
T cd05587         244 LGC  246 (324)
T ss_pred             CCC
Confidence            986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PHA03207 serine/threonine kinase US3; Provisional

Probab=97.12  E-value=0.00027  Score=76.43  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.....+.++|||||||++.||+||+.|.
T Consensus       256 PE~~~~~~~~~~~DvwslGvil~el~~g~~pf  287 (392)
T PHA03207        256 PELLALDPYCAKTDIWSAGLVLFEMSVKNVTL  287 (392)
T ss_pred             HhHhcCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            34444556788999999999999999999995

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=97.12  E-value=0.0002  Score=76.08  Aligned_cols=83  Identities=24%  Similarity=0.350  Sum_probs=57.6

Q ss_pred             cccccccceeeeehhhhhhhh-CCCCCchhhhccCccccccccc-CCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          676 MRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLD-QRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      .|.|+.+|||=|||-+.|+++ |.+|..+|   ...+-+..+-. .++.    -...|--.+..+.-.|++.+|.+||..
T Consensus       567 RrFTtASDVWMFgVCmWEIl~lGvkPfqgv---kNsDVI~~iEnGeRlP----~P~nCPp~LYslmskcWayeP~kRPrf  639 (974)
T KOG4257|consen  567 RRFTTASDVWMFGVCMWEILSLGVKPFQGV---KNSDVIGHIENGERLP----CPPNCPPALYSLMSKCWAYEPSKRPRF  639 (974)
T ss_pred             hcccchhhHHHHHHHHHHHHHhcCCccccc---cccceEEEecCCCCCC----CCCCCChHHHHHHHHHhccCcccCCcH
Confidence            578999999999999999987 99996433   22211111111 1221    112344556677889999999999999


Q ss_pred             HHHHHHHHhccc
Q 003931          754 RFVAQELSAKTQ  765 (785)
Q Consensus       754 ~~vv~~l~~~~~  765 (785)
                      .++++.|.+|.+
T Consensus       640 tei~~~lsdv~q  651 (974)
T KOG4257|consen  640 TEIKAILSDVLQ  651 (974)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=97.11  E-value=0.00017  Score=73.97  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhh-ccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITS-LSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~-~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+..+...+.++|||||||++.|++||+.|..-... .........+.  ......   ....+   +.++.-.|.+.+|
T Consensus       164 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~li~~~l~~~p  237 (277)
T cd05577         164 EVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPD---KFSPE---AKDLCEALLQKDP  237 (277)
T ss_pred             HHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCc---cCCHH---HHHHHHHHccCCh
Confidence            444445577899999999999999999999531111 10000000011  001111   01112   3355667899999


Q ss_pred             CCCCChHH-HHHHH
Q 003931          748 DTRPSMRF-VAQEL  760 (785)
Q Consensus       748 ~~Rp~m~~-vv~~l  760 (785)
                      ++||+.++ .+..+
T Consensus       238 ~~R~~~~~~~~~~l  251 (277)
T cd05577         238 EKRLGCRGGSADEV  251 (277)
T ss_pred             hHccCCCcccHHHH
Confidence            99996666 44444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=97.10  E-value=0.00019  Score=73.89  Aligned_cols=81  Identities=14%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             cccccceeeeehhhhhhhhCCCCCc----------hhhhccCc---cc--c------cccccCCCCCCC-ch-hHHHHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGE---LF--L------KDVLDQRLPPPT-GQ-LAEAVVL  734 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~---~~--~------~~~~d~~l~~~~-~~-~~~~~~~  734 (785)
                      .+.++||||+|+++.|++||+.|..          ....+...   .+  .      ..+..+.-.... .. ..+.-..
T Consensus       178 ~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (286)
T cd07832         178 YDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPE  257 (286)
T ss_pred             CCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHH
Confidence            4679999999999999999976542          01111000   00  0      000000000000 00 0011134


Q ss_pred             HHHHHhhcCCCCCCCCCChHHHHH
Q 003931          735 TINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       735 ~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++.-.|.+.+|++||+|.+|++
T Consensus       258 ~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         258 ALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             HHHHHHHHhccChhhCCCHHHHhh
Confidence            557778899999999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=97.09  E-value=0.00014  Score=75.99  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||+++|++||+.|.
T Consensus       181 ~~~~~~DiwslG~il~el~tg~~pf  205 (309)
T cd07872         181 EYSTQIDMWGVGCIFFEMASGRPLF  205 (309)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            4678999999999999999999885

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=97.09  E-value=0.00011  Score=77.42  Aligned_cols=83  Identities=13%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......+......... ....+   +.++--.|.+.+|.+
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~~~-~~~~~---~~~li~~~l~~~p~~  237 (325)
T cd05602         165 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT---AEMYDNILNKPLQLKP-NITNS---ARHLLEGLLQKDRTK  237 (325)
T ss_pred             HHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH---HHHHHHHHhCCcCCCC-CCCHH---HHHHHHHHcccCHHH
Confidence            3444455677899999999999999999999530000   0000011111110000 11112   234445789999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||+..+.+.+
T Consensus       238 R~~~~~~~~~  247 (325)
T cd05602         238 RLGAKDDFME  247 (325)
T ss_pred             CCCCCCCHHH
Confidence            9988754443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=97.08  E-value=0.00019  Score=72.91  Aligned_cols=82  Identities=15%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++||||||+++.|++||+.|..-... .......++.+..........  .-..+..+...|.+.+|++|
T Consensus       162 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~p~~R  238 (262)
T cd05572         162 EIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE-DPMEIYNDILKGNGKLEFPNY--IDKAAKDLIKQLLRRNPEER  238 (262)
T ss_pred             hHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC-CHHHHHHHHhccCCCCCCCcc--cCHHHHHHHHHHccCChhhC
Confidence            433345567899999999999999999999531110 000001111210000000000  01235567788999999999


Q ss_pred             CChHH
Q 003931          751 PSMRF  755 (785)
Q Consensus       751 p~m~~  755 (785)
                      |+|.+
T Consensus       239 ~~~~~  243 (262)
T cd05572         239 LGNLK  243 (262)
T ss_pred             cCCcc
Confidence            99543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=97.07  E-value=0.00016  Score=76.37  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccCc--c-cccccccCCC----CCCCchhH----HHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGE--L-FLKDVLDQRL----PPPTGQLA----EAVVLT  735 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~--~-~~~~~~d~~l----~~~~~~~~----~~~~~~  735 (785)
                      ..+.++|||||||+++|++||+.|..          +...+...  . +....-.+..    ........    ..-..+
T Consensus       210 ~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (335)
T PTZ00024        210 KYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDA  289 (335)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHH
Confidence            35789999999999999999998853          11111110  0 0000000000    00000000    011235


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHH
Q 003931          736 INVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .++...|.+.+|++||++.||+.
T Consensus       290 ~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        290 IDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHHHHHcCCCchhccCHHHHhc
Confidence            57788999999999999999975

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=97.07  E-value=0.00021  Score=73.89  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++|+|||||++.|++||+.|.
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~~f  207 (293)
T cd07843         184 YSTAIDMWSVGCIFAELLTKKPLF  207 (293)
T ss_pred             ccchhhHHHHHHHHHHHHhCCCCC
Confidence            578999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=97.07  E-value=0.00031  Score=74.59  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=22.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++|||||||++.|+++|+.|.
T Consensus       192 ~~~~~~DiwslG~il~el~~g~~pf  216 (343)
T cd07878         192 HYNQTVDIWSVGCIMAELLKGKALF  216 (343)
T ss_pred             cCCchhhhHhHHHHHHHHHHCCCCC
Confidence            4678999999999999999999885

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=97.07  E-value=0.00023  Score=75.12  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=23.9

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.++|||||||++.||+||+.|..
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~Pf~  210 (330)
T cd05601         184 GTYGVECDWWSLGVIAYEMIYGRSPFH  210 (330)
T ss_pred             CCCCCcceeecccceeeeeccCCCCCC
Confidence            456789999999999999999999953

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=97.06  E-value=0.00021  Score=75.22  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch----------hhhccC--cccccccccCC-------CCC-CCchhHH----HH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG--ELFLKDVLDQR-------LPP-PTGQLAE----AV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~--~~~~~~~~d~~-------l~~-~~~~~~~----~~  732 (785)
                      ..+.++|||||||++.|++||+.|...          .++...  +.....+.+..       +.. ......+    .-
T Consensus       182 ~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (328)
T cd07856         182 KYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNAD  261 (328)
T ss_pred             CcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCC
Confidence            467899999999999999999988531          111110  00000111110       000 0000000    11


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQE  759 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~~  759 (785)
                      ..+.++...|.+.+|++||++.+|+..
T Consensus       262 ~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         262 PSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            245567788999999999999998653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=97.05  E-value=0.0002  Score=75.57  Aligned_cols=90  Identities=18%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccC--cc--------cccccccCCCCCCCchhH----HHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG--EL--------FLKDVLDQRLPPPTGQLA----EAV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~--~~--------~~~~~~d~~l~~~~~~~~----~~~  732 (785)
                      ..+.++||||||+++.|++||+.|..          +......  ..        ...+.+...-........    ..-
T Consensus       183 ~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (330)
T cd07834         183 RYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGAS  262 (330)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCC
Confidence            57789999999999999999998853          1111000  00        000000000000000000    001


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH--HHHhcccc
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ--ELSAKTQA  766 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~~~  766 (785)
                      ..+.++...|.+.+|++||++.++++  .+++++..
T Consensus       263 ~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         263 PEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence            23457788999999999999999987  46666554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=97.03  E-value=0.00052  Score=73.94  Aligned_cols=84  Identities=24%  Similarity=0.364  Sum_probs=46.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc----CCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD----QRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d----~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......+.+    ....... ....+...++. .+.|...
T Consensus       217 PE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~-~~s~~~~dli~-~ll~~~~  291 (381)
T cd05626         217 PEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTP---TETQLKVINWENTLHIPPQV-KLSPEAVDLIT-KLCCSAE  291 (381)
T ss_pred             HHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCH---HHHHHHHHccccccCCCCCC-CCCHHHHHHHH-HHccCcc
Confidence            3444445568899999999999999999999531100   000001111    1111100 01112222221 2458888


Q ss_pred             CCCCCCChHHHHH
Q 003931          746 TPDTRPSMRFVAQ  758 (785)
Q Consensus       746 ~p~~Rp~m~~vv~  758 (785)
                      +|..||+..||.+
T Consensus       292 ~~~~R~~~~~~l~  304 (381)
T cd05626         292 ERLGRNGADDIKA  304 (381)
T ss_pred             cccCCCCHHHHhc
Confidence            8888999999865

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=97.03  E-value=0.00013  Score=76.67  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=47.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-...   +.....+......-+. ....+   +.++.-.|.+.+|++
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~~~~---~~~li~~~L~~dP~~  237 (325)
T cd05594         165 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKLFELILMEEIRFPR-TLSPE---AKSLLSGLLKKDPKQ  237 (325)
T ss_pred             HHHHccCCCCCccccccccceeeeeccCCCCCCCCCH---HHHHHHHhcCCCCCCC-CCCHH---HHHHHHHHhhcCHHH
Confidence            3444455678899999999999999999999531000   0000001001110000 01112   234556799999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      ||     ++.++.+
T Consensus       238 R~~~~~~~~~~il~  251 (325)
T cd05594         238 RLGGGPDDAKEIMQ  251 (325)
T ss_pred             hCCCCCCCHHHHhc
Confidence            97     7888754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>PHA03211 serine/threonine kinase US3; Provisional

Probab=97.03  E-value=0.00044  Score=75.71  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=26.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      .|+.....++.++|||||||+++|+++|+.|
T Consensus       331 PE~~~~~~~~~~sDvwSlGviL~El~~g~~~  361 (461)
T PHA03211        331 PEVLAGDPYTPSVDIWSAGLVIFEAAVHTAS  361 (461)
T ss_pred             HHHHcCCCCCchHHHHHHHHHHHHHHHcCCC
Confidence            4555566788999999999999999998765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.02  E-value=1.6e-05  Score=80.37  Aligned_cols=135  Identities=19%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             CCcccCeeecccccc-ccCCchhc-cCCCCCCEEEccCCCCccccCccc-cCCCCCCCEEEeecCcCcc--cCCccCcCC
Q 003931          196 LCTNLSYLALAVNQL-SGGLPLSL-SNLSKLNDLGLSDNFLSGEISANL-IGNWTELESLQIQNNSFMG--NIPPEIGLL  270 (785)
Q Consensus       196 ~l~~L~~L~l~~n~i-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~--~~~~~~~~l  270 (785)
                      .+..|+++..+++.- +...-.++ .+..+|+.|.++.++--+..-... -.+++.|+.+++..+....  .+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            345566666655432 21212222 345667777777665322221111 2356677777777664321  122222456


Q ss_pred             CCCcEEECcCcccc-cc----CChhccCCCCCCEEECcCCcccc-cCCccCcCCCCCCEEEccccc
Q 003931          271 TKLQYLFLYRNNFS-GP----IPSEIEKLTSLENLDLSGNQLSG-TIPPTLWNLTNLLSLQLFSNN  330 (785)
Q Consensus       271 ~~L~~L~L~~n~l~-~~----~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~  330 (785)
                      +.|+++.++++... ..    ....-.....|+.+.|++++... ..-+.+..+++|+.+++.+++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            77777777766542 11    01112335567777777775432 223345556666666665554

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=97.02  E-value=0.00017  Score=76.42  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.|+|||||||++.|++||+.|..
T Consensus       194 ~~~~~~~DiwSlGvil~el~~g~~pf~  220 (342)
T cd07854         194 NNYTKAIDMWAAGCIFAEMLTGKPLFA  220 (342)
T ss_pred             cccCchhhHHHHHHHHHHHHhCCCCCC
Confidence            346789999999999999999999863

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=97.00  E-value=0.00035  Score=74.69  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=27.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.++|||||||++.||+||+.|..
T Consensus       205 PE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~  237 (363)
T cd05628         205 PEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (363)
T ss_pred             HHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCC
Confidence            354445567889999999999999999999953

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=96.99  E-value=0.00016  Score=75.95  Aligned_cols=78  Identities=13%  Similarity=0.281  Sum_probs=46.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|.+-...   ......+.......+....    ..+.++...|.+.+|++
T Consensus       170 PE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~---~~~~~~i~~~~~~~p~~~~----~~~~~li~~~l~~~p~~  242 (323)
T cd05615         170 PEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE---DELFQSIMEHNVSYPKSLS----KEAVSICKGLMTKHPSK  242 (323)
T ss_pred             HHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCccCC----HHHHHHHHHHcccCHhh
Confidence            3555555678899999999999999999999531100   0001111111111111011    12345667899999999


Q ss_pred             CCChH
Q 003931          750 RPSMR  754 (785)
Q Consensus       750 Rp~m~  754 (785)
                      |++..
T Consensus       243 R~~~~  247 (323)
T cd05615         243 RLGCG  247 (323)
T ss_pred             CCCCC
Confidence            99853

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=96.94  E-value=0.00025  Score=74.80  Aligned_cols=75  Identities=21%  Similarity=0.292  Sum_probs=42.6

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      .+.++|||||||++.||+||+.|..-....   .....+.  +..+...  ...++   +.++.-.|.+.+|++||++.+
T Consensus       174 ~~~~~DvwslGvil~elltG~~Pf~~~~~~---~~~~~i~~~~~~~~~~--~~~~~---~~~li~~~L~~~P~~R~~~~~  245 (330)
T cd05586         174 YTKHVDFWSLGVLVFEMCCGWSPFYAEDTQ---QMYRNIAFGKVRFPKN--VLSDE---GRQFVKGLLNRNPQHRLGAHR  245 (330)
T ss_pred             CCCccceeccccEEEEeccCCCCCCCCCHH---HHHHHHHcCCCCCCCc--cCCHH---HHHHHHHHcCCCHHHCCCCCC
Confidence            578999999999999999999995311000   0000000  1111110  01111   234556799999999996554


Q ss_pred             HHHHH
Q 003931          756 VAQEL  760 (785)
Q Consensus       756 vv~~l  760 (785)
                      .+..+
T Consensus       246 ~~~~l  250 (330)
T cd05586         246 DAVEL  250 (330)
T ss_pred             CHHHH
Confidence            44333

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=96.93  E-value=0.00022  Score=71.77  Aligned_cols=78  Identities=18%  Similarity=0.197  Sum_probs=46.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |.......+.++||||||+++.|+++|+.|.+-..-   ......+.......+. ...   ..+.++.-.|+..+|++|
T Consensus       163 e~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~-~~~---~~l~~~i~~~l~~~p~~R  235 (250)
T cd05123         163 EVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR---KEIYEKILKDPLRFPE-FLS---PEARDLISGLLQKDPTKR  235 (250)
T ss_pred             HHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHhcCCCCCCC-CCC---HHHHHHHHHHhcCCHhhC
Confidence            333344567899999999999999999999641110   0000111111111110 101   223466778999999999


Q ss_pred             CChHH
Q 003931          751 PSMRF  755 (785)
Q Consensus       751 p~m~~  755 (785)
                      |++.+
T Consensus       236 ~~~~~  240 (250)
T cd05123         236 LGSGG  240 (250)
T ss_pred             CCccc
Confidence            99965

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=96.93  E-value=0.00052  Score=70.37  Aligned_cols=76  Identities=13%  Similarity=0.112  Sum_probs=46.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCc--ccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC---
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGE--LFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP---  751 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp---  751 (785)
                      ..+.++|||||||++.|++||+.|.+-.......  .......++.+....      -..+.++.-.|...+|++||   
T Consensus       172 ~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~~~~li~~~l~~~p~~R~~~~  245 (278)
T cd05606         172 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSF------SPELRSLLEGLLQRDVNRRLGCL  245 (278)
T ss_pred             CCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcC------CHHHHHHHHHHhhcCHHhccCCC
Confidence            4678999999999999999999996311100000  000011122221111      12344556789999999999   


Q ss_pred             --ChHHHHH
Q 003931          752 --SMRFVAQ  758 (785)
Q Consensus       752 --~m~~vv~  758 (785)
                        ++.|+.+
T Consensus       246 ~~~~~~ll~  254 (278)
T cd05606         246 GRGAQEVKE  254 (278)
T ss_pred             CCCHHHHHh
Confidence              8888863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=96.91  E-value=0.00044  Score=72.42  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=22.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++||||+||++.|++||+.|.
T Consensus       192 ~~~~~~DiwslG~il~el~~g~~~f  216 (317)
T cd07868         192 HYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             CcCchhhHHHHHHHHHHHHhCCCCc
Confidence            4678999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=96.90  E-value=0.00043  Score=71.96  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++||||+||++.|++||+.|.+
T Consensus       180 ~~~~~~DiwslG~il~~l~~g~~pf~  205 (303)
T cd07869         180 EYSTCLDMWGVGCIFVEMIQGVAAFP  205 (303)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            35678999999999999999999953

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=96.90  E-value=0.00036  Score=72.85  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++|||||||++.|++||+.|.
T Consensus       186 ~~~~~DvwslG~il~el~~g~~~f  209 (309)
T cd07845         186 YTTAIDMWAVGCILAELLAHKPLL  209 (309)
T ss_pred             cCchHHHHHHHHHHHHHHhCCCCC
Confidence            578999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.0006  Score=65.31  Aligned_cols=62  Identities=26%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCC--CCcccCCccCCCCCCccEEECCCCCCc
Q 003931           27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN--ELTLEFPSFILTCRNLTYLDLSLNKLS   90 (785)
Q Consensus        27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~   90 (785)
                      .+..|+.+++.+..++...  .|..+++|+.|.++.|  .+.+..+-....+++|+++++++|+|.
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3344444444444333322  3444455555555555  333333333333445555555555443

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=96.88  E-value=0.0002  Score=73.49  Aligned_cols=77  Identities=13%  Similarity=0.204  Sum_probs=46.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |.......+.++||||||+++.|++||+.|..-.....   ....+.+.....+. ..   -..+..+...|.+.+|++|
T Consensus       192 e~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~-~~---~~~~~~li~~~l~~~p~~R  264 (280)
T cd05581         192 ELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL---TFQKILKLEYSFPP-NF---PPDAKDLIEKLLVLDPQDR  264 (280)
T ss_pred             HHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH---HHHHHHhcCCCCCC-cc---CHHHHHHHHHHhcCCHhhC
Confidence            43344557889999999999999999999954111000   00111111111000 00   1224567788999999999


Q ss_pred             CChH
Q 003931          751 PSMR  754 (785)
Q Consensus       751 p~m~  754 (785)
                      |++.
T Consensus       265 ~~~~  268 (280)
T cd05581         265 LGVN  268 (280)
T ss_pred             CCcc
Confidence            9993

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=96.88  E-value=0.00048  Score=77.50  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc--hhhhc---cCcc----cccccccCCCCCCCchhHH----HHHHHHHHHhhcC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE--LITSL---SGEL----FLKDVLDQRLPPPTGQLAE----AVVLTINVALACT  743 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~--~~~~~---~~~~----~~~~~~d~~l~~~~~~~~~----~~~~~~~ial~C~  743 (785)
                      ..+.|+||||||||++||++|.-|.+  +..+.   ...+    .....+++..........+    .-....++.-.|.
T Consensus       355 ~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL  434 (566)
T PLN03225        355 NLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMM  434 (566)
T ss_pred             cCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHc
Confidence            35678999999999999999887754  11111   0000    0011111111000000000    0011235677899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.|+.+
T Consensus       435 ~~dP~kR~ta~e~L~  449 (566)
T PLN03225        435 RFKGRQRISAKAALA  449 (566)
T ss_pred             cCCcccCCCHHHHhC
Confidence            999999999999865

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=96.87  E-value=0.00034  Score=73.90  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.||+||+.|..-....   .....+.+....-+. .....   +.++.-.|.+.+|++
T Consensus       197 PE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~---~~~~~i~~~~~~~p~-~~~~~---~~~li~~~l~~dp~~  269 (340)
T PTZ00426        197 PEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL---LIYQKILEGIIYFPK-FLDNN---CKHLMKKLLSHDLTK  269 (340)
T ss_pred             HHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH---HHHHHHhcCCCCCCC-CCCHH---HHHHHHHHcccCHHH
Confidence            35444555678999999999999999999995311000   000111111110000 11111   234566799999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      |+     ++.++.+
T Consensus       270 R~~~~~~~~~~~~~  283 (340)
T PTZ00426        270 RYGNLKKGAQNVKE  283 (340)
T ss_pred             cCCCCCCCHHHHHc
Confidence            95     6777644

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=96.85  E-value=0.00031  Score=72.08  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccc---cccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC-
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKD---VLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP-  751 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~---~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp-  751 (785)
                      ...+.++|||||||++.|++||+.|..-.... ......+   ..++.+..   ....+   +.++...|...+|++|| 
T Consensus       171 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~---~~~li~~~l~~~p~~R~~  243 (279)
T cd05633         171 TAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK-DKHEIDRMTLTVNVELPD---SFSPE---LKSLLEGLLQRDVSKRLG  243 (279)
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCcCCCCCc-CHHHHHHHhhcCCcCCcc---ccCHH---HHHHHHHHhcCCHHHhcC
Confidence            34678999999999999999999995311100 0000000   11112211   11122   33445689999999999 


Q ss_pred             ----ChHHHHH
Q 003931          752 ----SMRFVAQ  758 (785)
Q Consensus       752 ----~m~~vv~  758 (785)
                          +++|+.+
T Consensus       244 ~~~~~~~~~~~  254 (279)
T cd05633         244 CLGRGAQEVKE  254 (279)
T ss_pred             CCCCCHHHHHh
Confidence                5888765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>PTZ00036 glycogen synthase kinase; Provisional

Probab=96.85  E-value=0.00064  Score=74.55  Aligned_cols=82  Identities=17%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-------hhhhcc--Ccccc--cccccCC-----CCCCCch-hHH-----HHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLS--GELFL--KDVLDQR-----LPPPTGQ-LAE-----AVVL  734 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~--~~~~~--~~~~d~~-----l~~~~~~-~~~-----~~~~  734 (785)
                      ..+.++|||||||++.||+||+.|..       +...+.  .....  ....++.     ....... ...     .-..
T Consensus       247 ~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~  326 (440)
T PTZ00036        247 NYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDD  326 (440)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHH
Confidence            56889999999999999999998853       111100  00000  0001110     0000000 000     0123


Q ss_pred             HHHHHhhcCCCCCCCCCChHHHHH
Q 003931          735 TINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       735 ~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++.-.|...+|++||+..|+.+
T Consensus       327 ~~~li~~~L~~dP~~R~ta~e~l~  350 (440)
T PTZ00036        327 AINFISQFLKYEPLKRLNPIEALA  350 (440)
T ss_pred             HHHHHHHHCCCChhHCcCHHHHhC
Confidence            556778899999999999999874

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=96.85  E-value=0.00088  Score=70.68  Aligned_cols=79  Identities=18%  Similarity=0.321  Sum_probs=43.9

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccC----CCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ----RLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~----~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ..+.++|||||||++.|++||+.|..-.....   ....+...    ...........++..+++ .+.|..+.+..||+
T Consensus       184 ~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~---~~~~i~~~~~~~~~p~~~~~~s~~~~~li~-~ll~~~~~r~~r~~  259 (332)
T cd05623         184 KYGPECDWWSLGVCMYEMLYGETPFYAESLVE---TYGKIMNHKERFQFPAQVTDVSEDAKDLIR-RLICSREHRLGQNG  259 (332)
T ss_pred             CCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHH---HHHHHhCCCccccCCCccccCCHHHHHHHH-HHccChhhhcCCCC
Confidence            46789999999999999999999953110000   00001000    010000011123333333 35587777777899


Q ss_pred             hHHHHHH
Q 003931          753 MRFVAQE  759 (785)
Q Consensus       753 m~~vv~~  759 (785)
                      +.|+.+.
T Consensus       260 ~~~~~~h  266 (332)
T cd05623         260 IEDFKQH  266 (332)
T ss_pred             HHHHhCC
Confidence            9888543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=96.83  E-value=0.00049  Score=73.71  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=23.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.|++||+.|..
T Consensus       223 ~~~~~~DiwSlGvilyelltG~~Pf~  248 (370)
T cd05596         223 YYGRECDWWSVGVFLYEMLVGDTPFY  248 (370)
T ss_pred             CCCCceeeeehhHHHHHHHhCCCCcC
Confidence            46789999999999999999999953

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=96.82  E-value=0.00087  Score=70.65  Aligned_cols=80  Identities=23%  Similarity=0.360  Sum_probs=44.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ...+.++|||||||++.|++||+.|..-   ......-....+..+  +........+++..+++ .+.|....|..||+
T Consensus       183 ~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~li~-~ll~~~~~r~~r~~  259 (331)
T cd05597         183 GRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQ--FPPDVTDVSEEAKDLIR-RLICSPETRLGRNG  259 (331)
T ss_pred             cCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCccc--CCCccCCCCHHHHHHHH-HHccCcccccCCCC
Confidence            3467899999999999999999999531   111000000000010  10000011123333443 35587778888999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      +.++..
T Consensus       260 ~~~~l~  265 (331)
T cd05597         260 LQDFKD  265 (331)
T ss_pred             HHHHhc
Confidence            988865

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=96.82  E-value=0.0003  Score=74.27  Aligned_cols=82  Identities=21%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch----------hhhccC--cccccccccCC-------CCC-CCchhH----HHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL----------ITSLSG--ELFLKDVLDQR-------LPP-PTGQLA----EAV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~----------~~~~~~--~~~~~~~~d~~-------l~~-~~~~~~----~~~  732 (785)
                      ..+.++|||||||++.|+++|+.|.+-          +.....  +....++.++.       ... +.....    ..-
T Consensus       186 ~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (332)
T cd07857         186 SYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNAN  265 (332)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCC
Confidence            467899999999999999999988531          000000  00000111100       000 000000    001


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|.+.+|++||++.|+++
T Consensus       266 ~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         266 PLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHhc
Confidence            24557788999999999999999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=96.81  E-value=0.00081  Score=69.31  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++||||+||++.|++||+.|.
T Consensus       179 ~~~~~~~DiwslG~~l~~l~~g~~pf  204 (288)
T cd07871         179 TEYSTPIDMWGVGCILYEMATGRPMF  204 (288)
T ss_pred             cccCcHHHHHHHHHHHHHHHhCCCCC
Confidence            34578899999999999999999884

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=96.76  E-value=0.0012  Score=70.01  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh--CCCCCc-hh-hhccCcccccccccCC-CCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM--GRHPGE-LI-TSLSGELFLKDVLDQR-LPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt--gk~p~~-~~-~~~~~~~~~~~~~d~~-l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      |--.-++.|+++|||.|||-+.|+++  ..+|.. +. +.+.  +...++++.. ..........|-..++++.+.|+..
T Consensus       709 EsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vv--en~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~  786 (807)
T KOG1094|consen  709 ESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVV--ENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRR  786 (807)
T ss_pred             HHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHH--HhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhch
Confidence            44556899999999999999999987  466742 10 0000  0111222211 0000001123455677999999999


Q ss_pred             CCCCCCChHHHHHHHHhc
Q 003931          746 TPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~  763 (785)
                      +.++||+..++..-|++.
T Consensus       787 es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  787 ESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             hhhcCCCHHHHHHHHHHh
Confidence            999999999999888763

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=96.72  E-value=0.00066  Score=67.68  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ....+.++||||+||++.|++||+.|.+....     .........+...   ...   .+.++.-.|.+.+|++||+++
T Consensus       156 ~~~~~~~~DvwslG~il~el~~g~~~~~~~~~-----~~~~~~~~~~~~~---~~~---~~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         156 ISEETEACDWWSLGAILFELLTGKTLVECHPS-----GINTHTTLNIPEW---VSE---EARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCcchhhcCch-----hcccccccCCccc---CCH---HHHHHHHHHccCCHHHhcCCC
Confidence            34567899999999999999999977431100     0000001111110   011   233456679999999999986


Q ss_pred             HH
Q 003931          755 FV  756 (785)
Q Consensus       755 ~v  756 (785)
                      ++
T Consensus       225 ~~  226 (237)
T cd05576         225 VA  226 (237)
T ss_pred             cc
Confidence            55

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=96.66  E-value=0.00039  Score=71.74  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=40.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccc-cccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFL-KDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP  751 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~-~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp  751 (785)
                      .+.++|||||||++.|++||+.|.+........... ..+.  ++....   .   .-..+..+...|.+.+|++||
T Consensus       185 ~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         185 HDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQ---E---MSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             CCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCCCc---c---CCHHHHHHHHHHhcCCHHHhc
Confidence            467899999999999999999996421110000000 0111  111110   0   112344667889999999998

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=96.64  E-value=0.00095  Score=71.81  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=27.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.||+||+.|..
T Consensus       213 PE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~  245 (376)
T cd05598         213 PEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFL  245 (376)
T ss_pred             HHHHcCCCCCcceeeeeccceeeehhhCCCCCC
Confidence            355455567889999999999999999999953

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.64  E-value=0.001  Score=63.75  Aligned_cols=84  Identities=31%  Similarity=0.409  Sum_probs=44.2

Q ss_pred             CCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCC--CCcccCCccccCCCCCcEEEcCCCcccccCCcC---CCCC
Q 003931           75 TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN--QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGD---IGSM  149 (785)
Q Consensus        75 ~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---l~~l  149 (785)
                      ....|+.+.+.+..++ .+..  |..+++|++|.++.|  ++.+..+.-...+++|+++++++|++..  +..   +..+
T Consensus        41 ~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhh
Confidence            3345555555555544 2221  355666777777776  4444444444455666666666666652  112   2344


Q ss_pred             CCCCEEEcccCccc
Q 003931          150 SNLQLVELFNNSFT  163 (785)
Q Consensus       150 ~~L~~L~L~~n~~~  163 (785)
                      .+|..|++.+|..+
T Consensus       116 ~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcc
Confidence            45555555555444

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=96.64  E-value=0.00051  Score=72.83  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.|+++|+.|..
T Consensus       192 ~~~~~~Di~slG~ll~~l~~g~~pf~  217 (343)
T cd07880         192 HYTQTVDIWSVGCIMAEMLTGKPLFK  217 (343)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999853

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.62  E-value=0.00019  Score=80.22  Aligned_cols=189  Identities=22%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             cCCCCCCEEeCCCCC-CCCCC-ccccCCCCCCcEEEccCC-CCcccC----CccCCCCCCccEEECCCCC-CcccCChhh
Q 003931           26 SSLRKVRYLDLGGNF-LETPD-WSKFSSMPSLTHLGLYLN-ELTLEF----PSFILTCRNLTYLDLSLNK-LSGLIPERL   97 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~-i~~~~-~~~f~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~   97 (785)
                      ..++.|+.+.+.++. +.... ......+++|+.|+++++ ......    ......+++|+.|+++++. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            346777777777663 33211 123456677777777762 111111    1233456777778887776 443322333


Q ss_pred             hcCCCCCcEEECCCCC-CcccCC-ccccCCCCCcEEEcCCCccccc--CCcCCCCCCCCCEEEcccCcccccCCccccCC
Q 003931           98 FTNLGKLEYLNLTENQ-FQGKLS-PNVSKLSNLIDLRLATNKFSGP--IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQL  173 (785)
Q Consensus        98 f~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l  173 (785)
                      ...+++|++|.+.++. ++...- .....+++|+.|+++++.....  +.....++++++.+.+....-          +
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c  334 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C  334 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence            2347778888766665 443222 2234567788888887664311  111233456665554433221          2


Q ss_pred             CCCCEEEcccCcCc---ccCCccccCCcccCeeeccccccccCC-chhccCCCCC
Q 003931          174 KNLQHLDLRMNALN---YTIPPELGLCTNLSYLALAVNQLSGGL-PLSLSNLSKL  224 (785)
Q Consensus       174 ~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L  224 (785)
                      +.++.+.+......   .........++.++.+.+..+.+.... ...+.+++.|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            33333333332211   122223455666777766666633222 2334445544

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=96.57  E-value=0.0011  Score=70.40  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.|+|||||||++.|++||+.|.
T Consensus       194 ~~~~~~DvwslG~il~el~~g~~pf  218 (345)
T cd07877         194 HYNQTVDIWSVGCIMAELLTGRTLF  218 (345)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCC
Confidence            4577999999999999999999885

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=96.53  E-value=0.0015  Score=69.88  Aligned_cols=33  Identities=27%  Similarity=0.516  Sum_probs=27.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.||+||+.|..
T Consensus       208 PE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~  240 (364)
T cd05599         208 PEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFC  240 (364)
T ss_pred             HHHHcCCCCCCeeeeecchhHHHHhhcCCCCCC
Confidence            355455567899999999999999999999953

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=96.51  E-value=0.00067  Score=70.03  Aligned_cols=74  Identities=12%  Similarity=0.194  Sum_probs=42.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++|||||||++.|++||+.|..-.....   ....+.+....-+. ....   .+.++.-.|+..+|.+|
T Consensus       168 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~-~~~~---~l~~li~~~l~~~p~~R  240 (290)
T cd05580         168 EIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQ---IYEKILEGKVRFPS-FFSP---DAKDLIRNLLQVDLTKR  240 (290)
T ss_pred             hhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHhcCCccCCc-cCCH---HHHHHHHHHccCCHHHc
Confidence            43334456789999999999999999999953111100   00111111111010 1111   23355677999999999


Q ss_pred             C
Q 003931          751 P  751 (785)
Q Consensus       751 p  751 (785)
                      |
T Consensus       241 ~  241 (290)
T cd05580         241 L  241 (290)
T ss_pred             c
Confidence            9

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=96.50  E-value=0.0018  Score=69.91  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=27.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.||+||+.|..
T Consensus       217 PE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~  249 (382)
T cd05625         217 PEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFL  249 (382)
T ss_pred             HHHhcCCCCCCeeeEEechHHHHHHHhCCCCCC
Confidence            354445567789999999999999999999953

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=96.49  E-value=0.0025  Score=67.16  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=23.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.||+||+.|..
T Consensus       184 ~~~~~~DiwSlGvil~ell~g~~Pf~  209 (331)
T cd05624         184 KYGPECDWWSLGVCMYEMLYGETPFY  209 (331)
T ss_pred             CCCCcccEEeeehhhhhhhhCCCCcc
Confidence            45789999999999999999999953

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.30  E-value=0.0038  Score=64.11  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccc----ccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF----LKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~----~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+-...-...|+|+||.|+...||.+|..|.-  +..  +.+    +.+--=|.+.+.....      +=+..-.|...
T Consensus       180 PEVI~~~~Y~~KADIWSLGITaiEla~GePP~s--~~h--PmrvlflIpk~~PP~L~~~~S~~------~kEFV~~CL~k  249 (467)
T KOG0201|consen  180 PEVIKQSGYDTKADIWSLGITAIELAKGEPPHS--KLH--PMRVLFLIPKSAPPRLDGDFSPP------FKEFVEACLDK  249 (467)
T ss_pred             hhhhccccccchhhhhhhhHHHHHHhcCCCCCc--ccC--cceEEEeccCCCCCccccccCHH------HHHHHHHHhhc
Confidence            355555566899999999999999999999832  110  111    1111223333322121      22334469999


Q ss_pred             CCCCCCChHHHHH
Q 003931          746 TPDTRPSMRFVAQ  758 (785)
Q Consensus       746 ~p~~Rp~m~~vv~  758 (785)
                      +|+.||+..+..+
T Consensus       250 ~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  250 NPEFRPSAKELLK  262 (467)
T ss_pred             CcccCcCHHHHhh
Confidence            9999999998754

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=96.21  E-value=0.0023  Score=68.43  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=26.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.....+.++|||||||++.||+||+.|.
T Consensus       205 PE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf  236 (360)
T cd05627         205 PEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPF  236 (360)
T ss_pred             HHHHcCCCCCCcceeccccceeeecccCCCCC
Confidence            35444556788999999999999999999995

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.00018  Score=68.92  Aligned_cols=36  Identities=19%  Similarity=0.139  Sum_probs=14.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC
Q 003931           27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE   64 (785)
Q Consensus        27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~   64 (785)
                      +++.|++|.||-|+|+.+.  .|..|++|+.|.|..|.
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~   74 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNC   74 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcc
Confidence            3344444444444443332  23333444444444333

>PHA03210 serine/threonine kinase US3; Provisional

Probab=96.20  E-value=0.0023  Score=71.36  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      |+-.....+.++|||||||+++||++|+.|
T Consensus       338 E~~~~~~~~~~~DiwSlGvil~ell~~~~~  367 (501)
T PHA03210        338 EILAGDGYCEITDIWSCGLILLDMLSHDFC  367 (501)
T ss_pred             hhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            444445678899999999999999999743

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=96.19  E-value=0.0037  Score=66.94  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=23.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.||+||+.|..
T Consensus       223 ~~~~~~DiwSlGvilyell~G~~Pf~  248 (371)
T cd05622         223 YYGRECDWWSVGVFLYEMLVGDTPFY  248 (371)
T ss_pred             cCCCccceeehhHHHHHHHhCCCCCC
Confidence            36789999999999999999999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=96.14  E-value=0.0041  Score=66.93  Aligned_cols=32  Identities=25%  Similarity=0.538  Sum_probs=26.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.....+.++|||||||++.|++||+.|.
T Consensus       217 PE~~~~~~~~~~~DiwSlGvil~elltG~~Pf  248 (377)
T cd05629         217 PEIFLQQGYGQECDWWSLGAIMFECLIGWPPF  248 (377)
T ss_pred             HHHHccCCCCCceeeEecchhhhhhhcCCCCC
Confidence            35544556789999999999999999999995

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=96.11  E-value=0.005  Score=65.93  Aligned_cols=25  Identities=32%  Similarity=0.604  Sum_probs=22.9

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.++||||+||++.||+||+.|.
T Consensus       223 ~~~~~~DiwSlG~ilyell~G~~Pf  247 (370)
T cd05621         223 YYGRECDWWSVGVFLFEMLVGDTPF  247 (370)
T ss_pred             CCCcccCEEeehHHHHHHHhCCCCC
Confidence            3678999999999999999999995

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=96.07  E-value=0.0021  Score=65.21  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      |+-.....+.++|||||||++.|++||+.|..
T Consensus       179 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  210 (264)
T cd06653         179 EVISGEGYGRKADVWSVACTVVEMLTEKPPWA  210 (264)
T ss_pred             hhhcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence            44444566789999999999999999999953

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.07  E-value=0.00055  Score=76.53  Aligned_cols=173  Identities=22%  Similarity=0.139  Sum_probs=83.1

Q ss_pred             CCCccEEECCCCCCcccC-ChhhhcCCCCCcEEECCCC-CCcccC----CccccCCCCCcEEEcCCCc-ccccCCcCCC-
Q 003931           76 CRNLTYLDLSLNKLSGLI-PERLFTNLGKLEYLNLTEN-QFQGKL----SPNVSKLSNLIDLRLATNK-FSGPIPGDIG-  147 (785)
Q Consensus        76 l~~L~~L~Ls~n~i~~~~-~~~~f~~l~~L~~L~Ls~n-~i~~~~----~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~-  147 (785)
                      ++.|+.+.+.++.-.... -..+...+++|+.|+++++ ......    ......+++|+.|+++++. ++...-..++ 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            566666666666322111 1123356677777777652 111111    1233445677777777766 4433222222 


Q ss_pred             CCCCCCEEEcccCc-ccccC-CccccCCCCCCEEEcccCcCcc--cCCccccCCcccCeeeccccccccCCchhccCCCC
Q 003931          148 SMSNLQLVELFNNS-FTGQI-PSSLGQLKNLQHLDLRMNALNY--TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSK  223 (785)
Q Consensus       148 ~l~~L~~L~L~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  223 (785)
                      .+++|++|.+.+|. ++... -.....++.|++|+++++....  .+.....++++++.+.+....          .+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence            26777777766665 33221 1123456678888887765421  111223345555554433221          1333


Q ss_pred             CCEEEccCCCCcc--ccCccccCCCCCCCEEEeecCc
Q 003931          224 LNDLGLSDNFLSG--EISANLIGNWTELESLQIQNNS  258 (785)
Q Consensus       224 L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~  258 (785)
                      ++.+.+....-..  .........+++++.+.+..+.
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            3444433332211  1222224566677777776666

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.68  E-value=0.0053  Score=66.51  Aligned_cols=70  Identities=27%  Similarity=0.408  Sum_probs=44.1

Q ss_pred             ccccceeeeehhhhhhhhCCCCCc-hhhhccCcccc----cccccCCCCCCCchhHHHH-HHHHHHHhhcCCCCCCCCCC
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGE-LITSLSGELFL----KDVLDQRLPPPTGQLAEAV-VLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~-~~~~~~~~~~~----~~~~d~~l~~~~~~~~~~~-~~~~~ial~C~~~~p~~Rp~  752 (785)
                      -..+|+||||+-..||.|||.|.- +..   .+..+    +--+.|.+.       +++ .+.-...+.|-.++|.+||+
T Consensus       756 G~aADIWS~GCT~vEMATGrPPF~Elgs---pqAAMFkVGmyKvHP~iP-------eelsaeak~FilrcFepd~~~R~s  825 (1226)
T KOG4279|consen  756 GKAADIWSFGCTMVEMATGRPPFVELGS---PQAAMFKVGMYKVHPPIP-------EELSAEAKNFILRCFEPDPCDRPS  825 (1226)
T ss_pred             CchhhhhhccceeEeeccCCCCeeecCC---hhHhhhhhcceecCCCCc-------HHHHHHHHHHHHHHcCCCcccCcc
Confidence            345799999999999999999941 100   00000    011222221       122 22334578999999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      .++.++
T Consensus       826 A~~LL~  831 (1226)
T KOG4279|consen  826 AKDLLQ  831 (1226)
T ss_pred             HHHhcc
Confidence            999855

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=95.62  E-value=0.0041  Score=72.37  Aligned_cols=21  Identities=38%  Similarity=0.749  Sum_probs=19.3

Q ss_pred             ccceeeeehhhhhhhhCCCCC
Q 003931          681 KCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       681 k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..||||.|+|++||+|||||.
T Consensus      1421 A~DiWslGCVVlEM~tGkrPW 1441 (1509)
T KOG4645|consen 1421 AADIWSLGCVVLEMATGKRPW 1441 (1509)
T ss_pred             chhhhcccceEEEeecCCCch
Confidence            469999999999999999994

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=95.47  E-value=0.0072  Score=57.82  Aligned_cols=77  Identities=18%  Similarity=0.305  Sum_probs=51.4

Q ss_pred             ccccceeeeehhhhhhhhCCCCCchhhhccCcc---cccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGEL---FLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      -..+|.|||.|++-|+.|..-|.  ..|-..+-   ...|=+.+.+.+.   ....   +.++.-.|-.++|.+||....
T Consensus       367 ~raadmwsfaillwel~trevpf--adlspmecgmkialeglrv~ippg---is~h---m~klm~icmnedpgkrpkfdm  438 (448)
T KOG0195|consen  367 IRAADMWSFAILLWELNTREVPF--ADLSPMECGMKIALEGLRVHIPPG---ISRH---MNKLMNICMNEDPGKRPKFDM  438 (448)
T ss_pred             hhhhhHHHHHHHHHHhhcccccc--ccCCchhhhhhhhhccccccCCCC---ccHH---HHHHHHHHhcCCCCcCCCcce
Confidence            35789999999999999999884  33322211   1123334444321   1122   345556799999999999999


Q ss_pred             HHHHHHhc
Q 003931          756 VAQELSAK  763 (785)
Q Consensus       756 vv~~l~~~  763 (785)
                      ||-.|+++
T Consensus       439 ivpilekm  446 (448)
T KOG0195|consen  439 IVPILEKM  446 (448)
T ss_pred             ehhhHHHh
Confidence            99888765

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.42  E-value=0.016  Score=62.74  Aligned_cols=65  Identities=18%  Similarity=0.403  Sum_probs=40.8

Q ss_pred             cccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          680 DKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       680 ~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      .++||||-||||..++||+-|.|      +..-|++..     ++  +... ..+..+-+.+|       .+.+|+.|-|
T Consensus       191 ~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~-----f~--MPs~Is~eaQdLLr~m-------l~VDp~~RiT  256 (786)
T KOG0588|consen  191 RPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGV-----FE--MPSNISSEAQDLLRRM-------LDVDPSTRIT  256 (786)
T ss_pred             CccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCc-----cc--CCCcCCHHHHHHHHHH-------hccCcccccc
Confidence            58999999999999999999976      333343321     11  1110 11111222233       4568999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      |+||.+
T Consensus       257 ~~eI~k  262 (786)
T KOG0588|consen  257 TEEILK  262 (786)
T ss_pred             HHHHhh
Confidence            999865

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=95.35  E-value=0.013  Score=56.46  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=42.5

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc---CCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD---QRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ..-.+|||||||-+.|+.||+-|...-.-  .-+-...|++   |.+.+..+..    -...+..-.|...++.+||.-.
T Consensus       271 YDiRaDVWSlGITlveLaTg~yPy~~c~t--dFe~ltkvln~ePP~L~~~~gFS----p~F~~fv~~CL~kd~r~RP~Y~  344 (391)
T KOG0983|consen  271 YDIRADVWSLGITLVELATGQYPYKGCKT--DFEVLTKVLNEEPPLLPGHMGFS----PDFQSFVKDCLTKDHRKRPKYN  344 (391)
T ss_pred             cchhhhhhhhccchhhhhcccCCCCCCCc--cHHHHHHHHhcCCCCCCcccCcC----HHHHHHHHHHhhcCcccCcchH
Confidence            34579999999999999999999531000  0000112222   2332211111    1233455679999999999765


Q ss_pred             HH
Q 003931          755 FV  756 (785)
Q Consensus       755 ~v  756 (785)
                      +.
T Consensus       345 ~L  346 (391)
T KOG0983|consen  345 KL  346 (391)
T ss_pred             HH
Confidence            54

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=95.15  E-value=0.0088  Score=57.82  Aligned_cols=45  Identities=22%  Similarity=0.410  Sum_probs=38.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.+.|+|++|++++|+                                      ..+.++...|.+.+|++||++.++
T Consensus       170 ~~~~~~D~~~lg~~~~~l--------------------------------------~~~~~~l~~~l~~~p~~R~~~~~l  211 (215)
T cd00180         170 YYSEKSDIWSLGVILYEL--------------------------------------PELKDLIRKMLQKDPEKRPSAKEI  211 (215)
T ss_pred             CCCchhhhHHHHHHHHHH--------------------------------------HHHHHHHHHHhhCCcccCcCHHHH
Confidence            667889999999999998                                      234566778999999999999998


Q ss_pred             HHH
Q 003931          757 AQE  759 (785)
Q Consensus       757 v~~  759 (785)
                      ++.
T Consensus       212 ~~~  214 (215)
T cd00180         212 LEH  214 (215)
T ss_pred             hhC
Confidence            764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=94.98  E-value=0.021  Score=64.06  Aligned_cols=83  Identities=17%  Similarity=0.278  Sum_probs=58.9

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ...-+++|+|+|+.||+|.-|.-...|.+       +..-..|++....-+. ....+++.   .+...|.+++|++||+
T Consensus       231 sg~pI~eKsDIWALGclLYkLCy~t~PFe-------~sg~laIlng~Y~~P~~p~ys~~l~---~LI~~mL~~nP~~RPn  300 (738)
T KOG1989|consen  231 SGLPIGEKSDIWALGCLLYKLCYFTTPFE-------ESGKLAILNGNYSFPPFPNYSDRLK---DLIRTMLQPNPDERPN  300 (738)
T ss_pred             cCCCCcchhHHHHHHHHHHHHHHhCCCcC-------cCcceeEEeccccCCCCccHHHHHH---HHHHHHhccCcccCCC
Confidence            34557899999999999999999999953       1112345555543222 12223333   4456799999999999


Q ss_pred             hHHHHHHHHhcccc
Q 003931          753 MRFVAQELSAKTQA  766 (785)
Q Consensus       753 m~~vv~~l~~~~~~  766 (785)
                      +-+|+..+.++...
T Consensus       301 I~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  301 IYQVLEEIFELANK  314 (738)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999998877654

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.97  E-value=0.015  Score=61.44  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=43.6

Q ss_pred             ccccceeeeehhhhhhhhCCCCCch------hhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGEL------ITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP  751 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~------~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp  751 (785)
                      ..++||||+||+|.-|++|+-|.+-      ...... +-.+.+.++         .    ..+..+.-.|...+|.+|+
T Consensus       201 g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~---------S----~~~~~Li~~mL~~~P~~R~  267 (370)
T KOG0583|consen  201 GKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLL---------S----PEARSLIEKMLVPDPSTRI  267 (370)
T ss_pred             CchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcC---------C----HHHHHHHHHHcCCCcccCC
Confidence            4789999999999999999999651      000000 111111111         1    1233456678999999999


Q ss_pred             ChHHHH
Q 003931          752 SMRFVA  757 (785)
Q Consensus       752 ~m~~vv  757 (785)
                      ++.|+.
T Consensus       268 t~~~i~  273 (370)
T KOG0583|consen  268 TLLEIL  273 (370)
T ss_pred             CHHHHh
Confidence            999997

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.97  E-value=0.02  Score=55.52  Aligned_cols=86  Identities=19%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.....+.|+||||.|+|+.||..=+.|..--.+..-..++...--|.+.     .+.---.+-+++-.|.+.+|+.
T Consensus       197 PE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p-----~~~YS~~l~~li~~ci~vd~~~  271 (375)
T KOG0591|consen  197 PERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLP-----DEHYSTDLRELINMCIAVDPEQ  271 (375)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCc-----HHHhhhHHHHHHHHHccCCccc
Confidence            35556677789999999999999999999985300000000111111011111     0111123456677899999999


Q ss_pred             CCChHHHHHHH
Q 003931          750 RPSMRFVAQEL  760 (785)
Q Consensus       750 Rp~m~~vv~~l  760 (785)
                      ||+....|+.+
T Consensus       272 RP~t~~~v~di  282 (375)
T KOG0591|consen  272 RPDTVPYVQDI  282 (375)
T ss_pred             CCCcchHHHHH
Confidence            99965444444

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.89  E-value=0.012  Score=63.45  Aligned_cols=68  Identities=21%  Similarity=0.322  Sum_probs=44.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc-------hhhhccC---cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      -...+..||||||+=+|||+|+.=|..       +-+-|-+   +..+..|=||.              |-++.-.|...
T Consensus       218 E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPe--------------vr~fIekCl~~  283 (632)
T KOG0584|consen  218 ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPE--------------VREFIEKCLAT  283 (632)
T ss_pred             hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHH--------------HHHHHHHHhcC
Confidence            456789999999999999999988843       2222222   12222333332              22445568888


Q ss_pred             CCCCCCChHHHHH
Q 003931          746 TPDTRPSMRFVAQ  758 (785)
Q Consensus       746 ~p~~Rp~m~~vv~  758 (785)
                       .++||+..|.++
T Consensus       284 -~~~R~sa~eLL~  295 (632)
T KOG0584|consen  284 -KSERLSAKELLK  295 (632)
T ss_pred             -chhccCHHHHhh
Confidence             889999998754

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=94.75  E-value=0.019  Score=58.15  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=28.2

Q ss_pred             CCCchhhhhhhcccccccceeeeehhhhhhhhCCC
Q 003931          665 SDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRH  699 (785)
Q Consensus       665 ~~n~l~e~~~~~~~t~k~DVYSfGvvlLElltgk~  699 (785)
                      .+.+-+|+-.+.--+..|||||+|+||.|+.||..
T Consensus       273 RHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~  307 (415)
T KOG0671|consen  273 RHYRAPEVILGLGWSQPCDVWSIGCILVELYTGET  307 (415)
T ss_pred             cccCCchheeccCcCCccCceeeeeEEEEeeccce
Confidence            34455676666677899999999999999999964

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=94.72  E-value=0.0074  Score=57.81  Aligned_cols=78  Identities=19%  Similarity=0.136  Sum_probs=46.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCccccccc--ccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDV--LDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ..-++||||.||-|.|+.||+-|.+  +|-.--+.+..|  =||..........+--..+....-.|+-.+-..||.-.+
T Consensus       246 yDiRSDvWSLGITL~EvAtG~fPyr--~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~  323 (361)
T KOG1006|consen  246 YDIRSDVWSLGITLYEVATGNFPYR--KWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDD  323 (361)
T ss_pred             cchhhhhhhhcceEeeeecCCCCcc--hHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhh
Confidence            3467999999999999999999964  221100001111  122221111111112234556667899999999999877


Q ss_pred             HH
Q 003931          756 VA  757 (785)
Q Consensus       756 vv  757 (785)
                      ..
T Consensus       324 Lk  325 (361)
T KOG1006|consen  324 LK  325 (361)
T ss_pred             hh
Confidence            53

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.69  E-value=0.011  Score=63.46  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc--hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE--LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~--~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+....--+-.+||||.|||+.-|++||.|-+  -++-....-...+..=|.-   -.....      .+.-.-.+.+|.
T Consensus       188 EVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~---ls~~A~------dLI~~lL~~~P~  258 (592)
T KOG0575|consen  188 EVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSH---LSAEAK------DLIRKLLRPNPS  258 (592)
T ss_pred             hHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccc---cCHHHH------HHHHHHhcCCcc
Confidence            44444445667899999999999999999964  1111000000111111111   011111      222234689999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||+..+|+.
T Consensus       259 ~Rpsl~~vL~  268 (592)
T KOG0575|consen  259 ERPSLDEVLD  268 (592)
T ss_pred             cCCCHHHHhc
Confidence            9999999975

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=94.48  E-value=0.016  Score=67.25  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc-----hhhhccCcccc---cccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE-----LITSLSGELFL---KDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~-----~~~~~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      .+.+.|.|.||.|||++||+-- -+|.     ...-.+. +.+   .+..|++.           ..-..+.-+-++.+|
T Consensus       793 ~~Yn~KiDmYSLGIVlFEM~yP-F~TsMERa~iL~~LR~-g~iP~~~~f~~~~~-----------~~e~slI~~Ll~hdP  859 (1351)
T KOG1035|consen  793 NKYNSKIDMYSLGIVLFEMLYP-FGTSMERASILTNLRK-GSIPEPADFFDPEH-----------PEEASLIRWLLSHDP  859 (1351)
T ss_pred             ccccchhhhHHHHHHHHHHhcc-CCchHHHHHHHHhccc-CCCCCCcccccccc-----------hHHHHHHHHHhcCCC
Confidence            3689999999999999999965 3332     1111121 111   12223222           122233445678999


Q ss_pred             CCCCChHHHH
Q 003931          748 DTRPSMRFVA  757 (785)
Q Consensus       748 ~~Rp~m~~vv  757 (785)
                      .+|||..|+.
T Consensus       860 ~kRPtA~eLL  869 (1351)
T KOG1035|consen  860 SKRPTATELL  869 (1351)
T ss_pred             ccCCCHHHHh
Confidence            9999999875

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.44  E-value=0.024  Score=60.35  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=48.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-----hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-----LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-----~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      +|.......-.|.||||+|+++.||+-|..|.=     -+-|.     +..---|++.... ....+.   =+.--.|..
T Consensus       438 PEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyL-----Ia~ng~P~lk~~~-klS~~~---kdFL~~cL~  508 (550)
T KOG0578|consen  438 PEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL-----IATNGTPKLKNPE-KLSPEL---KDFLDRCLV  508 (550)
T ss_pred             hhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHH-----HhhcCCCCcCCcc-ccCHHH---HHHHHHHhh
Confidence            354444455689999999999999999999841     01111     1111112222110 111111   234567999


Q ss_pred             CCCCCCCChHHHHH
Q 003931          745 TTPDTRPSMRFVAQ  758 (785)
Q Consensus       745 ~~p~~Rp~m~~vv~  758 (785)
                      .+|++||+..|.++
T Consensus       509 ~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  509 VDVEQRASAKELLE  522 (550)
T ss_pred             cchhcCCCHHHHhc
Confidence            99999999998754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.79  E-value=0.022  Score=32.26  Aligned_cols=11  Identities=73%  Similarity=1.020  Sum_probs=4.6

Q ss_pred             CEEECcCCccc
Q 003931          298 ENLDLSGNQLS  308 (785)
Q Consensus       298 ~~L~Ls~n~l~  308 (785)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=93.65  E-value=0.022  Score=62.07  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC--c-hhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT--G-QLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~--~-~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+......|...|=|||||++.||++|..|-       ..+...|++|.-+....  + ....+.+   .|.-.-...+
T Consensus       537 PEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF-------~gddEee~FdsI~~d~~~yP~~ls~ea~---~il~~ll~k~  606 (694)
T KOG0694|consen  537 PEVLTEQSYTRAVDWWGLGVLLYEMLVGESPF-------PGDDEEEVFDSIVNDEVRYPRFLSKEAI---AIMRRLLRKN  606 (694)
T ss_pred             hhhhccCcccchhhHHHHHHHHHHHHcCCCCC-------CCCCHHHHHHHHhcCCCCCCCcccHHHH---HHHHHHhccC
Confidence            36777788899999999999999999999994       22233444443332110  0 1111222   2223335788


Q ss_pred             CCCCCCh----HHHHH
Q 003931          747 PDTRPSM----RFVAQ  758 (785)
Q Consensus       747 p~~Rp~m----~~vv~  758 (785)
                      |++|-.|    .++|+
T Consensus       607 p~kRLG~~e~d~~~i~  622 (694)
T KOG0694|consen  607 PEKRLGSGERDAEDIK  622 (694)
T ss_pred             cccccCCCCCCchhhh
Confidence            9999988    55554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.90  E-value=0.045  Score=31.01  Aligned_cols=19  Identities=47%  Similarity=0.716  Sum_probs=9.9

Q ss_pred             CcEEECcCccccccCChhcc
Q 003931          273 LQYLFLYRNNFSGPIPSEIE  292 (785)
Q Consensus       273 L~~L~L~~n~l~~~~p~~~~  292 (785)
                      |++|++++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=92.77  E-value=0.099  Score=57.64  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=19.6

Q ss_pred             ccccceeeeehhhhhhhhCCC-CC
Q 003931          679 TDKCDVFSFGVVALEVMMGRH-PG  701 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~-p~  701 (785)
                      ..+.||||+|||++||++|+. |.
T Consensus       410 ~~~~DvwSlGvil~em~~~~l~p~  433 (507)
T PLN03224        410 PDLFDSYTAGVLLMQMCVPELRPV  433 (507)
T ss_pred             CCccchhhHHHHHHHHHhCCCCCc
Confidence            456899999999999999975 54

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=92.19  E-value=0.12  Score=54.54  Aligned_cols=83  Identities=12%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-...-...|+|+||+|+++-|+.+=|++.+--.+..- .......++|--...    ..++.   .+.-.|++.+|+
T Consensus       175 PEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~y----s~el~---~lv~~~l~~~P~  247 (426)
T KOG0589|consen  175 PEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMY----SSELR---SLVKSMLRKNPE  247 (426)
T ss_pred             HHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccc----cHHHH---HHHHHHhhcCCc
Confidence            4666667778999999999999999999988531110000 001112223322111    12222   334578999999


Q ss_pred             CCCChHHHHHH
Q 003931          749 TRPSMRFVAQE  759 (785)
Q Consensus       749 ~Rp~m~~vv~~  759 (785)
                      .||+..+++.+
T Consensus       248 ~RPsa~~LL~~  258 (426)
T KOG0589|consen  248 HRPSALELLRR  258 (426)
T ss_pred             cCCCHHHHhhC
Confidence            99999999876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.56  E-value=0.16  Score=30.06  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=14.3

Q ss_pred             CCCCEEeCCCCCCCCCCccccC
Q 003931           29 RKVRYLDLGGNFLETPDWSKFS   50 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~   50 (785)
                      ++|++|+|++|.|+.++.++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4666677777766666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.56  E-value=0.16  Score=30.06  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=14.3

Q ss_pred             CCCCEEeCCCCCCCCCCccccC
Q 003931           29 RKVRYLDLGGNFLETPDWSKFS   50 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~   50 (785)
                      ++|++|+|++|.|+.++.++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4666677777766666666554

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=91.22  E-value=0.15  Score=52.34  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             cccceeeeehhhhhhhhCCCCCchhhhccCcccc-cccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          680 DKCDVFSFGVVALEVMMGRHPGELITSLSGELFL-KDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       680 ~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .|.|+||.||||.=.+||-.|..  +.. ..... ..+.-.+..-....+.+--.++..+.-.-...+|++||+..|+++
T Consensus       360 ~kVDiWSlGcvLfvcLsG~pPFS--~~~-~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  360 SKVDIWSLGCVLFVCLSGYPPFS--EEY-TDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             chheeeeccceEEEEeccCCCcc--ccc-CCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence            57899999999999999999942  000 00000 011111111000111111122334444556789999999999865

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=91.15  E-value=0.39  Score=47.42  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             hhhhh-cccccccceeeeehhhhhhhhCC--CCCc--------hhhhcc-----------CcccccccccCCCCCCCchh
Q 003931          671 ELAVT-MRVTDKCDVFSFGVVALEVMMGR--HPGE--------LITSLS-----------GELFLKDVLDQRLPPPTGQL  728 (785)
Q Consensus       671 e~~~~-~~~t~k~DVYSfGvvlLElltgk--~p~~--------~~~~~~-----------~~~~~~~~~d~~l~~~~~~~  728 (785)
                      |+-.+ .+.-...|||+.|+|+-||+||.  +|.+        ++.-+.           .......+.=|....+. ..
T Consensus       171 ELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~e-pL  249 (396)
T KOG0593|consen  171 ELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPE-PL  249 (396)
T ss_pred             hhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCcc-ch
Confidence            44333 45556789999999999999997  5643        111111           11112222222221110 01


Q ss_pred             HH----HHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          729 AE----AVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       729 ~~----~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      +.    .--.++.++-.|.+.+|.+|++-.+..
T Consensus       250 e~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  250 ERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             hhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence            11    112456788899999999999988764

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=91.02  E-value=0.11  Score=56.73  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             CCCchhhhhhhcccccccceeeeehhhhhhhhCCCC
Q 003931          665 SDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       665 ~~n~l~e~~~~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      ++.+-+|+-.+....++.|+||+|+|+-||+|| +|
T Consensus       352 RfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG-~P  386 (586)
T KOG0667|consen  352 RFYRAPEVILGLPYDTAIDMWSLGCILAELFTG-EP  386 (586)
T ss_pred             cccccchhhccCCCCCccceeehhhhHHhHhcC-cc
Confidence            445567888899999999999999999999999 56

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.92  E-value=0.22  Score=29.47  Aligned_cols=22  Identities=50%  Similarity=0.606  Sum_probs=13.4

Q ss_pred             CCccEEECCCCCCcccCChhhhc
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFT   99 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~   99 (785)
                      ++|++|+|++|.++ .+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            45666666666666 55665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.92  E-value=0.22  Score=29.47  Aligned_cols=22  Identities=50%  Similarity=0.606  Sum_probs=13.4

Q ss_pred             CCccEEECCCCCCcccCChhhhc
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFT   99 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~   99 (785)
                      ++|++|+|++|.++ .+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            45666666666666 55665543

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=90.85  E-value=0.15  Score=52.98  Aligned_cols=86  Identities=17%  Similarity=0.323  Sum_probs=54.7

Q ss_pred             cccceeeeehhhhhhhhCCCCCc--------hhhhccCccc---ccccc-cCCCCC---CCchhHHHHHHHHHHHhhcCC
Q 003931          680 DKCDVFSFGVVALEVMMGRHPGE--------LITSLSGELF---LKDVL-DQRLPP---PTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       680 ~k~DVYSfGvvlLElltgk~p~~--------~~~~~~~~~~---~~~~~-d~~l~~---~~~~~~~~~~~~~~ial~C~~  744 (785)
                      ..+||||||.|+-|+.-.-.-.+        +..||..+..   +.+|+ ..++.+   ......+++..+.++.-.|+.
T Consensus       405 k~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~  484 (513)
T KOG2052|consen  405 KRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWY  484 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhc
Confidence            34799999999999963321111        2344444222   22222 223322   122345678888999999999


Q ss_pred             CCCCCCCChHHHHHHHHhccc
Q 003931          745 TTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       745 ~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+|..|-|.-.+-+.|.++.+
T Consensus       485 ~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  485 ANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             CCchhhhHHHHHHHHHHHHhc
Confidence            999999998888777776643

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=90.81  E-value=0.12  Score=55.09  Aligned_cols=79  Identities=15%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-hhhhccCcccccccccCCCCCCCc--hhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-LITSLSGELFLKDVLDQRLPPPTG--QLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-~~~~~~~~~~~~~~~d~~l~~~~~--~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+-....++..||+|+||+++..|+.|+.|-. --+|    ...+.|++-...-+.+  .....+++      .-...+
T Consensus       256 PElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ney----liFqkI~~l~y~fp~~fp~~a~dLv~------KLLv~d  325 (604)
T KOG0592|consen  256 PELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEY----LIFQKIQALDYEFPEGFPEDARDLIK------KLLVRD  325 (604)
T ss_pred             HHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHH----HHHHHHHHhcccCCCCCCHHHHHHHH------HHHccC
Confidence            466667788899999999999999999999942 0011    1234454444332211  11122222      124578


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |.+|++.+++-+
T Consensus       326 p~~Rlt~~qIk~  337 (604)
T KOG0592|consen  326 PSDRLTSQQIKA  337 (604)
T ss_pred             ccccccHHHHhh
Confidence            999999966543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.78  E-value=0.0067  Score=56.87  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCC
Q 003931           48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN  127 (785)
Q Consensus        48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  127 (785)
                      .+......+.||++.|.+. ....-|..++.|..|+++.|.+. ..|.++ ..+..++.+++..|+.+ ..|..+...++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCC
Confidence            3444445555555555443 12223444445555555555554 444443 44555555555544444 34444455555


Q ss_pred             CcEEEcCCCc
Q 003931          128 LIDLRLATNK  137 (785)
Q Consensus       128 L~~L~L~~n~  137 (785)
                      ++++++..|.
T Consensus       113 ~k~~e~k~~~  122 (326)
T KOG0473|consen  113 PKKNEQKKTE  122 (326)
T ss_pred             cchhhhccCc
Confidence            5555444444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.54  E-value=0.00099  Score=72.30  Aligned_cols=38  Identities=32%  Similarity=0.315  Sum_probs=17.8

Q ss_pred             CCCCEEECcCCcccccCC----ccCcCCCCCCEEEccccccc
Q 003931          295 TSLENLDLSGNQLSGTIP----PTLWNLTNLLSLQLFSNNLS  332 (785)
Q Consensus       295 ~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~  332 (785)
                      ..+++++++.|.+++...    ..+..++.++++.++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            344555555555543321    22334445555555555544

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=90.00  E-value=0.2  Score=54.30  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=44.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      -...|+|||||||-|.||.-|..|-.       +.+-++.       --|.+..+. .+....   -.+--.|...+|+.
T Consensus       211 PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKS-------ePPTLlqPS-~Ws~~F---~DfLk~cL~Knp~~  279 (1187)
T KOG0579|consen  211 PYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKS-------EPPTLLQPS-HWSRSF---SDFLKRCLVKNPRN  279 (1187)
T ss_pred             CchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhc-------CCCcccCcc-hhhhHH---HHHHHHHHhcCCcc
Confidence            34568999999999999999998843       1111111       112332221 222222   23445699999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+..++.+
T Consensus       280 Rp~aaqll~  288 (1187)
T KOG0579|consen  280 RPPAAQLLK  288 (1187)
T ss_pred             CCCHHHHhh
Confidence            999887643

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=89.99  E-value=0.085  Score=51.61  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.4

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ....+.++|||+||++++|++||+.|.
T Consensus       174 ~~~~~~~~Dv~~lG~~~~~l~~g~~pf  200 (225)
T smart00221      174 GKGYGEAVDIWSLGVILYELLWGPEPF  200 (225)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCc
Confidence            345567999999999999999999985

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=89.73  E-value=0.11  Score=53.21  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+.+..+...|+|.||-|+|+.|++|||.|.+
T Consensus       183 PEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~  215 (429)
T KOG0595|consen  183 PEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD  215 (429)
T ss_pred             HHHHHhccccchhhHHHHHHHHHHHHhCCCCcc
Confidence            588889999999999999999999999999976

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=88.87  E-value=0.24  Score=52.52  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCC--CCC-chhHHHHHHHHHHHhhcCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLP--PPT-GQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~--~~~-~~~~~~~~~~~~ial~C~~~~  746 (785)
                      |.......+..+||||-||++..|+.|..|..    ... .+...++...+..  .+. ....+...   .....+...+
T Consensus       208 Evl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~----~~~~~~~~~~i~~~~~~f~~~~w~~is~~ak---d~i~~ll~~d  280 (382)
T KOG0032|consen  208 EVLGGRPYGDEVDVWSIGVILYILLSGVPPFW----GETEFEIFLAILRGDFDFTSEPWDDISESAK---DFIRKLLEFD  280 (382)
T ss_pred             hhhcCCCCCcccchhHHHHHHHHHhhCCCCCc----CCChhHHHHHHHcCCCCCCCCCccccCHHHH---HHHHHhcccC
Confidence            44444677899999999999999999999952    111 0111122222211  110 11111111   2334577888


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |.+|++..+|.+
T Consensus       281 p~~R~ta~~~L~  292 (382)
T KOG0032|consen  281 PRKRLTAAQALQ  292 (382)
T ss_pred             cccCCCHHHHhc
Confidence            999999999976

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.38  E-value=0.0031  Score=68.49  Aligned_cols=135  Identities=23%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             CCcEEEcCCCccccc----CCcCCCCCCCCCEEEcccCcccc----cCCccc----cCCCCCCEEEcccCcCcccCC---
Q 003931          127 NLIDLRLATNKFSGP----IPGDIGSMSNLQLVELFNNSFTG----QIPSSL----GQLKNLQHLDLRMNALNYTIP---  191 (785)
Q Consensus       127 ~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~----~~~~~l----~~l~~L~~L~l~~n~l~~~~~---  191 (785)
                      .+++|++..|.+++.    +...+.....+++++++.|.+..    .++.++    ....++++|.+++|.++....   
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            344455555544432    12233345555556666555421    112222    235566777777766652111   


Q ss_pred             -ccccCCcc-cCeeeccccccccCC----chhccCC-CCCCEEEccCCCCccccCcc---ccCCCCCCCEEEeecCcCcc
Q 003931          192 -PELGLCTN-LSYLALAVNQLSGGL----PLSLSNL-SKLNDLGLSDNFLSGEISAN---LIGNWTELESLQIQNNSFMG  261 (785)
Q Consensus       192 -~~~~~l~~-L~~L~l~~n~i~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~  261 (785)
                       ..+...+. +..++++.|.+.+..    ...+..+ ..+++++++.|.+...-...   .+..++.++.+.+++|.+..
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence             12233344 556777777765431    2233344 56678888888776432221   24456678888888887654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.94  E-value=0.29  Score=25.62  Aligned_cols=10  Identities=60%  Similarity=0.677  Sum_probs=3.2

Q ss_pred             ccEEECCCCC
Q 003931           79 LTYLDLSLNK   88 (785)
Q Consensus        79 L~~L~Ls~n~   88 (785)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3344444443

...

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.81  E-value=0.3  Score=51.29  Aligned_cols=86  Identities=19%  Similarity=0.277  Sum_probs=48.1

Q ss_pred             hhcccccccceeeeehhhhhhhhCCC--C----Cc-h--hhhccC----ccc-----ccccccCCCCCCCchh-----HH
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRH--P----GE-L--ITSLSG----ELF-----LKDVLDQRLPPPTGQL-----AE  730 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~--p----~~-~--~~~~~~----~~~-----~~~~~d~~l~~~~~~~-----~~  730 (785)
                      .++..|.+.|+|+||+|+.|+.+=|.  |    +| +  ++.|-.    +.|     ....+.-++....+..     ..
T Consensus       183 rs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~  262 (538)
T KOG0661|consen  183 RSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPN  262 (538)
T ss_pred             hccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcc
Confidence            34667889999999999999987652  2    22 1  111111    001     1112221211100000     01


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCChHHHHHH
Q 003931          731 AVVLTINVALACTSTTPDTRPSMRFVAQE  759 (785)
Q Consensus       731 ~~~~~~~ial~C~~~~p~~Rp~m~~vv~~  759 (785)
                      +-.+.+++.-.|.+-+|.+|||..++++.
T Consensus       263 ~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  263 ASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             cCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence            22334566678999999999999998764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.78  E-value=0.031  Score=52.54  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=26.3

Q ss_pred             cccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCc
Q 003931          532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND  595 (785)
Q Consensus       532 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  595 (785)
                      |+.++.|..|+++.|++. ..|..++....+..+++.+|..+ ..|.+++..++++.+++.+|.
T Consensus        61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            333334444444444443 33344444444444444444333 334444444444444444444

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=87.22  E-value=0.2  Score=46.57  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+-|+||||.|+-+.|+.|||.|.+
T Consensus       228 gY~vksDvWSLGItmiElA~lr~PY~  253 (282)
T KOG0984|consen  228 GYSVKSDVWSLGITMIEMAILRFPYE  253 (282)
T ss_pred             cceeehhhhhhhhhhhhhhhcccccc
Confidence            45789999999999999999999965

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=86.51  E-value=0.42  Score=45.60  Aligned_cols=79  Identities=16%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhh--hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELIT--SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |...+.--..+.|+|+.||+..|.+.|..|.+-..  -....-.-.++.+|.-.  +    .   .+..+...|...+|.
T Consensus       192 Emv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~i--s----~---~a~dlI~~ll~~~p~  262 (281)
T KOG0580|consen  192 EMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTI--S----G---GAADLISRLLVKNPI  262 (281)
T ss_pred             hhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCccc--C----h---hHHHHHHHHhccCcc
Confidence            44445556778999999999999999999964111  00001111234444211  1    1   123456679999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +|++-.||++
T Consensus       263 ~r~~l~~v~~  272 (281)
T KOG0580|consen  263 ERLALTEVMD  272 (281)
T ss_pred             ccccHHHHhh
Confidence            9999999875

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=85.08  E-value=0.58  Score=49.56  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             cccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH-
Q 003931          680 DKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ-  758 (785)
Q Consensus       680 ~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~-  758 (785)
                      ...||||.||+|.-++-|+.|.+   -+-..+...-++|.....+.-...+| ..++   -.....+|++|-+..|++. 
T Consensus       198 PAVDiWSLGVILyMLVCGq~PFq---eANDSETLTmImDCKYtvPshvS~eC-rdLI---~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  198 PAVDIWSLGVILYMLVCGQPPFQ---EANDSETLTMIMDCKYTVPSHVSKEC-RDLI---QSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             cchhhhHHHHHHHHHHhCCCccc---cccchhhhhhhhcccccCchhhhHHH-HHHH---HHHHhcCchhhccHHHHhcc
Confidence            46799999999999999999952   11124556778888876543222222 2222   2345689999999999875 


Q ss_pred             -HHHhcc
Q 003931          759 -ELSAKT  764 (785)
Q Consensus       759 -~l~~~~  764 (785)
                       ||+.+.
T Consensus       271 ~Wlq~~D  277 (864)
T KOG4717|consen  271 SWLQAGD  277 (864)
T ss_pred             ccccCCC
Confidence             565543

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=84.41  E-value=0.53  Score=48.77  Aligned_cols=28  Identities=32%  Similarity=0.631  Sum_probs=25.4

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCc
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+++.|.||||.||++..-+-||+|.+
T Consensus       658 PPKIsnKVDVWSvGVIFyQClYGrKPFG  685 (775)
T KOG1151|consen  658 PPKISNKVDVWSVGVIFYQCLYGRKPFG  685 (775)
T ss_pred             CCccccceeeEeeehhhhhhhccCCCCC
Confidence            3578999999999999999999999964

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.01  E-value=0.13  Score=47.71  Aligned_cols=81  Identities=17%  Similarity=0.106  Sum_probs=47.9

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC-CcccCCccCC-CCCCccEEECCCC-CCcccCChhhhcCCCCCcE
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE-LTLEFPSFIL-TCRNLTYLDLSLN-KLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~~~~~f~~l~~L~~  106 (785)
                      .++.+|-++..|.......+.+++.++.|.+.+|. +..-.-+.++ -.++|+.|++++| +|+..--.. +.++++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHH
Confidence            46677777777766666667777777777776664 1111111111 2467888888877 455322222 356777777


Q ss_pred             EECCC
Q 003931          107 LNLTE  111 (785)
Q Consensus       107 L~Ls~  111 (785)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            76654

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=82.51  E-value=0.51  Score=47.96  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      |+-...-.+..+|-||.||++.||+||+.|-
T Consensus       195 Eil~~~gy~~~vDWWsLGillYeML~G~pPF  225 (357)
T KOG0598|consen  195 EILLGKGYDKAVDWWSLGILLYEMLTGKPPF  225 (357)
T ss_pred             HHHhcCCCCcccchHhHHHHHHHHhhCCCCC
Confidence            5555556678899999999999999999995

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=81.35  E-value=2.5  Score=45.11  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      .+.+...|+||-|+|+.||++||..
T Consensus       295 t~Yg~aVDlWS~GCIl~El~~gkPI  319 (560)
T KOG0600|consen  295 TSYGTAVDLWSVGCILAELFLGKPI  319 (560)
T ss_pred             cccccceeehhhhHHHHHHHcCCCC
Confidence            3567889999999999999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	785
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-51
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-49
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-43
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-51
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-49
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-43
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-09
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 291/616 (47%), Gaps = 42/616 (6%)
Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLS---SLRKVRYLDLGGNFLETPD---WSKFSSMPS 54
           +G  S L++L+V  N L+   P ++S    L  +  LDL  N +   +   W        
Sbjct: 119 LGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 55  LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
           L HL +  N+++ +    +  C NL +LD+S N  S  IP     +   L++L+++ N+ 
Sbjct: 177 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKL 232
Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQL 173
            G  S  +S  + L  L +++N+F GPIP     + +LQ + L  N FTG+IP  L G  
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 174 KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXX-XXXXXXXXXXXXXXXXXX 232
             L  LDL  N     +PP  G C+ L  LAL+ N                         
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 233 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK--LQYLFLYRNNFSGPIPSE 290
             SGE+  +L      L +L + +N+F G I P +    K  LQ L+L  N F+G IP  
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
           +   + L +L LS N LSGTIP +                  G IP E+  + +L    +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPH 410
           + N L GE+P  +S    LN  S+  N  +G IP   G+   +L  +  SNNSFSG +P 
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPA 529
Query: 411 ELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF-DGNQFT-----GNITKAFGVHP 464
           EL    +L  L +N N F G++PA +   S      F  G ++      G   +  G   
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 465 RLDFIRLSGNQ----------------FVGEISPDWGECRNLSNLQLDRNRISGGIPAEL 508
            L+F  +   Q                + G  SP +    ++  L +  N +SG IP E+
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
           G++  L +L+L  N+++G IP ++G L  L  L+LS+N L G IP+++S LT L  +DLS
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 569 NNKLTGDVPQELGRFD 584
           NN L+G +P E+G+F+
Sbjct: 710 NNNLSGPIP-EMGQFE 724

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 202/670 (30%), Positives = 309/670 (46%), Gaps = 67/670 (10%)
Query: 14  DNNLNGAIP-FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLG-LYLNELTLEFPS 71
           ++++NG++  F+ S+   +  LDL  N L  P  +  +S+ S + L  L ++  TL+FP 
Sbjct: 83  NSHINGSVSGFKCSA--SLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 72  FI---LTCRNLTYLDLSLNKLSG--LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
            +   L   +L  LDLS N +SG  ++   L    G+L++L ++ N+  G +  +VS+  
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
           NL  L +++N FS  IP  +G  S LQ +++  N  +G    ++     L+ L++  N  
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 187 NYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNW 246
              IPP L L  +L YL+LA N+                         +GEI   L G  
Sbjct: 257 VGPIPP-LPL-KSLQYLSLAENK------------------------FTGEIPDFLSGAC 290
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGN 305
             L  L +  N F G +PP  G  + L+ L L  NNFSG +P + + K+  L+ LDLS N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 306 QLSGTIPPTXXXXXXXXXXXXXXXXX-XGTIPPEIGS--MASLVAFDVNTNQLHGELPEN 362
           + SG +P +                   G I P +      +L    +  N   G++P  
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELT 422
           +S   +L    +  N  SG+IP   G  S  L ++    N   GE+P EL     LE L 
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP 482
           ++ N+ TG +P+ L NC+NLN +    N+ TG I K  G    L  ++LS N F G I  
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 483 DWGECRNLSNLQLDRNRISGGIPAEL----GNLT-------RLGVLSLDSN--------- 522
           + G+CR+L  L L+ N  +G IPA +    G +        R   +  D           
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 523 --ELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
             E  G     L +L      N+++    G    +  N   + +LD+S N L+G +P+E+
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 581 GRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNL 640
           G                G IP  +G+L  L  +LDLSSN L G IPQ +  LT L  ++L
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 641 SRNQLSGRIP 650
           S N LSG IP
Sbjct: 709 SNNNLSGPIP 718

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 171/540 (31%), Positives = 256/540 (47%), Gaps = 93/540 (17%)
Query: 126 SNLIDLRLATNKFSGPIPG--DIGSMSNLQLVELFNNS--FTGQIPSSLGQLKNLQHLDL 181
           ++L  L L+ N  SGP+     +GS S L+ + + +N+  F G++   L +L +L+ LDL
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 182 RMNALNYTIPPELGL---CTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEI 238
             N+++        L   C  L +LA++ N+                        +SG++
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNK------------------------ISGDV 191
Query: 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298
               +     LE L + +N+F   IP  +G  + LQ+L +  N  SG     I   T L+
Sbjct: 192 D---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
Query: 299 NLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGE 358
            L++S NQ  G IPP                     +P     + SL    +  N+  GE
Sbjct: 248 LLNISSNQFVGPIPP---------------------LP-----LKSLQYLSLAENKFTGE 281
Query: 359 LPENISRLVK-LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE-LCSGF 416
           +P+ +S     L    +  N+F G++P  FG  S        SNN FSGELP + L    
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMR 340
Query: 417 ALEELTVNGNNFTGSLPACLRNCS-NLNRVRFDGNQFTGNITKAFGVHPR--LDFIRLSG 473
            L+ L ++ N F+G LP  L N S +L  +    N F+G I      +P+  L  + L  
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
           N F G+I P    C  L +L L  N +SG IP+ LG+L++L  L L  N L G+IP +L 
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXX 593
            +  L  L L  N LTGEIP  +SN T L ++ LSNN+LTG++P+ +GR +         
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--------- 511
Query: 594 XXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
                       NL +L+    LS+NS SG IP ELG   SL  L+L+ N  +G IPA++
Sbjct: 512 ------------NLAILK----LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 291/616 (47%), Gaps = 42/616 (6%)
Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLS---SLRKVRYLDLGGNFLETPD---WSKFSSMPS 54
           +G  S L++L+V  N L+   P ++S    L  +  LDL  N +   +   W        
Sbjct: 122 LGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 55  LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
           L HL +  N+++ +    +  C NL +LD+S N  S  IP     +   L++L+++ N+ 
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKL 235
Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQL 173
            G  S  +S  + L  L +++N+F GPIP     + +LQ + L  N FTG+IP  L G  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 174 KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXX-XXXXXXXXXXXXXXXXXX 232
             L  LDL  N     +PP  G C+ L  LAL+ N                         
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 233 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK--LQYLFLYRNNFSGPIPSE 290
             SGE+  +L      L +L + +N+F G I P +    K  LQ L+L  N F+G IP  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
           +   + L +L LS N LSGTIP +                  G IP E+  + +L    +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPH 410
           + N L GE+P  +S    LN  S+  N  +G IP   G+   +L  +  SNNSFSG +P 
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPA 532
Query: 411 ELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF-DGNQFT-----GNITKAFGVHP 464
           EL    +L  L +N N F G++PA +   S      F  G ++      G   +  G   
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 465 RLDFIRLSGNQ----------------FVGEISPDWGECRNLSNLQLDRNRISGGIPAEL 508
            L+F  +   Q                + G  SP +    ++  L +  N +SG IP E+
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
           G++  L +L+L  N+++G IP ++G L  L  L+LS+N L G IP+++S LT L  +DLS
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 569 NNKLTGDVPQELGRFD 584
           NN L+G +P E+G+F+
Sbjct: 713 NNNLSGPIP-EMGQFE 727

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 202/670 (30%), Positives = 309/670 (46%), Gaps = 67/670 (10%)
Query: 14  DNNLNGAIP-FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLG-LYLNELTLEFPS 71
           ++++NG++  F+ S+   +  LDL  N L  P  +  +S+ S + L  L ++  TL+FP 
Sbjct: 86  NSHINGSVSGFKCSA--SLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 72  FI---LTCRNLTYLDLSLNKLSG--LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
            +   L   +L  LDLS N +SG  ++   L    G+L++L ++ N+  G +  +VS+  
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
           NL  L +++N FS  IP  +G  S LQ +++  N  +G    ++     L+ L++  N  
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 187 NYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNW 246
              IPP L L  +L YL+LA N+                         +GEI   L G  
Sbjct: 260 VGPIPP-LPL-KSLQYLSLAENK------------------------FTGEIPDFLSGAC 293
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGN 305
             L  L +  N F G +PP  G  + L+ L L  NNFSG +P + + K+  L+ LDLS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 306 QLSGTIPPTXXXXXXXXXXXXXXXXX-XGTIPPEIGS--MASLVAFDVNTNQLHGELPEN 362
           + SG +P +                   G I P +      +L    +  N   G++P  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELT 422
           +S   +L    +  N  SG+IP   G  S  L ++    N   GE+P EL     LE L 
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP 482
           ++ N+ TG +P+ L NC+NLN +    N+ TG I K  G    L  ++LS N F G I  
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 483 DWGECRNLSNLQLDRNRISGGIPAEL----GNLT-------RLGVLSLDSN--------- 522
           + G+CR+L  L L+ N  +G IPA +    G +        R   +  D           
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 523 --ELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
             E  G     L +L      N+++    G    +  N   + +LD+S N L+G +P+E+
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 581 GRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNL 640
           G                G IP  +G+L  L  +LDLSSN L G IPQ +  LT L  ++L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 641 SRNQLSGRIP 650
           S N LSG IP
Sbjct: 712 SNNNLSGPIP 721

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 171/540 (31%), Positives = 256/540 (47%), Gaps = 93/540 (17%)
Query: 126 SNLIDLRLATNKFSGPIPG--DIGSMSNLQLVELFNNS--FTGQIPSSLGQLKNLQHLDL 181
           ++L  L L+ N  SGP+     +GS S L+ + + +N+  F G++   L +L +L+ LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 182 RMNALNYTIPPELGL---CTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEI 238
             N+++        L   C  L +LA++ N+                        +SG++
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNK------------------------ISGDV 194
Query: 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298
               +     LE L + +N+F   IP  +G  + LQ+L +  N  SG     I   T L+
Sbjct: 195 D---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 299 NLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGE 358
            L++S NQ  G IPP                     +P     + SL    +  N+  GE
Sbjct: 251 LLNISSNQFVGPIPP---------------------LP-----LKSLQYLSLAENKFTGE 284
Query: 359 LPENISRLVK-LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE-LCSGF 416
           +P+ +S     L    +  N+F G++P  FG  S        SNN FSGELP + L    
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMR 343
Query: 417 ALEELTVNGNNFTGSLPACLRNCS-NLNRVRFDGNQFTGNITKAFGVHPR--LDFIRLSG 473
            L+ L ++ N F+G LP  L N S +L  +    N F+G I      +P+  L  + L  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
           N F G+I P    C  L +L L  N +SG IP+ LG+L++L  L L  N L G+IP +L 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXX 593
            +  L  L L  N LTGEIP  +SN T L ++ LSNN+LTG++P+ +GR +         
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--------- 514
Query: 594 XXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
                       NL +L+    LS+NS SG IP ELG   SL  L+L+ N  +G IPA++
Sbjct: 515 ------------NLAILK----LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 9/223 (4%)
Query: 432 LPACLRNCSNLNRVRFDG-NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNL 490
           +P+ L N   LN +   G N   G I  A     +L ++ ++     G I     + + L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 491 SNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF-NLNLSNNHLT 549
             L    N +SG +P  + +L  L  ++ D N ++G IP   G   KLF ++ +S N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFV 609
           G+IP + +NL  LA++DLS N L GD     G  DK              +  +LG + +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS-DK---NTQKIHLAKNSLAFDLGKVGL 242
Query: 610 LQYM--LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIP 650
            + +  LDL +N + GT+PQ L +L  L  LN+S N L G IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
           N + G IP  +  LT+L  L +    ++G IP  L ++  L  L+ S N L+G +P SIS
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKX-XXXXXXXXXXXGEIPSNLGNLFVLQYMLDL 616
           +L  L  +    N+++G +P   G F K             G+IP    NL +    +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--FVDL 204
Query: 617 SSNSLSG--------------------TIPQELGKL---TSLEILNLSRNQLSGRIPASL 653
           S N L G                    ++  +LGK+    +L  L+L  N++ G +P  L
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 654 SSMISLRSVDFSDNEL 669
           + +  L S++ S N L
Sbjct: 265 TQLKFLHSLNVSFNNL 280

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMI 657
           G IP  +  L  L Y+  ++  ++SG IP  L ++ +L  L+ S N LSG +P S+SS+ 
Sbjct: 91  GPIPPAIAKLTQLHYLY-ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 658 SLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL 703
           +L  + F  N      ++  + D    FS    ++ +   R  G++
Sbjct: 150 NLVGITFDGNR-----ISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 25  LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFIL-TCRNLTYLD 83
           +  L  VRYL LGGN L   D S    + +LT+L L  N+L    P+ +     NL  L 
Sbjct: 59  IQYLPNVRYLALGGNKLH--DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 84  LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP 143
           L  N+L  L P+ +F  L  L YLNL  NQ Q        KL+NL +L L+ N+      
Sbjct: 116 LVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 144 GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYL 203
           G    ++ L+ + L+ N           +L +LQ++ L  N  + T       C  + YL
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYL 227
Query: 204 ALAVNQ 209
           +  +N+
Sbjct: 228 SEWINK 233

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 126/291 (43%), Gaps = 31/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
           +E L +L  ++ S NQL+   P                      I P + ++ +L    +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 114
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
             NQ+    P  +  L  LN+  + +N  S     D    S   SL  +SFS+N  +   
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLK 167
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
           P  L +   LE L ++ N  +    + L   +NL  +    NQ + +IT   G+   LD 
Sbjct: 168 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 221
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
           + L+GNQ   +G +        NL++L L  N+IS   P  L  LT+L  L L +N+++ 
Sbjct: 222 LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 275
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
             P  L  L  L NL L+ N L    P  ISNL  L YL L  N ++   P
Sbjct: 276 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 41/233 (17%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           NL ++ F  NQ T +IT    +   +D   L  N  + +I+P      NL+ L L  N+I
Sbjct: 64  NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
           +   P  L NLT L  L L SN ++    + L  L  L  L+ S+N +T   P  ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
            L  LD+S+NK++ D+                         S L  L  L+ ++  ++N 
Sbjct: 174 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 206
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           +S   P  LG LT+L+ L+L+ NQL  +   +L+S+ +L  +D ++N+++ LA
Sbjct: 207 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 255

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 126/291 (43%), Gaps = 31/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
           +E L +L  ++ S NQL+   P                      I P + ++ +L    +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 114
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
             NQ+    P  +  L  LN+  + +N  S     D    S   SL  +SFS+N  +   
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLK 167
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
           P  L +   LE L ++ N  +    + L   +NL  +    NQ + +IT   G+   LD 
Sbjct: 168 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 221
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
           + L+GNQ   +G +        NL++L L  N+IS   P  L  LT+L  L L +N+++ 
Sbjct: 222 LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 275
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
             P  L  L  L NL L+ N L    P  ISNL  L YL L  N ++   P
Sbjct: 276 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 41/233 (17%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           NL ++ F  NQ T +IT    +   +D   L  N  + +I+P      NL+ L L  N+I
Sbjct: 64  NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
           +   P  L NLT L  L L SN ++    + L  L  L  L+ S+N +T   P  ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
            L  LD+S+NK++ D+                         S L  L  L+ ++  ++N 
Sbjct: 174 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 206
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           +S   P  LG LT+L+ L+L+ NQL  +   +L+S+ +L  +D ++N+++ LA
Sbjct: 207 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 255

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           ++ + L +  N L+         L K+R L L  N L+T     F  + +L  L +  N+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
           L            NL  L L  N+L  L P R+F +L KL YL+L  N+ Q        K
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
           L++L +LRL  N+      G    ++ L+ ++L NN        +   L+ L+ L L+ N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 185 ALNYTIPPELGLCTNLSYLA 204
             + T       C  + Y+A
Sbjct: 216 PWDCT-------CNGIIYMA 228

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
           NL+ L+LDRN++    P    +LT+L  LSL  NEL         KL  L  L L NN L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFD 584
                 +   LTEL  L L NN+L   VP+  G FD
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKR-VPE--GAFD 202

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 28  LRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD---L 84
           L K+ +L+L  N L+T     F  +  L  LGL  N+L    P  +    +LT LD   L
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF--DHLTQLDKLYL 114
Query: 85  SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
             N+L  L P  +F  L KL+ L L  NQ Q   +    KL+NL  L L+TN+      G
Sbjct: 115 GGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 145 DIGSMSNLQLVELFNNSF 162
               +  LQ + LF N F
Sbjct: 174 AFDRLGKLQTITLFGNQF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 28  LRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD---L 84
           L K+ +L+L  N L+T     F  +  L  LGL  N+L    P  +    +LT LD   L
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF--DHLTQLDKLYL 114
Query: 85  SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
             N+L  L P  +F  L KL+ L L  NQ Q   +    KL+NL  L L+TN+      G
Sbjct: 115 GGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 145 DIGSMSNLQLVELFNNSF 162
               +  LQ + LF N F
Sbjct: 174 AFDRLGKLQTITLFGNQF 191

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 42/233 (18%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           NL ++ F  NQ T +IT    +   +D   L  N  + +I+P      NL+ L L  N+I
Sbjct: 64  NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
           +   P  L NLT L  L L SN ++    + L  L  L  LN  N  +T   P  ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLT 172
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
            L  LD+S+NK++ D+                         S L  L  L+ ++  ++N 
Sbjct: 173 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 205
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           +S   P  LG LT+L+ L+L+ NQL  +   +L+S+ +L  +D ++N+++ LA
Sbjct: 206 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 254

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 42/233 (18%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           NL ++ F  NQ T +IT    +   +D   L  N  + +I+P      NL+ L L  N+I
Sbjct: 64  NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
           +   P  L NLT L  L L SN ++    + L  L  L  LN  N  +T   P  ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLT 172
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
            L  LD+S+NK++ D+                         S L  L  L+ ++  ++N 
Sbjct: 173 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 205
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           +S   P  LG LT+L+ L+L+ NQL  +   +L+S+ +L  +D ++N+++ LA
Sbjct: 206 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 254

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 66/162 (40%), Gaps = 27/162 (16%)
Query: 25  LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
           +  L  VRYL LGGN L        S++  LT                     NLTYL L
Sbjct: 59  IQYLPNVRYLALGGNKLH-----DISALKELT---------------------NLTYLIL 92
Query: 85  SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
           + N+L  L P  +F  L  L+ L L ENQ Q        KL+NL  L L  N+      G
Sbjct: 93  TGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 145 DIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
               ++NL  ++L NN           +L  L+ L L  N L
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
           N+ YL L  NKL  +   +  TNL    YL LT NQ Q   +    KL+NL +L L  N+
Sbjct: 64  NVRYLALGGNKLHDISALKELTNL---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
                 G    ++NL  + L++N           +L NL  LDL  N L           
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 198 TNLSYLALAVNQ 209
           T L  L+L  NQ
Sbjct: 181 TQLKQLSLNDNQ 192

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
           +LT L L  NKL  L P  +F  L  L YLNL+ NQ Q   +    KL+ L +L L TN+
Sbjct: 53  SLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
                 G    ++ L+ + L+ N           +L +LQ++ L  N  + T P      
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------ 165
Query: 198 TNLSYLALAVNQ 209
             + YL+  +N+
Sbjct: 166 -GIRYLSEWINK 176

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 28/305 (9%)
Query: 86  LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
           L++++ L  +RL   ++  +EYLN LT+  F      +++ L NL   +D+ +  N+ + 
Sbjct: 40  LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
             P  + +++NL  + LFNN  T   P  L  L NL  L+L  N ++  I    GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGL-TSL 153
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
             L  + NQ                         S ++S  +++   T LESL I  N+ 
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDIS------SNKVSDISVLAKLTNLESL-IATNNQ 206
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
           + +I P +G+LT L  L L  N         +  LT+L +LDL+ NQ+S   P       
Sbjct: 207 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 260
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
                          I P  G + +L   ++N NQL    P  IS L  L   +++ NN 
Sbjct: 261 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Query: 380 SGSIP 384
           S   P
Sbjct: 318 SDISP 322

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 124/291 (42%), Gaps = 32/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
           +E L +L  ++ S NQL+   P                      I P + ++ +L    +
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
             NQ+    P  +  L  LN+  + +N  S     D    S   SL  +SF N     + 
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLK- 171
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
              L +   LE L ++ N  +    + L   +NL  +    NQ + +IT   G+   LD 
Sbjct: 172 --PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 225
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
           + L+GNQ   +G ++       NL++L L  N+IS   P  L  LT+L  L L +N+++ 
Sbjct: 226 LSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
             P  L  L  L NL L+ N L    P  ISNL  L YL L  N ++   P
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 46/235 (19%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           NL ++ F  NQ T +IT    +   +D   L  N  + +I+P      NL+ L L  N+I
Sbjct: 69  NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 124
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLN-LS-NNHLTGEIPKSISN 558
           +   P  L NLT L  L L SN ++     D+  L  L +L  LS  N +T   P  ++N
Sbjct: 125 TDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSS 618
           LT L  LD+S+NK++ D+                         S L  L  L+ ++  ++
Sbjct: 176 LTTLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATN 208
Query: 619 NSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           N +S   P  LG LT+L+ L+L+ NQL  +   +L+S+ +L  +D ++N+++ LA
Sbjct: 209 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 259

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 124/291 (42%), Gaps = 32/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
           +E L +L  ++ S NQL+   P                      I P + ++ +L    +
Sbjct: 63  VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 118
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
             NQ+    P  +  L  LN+  + +N  S     D    S   SL  +SF N     + 
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLK- 170
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
              L +   LE L ++ N  +    + L   +NL  +    NQ + +IT   G+   LD 
Sbjct: 171 --PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 224
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
           + L+GNQ   +G ++       NL++L L  N+IS   P  L  LT+L  L L +N+++ 
Sbjct: 225 LSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 278
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
             P  L  L  L NL L+ N L    P  ISNL  L YL L  N ++   P
Sbjct: 279 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 46/235 (19%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           NL ++ F  NQ T +IT    +   +D   L  N  + +I+P      NL+ L L  N+I
Sbjct: 68  NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 123
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLN-LS-NNHLTGEIPKSISN 558
           +   P  L NLT L  L L SN ++     D+  L  L +L  LS  N +T   P  ++N
Sbjct: 124 TDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSS 618
           LT L  LD+S+NK++ D+                         S L  L  L+ ++  ++
Sbjct: 175 LTTLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATN 207
Query: 619 NSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           N +S   P  LG LT+L+ L+L+ NQL  +   +L+S+ +L  +D ++N+++ LA
Sbjct: 208 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 258

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L+ L  L + DN +    P  L +L K+  L+L GN L+  + S  + + S+  L L   
Sbjct: 68  LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTST 123
Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
           ++T   P   L+   + YLDL  N+++ + P    TN   L+YL++  NQ    L+P ++
Sbjct: 124 QITDVTPLAGLSNLQVLYLDL--NQITNISPLAGLTN---LQYLSIGNNQV-NDLTP-LA 176
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176
            LS L  LR   NK S   P  + S+ NL  V L +N  +   P  L  L NL
Sbjct: 177 NLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNL 225

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 30  KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKL 89
           + R LDLG N ++T +  +F+S P L  L L  N ++   P       NL  L L  N+L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 90  SGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSM 149
             LIP  +FT L  L  L+++EN+    L      L NL  L +  N            +
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           ++L+ + L   + T     +L  L  L  L LR
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 47  SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
           S FS    L  L L  NE+     +      +L  L+LS N L G I  R+F NL KLE 
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEV 351
Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
           L+L+ N  +     +   L NL +L L TN+      G    +++LQ + L  N +    
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
Query: 167 P 167
           P
Sbjct: 412 P 412

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	785
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-176
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-165
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-123
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-104
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-85
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-83
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-40
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-11
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-10
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	9e-07
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-06
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	7e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-04
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-05
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-04
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-04
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  579 bits (1495), Expect = 0.0
 Identities = 211/680 (31%), Positives = 326/680 (47%), Gaps = 23/680 (3%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             ++ +   S   N    A+   L SL  +  L L  + +     S F    SLT L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLS 108

Query: 62  LNELTLEFPSF--ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
            N L+    +   + +C  L +L++S N L           L  LE L+L+ N   G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 120 PNV---SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176
                      L  L ++ NK SG +   +    NL+ +++ +N+F+  IP  LG    L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225

Query: 177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236
           QHLD+  N L+      +  CT L  L ++ NQ  G +P     L  L  L L++N  +G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLT 295
           EI   L G    L  L +  N F G +PP  G  + L+ L L  NNFSG +P + + K+ 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 296 SLENLDLSGNQLSGTIPPTLWNLT-NLLSLQLFSNNLSGTIPPEIG--SMASLVAFDVNT 352
            L+ LDLS N+ SG +P +L NL+ +LL+L L SNN SG I P +      +L    +  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 353 NQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHEL 412
           N   G++P  +S   +L    +  N  SG+IP   G  S  L ++    N   GE+P EL
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQEL 462

Query: 413 CSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS 472
                LE L ++ N+ TG +P+ L NC+NLN +    N+ TG I K  G    L  ++LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL 532
            N F G I  + G+CR+L  L L+ N  +G IPA +   +      + +N + GK    +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYI 578

Query: 533 GKLVKLFNLNLSNN--HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLN 590
                    + + N     G   + ++ L+     ++++    G           ++ L+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 591 LSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIP 650
           +S+N LSG IP  +G++  L   L+L  N +SG+IP E+G L  L IL+LS N+L GRIP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 651 ASLSSMISLRSVDFSDNELT 670
            ++S++  L  +D S+N L+
Sbjct: 698 QAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  543 bits (1402), Expect = 0.0
 Identities = 205/661 (31%), Positives = 307/661 (46%), Gaps = 48/661 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIP--FQLSSLRKVRYLDLGGNFLE-TPDWSKFSSMPSLTHL 58
              + L  L +  N+L+G +     L S   +++L++  N L+     S    + SL  L
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 59  GLYLNELTLEFPSFILT---CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
            L  N ++       +    C  L +L +S NK+SG +     +    LE+L+++ N F 
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS 213

Query: 116 GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKN 175
             + P +   S L  L ++ NK SG     I + + L+L+ + +N F G IP     LK+
Sbjct: 214 TGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270

Query: 176 LQHLDLRMNALNYTIPPEL-GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
           LQ+L L  N     IP  L G C  L+ L L+ N   G +P    + S L  L LS N  
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIG-LLTKLQYLFLYRNNFSGPIPSEIEK 293
           SGE+  + +     L+ L +  N F G +P  +  L   L  L L  NNFSGPI   + +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 294 --LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVN 351
               +L+ L L  N  +G IPPTL N + L+SL L  N LSGTIP  +GS++ L    + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 352 TNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE 411
            N L GE+P+ +  +  L    +  N+ +G IP      + +L  +S SNN  +GE+P  
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKW 509

Query: 412 LCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL 471
           +     L  L ++ N+F+G++PA L +C +L  +  + N F G I  A            
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF---------- 559

Query: 472 SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSN--ELTGKIP 529
                              S   +  N I+G     + N           N  E  G   
Sbjct: 560 -----------------KQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 530 TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL 589
             L +L      N+++    G    +  N   + +LD+S N L+G +P+E+G    L  L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 590 NLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRI 649
           NL HND+SG IP  +G+L  L   LDLSSN L G IPQ +  LT L  ++LS N LSG I
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 650 P 650
           P
Sbjct: 721 P 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  524 bits (1353), Expect = e-176
 Identities = 199/612 (32%), Positives = 293/612 (47%), Gaps = 21/612 (3%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLE---TPDWSKFSSMPSLTH 57
           G  S L++L+V  N L+          L  +  LDL  N +       W        L H
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182

Query: 58  LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117
           L +  N+++ +    +  C NL +LD+S N  S  IP     +   L++L+++ N+  G 
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGD 238

Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNL 176
            S  +S  + L  L +++N+F GPIP     + +LQ + L  N FTG+IP  L G    L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPL-SLSNLSKLNDLGLSDNFLS 235
             LDL  N     +PP  G C+ L  LAL+ N  SG LP+ +L  +  L  L LS N  S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIG--LLTKLQYLFLYRNNFSGPIPSEIEK 293
           GE+  +L      L +L + +N+F G I P +       LQ L+L  N F+G IP  +  
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353
            + L +L LS N LSGTIP +L +L+ L  L+L+ N L G IP E+  + +L    ++ N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
            L GE+P  +S    LN  S+  N  +G IP   G+   +L  +  SNNSFSG +P EL 
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELG 535

Query: 414 SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSG 473
              +L  L +N N F G++PA +   S         N   G                 +G
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----ANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 474 N--QFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD 531
           N  +F G  S         +   +      G       N   +  L +  N L+G IP +
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNL 591
           +G +  LF LNL +N ++G IP  + +L  L  LDLS+NKL G +PQ +     L  ++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 592 SHNDLSGEIPSN 603
           S+N+LSG IP  
Sbjct: 712 SNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  495 bits (1276), Expect = e-165
 Identities = 182/612 (29%), Positives = 292/612 (47%), Gaps = 28/612 (4%)

Query: 75  TCRN--LTYLDLS---LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLI 129
           TCR+  +T +DLS   LN     +   L  +L  LE L L+ +   G +       ++L 
Sbjct: 46  TCRDDKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSV-SGFKCSASLT 103

Query: 130 DLRLATNKFSGPIP--GDIGSMSNLQLVELFNNSFTGQIPSSLG-QLKNLQHLDLRMNAL 186
            L L+ N  SGP+     +GS S L+ + + +N+       S G +L +L+ LDL  N++
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 187 NYTIPPEL---GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
           +            C  L +LA++ N++SG + +S      L  L +S N  S  I    +
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF--L 219

Query: 244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS 303
           G+ + L+ L I  N   G+    I   T+L+ L +  N F GPIP     L SL+ L L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277

Query: 304 GNQLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP-E 361
            N+ +G IP  L      L  L L  N+  G +PP  GS + L +  +++N   GELP +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 362 NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF--ALE 419
            + ++  L    +  N FSG +P      S SL+ +  S+N+FSG +   LC      L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
           EL +  N FTG +P  L NCS L  +    N  +G I  + G   +L  ++L  N   GE
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF 539
           I  +    + L  L LD N ++G IP+ L N T L  +SL +N LTG+IP  +G+L  L 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
            L LSNN  +G IP  + +   L +LDL+ N   G +P  + +     S  ++ N ++G+
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK 573

Query: 600 IPSNLGNLFVLQYM-LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMIS 658
               + N  + +      +     G   ++L +L++    N++     G    +  +  S
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 659 LRSVDFSDNELT 670
           +  +D S N L+
Sbjct: 634 MMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  386 bits (994), Expect = e-123
 Identities = 169/572 (29%), Positives = 253/572 (44%), Gaps = 88/572 (15%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +   +EL+ L++  N   G IP                                      
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLP----------------------------------- 267

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
                           ++L YL L+ NK +G IP+ L      L  L+L+ N F G + P
Sbjct: 268 ---------------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGD-IGSMSNLQLVELFNNSFTGQIPSSLGQLK-NLQH 178
                S L  L L++N FSG +P D +  M  L++++L  N F+G++P SL  L  +L  
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 179 LDLRMNALNYTIPPELGLC--TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236
           LDL  N  +  I P L       L  L L  N  +G +P +LSN S+L  L LS N+LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTS 296
            I ++L G+ ++L  L++  N   G IP E+  +  L+ L L  N+ +G IPS +   T+
Sbjct: 433 TIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 297 LENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
           L  + LS N+L+G IP  +  L NL  L+L +N+ SG IP E+G   SL+  D+N     
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN----- 546

Query: 357 GELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
                              TN F+G+IP    K S  +     + N  +G+    + +  
Sbjct: 547 -------------------TNLFNGTIPAAMFKQSGKI-----AANFIAGKRYVYIKNDG 582

Query: 417 ALEELTV--NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN 474
             +E     N   F G     L   S  N        + G+ +  F  +  + F+ +S N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 475 QFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGK 534
              G I  + G    L  L L  N ISG IP E+G+L  L +L L SN+L G+IP  +  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 535 LVKLFNLNLSNNHLTGEIPKS--ISNLTELAY 564
           L  L  ++LSNN+L+G IP+           +
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  333 bits (857), Expect = e-104
 Identities = 136/641 (21%), Positives = 224/641 (34%), Gaps = 47/641 (7%)

Query: 54  SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113
           S         +LT + P  + T  N+T L+L+ N+L  L     FT   +L  L++  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNT 60

Query: 114 FQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQL 173
                     KL  L  L L  N+ S          +NL  + L +NS      +   + 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 174 KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLP--LSLSNLSKLNDLGLSD 231
           KNL  LDL  N L+ T         NL  L L+ N++       L +   S L  L LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 232 NFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL---LTKLQYLFLYRNNFSGPIP 288
           N +    S         L  L + N     ++  ++ L    T ++ L L  +  S    
Sbjct: 181 NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 289 SEIE--KLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346
           +     K T+L  LDLS N L+     +   L  L    L  NN+       +  + ++ 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
             ++  +     +                  +        F      L +++  +N   G
Sbjct: 300 YLNLKRSFTKQSIS---------------LASLPKIDDFSFQWL-KCLEHLNMEDNDIPG 343

Query: 407 ELPHELCSGFALEELTVNGNNF-----TGSLPACLRNCSNLNRVRFDGNQFTGNITKAFG 461
              +       L+ L+++ +       T      L + S L+ +    N+ +   + AF 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFS 402

Query: 462 VHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLD 520
               L+ + L  N+   E++   W    N+  + L  N+           +  L  L L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 521 SNELTG--KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT----- 573
              L      P+    L  L  L+LSNN++       +  L +L  LDL +N L      
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 574 ---GDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELG 630
              G     L     L  LNL  N           +LF L+  +DL  N+L+        
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI-IDLGLNNLNTLPASVFN 581

Query: 631 KLTSLEILNLSRNQLSGRIPASLS-SMISLRSVDFSDNELT 670
              SL+ LNL +N ++         +  +L  +D   N   
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  315 bits (808), Expect = 7e-97
 Identities = 143/668 (21%), Positives = 221/668 (33%), Gaps = 40/668 (5%)

Query: 32  RYLDLGGNFLET-PDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS 90
              D     L   PD        ++T L L  N+L     +       LT LD+  N +S
Sbjct: 7   EVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 91  GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMS 150
            L PE L   L  L+ LNL  N+         +  +NL +L L +N              
Sbjct: 63  KLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC--TNLSYLALAVN 208
           NL  ++L +N  +     +  QL+NLQ L L  N +      EL +   ++L  L L+ N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 209 QLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG--NWTELESLQIQNNSFMGNIPPE 266
           Q+    P     + +L  L L++  L   ++  L      T + +L + N+         
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 267 IGLL--TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLT----- 319
              L  T L  L L  NN +         L  LE   L  N +      +L  L      
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 320 ----NLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVF 375
               +     +   +L          +  L   ++  N + G      + L+ L   S+ 
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 376 TNNFSGSIPGD---FGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSL 432
            +  S     +          L  ++ + N  S            LE L +  N     L
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 433 PA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF--VGEISPDWGECRN 489
                R   N+  +    N++      +F + P L  + L       V      +   RN
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT--------GKIPTDLGKLVKLFNL 541
           L+ L L  N I+      L  L +L +L L  N L         G     L  L  L  L
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 542 NLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP 601
           NL +N       +   +L EL  +DL  N L             L SLNL  N ++    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 602 SNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRI----PASLSSMI 657
              G  F     LD+  N    T       +  +   + +  +LS       P       
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF- 660

Query: 658 SLRSVDFS 665
            +R  D S
Sbjct: 661 PVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  243 bits (622), Expect = 3e-70
 Identities = 96/464 (20%), Positives = 159/464 (34%), Gaps = 25/464 (5%)

Query: 229 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288
            S   L+ ++  +L  N   +  L + +N             ++L  L +  N  S   P
Sbjct: 11  CSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAF 348
              +KL  L+ L+L  N+LS     T    TNL  L L SN++            +L+  
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS-PSLINVSFSNNSFSGE 407
           D++ N L         +L  L +  +  N        +   F+  SL  +  S+N     
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 408 LPHELCSGFALEELTVNGNNFTGSLPACLR---NCSNLNRVRFDGNQFTGNITKAFG--V 462
            P    +   L  L +N      SL   L      +++  +    +Q +      F    
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 463 HPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSN 522
              L  + LS N      +  +     L    L+ N I       L  L  +  L+L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 523 ---------ELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
                     L          L  L +LN+ +N + G      + L  L YL LSN+  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 574 GDVPQELG----RFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIP-QE 628
                           L  LNL+ N +S         L  L+  LDL  N +   +  QE
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV-LDLGLNEIGQELTGQE 425

Query: 629 LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
              L ++  + LS N+       S + + SL+ +      L  +
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (370), Expect = 1e-36
 Identities = 70/362 (19%), Positives = 123/362 (33%), Gaps = 47/362 (12%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
              L  L+YLS+ ++  +                        T +     +   L  L L
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTL--------------------TNETFVSLAHSPLHILNL 388

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             N+++           +L  LDL LN++   +  + +  L  +  + L+ N++      
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 121 NVSKLSNLIDLRLATNKFSG--PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
           + + + +L  L L           P     + NL +++L NN+        L  L+ L+ 
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 179 LDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238
           LDL+ N L                  L  +   GG    L  LS L+ L L  N     I
Sbjct: 509 LDLQHNNLAR----------------LWKHANPGGPIYFLKGLSHLHILNLESNGFDE-I 551

Query: 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK-LTSL 297
              +  +  EL+ + +  N+              L+ L L +N  +            +L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 298 ENLDLSGNQLSGTIPPTLW-----NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNT 352
             LD+  N    T     W     N T+    +L S+ L  T P   G    +  FD ++
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF--PVRLFDTSS 669

Query: 353 NQ 354
            +
Sbjct: 670 CK 671

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  309 bits (794), Expect = 2e-95
 Identities = 87/603 (14%), Positives = 199/603 (33%), Gaps = 85/603 (14%)

Query: 100 NLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP----IPGDIGSMSNLQLV 155
           + G++  L+L      G++   + +L+ L  L L ++          P  I +  + +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 156 ELFNNSFTGQIPSSLG--QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG 213
           +     +              +L    +  +    +I     +    + +    N ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 273
           +  ++  L+KL    + ++    E            E+   +          +   L  L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEA------WENENSEYAQQYKTEDLKWDNLKDL 251

Query: 274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQL--------SGTIPPTLWNLTNLLSLQ 325
             + +Y       +P+ ++ L  ++ ++++ N+                      +  + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 326 LFSNNL-SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP 384
           +  NNL +  +   +  M  L   +   NQL G+LP      +KL   ++  N  +  IP
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IP 369

Query: 385 GDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNR 444
            +F  F+  + N+SF++N     +P+                          ++ S ++ 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLK-YIPNIF----------------------DAKSVSVMSA 406

Query: 445 VRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGI 504
           + F  N+      K F                   + P   +  N+S++ L  N+IS   
Sbjct: 407 IDFSYNEIGSVDGKNF-----------------DPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 505 PAELGNLTRLGVLSLDSNELTG-------KIPTDLGKLVKLFNLNLSNNHLTGEIPKSI- 556
                  + L  ++L  N LT            +      L +++L  N LT  +     
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFR 508

Query: 557 -SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH------NDLSGEIPSNLGNLFV 609
            + L  L  +DLS N  +   P +      L    + +      N    E P  +     
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 610 LQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
           L   L + SN +   + +++    ++ +L++  N       + +   I         ++ 
Sbjct: 568 LTQ-LQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 670 TEL 672
            ++
Sbjct: 624 QDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  273 bits (700), Expect = 8e-82
 Identities = 84/517 (16%), Positives = 167/517 (32%), Gaps = 48/517 (9%)

Query: 193 ELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL---IGNWTEL 249
            L     ++ L+L     SG +P ++  L++L  L L  +             I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 250 ESLQIQNNSFMGNIPPEIGLL--TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQL 307
           E  Q     +             + L    +  +     I            +    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 308 SGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV 367
           +  +   +  LT L    + ++        E     +         Q +         L 
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLK 249

Query: 368 KLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF--------SGELPHELCSGFALE 419
            L    V+       +P       P +  ++ + N            +   +   G  ++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 420 ELTVNGNNF-TGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVG 478
            + +  NN  T  +   L+    L  +    NQ  G +  AFG   +L  + L+ NQ   
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITE 367

Query: 479 EISPDWGECRNLSNLQLDRNRISGGIPA--ELGNLTRLGVLSLDSNELTG-------KIP 529
             +   G    + NL    N++   IP   +  +++ +  +    NE+          + 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 530 TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG-------DVPQELGR 582
               K + + ++NLSNN ++    +  S  + L+ ++L  N LT        D  +    
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 583 FDKLLSLNLSHNDLSGEIPS-NLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEIL--- 638
              L S++L  N L+          L  L   +DLS NS S   P +    ++L+     
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVG-IDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 639 ---NLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
              +   N+     P  ++   SL  +    N++ ++
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  260 bits (667), Expect = 4e-77
 Identities = 79/612 (12%), Positives = 162/612 (26%), Gaps = 103/612 (16%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSS--------- 51
           +     +  LS+     +G +P  +  L ++  L LG +  +  +               
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 52  ---------------------MPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS 90
                                   L    +  +                T +    N ++
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 91  GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMS 150
            +        L KL    +  + F  +      +  N         +          ++ 
Sbjct: 197 FVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENEN-----SEYAQQYKTEDLKWDNLK 249

Query: 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQL 210
           +L  VE++N     ++P+ L  L  +Q +++  N                  ++    + 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG----------------ISGEQLKD 293

Query: 211 SGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 270
                       K+  + +  N L        +    +L  L+   N   G   P  G  
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSE 352

Query: 271 TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL--WNLTNLLSLQLFS 328
            KL  L L  N  +    +       +ENL  + N+L   IP      +++ + ++    
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411

Query: 329 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFG 388
           N +                           L     + + ++  ++  N  S      F 
Sbjct: 412 NEIGSVDGKNFDP-----------------LDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 389 KFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFD 448
             S  L +++   N  +  +P                           +N   L  +   
Sbjct: 455 TGS-PLSSINLMGNMLTE-IPKNSLK----------------DENENFKNTYLLTSIDLR 496

Query: 449 GNQFTGNITK-AFGVHPRLDFIRLSGNQFVGEISPDWGECRNL------SNLQLDRNRIS 501
            N+ T           P L  I LS N F  +          L      +      NR  
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 502 GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTE 561
              P  +     L  L + SN++   +   +     +  L++ +N         +    E
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 562 LAYLDLSNNKLT 573
                L  +K  
Sbjct: 613 AGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (539), Expect = 4e-59
 Identities = 64/442 (14%), Positives = 148/442 (33%), Gaps = 52/442 (11%)

Query: 250 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG 309
           ++L  +N S  G            + L    + +       +     +  L L G   SG
Sbjct: 40  DALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSNGRVTGLSLEGFGASG 95

Query: 310 TIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKL 369
            +P  +  LT L  L L S+                              P+ IS  +  
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFG--------------------PKGISANMSD 135

Query: 370 NKFSVFTNNFSGSIPGDFGKFS-PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNF 428
            +      ++  +      +     LI    +++     +           ++    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 429 TGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECR 488
           T  +   +   + L +     + F          +   ++ +             W   +
Sbjct: 196 T-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLK 249

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT--------GKIPTDLGKLVKLFN 540
           +L+++++        +P  L  L  + ++++  N            +   D     K+  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 541 LNLSNNHL-TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
           + +  N+L T  +  S+  + +L  L+   N+L G      G   KL SLNL++N ++  
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEI 368

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQ--ELGKLTSLEILNLSRNQLSG-------RIP 650
             +  G    ++  L  + N L   IP   +   ++ +  ++ S N++          + 
Sbjct: 369 PANFCGFTEQVEN-LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 651 ASLSSMISLRSVDFSDNELTEL 672
            +    I++ S++ S+N++++ 
Sbjct: 427 PTPFKGINVSSINLSNNQISKF 448

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  282 bits (723), Expect = 2e-85
 Identities = 102/555 (18%), Positives = 177/555 (31%), Gaps = 36/555 (6%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
            +  +L L+ N           S   LQ+++L           +   L +L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGN 245
           +           ++L  L      L+      + +L  L +L ++ N +          N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 246 WTELESLQIQNNSFMGNIPPEIGLLTKLQY----LFLYRNNFSGPIPSEIEKLTSLENLD 301
            T LE L + +N        ++ +L ++      L L  N  +   P    K   L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLT 206

Query: 302 LSGNQLSGTIPPT-LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           L  N  S  +  T +  L  L   +L           E    ++L               
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL--------------- 251

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           E +  L        + + +   I   F     ++ + S  + +           G   + 
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIERVKDFSYNFG--WQH 308

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ--FVG 478
           L +    F       L++   L           G    +    P L+F+ LS N   F G
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 479 EISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVK 537
             S       +L  L L  N +   + +    L +L  L    + L           L  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDV-PQELGRFDKLLSLNLSHNDL 596
           L  L++S+ H         + L+ L  L ++ N    +  P        L  L+LS   L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 597 SGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM 656
               P+   +L  LQ  L++S N+           L SL++L+ S N +       L   
Sbjct: 483 EQLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 657 I-SLRSVDFSDNELT 670
             SL  ++ + N+  
Sbjct: 542 PSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  276 bits (708), Expect = 2e-83
 Identities = 112/613 (18%), Positives = 202/613 (32%), Gaps = 48/613 (7%)

Query: 68  EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
           + P  +    +   LDLS N L  L     F +  +L+ L+L+  + Q         LS+
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
           L  L L  N       G    +S+LQ +     +        +G LK L+ L++  N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 188 YT-IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW 246
              +P      TNL +L L+ N++       L  L ++  L LS                
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS---------------- 181

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGN 305
                L +  N     I P      +L  L L  N  S  +    I+ L  LE   L   
Sbjct: 182 -----LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 306 QLSGTI---PPTLWNLTNLLSLQLFSNNLS------GTIPPEIGSMASLVAFDVNTNQLH 356
           +              L  L +L +    L+        I      + ++ +F + +  + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 357 GELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
               ++ S         +    F             SL  ++F++N              
Sbjct: 296 R--VKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
              +L+ NG +F G         ++L  +    N     ++  F    +L+ +    +  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 477 VGEISPD-WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGK 534
                   +   RNL  L +               L+ L VL +  N        D   +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           L  L  L+LS   L    P + ++L+ L  L++S+N             + L  L+ S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 595 DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE--LGKLTSLEILNLSRNQLSGRIPAS 652
            +       L +       L+L+ N  + T   +  L  +     L +   ++    P+ 
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

Query: 653 LSSMISLRSVDFS 665
              M  + S++ +
Sbjct: 589 KQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  257 bits (658), Expect = 4e-76
 Identities = 114/627 (18%), Positives = 202/627 (32%), Gaps = 68/627 (10%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
              + L +  N L     +   S  +++ LDL    ++T +   + S+  L+ L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG-KLSPNVS 123
           +            +L  L      L+ L       +L  L+ LN+  N  Q  KL    S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE----LFNNSFTGQIPSSLGQLKNLQHL 179
            L+NL  L L++NK       D+  +  + L+     L  N      P +  ++  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 180 DLRMNALNYTIPPELGL-CTNLSYLALAVNQLSGG---LPLSLSNLSKLNDLGLSDNFLS 235
            LR N  +  +          L    L + +            S L  L +L + +  L+
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLT 295
                                + ++ +I      LT +    L                 
Sbjct: 266 -------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF 304

Query: 296 SLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355
             ++L+L   +        L +L  L        +  G        + SL   D++ N L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 356 HGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSG 415
                                 +F G         + SL  +  S N     +       
Sbjct: 360 ----------------------SFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 416 FALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN 474
             LE L    +N           +  NL  +              F     L+ ++++GN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 475 QFVGEISPD-WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
            F     PD + E RNL+ L L + ++    P    +L+ L VL++  N           
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNL-TELAYLDLSNNKLTGDVPQE--LGRFDKLLSLN 590
            L  L  L+ S NH+     + + +  + LA+L+L+ N        +  L        L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 591 LSHNDLSGEIPSNLGNLFVLQYMLDLS 617
           +    +    PS+   + VL   L+++
Sbjct: 576 VEVERMECATPSDKQGMPVLS--LNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  248 bits (634), Expect = 1e-72
 Identities = 102/531 (19%), Positives = 180/531 (33%), Gaps = 46/531 (8%)

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
            +    +F  +IP +L    + ++LDL  N L +           L  L L+  ++    
Sbjct: 12  YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 274
             +  +LS L+ L L+ N +   ++       + L+ L     +        IG L  L+
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 275 YLFLYRNNF-SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL----LSLQLFSN 329
            L +  N   S  +P     LT+LE+LDLS N++       L  L  +    LSL L  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPE----NISRLVKLNKFSVFTNNFSGSIPG 385
            ++  I P       L    +  N     + +     ++ L           N       
Sbjct: 188 PMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 386 DFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRV 445
           D       L N++      +                    + +   +       +N++  
Sbjct: 247 DKSALE-GLCNLTIEEFRLA------------------YLDYYLDDIIDLFNCLTNVSSF 287

Query: 446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIP 505
                        ++  +     + L   +F G+           S  +L      GG  
Sbjct: 288 SLVSVTIERVKDFSY--NFGWQHLELVNCKF-GQFPTLK----LKSLKRLTFTSNKGGNA 340

Query: 506 AELGNLTRLGVLSLDSNELT--GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELA 563
               +L  L  L L  N L+  G           L  L+LS N +   +  +   L +L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399

Query: 564 YLDLSNNKLTGDVPQE-LGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
           +LD  ++ L              L+ L++SH             L  L+  L ++ NS  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAGNSFQ 458

Query: 623 GTI-PQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
               P    +L +L  L+LS+ QL    P + +S+ SL+ ++ S N    L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  239 bits (611), Expect = 2e-69
 Identities = 108/540 (20%), Positives = 186/540 (34%), Gaps = 35/540 (6%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             LS L  L +  N +        S L  ++ L      L + +      + +L  L + 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 62  LNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY----LNLTENQFQG 116
            N +   + P +     NL +LDLS NK+  +        L ++      L+L+ N    
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 117 KLSPNVSKLSNLIDLRLATNKFSGPIPGD-IGSMSNLQLVELFNNSFTGQ------IPSS 169
            + P   K   L  L L  N  S  +    I  ++ L++  L    F  +        S+
Sbjct: 192 -IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 170 LGQLKNLQHLDLRMNALNYT---IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND 226
           L  L NL   + R+  L+Y    I       TN+S  +L    +        S       
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQH 308

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN--NFS 284
           L L +           + +   L     +     G        L  L++L L RN  +F 
Sbjct: 309 LELVNCKFGQ-FPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMA 343
           G         TSL+ LDLS N +  T+      L  L  L    +NL       +  S+ 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 344 SLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS 403
           +L+  D++            + L  L    +  N+F  +   D      +L  +  S   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 404 FSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH 463
                P    S  +L+ L ++ NNF        +  ++L  + +  N    +  +     
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 464 PR-LDFIRLSGNQFVGEISPDW--GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLD 520
           P  L F+ L+ N F             ++   L ++  R+    P++   +    VLSL+
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP---VLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (355), Expect = 5e-35
 Identities = 72/416 (17%), Positives = 121/416 (29%), Gaps = 57/416 (13%)

Query: 265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSL 324
           P + ++  + Y  +  N +   IP  +    S +NLDLS N L      + ++   L  L
Sbjct: 2   PCVEVVPNITYQCMELNFYK--IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 325 QLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP 384
            L    +         S++ L    +  N +        S L  L K      N +    
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 385 GDFGKFSPSLINVSFSNNSF-SGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLN 443
              G    +L  ++ ++N   S +LP    +   LE L ++ N         LR    + 
Sbjct: 118 FPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM- 175

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGG 503
                                    + LS N     I P   +   L  L L  N  S  
Sbjct: 176 -------------------PLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 504 IPAE-LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
           +    +  L  L V  L   E                    +  +L      ++  L  L
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFR------------------NEGNLEKFDKSALEGLCNL 257

Query: 563 AYLDLSNNKL---TGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSN 619
              +     L     D+         + S +L    +      +    F  Q+ L+L + 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQH-LELVNC 314

Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVT 675
                   +L  L  L   +            S   + SL  +D S N L+     
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCC 365

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  267 bits (685), Expect = 8e-78
 Identities = 96/616 (15%), Positives = 194/616 (31%), Gaps = 91/616 (14%)

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGS 148
           + G  P     N G++  L+L     +G++   + +L+ L  L   T+  +         
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 149 MSNLQLVELFNNSFTGQIPS-SLGQLKNLQHLDLRMNALNY-----TIPPELGLCTNLSY 202
                + E   +          L   + L   DL  +A+N       I  +  +    + 
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 262
           +    N+++  +  ++  L+KL  +  +++  + +  A       + E           N
Sbjct: 430 IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYEN 482

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG---------TIPP 313
                  L  L  + LY       +P  +  L  L++L+++ N+             +  
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 314 TLWNLTNLLSLQLFSNNLSGTIPPE--IGSMASLVAFDVNTNQLHGELPENISRLVKLNK 371
                  +    +  NNL    P    +  M  L   D   N++   L       VKL  
Sbjct: 543 DEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTD 599

Query: 372 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGS 431
             +  N     IP DF  F+  +  + FS+N     +P+                     
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF------------------- 638

Query: 432 LPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLS 491
                ++   +  V F  N+                             S D  +  N S
Sbjct: 639 ---NAKSVYVMGSVDFSYNKIGSEGRNIS-------------------CSMDDYKGINAS 676

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT-------GKIPTDLGKLVKLFNLNLS 544
            + L  N I           + +  + L +N +T            +      L  ++L 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 545 NNHLTGEIPKSI--SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH------NDL 596
            N LT  +      + L  L+ +D+S N  +   P +     +L +  + H      N +
Sbjct: 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 597 SGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM 656
             + P+ +     L   L + SN +   + ++L     L IL+++ N        S+   
Sbjct: 795 LRQWPTGITTCPSLIQ-LQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPY 850

Query: 657 ISLRSVDFSDNELTEL 672
           I         ++  ++
Sbjct: 851 IEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  264 bits (676), Expect = 2e-76
 Identities = 83/551 (15%), Positives = 165/551 (29%), Gaps = 55/551 (9%)

Query: 160 NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLS 219
           + +  Q    L     +  L L        +P  +G  T L  L+   +  +    L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 220 NLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF-----MGNIPPEIGLLTKLQ 274
                +      + +        +     L    +  ++      M  I  +  +  K  
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 275 YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT 334
            +    N  +  I   I++LT L+ +  + +  +       W   N              
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQYEN 482

Query: 335 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG---------SIPG 385
                 ++  L   ++       +LP+ +  L +L   ++  N              +  
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 386 DFGKFSPSLINVSFSNNSFSGELPHE--LCSGFALEELTVNGNNFTGSLPACLRNCSNLN 443
           D     P +       N+   E P    L     L  L    N     L A       L 
Sbjct: 543 DEDTG-PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLT 598

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ---LDRNRI 500
            ++ D NQ             +++ +  S N+   +  P+    +++  +       N+I
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 501 SG-----GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT------ 549
                      +         ++L  NE+             +  + LSNN +T      
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 550 -GEIPKSISNLTELAYLDLSNNKLTGDVPQEL--GRFDKLLSLNLSHNDLSGEIPSNLGN 606
                 +  N   L  +DL  NKLT  +  +        L ++++S+N  S   P+   N
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLN 774

Query: 607 L-----FVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRS 661
                 F +++  D   N +    P  +    SL  L +  N +   +   L+    L  
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP--QLYI 831

Query: 662 VDFSDNELTEL 672
           +D +DN    +
Sbjct: 832 LDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  250 bits (640), Expect = 1e-71
 Identities = 93/642 (14%), Positives = 185/642 (28%), Gaps = 116/642 (18%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           + +   +  LS+      G +P  +  L +++ L  G +              +      
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 61  YLNELTLEFPS-FILTCRNLTYLDLSLNKLSGL-----IPERLFTNLGKLEYLNLTENQF 114
             + + + +   F+   + L   DL  + ++       I +    +L   +  NLT N+ 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRI 437

Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLK 174
              +S  + +L+ L  +  A + F+           + +               S   LK
Sbjct: 438 TF-ISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLK 491

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG---------GLPLSLSNLSKLN 225
           +L  ++L        +P  L     L  L +A N+             L        K+ 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 226 DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG 285
              +  N L    ++  +    +L  L   +N          G   KL  L L  N    
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 286 PIPSEI-EKLTSLENLDLSGNQLSGTIPPT--LWNLTNLLSLQLFSNNLSGTIPPEIGSM 342
            IP +       +E L  S N+L   IP      ++  + S+    N +       I   
Sbjct: 610 -IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISC- 665

Query: 343 ASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 402
                              +  + +  +  ++  N         F      +  +  SNN
Sbjct: 666 -----------------SMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNN 707

Query: 403 SFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGV 462
             +  +P                           +N   L  +    N+ T         
Sbjct: 708 LMT-SIPENSLKP----------------KDGNYKNTYLLTTIDLRFNKLT--------- 741

Query: 463 HPRLDFIRLSGNQFVGEISPDWGECR--NLSNLQLDRNRISGGIPAELGNLTRLGVLSLD 520
                            +S D+       LSN+ +  N  S   P +  N ++L    + 
Sbjct: 742 ----------------SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGI- 783

Query: 521 SNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
                                +   N +  + P  I+    L  L + +N +   V ++L
Sbjct: 784 -----------------RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

Query: 581 GRFDKLLSLNLSHNDL-SGEIPSNLGNLFVLQYMLDLSSNSL 621
               +L  L+++ N   S ++ S    +    Y+L       
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.3 bits (224), Expect = 1e-18
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 10/189 (5%)

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE 551
           N   + +        +L N  R+  LSL      G++P  +G+L +L  L+   +  T  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 552 IPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS-LNLSHNDLSGE------IPSNL 604
                         +   +++     +    +D+ L+  +L  + ++           + 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 605 GNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDF 664
            +L   Q  +   +N ++  I + + +LT L+I+  + +  +    A      +      
Sbjct: 423 ISLKDTQ--IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 665 SDNELTELA 673
            +NE    +
Sbjct: 480 YENEELSWS 488

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  240 bits (616), Expect = 2e-73
 Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 8/276 (2%)

Query: 396 NVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGS--LPACLRNCSNLNRVRF-DGNQF 452
                N ++ G L       + +  L ++G N      +P+ L N   LN +     N  
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
            G I  A     +L ++ ++     G I     + + L  L    N +SG +P  + +L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFN-LNLSNNHLTGEIPKSISNLTELAYLDLSNNK 571
            L  ++ D N ++G IP   G   KLF  + +S N LTG+IP + +NL  LA++DLS N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 572 LTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK 631
           L GD     G       ++L+ N L+ ++   +G    L   LDL +N + GT+PQ L +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG-LDLRNNRIYGTLPQGLTQ 266

Query: 632 LTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
           L  L  LN+S N L G IP    ++       +++N
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  240 bits (615), Expect = 3e-73
 Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 9/276 (3%)

Query: 82  LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG--KLSPNVSKLSNLIDLRLA-TNKF 138
            D       G++ +   T   ++  L+L+         +  +++ L  L  L +   N  
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCT 198
            GPIP  I  ++ L  + + + + +G IP  L Q+K L  LD   NAL+ T+PP +    
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 199 NLSYLALAVNQLSGGLPLSLSNLSKL-NDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
           NL  +    N++SG +P S  + SKL   + +S N L+G+I      N   L  + +  N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207

Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317
              G+     G     Q + L +N+ +  +   +    +L  LDL  N++ GT+P  L  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 318 LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353
           L  L SL +  NNL G I P+ G++          N
Sbjct: 267 LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (569), Expect = 1e-66
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 34/296 (11%)

Query: 47  SKFSSMPSLTHLGLYLNEL--TLEFPSFILTCRNLTYLDLS-LNKLSGLIPERLFTNLGK 103
              +    + +L L    L      PS +     L +L +  +N L G IP         
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP--------- 94

Query: 104 LEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163
                           P ++KL+ L  L +     SG IP  +  +  L  ++   N+ +
Sbjct: 95  ----------------PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS-YLALAVNQLSGGLPLSLSNLS 222
           G +P S+  L NL  +    N ++  IP   G  + L   + ++ N+L+G +P + +NL+
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 223 KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNN 282
            L  + LS N L G+ S  L G+    + + +  NS   ++  ++GL   L  L L  N 
Sbjct: 199 -LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNR 255

Query: 283 FSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNN-LSGTIPP 337
             G +P  + +L  L +L++S N L G I P   NL         +N  L G+  P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (567), Expect = 2e-66
 Identities = 75/325 (23%), Positives = 122/325 (37%), Gaps = 54/325 (16%)

Query: 280 RNNFSGPIPSEIEKLTSLENLDLSGNQLSGT--IPPTLWNLTNLLSLQLFS-NNLSGTIP 336
              + G +     +   + NLDLSG  L     IP +L NL  L  L +   NNL G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLIN 396
           P I  +  L    +    + G +P+ +S++  L       N  SG++P            
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP----- 149

Query: 397 VSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNI 456
                                L  +T +GN  +G++P    + S L              
Sbjct: 150 --------------------NLVGITFDGNRISGAIPDSYGSFSKLFT------------ 177

Query: 457 TKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGV 516
                       + +S N+  G+I P +    NL+ + L RN + G      G+      
Sbjct: 178 -----------SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 517 LSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDV 576
           + L  N L   +   +G    L  L+L NN + G +P+ ++ L  L  L++S N L G++
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 577 PQELGRFDKLLSLNLSHNDLSGEIP 601
           PQ  G   +      ++N      P
Sbjct: 285 PQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  215 bits (549), Expect = 9e-64
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 11/248 (4%)

Query: 431 SLPACLRNCSNL----NRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE--ISPDW 484
            +   L N + L             + G +        R++ + LSG        I    
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 485 GECRNLSNLQL-DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNL 543
                L+ L +   N + G IP  +  LT+L  L +    ++G IP  L ++  L  L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 544 SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL-SLNLSHNDLSGEIPS 602
           S N L+G +P SIS+L  L  +    N+++G +P   G F KL  S+ +S N L+G+IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 603 NLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSV 662
              NL  L + +DLS N L G      G   + + ++L++N L+  +   +    +L  +
Sbjct: 193 TFANL-NLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249

Query: 663 DFSDNELT 670
           D  +N + 
Sbjct: 250 DLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  210 bits (536), Expect = 6e-62
 Identities = 77/288 (26%), Positives = 127/288 (44%), Gaps = 8/288 (2%)

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG--PIPSEIEKLTSLENLDL 302
           +W    +    N +++G +        ++  L L   N     PIPS +  L  L  L +
Sbjct: 26  SWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 303 SG-NQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
            G N L G IPP +  LT L  L +   N+SG IP  +  + +LV  D + N L G LP 
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 362 NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL 421
           +IS L  L   +   N  SG+IP  +G FS    +++ S N  +G++P    +   L  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFV 202

Query: 422 TVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEIS 481
            ++ N   G       +  N  ++    N    ++ K  G+   L+ + L  N+  G + 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261

Query: 482 PDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP 529
               + + L +L +  N + G IP + GNL R  V +  +N+     P
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  209 bits (534), Expect = 9e-62
 Identities = 78/271 (28%), Positives = 123/271 (45%), Gaps = 9/271 (3%)

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGE--ISANLIGNWTELESLQIQN-NSFMGNIP 264
               G L  + +   ++N+L LS   L     I ++ + N   L  L I   N+ +G IP
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIP 94

Query: 265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSL 324
           P I  LT+L YL++   N SG IP  + ++ +L  LD S N LSGT+PP++ +L NL+ +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 325 QLFSNNLSGTIPPEIGSMASLVAF-DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSI 383
               N +SG IP   GS + L     ++ N+L G++P   + L  L    +  N   G  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213

Query: 384 PGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLN 443
              FG    +   +  + NS + +L  ++     L  L +  N   G+LP  L     L+
Sbjct: 214 SVLFGSDK-NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGN 474
            +    N   G I +  G   R D    + N
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  174 bits (444), Expect = 5e-49
 Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 8/234 (3%)

Query: 2   GDLSELQYLSVYD-NNLNGAIPFQLSSLRKVRYLDLGGNFL--ETPDWSKFSSMPSLTHL 58
            +L  L +L +   NNL G IP  ++ L ++ YL +    +    PD+   S + +L  L
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTLVTL 130

Query: 59  GLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKL 118
               N L+   P  I +  NL  +    N++SG IP+   +       + ++ N+  GK+
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 119 SPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
            P  + L NL  + L+ N   G      GS  N Q + L  NS    +   +G  KNL  
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 179 LDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
           LDLR N +  T+P  L     L  L ++ N L G +P    NL + +    ++N
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  154 bits (391), Expect = 8e-42
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 5/217 (2%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             L++L YL +   N++GAIP  LS ++ +  LD   N L        SS+P+L  +   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 62  LNELTLEFPSFILTCRNL-TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
            N ++   P    +   L T + +S N+L+G IP     NL  L +++L+ N  +G  S 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASV 215

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
                 N   + LA N  +  +   +G   NL  ++L NN   G +P  L QLK L  L+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLS 217
           +  N L   IP + G        A A N+   G PL 
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 27/112 (24%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
            G     Q + +  N+L   +                          K     +L  L L
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG-------------------------KVGLSKNLNGLDL 251

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
             N +    P  +   + L  L++S N L G IP+    NL + +      N
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  246 bits (631), Expect = 3e-72
 Identities = 127/601 (21%), Positives = 206/601 (34%), Gaps = 25/601 (4%)

Query: 82  LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
            +     L+  IP  L  +    E L  + N      +   S+L NL  L L   +    
Sbjct: 17  YNCENLGLNE-IPGTLPNST---ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
                 S   L  + L  N       ++L   K L+HL      ++      L     L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ-NNSFM 260
            L L  N +S           KL  L   +N +   +S   + +  +  +L +  N + +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 261 GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE--KLTSLENLDLSGNQLSGTIPPTLWNL 318
             I P        Q L          I   ++   + SL              P     L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 319 --TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFT 376
              ++ S+ L  +             + L   D+    L  ELP  +  L  L K  +  
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFTGS--LP 433
           N F          F PSL ++S   N+   EL          L EL ++ ++   S    
Sbjct: 311 NKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 434 ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSN 492
             LRN S+L  +    N+     T+AF   P+L+ + L+  +   + +   +     L  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKI---PTDLGKLVKLFNLNLSNNHLT 549
           L L  + +          L  L  L+L  N            L  L +L  L LS   L+
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFV 609
                + ++L  + ++DLS+N+LT    + L    K + LNL+ N +S  +PS L  L  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL-KGIYLNLASNHISIILPSLLPILSQ 548

Query: 610 LQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
            +  ++L  N L  T          LE    +  +L         +   LR V  SD  L
Sbjct: 549 QRT-INLRQNPLDCTC--SNIYF--LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

Query: 670 T 670
           +
Sbjct: 604 S 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  245 bits (628), Expect = 7e-72
 Identities = 105/578 (18%), Positives = 191/578 (33%), Gaps = 40/578 (6%)

Query: 8   QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
           +  +  +  LN  IP  L +      L+   N L T   + FS + +LT L L   ++  
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 68  EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
                  +   L  L L+ N L  +      +    L++L   +          +     
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
           L  L L +N  S            L++++  NN+        +  L+   +L L +N  +
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 188 -YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSN--LSKLNDLGLSDNFLSGEISANLIG 244
              I P          L     Q    +   L N  +  L      D     +IS  +  
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFE 249

Query: 245 NWTE--LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
              E  +ES+ +Q + F           + LQ L L   + S  +PS +  L++L+ L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVL 308

Query: 303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPE-IGSMASLVAFDVNTNQLHGELPE 361
           S N+       +  N  +L  L +  N     +    + ++ +L   D++ + +      
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE----- 363

Query: 362 NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL 421
                             S             L +++ S N               LE L
Sbjct: 364 -----------------TSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 422 TVNGNNFTGSLP-ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI 480
            +           +  +N   L  +    +    +  + F   P L  + L GN F    
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 481 SPDWGECRNLSNLQ---LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
                  + L  L+   L    +S        +L  +  + L  N LT      L  L  
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGD 575
           ++ LNL++NH++  +P  +  L++   ++L  N L   
Sbjct: 526 IY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  237 bits (607), Expect = 7e-69
 Identities = 104/528 (19%), Positives = 172/528 (32%), Gaps = 39/528 (7%)

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
               N     +IP +L    + + L+   N L            NL++L L   Q+    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 274
             +  +  +L+ L L+ N L   ++   +     L+ L              +     L+
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 275 YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL-FSNNLSG 333
            L+L  N+ S     +      L+ LD   N +       + +L    +L L  + N   
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 334 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPS 393
            I P     A   + +    Q    + + +                             S
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST-----------------------IQS 229

Query: 394 LINVSFSNNSFSGELPH--ELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
           L   +F +       P   E     ++E + +  + F           S L  +      
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAE-LGN 510
            +  +         L  + LS N+F            +L++L +  N     +    L N
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 511 LTRLGVLSLDSNELTGKIPTD--LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
           L  L  L L  +++      +  L  L  L +LNLS N       ++     +L  LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 569 NNKLTGDVPQE-LGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQ 627
             +L     Q        L  LNLSH+ L          L  LQ+ L+L  N       Q
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH-LNLQGNHFPKGNIQ 467

Query: 628 E---LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           +   L  L  LEIL LS   LS     + +S+  +  VD S N LT  
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (533), Expect = 2e-58
 Identities = 92/536 (17%), Positives = 170/536 (31%), Gaps = 21/536 (3%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
                L  L +  N L       LS  + +++L      + + D+    +  +L  L L 
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE--YLNLTENQFQGKLS 119
            N ++            L  LD   N +  L  E   ++L +     LNL  N   G + 
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAG-IE 195

Query: 120 PNVSKLSNLIDLRLATNKFSGPIPGDIG--SMSNLQLVELFNNSFTGQIPSSLGQLK--N 175
           P     +    L     +    I   +   ++ +L L    +       P+    L   +
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 176 LQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235
           ++ ++L+ +             + L  L L    LS  LP  L  LS L  L LS N   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 236 GEISANLIGNWTELESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNN--FSGPIPSEIE 292
             +      N+  L  L I+ N+    +    +  L  L+ L L  ++   S     ++ 
Sbjct: 315 N-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 293 KLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVN 351
            L+ L++L+LS N+              L  L L    L          ++  L   +++
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 352 TNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGELP 409
            + L     +    L  L   ++  N+F                L  +  S    S    
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 410 HELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFI 469
           H   S   +  + ++ N  T S    L +   +  +    N  +  +     +  +   I
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552

Query: 470 RLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
            L  N      S  +     L   + +  ++         N   L  + L    L+
Sbjct: 553 NLRQNPLDCTCSNIY----FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (330), Expect = 6e-32
 Identities = 62/315 (19%), Positives = 117/315 (37%), Gaps = 14/315 (4%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETP-DWSKFSSMPSLTHLG 59
           +  LS L+ L +  N          S+   + +L + GN            ++ +L  L 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 60  LYLNELTL--EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117
           L  +++         +    +L  L+LS N+   L  E  F    +LE L+L   + + K
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVK 415

Query: 118 LSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG---QIPSSLGQL 173
            + +    L  L  L L+ +            +  LQ + L  N F     Q  +SL  L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 174 KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF 233
             L+ L L    L+            ++++ L+ N+L+     +LS+L  +  L L+ N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNH 534

Query: 234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK 293
           +S  I  +L+   ++  ++ ++ N            +  L++             +  E 
Sbjct: 535 ISI-ILPSLLPILSQQRTINLRQNPLDCT----CSNIYFLEWYKENMQKLEDTEDTLCEN 589

Query: 294 LTSLENLDLSGNQLS 308
              L  + LS   LS
Sbjct: 590 PPLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  236 bits (604), Expect = 2e-68
 Identities = 107/553 (19%), Positives = 180/553 (32%), Gaps = 34/553 (6%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
           S+  ++ L+ N           + S LQ ++L           +   L +L +L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGN 245
           +    P      T+L  L     +L+      +  L  L  L ++ NF+          N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 246 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLY---RNNFSGPIPSEIEKLTSLENLDL 302
            T L  + +  N        ++  L +   + L      N    I  +  +   L  L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 303 SGNQLSGTIPPT-LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
            GN  S  I  T L NL  L   +L                 +L  F+ +  +   ++  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD--------ERNLEIFEPSIMEGLCDVTI 263

Query: 362 NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL 421
           +  RL   N FS     F             ++  +S +  S       ++   F  + L
Sbjct: 264 DEFRLTYTNDFSDDIVKFHC---------LANVSAMSLAGVSIKY--LEDVPKHFKWQSL 312

Query: 422 TVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ--FVGE 479
           ++         P    +   L  +    N+ +  I+      P L ++ LS N   F G 
Sbjct: 313 SIIRCQLK-QFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGC 367

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKL 538
            S       +L +L L  N     + A    L  L  L    + L           L KL
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 539 FNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE-LGRFDKLLSLNLSHNDLS 597
             L++S  +   +       LT L  L ++ N    +           L  L+LS   L 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMI 657
                    L  LQ  L++S N+L         +L SL  L+ S N++            
Sbjct: 487 QISWGVFDTLHRLQL-LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 658 SLRSVDFSDNELT 670
           SL   + ++N + 
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  229 bits (585), Expect = 8e-66
 Identities = 109/540 (20%), Positives = 183/540 (33%), Gaps = 38/540 (7%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
           +P DI S  + + ++L  N        S      LQ LDL    +            +LS
Sbjct: 26  VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
            L L  N +    P S S L+ L +L   +  L+  + +  IG    L+ L + +N    
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHS 142

Query: 262 -NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLT----SLENLDLSGNQLSGTIPPTLW 316
             +P     LT L ++ L  N       ++++ L        +LD+S N +   I    +
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFT 376
               L  L L  N  S  I               N   LH      +          +F 
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQ---------NLAGLH-VHRLILGEFKDERNLEIFE 251

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL 436
            +    +         ++     +  +   +   +      +  +++ G +        +
Sbjct: 252 PSIMEGLC------DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDV 303

Query: 437 RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLD 496
                   +     Q     T      P L  + L+ N+  G IS       +LS L L 
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKKVALPSLSYLDLS 358

Query: 497 RNRISGGIPAELGNL--TRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPK 554
           RN +S        +L    L  L L  N     +  +   L +L +L+  ++ L      
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 555 S-ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQY 612
           S   +L +L YLD+S      D          L +L ++ N       SN   N   L +
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 613 MLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
            LDLS   L          L  L++LN+S N L     +  + + SL ++D S N +   
Sbjct: 478 -LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (564), Expect = 7e-63
 Identities = 115/591 (19%), Positives = 197/591 (33%), Gaps = 59/591 (9%)

Query: 14  DNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFI 73
           D  L+  +P  + S    + +DL  N L+      FS+   L  L L   E+        
Sbjct: 20  DQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 74  LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL 133
               +L+ L L+ N +    P   F+ L  LE L   E +     S  + +L  L  L +
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 134 ATNKFSG-PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPP 192
           A N      +P    +++NL  V+L  N       + L  L+    +             
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV------------- 182

Query: 193 ELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESL 252
                     L +++N +   +        KL++L L  NF S  I    + N   L   
Sbjct: 183 -------NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 253 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSL--ENLDLSGNQLSGT 310
           ++    F                      N     PS +E L  +  +   L+       
Sbjct: 235 RLILGEFKDE------------------RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 311 IPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLN 370
                  L N+ ++ L   ++      ++       +  +   QL      ++  L  L 
Sbjct: 277 DIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 371 KFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN--SFSGELPHELCSGFALEELTVNGNNF 428
                T N  GSI        PSL  +  S N  SFSG   +      +L  L ++ N  
Sbjct: 335 ----LTMN-KGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 429 TGSLPACLRNCSNLNRVRFDGNQFTGNI-TKAFGVHPRLDFIRLSGNQFVGEISPDWGEC 487
              + A       L  + F  +         AF    +L ++ +S      +    +   
Sbjct: 389 I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 488 RNLSNLQLDRNRISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
            +L+ L++  N       +    N T L  L L   +L          L +L  LN+S+N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 547 HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           +L        + L  L+ LD S N++             L   NL++N ++
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  212 bits (541), Expect = 1e-59
 Identities = 100/584 (17%), Positives = 177/584 (30%), Gaps = 72/584 (12%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           S  + + +  N L     +  S+  ++++LDL    +ET +   +  +  L++L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG-KLSPNVS 123
           +    P       +L  L     KL+ L        L  L+ LN+  N     KL    S
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE----LFNNSFTGQIPSSLGQLKNLQHL 179
            L+NL+ + L+ N        D+  +     V     +  N     I     Q   L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 180 DLRMNALNYTIPPELGL-CTNLSYLALAVNQLSGGLPLS------LSNLSKLNDLGLSDN 232
            LR N  +  I          L    L + +      L       +  L  +        
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 233 FLSG-EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI 291
           + +              + ++ +   S       ++    K Q L + R       P+  
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ-FPT-- 324

Query: 292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVN 351
             L  L++L L+ N+ S  I      L +L  L L  N LS        S          
Sbjct: 325 LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS-FSGCCSYSDLGT------ 375

Query: 352 TNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE 411
                                                    SL ++  S N     +   
Sbjct: 376 ----------------------------------------NSLRHLDLSFNGAI-IMSAN 394

Query: 412 LCSGFALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIR 470
                 L+ L    +            +   L  +         +    F     L+ ++
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 471 LSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP 529
           ++GN F      + +    NL+ L L + ++          L RL +L++  N L     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 530 TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
           +   +L  L  L+ S N +             LA+ +L+NN + 
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (490), Expect = 1e-52
 Identities = 104/540 (19%), Positives = 175/540 (32%), Gaps = 50/540 (9%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            + SELQ+L +    +          L  +  L L GN +++     FS + SL +L   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG----K 117
             +L       I     L  L+++ N +        F+NL  L +++L+ N  Q      
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ-LKNL 176
           L          + L ++ N     I         L  + L  N  +  I  +  Q L  L
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 177 QHLDLRMNALN-----YTIPPEL--GLC-TNLSYLALAVNQLSGGLPLSLSNLSKLNDLG 228
               L +             P +  GLC   +    L          +    L+ ++ + 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 229 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288
           L+   +        +    + +SL I         P     L  L+ L L  N  S  I 
Sbjct: 292 LAGVSIK---YLEDVPKHFKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMNKGS--IS 343

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNL--TNLLSLQLFSNNLSGTIPPEIGSMASLV 346
            +   L SL  LDLS N LS +   +  +L   +L  L L  N     +      +  L 
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
             D   + L             + +FS F +                L+ +  S  +   
Sbjct: 403 HLDFQHSTLKR-----------VTEFSAFLS-------------LEKLLYLDISYTNTKI 438

Query: 407 ELPHELCSGFALEELTVNGNNFTGSLPAC-LRNCSNLNRVRFDGNQFTGNITKAFGVHPR 465
           +         +L  L + GN+F  +  +    N +NL  +     Q        F    R
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
           L  + +S N  +   S  + +  +LS L    NRI             L   +L +N + 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (398), Expect = 1e-40
 Identities = 87/421 (20%), Positives = 141/421 (33%), Gaps = 27/421 (6%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVR----YLDLGGNFLETPDWSKFSSMPSLT 56
             +L+ L ++ +  N +       L  LR+       LD+  N ++      F  +  L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207

Query: 57  HLGLYLNELTLE-FPSFILTCRNLTYLDLSLNKLSGL-----IPERLFTNLGKL--EYLN 108
            L L  N  +     + +     L    L L +             +   L  +  +   
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 109 LTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS 168
           LT              L+N+  + LA          D+      Q + +       Q P+
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPT 324

Query: 169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS--GGLPLSLSNLSKLND 226
               L  L+ L L MN    +I  +     +LSYL L+ N LS  G    S    + L  
Sbjct: 325 L--DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNNFSG 285
           L LS N      +        EL+ L  Q+++            L KL YL +   N   
Sbjct: 381 LDLSFNGAIIMSAN--FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 286 PIPSEIEKLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEIGSMAS 344
                   LTSL  L ++GN         ++ N TNL  L L    L         ++  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 345 LVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 404
           L   +++ N L      + ++L  L+      N    +  G    F  SL   + +NNS 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557

Query: 405 S 405
           +
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 587 LSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
           ++       LS ++P ++ +    +  +DLS N L           + L+ L+LSR ++ 
Sbjct: 14  ITYQCMDQKLS-KVPDDIPSS--TKN-IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 647 GRIPASLSSMISLRSVDFSDNELTELA 673
                +   +  L ++  + N +   +
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFS 96

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  180 bits (460), Expect = 9e-50
 Identities = 106/528 (20%), Positives = 187/528 (35%), Gaps = 64/528 (12%)

Query: 102 GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS 161
           G L    +T++    ++  + + L+  +   L     +  +      +  +  ++     
Sbjct: 1   GPLGSATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG 57

Query: 162 FTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNL 221
                   +  L NL  ++   N L  T    L   T L  + +  NQ++      L+NL
Sbjct: 58  IK--SIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIAD--ITPLANL 111

Query: 222 SKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 281
           + L  L L +N ++       + N T L  L++ +N+        +  LT LQ L    N
Sbjct: 112 TNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-N 165

Query: 282 NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS 341
             +   P  +  LT+LE LD+S N++S      L  LTNL SL   +N +S   P  +G 
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGI 219

Query: 342 MASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN 401
           + +L    +N NQL       ++ L  L    +  N  S   P               S 
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--------------LSG 263

Query: 402 NSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFG 461
            +              L EL +  N  +   P  L   + L  +  + NQ          
Sbjct: 264 LT-------------KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPIS 306

Query: 462 VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDS 521
               L ++ L  N               L  L    N++S    + L NLT +  LS   
Sbjct: 307 NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 522 NELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELG 581
           N+++   P  L  L ++  L L++   T       +N++    +      L    P  + 
Sbjct: 363 NQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATIS 418

Query: 582 RFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL 629
                   +++ N  S    + +   F     +   + + SGT+ Q L
Sbjct: 419 DGGSYTEPDITWNLPS--YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  172 bits (437), Expect = 1e-46
 Identities = 102/440 (23%), Positives = 173/440 (39%), Gaps = 37/440 (8%)

Query: 7   LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT 66
           L   ++  +     I F  ++L +     LG   +        + +  +T L      + 
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIK 59

Query: 67  LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
                 +    NLT ++ S N+L+ + P     NL KL  + +  NQ        ++ L+
Sbjct: 60  S--IDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANLT 112

Query: 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
           NL  L L  N+ +   P  + +++NL  +EL +N+ +    S+L  L +LQ L       
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT 168

Query: 187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW 246
           +      L   T L  L ++ N++S      L+ L+ L  L  ++N +S       +G  
Sbjct: 169 D---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---LGIL 220

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
           T L+ L +  N         +  LT L  L L  N  S   P  +  LT L  L L  NQ
Sbjct: 221 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 307 LSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 366
           +S   P  L  LT L +L+L  N L    P  I ++ +L    +  N +       +S L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSL 330

Query: 367 VKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGN 426
            KL +   + N  S            ++  +S  +N  S   P    +   + +L +N  
Sbjct: 331 TKLQRLFFYNNKVSDVSS--LANL-TNINWLSAGHNQISDLTPLANLT--RITQLGLNDQ 385

Query: 427 NFTGSLPACLRNCSNLNRVR 446
            +T +      N S  N V+
Sbjct: 386 AWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  170 bits (434), Expect = 3e-46
 Identities = 94/456 (20%), Positives = 180/456 (39%), Gaps = 37/456 (8%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            DL ++  L      +      +   L  +  ++   N L     +   ++  L  + + 
Sbjct: 43  TDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMN 98

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N++     + +    NLT L L  N+++ + P     NL  L  L L+ N         
Sbjct: 99  NNQIAD--ITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISA 151

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           +S L++L  L    N+ +   P  + +++ L+ +++ +N  +    S L +L NL+ L  
Sbjct: 152 LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N +  +    LG+ TNL  L+L  NQL      +L++L+ L DL L++N +S      
Sbjct: 207 TNNQI--SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP-- 260

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
            +   T+L  L++  N      P  +  LT L  L L  N      P  I  L +L  L 
Sbjct: 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
           L  N +S   P  + +LT L  L  ++N +S      + ++ ++       NQ+      
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LT 369

Query: 362 NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL 421
            ++ L ++ +  +    ++ +        S   I  +  N + +   P  +  G +  E 
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVS---IPNTVKNVTGALIAPATISDGGSYTEP 426

Query: 422 TVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT 457
            +  N  +          S    +      F+G +T
Sbjct: 427 DITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  166 bits (422), Expect = 1e-44
 Identities = 108/455 (23%), Positives = 184/455 (40%), Gaps = 60/455 (13%)

Query: 217 SLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYL 276
           + + L++     L    ++  +S     +  ++ +LQ             +  L  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 277 FLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP 336
               N  +   P  ++ LT L ++ ++ NQ++   P  L NLTNL  L LF+N ++   P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLIN 396
             + ++ +L   ++++N +       +S L  L + S F N  +   P            
Sbjct: 130 --LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-FGNQVTDLKP------------ 172

Query: 397 VSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNI 456
              +N +              LE L ++ N  +    + L   +NL  +    NQ +   
Sbjct: 173 --LANLT-------------TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 215

Query: 457 TKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGV 516
               G+   LD + L+GNQ + +I        NL++L L  N+IS   P  L  LT+L  
Sbjct: 216 --PLGILTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 517 LSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDV 576
           L L +N+++   P  L  L  L NL L+ N L    P  ISNL  L YL L  N ++   
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325

Query: 577 PQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLE 636
           P  +    KL  L   +N +S    S+L NL  + + L    N +S   P  L  LT + 
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINW-LSAGHNQISDLTP--LANLTRIT 378

Query: 637 ILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTE 671
            L L+    +       +++    +V      L  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (394), Expect = 8e-41
 Identities = 98/424 (23%), Positives = 171/424 (40%), Gaps = 58/424 (13%)

Query: 249 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308
           L S  I  ++ +  I      L +     L + N +  +      L  +  L      + 
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI- 58

Query: 309 GTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVK 368
                 +  L NL  +   +N L+   P  + ++  LV   +N NQ+       ++ L  
Sbjct: 59  -KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTN 113

Query: 369 LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNF 428
           L   ++F N  +   P      + +L  +  S+N+ S      L    +L++L+   N  
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLT-NLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQV 167

Query: 429 TGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECR 488
           T   P  L N + L R+    N+ +            +  +                +  
Sbjct: 168 TDLKP--LANLTTLERLDISSNKVSD-----------ISVL---------------AKLT 199

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
           NL +L    N+IS   P  LG LT L  LSL+ N+L       L  L  L +L+L+NN +
Sbjct: 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 255

Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLF 608
           +   P  +S LT+L  L L  N+++      L     L +L L+ N L     S + NL 
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLK 309

Query: 609 VLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668
            L Y L L  N++S   P  +  LT L+ L    N++S    +SL+++ ++  +    N+
Sbjct: 310 NLTY-LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 669 LTEL 672
           +++L
Sbjct: 365 ISDL 368

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  183 bits (466), Expect = 1e-49
 Identities = 103/528 (19%), Positives = 175/528 (33%), Gaps = 31/528 (5%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
            +  +L L+ N           S   LQ+++L           +   L +L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGN 245
           +           ++L  L      L+      + +L  L +L ++ N +          N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 246 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLY---RNNFSGPIPSEIEKLTSLENLDL 302
            T LE L + +N        ++ +L ++  L L      N    I     K   L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 362
             N  S  +  T   +  L  L++    L      E  +  +L  FD +  +    L   
Sbjct: 208 RNNFDSLNVMKTC--IQGLAGLEVHRLVLG-----EFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELT 422
             RL  L+        +   I   F     ++ + S  + +           G   + L 
Sbjct: 261 EFRLAYLD-------YYLDDIIDLFNCL-TNVSSFSLVSVTIERVKDFSYNFG--WQHLE 310

Query: 423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ--FVGEI 480
           +    F       L++   L    F  N+       +    P L+F+ LS N   F G  
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 481 SPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLF 539
           S       +L  L L  N +   + +    L +L  L    + L           L  L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE-LGRFDKLLSLNLSHNDLSG 598
            L++S+ H         + L+ L  L ++ N    +   +       L  L+LS   L  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 599 EIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
             P+   +L  LQ  L+++SN L         +LTSL+ + L  N   
Sbjct: 485 LSPTAFNSLSSLQV-LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  181 bits (461), Expect = 4e-49
 Identities = 105/529 (19%), Positives = 189/529 (35%), Gaps = 42/529 (7%)

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
            +    +F  +IP +L    + ++LDL  N L +           L  L L+  ++    
Sbjct: 12  YQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 274
             +  +LS L+ L L+ N +   ++       + L+ L     +        IG L  L+
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 275 YLFLYRNNF-SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL----LSLQLFSN 329
            L +  N   S  +P     LT+LE+LDLS N++       L  L  +    LSL L  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN-ISRLVKLNKFSVFTNNFSGSIPGDFG 388
            ++  I P       L    +  N     + +  I  L  L    +    F         
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-------- 238

Query: 389 KFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFD 448
               +  N+   + S    L +     F L  L    ++            +N++     
Sbjct: 239 ----NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF----NCLTNVSSFSLV 290

Query: 449 GNQFTGNITKAFGVH-PRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAE 507
                     ++      L+ +     QF         + ++L  L    N+      +E
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGN-AFSE 343

Query: 508 LGNLTRLGVLSLDSNELT--GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYL 565
           + +L  L  L L  N L+  G           L  L+LS N +   +  +   L +L +L
Sbjct: 344 V-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401

Query: 566 DLSNNKLTG-DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGT 624
           D  ++ L              L+ L++SH             L  L+  L ++ NS    
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAGNSFQEN 460

Query: 625 IPQE-LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
              +   +L +L  L+LS+ QL    P + +S+ SL+ ++ + N+L  +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  170 bits (433), Expect = 2e-45
 Identities = 101/544 (18%), Positives = 182/544 (33%), Gaps = 53/544 (9%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
            +   LDLS N L   +    F +  +L+ L+L+  + Q  +       LS+L  L L  
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPEL 194
           N       G    +S+LQ +     +        +G LK L+ L++  N +    +P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQI 254
              TNL +L L+ N++       L  L ++  L                       SL +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL---------------------NLSLDL 184

Query: 255 QNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDL------SGNQL 307
             N  M  I P      +L  L L  N  S  +    I+ L  LE   L      +   L
Sbjct: 185 SLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 308 SGTIPPTLWNLTNL--LSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENIS 364
                  L  L NL     +L   +       ++   + ++ +F + +  +     ++ S
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFS 301

Query: 365 RLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVN 424
                    +    F             SL  ++F++N              +LE L ++
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLS 355

Query: 425 GNNFT--GSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP 482
            N  +  G         ++L  +    N     ++  F    +L+ +    +    +   
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMS 412

Query: 483 DWGECRNLSNLQ---LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKL 538
           ++    +L NL    +               L+ L VL +  N        D   +L  L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 539 FNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG 598
             L+LS   L    P + ++L+ L  L++++N+L         R   L  + L  N    
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532

Query: 599 EIPS 602
             P 
Sbjct: 533 SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (403), Expect = 2e-41
 Identities = 101/515 (19%), Positives = 172/515 (33%), Gaps = 29/515 (5%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
              + L +  N L     +   S  +++ LDL    ++T +   + S+  L+ L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ-GKLSPNVS 123
           +            +L  L      L+ L       +L  L+ LN+  N  Q  KL    S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE----LFNNSFTGQIPSSLGQLKNLQHL 179
            L+NL  L L++NK       D+  +  + L+     L  N     I     +   L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205

Query: 180 DLRMNALNYTIPPE-LGLCTNLSYLALAVNQLSGGLPLS------LSNLSKLN--DLGLS 230
            LR N  +  +    +     L    L + +      L       L  L  L   +  L+
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 231 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE 290
                 +   +L    T + S  + + +       +       Q+L L    F    P+ 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQ-FPT- 321

Query: 291 IEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS--GTIPPEIGSMASLVAF 348
             KL SL+ L  + N+       +  +L +L  L L  N LS  G          SL   
Sbjct: 322 -LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 408
           D++ N +   +  N   L +L       +N              +LI +  S+       
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VA 436

Query: 409 PHELCSGF-ALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRL 466
            + + +G  +LE L + GN+F  +          NL  +     Q       AF     L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 467 DFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
             + ++ NQ        +    +L  + L  N   
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  155 bits (394), Expect = 3e-40
 Identities = 96/493 (19%), Positives = 162/493 (32%), Gaps = 29/493 (5%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
               ELQ L +    +         SL  +  L L GN +++     FS + SL  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
              L       I   + L  L+++ N +        F+NL  LE+L+L+ N+ Q     +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 122 VSKLSNL----IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS-SLGQLKNL 176
           +  L  +    + L L+ N  +  I         L  + L NN  +  +    +  L  L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 177 QHLDLRMNAL---NYTIPPELGLCTNLSYLALAVNQLSG------GLPLSLSNLSKLNDL 227
           +   L +            +      L  L +   +L+        +    + L+ ++  
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 228 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPI 287
            L    +      +    W  LE +  +   F          L  L+ L    N      
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK------LKSLKRLTFTSNKGGNAF 341

Query: 288 PSEIEKLTSLENLDLSGNQLS--GTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL 345
                 L SLE LDLS N LS  G    + +  T+L  L L  N +  T+      +  L
Sbjct: 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 346 VAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 404
              D   + L      ++   L  L    +   +   +  G F     SL  +  + NSF
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSF 457

Query: 405 SGELPHELCSGF-ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH 463
                 ++ +    L  L ++        P    + S+L  +    NQ        F   
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 464 PRLDFIRLSGNQF 476
             L  I L  N +
Sbjct: 518 TSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 3e-31
 Identities = 73/344 (21%), Positives = 121/344 (35%), Gaps = 24/344 (6%)

Query: 7   LQYLSVYDNNLNGAIP-FQLSSLRKVRYLDL------GGNFLETPDWSKFSSMPSLTHLG 59
           L  L++ +N  +  +    +  L  +    L          LE  D S    + +LT   
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 60  LYLNELTLEFPSFILT---CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG 116
             L  L       I       N++   L    +  +           LE +N    QF  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 117 KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT--GQIPSSLGQLK 174
                  KL +L  L   +NK           + +L+ ++L  N  +  G    S     
Sbjct: 322 ------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLS-LSNLSKLNDLGLSDNF 233
           +L++LDL  N +  T+         L +L    + L      S   +L  L  L +S   
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIE 292
                   +    + LE L++  NSF  N  P+I   L  L +L L +       P+   
Sbjct: 433 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 293 KLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP 336
            L+SL+ L+++ NQL          LT+L  + L +N    + P
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 1e-30
 Identities = 95/403 (23%), Positives = 150/403 (37%), Gaps = 31/403 (7%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRY----LDLGGNFLETPDWSKFSSMPSLT 56
             +L+ L++L +  N +       L  L ++      LDL  N +       F  +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 57  HLGLYLNELTLEFPS-FILTCRNLTYLDLSLNKLSGL-----IPERLFTNLGKL--EYLN 108
            L L  N  +L      I     L    L L +           +     L  L  E   
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 109 LTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP 167
           L    +      ++ + L+N+    L +                 Q +EL N  F  Q P
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFG-QFP 320

Query: 168 SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS--GGLPLSLSNLSKLN 225
           +   +LK+L+ L    N        E+ L  +L +L L+ N LS  G    S    + L 
Sbjct: 321 T--LKLKSLKRLTFTSNKGG-NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 226 DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFS 284
            L LS N +   +S+N      +LE L  Q+++        +   L  L YL +   +  
Sbjct: 377 YLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEI-GSM 342
                    L+SLE L ++GN       P ++  L NL  L L    L   + P    S+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSL 493

Query: 343 ASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIP 384
           +SL   ++ +NQL   +P+ I  RL  L K  + TN +  S P
Sbjct: 494 SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 7e-20
 Identities = 60/350 (17%), Positives = 105/350 (30%), Gaps = 37/350 (10%)

Query: 358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF- 416
           ++P+N+          +  N         F  F P L  +  S       +         
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
            L  L + GN             S+L ++               G    L  + ++ N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 477 -VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGV----LSLDSNELTGKIPTD 531
              ++   +    NL +L L  N+I      +L  L ++ +    L L  N +   I   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 532 LGKLVKLFNLNLSNNHLTGEIPK-SISNLTELAYLDLSNNKLTGDVPQE---LGRFDKLL 587
             K ++L  L L NN  +  + K  I  L  L    L   +   +   E       + L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 588 SLNLSHNDLSG--EIPSNLGNLFVLQYML---DLSSNSLSGTIP-QELGKLTSLEILNLS 641
           +L +    L+       ++ +LF     +    L S ++              LE++N  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 642 RNQLSGRIPASL----------------SSMISLRSVDFSDNELTELAVT 675
             Q       SL                  + SL  +D S N L+     
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 542 NLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP 601
                +   +IP ++   T+   LDLS N L          F +L  L+LS  ++     
Sbjct: 13  QCMELNFY-KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 602 SNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRS 661
               +L  L   L L+ N +          L+SL+ L      L+      +  + +L+ 
Sbjct: 70  GAYQSLSHLST-LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 662 VDFSDNELTELAV 674
           ++ + N +    +
Sbjct: 129 LNVAHNLIQSFKL 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  182 bits (464), Expect = 1e-49
 Identities = 101/525 (19%), Positives = 184/525 (35%), Gaps = 29/525 (5%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
               + +  + SFT  IPS L     ++ LDL  N + Y    +L  C NL  L L  ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 210 LSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-NIPPEIG 268
           ++     +  +L  L  L LSDN LS  +S++  G  + L+ L +  N +    +     
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 269 LLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327
            LT LQ L +        I       LTSL  L++    L      +L ++ ++  L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 328 SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDF 387
            +  +  +      ++S+   ++    L       +      +         S      F
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 388 GKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF 447
            +    L  +   +     +                N +               + R+  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTL-------NGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 448 DGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGI--- 504
                  +++  + +  ++  I +  ++            ++L  L L  N +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 505 PAELGNLTRLGVLSLDSNELT--GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
            A  G    L  L L  N L    K    L  L  L +L++S N     +P S     ++
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 563 AYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
            +L+LS+  +   V   +     L  L++S+N+L       L  L  L     +S N L 
Sbjct: 413 RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQEL----YISRNKLK 464

Query: 623 GTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
            T+P +      L ++ +SRNQL          + SL+ +    N
Sbjct: 465 -TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (411), Expect = 2e-42
 Identities = 93/498 (18%), Positives = 179/498 (35%), Gaps = 36/498 (7%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
            + ++ L +  N +       L +   ++ L L  + + T +   F S+ SL HL L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
            L+    S+     +L YL+L  N    L    LF NL  L+ L +   +   ++     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           + L++L +L +            + S+ ++  + L  +     +      L ++++L+LR
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS------- 235
              L       L +    S +     + S     S + L KL    L  + +        
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 236 --GEISANLIGNWTE--------LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG 285
             G+ + +     +E        +  L I       ++     LL K++ + +  +    
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 286 PIPSEIEKLTSLENLDLSGNQLSGTIPPT---LWNLTNLLSLQLFSNNLSGTIPPEIG-- 340
              S  + L SLE LDLS N +               +L +L L  N+L  ++       
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEIL 383

Query: 341 -SMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSF 399
            ++ +L + D++ N  H  +P++     K+   ++ +                +L  +  
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDV 438

Query: 400 SNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKA 459
           SNN+        L     L+EL ++ N    +LP        L  ++   NQ        
Sbjct: 439 SNNNLD-SFSLFLPR---LQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGI 492

Query: 460 FGVHPRLDFIRLSGNQFV 477
           F     L  I L  N + 
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (405), Expect = 8e-42
 Identities = 88/549 (16%), Positives = 176/549 (32%), Gaps = 67/549 (12%)

Query: 74  LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLR 132
           L+C      D      +  IP  L   +   + L+L+ N+    +        +NL  L 
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGLTAAM---KSLDLSFNKIT-YIGHGDLRACANLQVLI 56

Query: 133 LATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPP 192
           L +++ +        S+ +L+ ++L +N  +    S  G L +L++L+L  N        
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ----- 111

Query: 193 ELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESL 252
                             + G+     NL+ L  L + +     EI        T L  L
Sbjct: 112 ------------------TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 253 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
           +I+  S        +  +  + +L L+ +  +  +    + L+S+  L+L    L+    
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 313 PTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKF 372
             L        ++  +   S         +  L+ + +  +++             LN  
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDC-TLNGL 266

Query: 373 SVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSL 432
             F  + S  +       + ++  +         +L         ++ +TV  +      
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 433 PACLRNCSNLNRVRFDGNQFTGNITK---AFGVHPRLDFIRLSGNQFVGEISPDWGECRN 489
            +  ++  +L  +    N       K     G  P L  + LS N     +         
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLT 385

Query: 490 LSNLQ---LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
           L NL    + RN     +P       ++  L+L S  +   + T +     L  L++SNN
Sbjct: 386 LKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN 441

Query: 547 HLTGEIPKSISNLTE-------------------LAYLDLSNNKLTGDVPQELGRFDKLL 587
           +L       +  L E                   L  + +S N+L         R   L 
Sbjct: 442 NLD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 588 SLNLSHNDL 596
            + L  N  
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  156 bits (395), Expect = 2e-40
 Identities = 92/503 (18%), Positives = 179/503 (35%), Gaps = 55/503 (10%)

Query: 179 LDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238
            D R  +   +IP   GL   +  L L+ N+++      L   + L  L L  + ++  I
Sbjct: 10  CDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 239 SANLIGNWTELESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNNFSG-PIPSEIEKLTS 296
             +   +   LE L + +N    ++     G L+ L+YL L  N +    + S    LT+
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 297 LENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355
           L+ L +   +    I       LT+L  L++ + +L       + S+  +    ++ ++ 
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 356 HGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSG 415
              L      L  +    +   N +                  F  +    +        
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLA-----------------RFQFSPLPVDEVSSPMKK 227

Query: 416 FALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ 475
            A     +   +F   L   LR    L+ V FD     G      G     +   +S   
Sbjct: 228 LAFRGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNG-----LGDFNPSESDVVSELG 281

Query: 476 FVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKL 535
            V        E   +  L + +  +   +      L ++  ++++++++     +    L
Sbjct: 282 KV--------ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 536 VKLFNLNLSNNHLTGEIPKS---ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL--- 589
             L  L+LS N +  E  K+         L  L LS N L   + +       L +L   
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSL 392

Query: 590 NLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRI 649
           ++S N     +P +      +++ L+LSS  +   +   +    +LE+L++S N L    
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRF-LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SF 446

Query: 650 PASLSSMISLRSVDFSDNELTEL 672
              L     L+ +  S N+L  L
Sbjct: 447 SLFLPR---LQELYISRNKLKTL 466

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 3e-32
 Identities = 67/430 (15%), Positives = 139/430 (32%), Gaps = 43/430 (10%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
            +L+ LQ L + +      I     + L  +  L++    L         S+  + HL L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           +L+E       F     ++ YL+L    L+                +     +       
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           + ++L  L+   L  ++            +   L +   +           +   ++ L 
Sbjct: 239 SFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           +    L Y +     L   +  + +  +++         +L  L  L LS+N +      
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV----- 347

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFS--GPIPSEIEKLTSLE 298
                        ++N++         G    LQ L L +N+          +  L +L 
Sbjct: 348 ----------EEYLKNSAC-------KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 299 NLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGE 358
           +LD+S N     +P +      +  L L S  +   +   I    +L   DV+ N L   
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL-DS 445

Query: 359 LPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFAL 418
               + RL +L      + N   ++P       P L+ +  S N              +L
Sbjct: 446 FSLFLPRLQELY----ISRNKLKTLPDAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 419 EELTVNGNNF 428
           +++ ++ N +
Sbjct: 500 QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (288), Expect = 8e-27
 Identities = 68/377 (18%), Positives = 122/377 (32%), Gaps = 35/377 (9%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L+ L  L +   +L       L S+R + +L L  +            + S+ +L L  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 63  NELTLEFPSFI-----------LTCRNLTYLDLSLNKLSGL------IPERLFTNLGKLE 105
             L     S +           L  R     D S N+L  L      + E  F +     
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ 165
             +   ++          +   +  L +        +      +  ++ + + N+     
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 166 IPSSLGQLKNLQHLDLRMNALNYTIPPE---LGLCTNLSYLALAVNQLS--GGLPLSLSN 220
             S    LK+L+ LDL  N +           G   +L  L L+ N L         L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 221 LSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 280
           L  L  L +S N        +      ++  L + +      +     +   L+ L +  
Sbjct: 386 LKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLDVSN 440

Query: 281 NNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI- 339
           NN           L  L+ L +S N+L  T+P        LL +++  N L  ++P  I 
Sbjct: 441 NNLDS-FSLF---LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIF 493

Query: 340 GSMASLVAFDVNTNQLH 356
             + SL    ++TN   
Sbjct: 494 DRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (282), Expect = 4e-26
 Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 35/336 (10%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           LS ++YL + D NL       L        +              F+ +  L    L L+
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 64  ELTLEFPSFI------------------LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 105
           E+  +  +                    +    +  L +    L       +++ L K++
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY-DLSTVYSLLEKVK 313

Query: 106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS---GPIPGDIGSMSNLQLVELFNNSF 162
            + +  ++           L +L  L L+ N             G+  +LQ + L  N  
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 163 T--GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSN 220
               +    L  LKNL  LD+  N  +  +P        + +L L+   +     +    
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCI 429

Query: 221 LSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 280
              L  L +S+N L    S  L      L+ L I  N       P+  L   L  + + R
Sbjct: 430 PQTLEVLDVSNNNLD-SFSLFL----PRLQELYISRNKL--KTLPDASLFPVLLVMKISR 482

Query: 281 NNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW 316
           N          ++LTSL+ + L  N    + P   +
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 57/301 (18%), Positives = 108/301 (35%), Gaps = 24/301 (7%)

Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
            +       + SF+  +P  L +  A++ L ++ N  T      LR C+NL  +    ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNRISG-GIPAELG 509
                  AF     L+ + LS N     +S  W G   +L  L L  N     G+ +   
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 510 NLTRLGVLSLDSNELTGKIP-TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
           NLT L  L + + E   +I   D   L  L  L +    L     +S+ ++ ++ +L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 569 NNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS------ 622
            ++    +         +  L L   +L+    S L    V   M  L+           
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 623 ---GTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM--------ISLRSVDFSDNELTE 671
                + + + +L+ +E  + + N L    P+    +        +++R +      L  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 672 L 672
            
Sbjct: 301 D 301

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (471), Expect = 4e-49
 Identities = 123/609 (20%), Positives = 208/609 (34%), Gaps = 69/609 (11%)

Query: 11  SVYDNNLNG--AIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLE 68
            +          +P     L     L L  N++ T   S F  +  L  L L      L 
Sbjct: 7   RIAFYRFCNLTQVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 69  FPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKL 125
                     NL  LDL  +K+   +    F  L  L  L L        +  +     L
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 126 SNLIDLRLATNKFSG-PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQL--KNLQHLDLR 182
             L  L L+ N+     +    G +++L+ ++  +N         L  L  K L    L 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N+L   +  + G C N               P     L  L+   +S N  + +I+ N 
Sbjct: 183 ANSLYSRVSVDWGKCMN---------------PFRNMVLEILD---VSGNGWTVDITGNF 224

Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKL--TSLENL 300
               ++ ++  +              L   +       +N   P  +    L  +S+ +L
Sbjct: 225 SNAISKSQAFSLI-------------LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           DLS   +          L +L  L L  N ++         + +L   +++ N L     
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
            N   L K+    +  N+ +  I     KF   L  +   +N+ +      +    ++ +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH-PRLDFIRLSGNQFVGE 479
           + ++GN    +LP   +     N +    N+        F +  P L  + L+ N+F   
Sbjct: 386 IFLSGNKLV-TLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SS 440

Query: 480 ISPDW--GECRNLSNLQLDRNRISGGIPAEL-----GNLTRLGVLSLDSNELTGKIPTDL 532
            S D    E  +L  L L  N +      EL       L+ L VL L+ N L    P   
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 533 GKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLS 592
             L  L  L+L++N LT  +  +      L  LD+S N+L    P     F  L  L+++
Sbjct: 501 SHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLLAPNPDV---FVSLSVLDIT 555

Query: 593 HNDLSGEIP 601
           HN    E  
Sbjct: 556 HNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  183 bits (465), Expect = 3e-48
 Identities = 104/538 (19%), Positives = 179/538 (33%), Gaps = 33/538 (6%)

Query: 149 MSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPE-LGLCTNLSYLALAV 207
           ++  + + L  N       SS   L+ LQ L+L       TI  E      NL  L L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGE-ISANLIGNWTELESLQIQNNSFMG-NIPP 265
           +++    P +   L  L +L L    LS   +      N   L  L +  N      + P
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLT--SLENLDLSGNQLSGTIPPTLWNLTNLL- 322
             G L  L+ +    N        E+E L   +L    L+ N L   +        N   
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 323 SLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGS 382
           ++ L   ++SG       +  ++      +N +      ++     +       +N    
Sbjct: 203 NMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 383 IPGDF-GKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
               F G    S+ ++  S+            +   L+ L +  N              N
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
           L  +    N      +  F   P++ +I L  N         +     L  L L  N ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 502 GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG-EIPKSISNLT 560
                 +  +  +  + L  N+L      +L        ++LS N L   +I   +  + 
Sbjct: 376 -----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVP 426

Query: 561 ELAYLDLSNNKLTGDVPQEL-GRFDKLLSLNLSHNDLSGEIPSNL-----GNLFVLQYML 614
            L  L L+ N+ +     +       L  L L  N L     + L       L  LQ  L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV-L 485

Query: 615 DLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
            L+ N L+   P     LT+L  L+L+ N+L+      L +  +L  +D S N+L   
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  156 bits (396), Expect = 1e-39
 Identities = 98/527 (18%), Positives = 176/527 (33%), Gaps = 60/527 (11%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSK--FSSMPSLTHLGL 60
           +L  L+ L +  + +    P     L  +  L L    L         F ++ +LT L L
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 61  YLNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG--KLEYLNLTENQFQGK 117
             N++  L          +L  +D S N++   + E     L    L + +L  N    +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 118 LSPNVSKLSNLI-DLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176
           +S +  K  N   ++ L     S       G+   + +   F+N+ +     SL    ++
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 177 QHLDLRMNALNYTIPPEL--GLC-TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF 233
                  + +          GL  +++ +L L+   +          L  L  L L+ N 
Sbjct: 243 MGAGFGFHNI-KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK 293
           ++                 +I + +F G        L  LQ L L  N       S    
Sbjct: 302 IN-----------------KIADEAFYG--------LDNLQVLNLSYNLLGELYSSNFYG 336

Query: 294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353
           L  +  +DL  N ++     T   L  L +L L  N L+      I  + S+    ++ N
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN 391

Query: 354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
           +L      N++     N   +  N         F    P L  +  + N FS     +  
Sbjct: 392 KLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 414 SGF-ALEELTVNGNNFTGSLPACL-----RNCSNLNRVRFDGNQFTGNITKAFGVHPRLD 467
           S   +LE+L +  N    +    L        S+L  +  + N         F     L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 468 FIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRL 514
            + L+ N+    +        NL  L + RN++    P    +L+ L
Sbjct: 508 GLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (378), Expect = 2e-37
 Identities = 103/479 (21%), Positives = 168/479 (35%), Gaps = 52/479 (10%)

Query: 219 SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLF 277
             L+    L LS N++   ++A+      +L+ L++ +      I  E    L  L+ L 
Sbjct: 21  QVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 278 LYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP--TLWNLTNLLSLQLFSNNLSG-T 334
           L  +      P   + L  L  L L    LS  +       NL  L  L L  N +    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 335 IPPEIGSMASLVAFDVNTNQLHGELPENISRL--VKLNKFSVFTNNFSGSIPGDFGKFSP 392
           + P  G + SL + D ++NQ+       +  L    L+ FS+  N+    +  D+GK   
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
              N+       SG       +G+ ++      N  + S    L    ++    F  +  
Sbjct: 200 PFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
                                N F G          ++ +L L    +          L 
Sbjct: 253 K----------------DPDQNTFAGLARS------SVRHLDLSHGFVFSLNSRVFETLK 290

Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
            L VL+L  N++          L  L  LNLS N L      +   L ++AY+DL  N +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 573 TGDVPQELGRFDKLLSLNLSHN--------------DLSGEIPSNLGNLFVLQYMLDLSS 618
                Q     +KL +L+L  N               LSG     L  + +   ++ LS 
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 619 NSLSG-TIPQELGKLTSLEILNLSRNQLSG-RIPASLSSMISLRSVDFSDNELTELAVT 675
           N L    I   L ++  L+IL L++N+ S      + S   SL  +   +N L     T
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (336), Expect = 3e-32
 Identities = 85/497 (17%), Positives = 152/497 (30%), Gaps = 63/497 (12%)

Query: 2   GDLSELQYLSVYDNNLNG-AIPFQLSSLRKVRYLDLGGNFLETPDWSKFSS--MPSLTHL 58
            +L  L  L +  N +    +      L  ++ +D   N +      +       +L+  
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 59  GLYLNELTLEFPSFILTCRN------LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
            L  N L          C N      L  LD+S N  +  I       + K +  +L   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL--- 236

Query: 113 QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF--NNSFTGQIPSSL 170
                         +++      +    P       ++   +  L   +           
Sbjct: 237 ----------ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS 230
             LK+L+ L+L  N +N           NL  L L+ N L      +   L K+  + L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 231 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE 290
            N ++  I         +L++L +++N+        I  +  +  +FL  N         
Sbjct: 347 KNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-----VT 395

Query: 291 IEKLT-SLENLDLSGNQLSG-TIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVA 347
           + K+  +   + LS N+L    I   L  + +L  L L  N  S     +      SL  
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 348 FDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE 407
             +  N L       +          VF                  L  +  ++N  +  
Sbjct: 456 LFLGENMLQLAWETELCW-------DVFEGL-------------SHLQVLYLNHNYLNSL 495

Query: 408 LPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLD 467
            P       AL  L++N N  T  L       +NL  +    NQ        F     L 
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVF---VSLS 550

Query: 468 FIRLSGNQFVGEISPDW 484
            + ++ N+F+ E     
Sbjct: 551 VLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (322), Expect = 2e-30
 Identities = 75/360 (20%), Positives = 134/360 (37%), Gaps = 25/360 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
            S +++L +    +         +L+ ++ L+L  N +       F  + +L  L L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
            L   + S       + Y+DL  N ++ +I ++ F  L KL+ L+L +N         + 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIH 378

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLR 182
            + ++ D+ L+ NK       ++       L+ L  N      I   L ++ +LQ L L 
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 183 MNALNYTIPPEL-GLCTNLSYLALAVNQLSGGLPLSL-----SNLSKLNDLGLSDNFLSG 236
            N  +     +      +L  L L  N L       L       LS L  L L+ N+L+ 
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN- 493

Query: 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTS 296
            +   +  + T L  L + +N     +     L   L+ L + RN    P P       S
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDV---FVS 548

Query: 297 LENLDLSGNQLSGTIP-PTLWNLTNLLSLQLFSNNLSGT-IPPEIGSMASLVAFDVNTNQ 354
           L  LD++ N+        T  N  N  ++ +         + P+  S  SL +       
Sbjct: 549 LSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCD 608

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.4 bits (240), Expect = 1e-20
 Identities = 57/262 (21%), Positives = 95/262 (36%), Gaps = 20/262 (7%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L ++ Y+ +  N++          L K++ LDL  N L T        +PS+  + L  
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSG 390

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+L     +          + LS N+L  L        +  L+ L L +N+F        
Sbjct: 391 NKLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 123 -SKLSNLIDLRLATNKFSGPIPGDI-----GSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176
            S+  +L  L L  N        ++       +S+LQ++ L +N      P     L  L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236
           + L L  N L         L  NL  L ++ NQL      +      L+ L ++ N    
Sbjct: 507 RGLSLNSNRLTVL--SHNDLPANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFIC 561

Query: 237 EISANLIGNWTELESLQIQNNS 258
           E   +   NW    ++ I    
Sbjct: 562 ECELSTFINWLNHTNVTIAGPP 583

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 565 LDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGT 624
                  LT  VPQ L        L LS N +     S+   L  LQ  L+L S     T
Sbjct: 9   AFYRFCNLT-QVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQL-LELGSQYTPLT 63

Query: 625 IPQE-LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAV 674
           I +E    L +L IL+L  +++    P +   +  L  +      L++  +
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 39/213 (18%), Positives = 62/213 (29%), Gaps = 12/213 (5%)

Query: 1   MGDLSELQYLSVYDNNLNG-AIPFQLSSLRKVRYLDLGGNFLETP-----DWSKFSSMPS 54
           +  +  LQ L +  N  +  +     S    +  L LG N L+        W  F  +  
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 55  LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
           L  L L  N L    P        L  L L+ N+L+ L    L  N   LE L+++ NQ 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN---LEILDISRNQL 538

Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLK 174
               +PN     +L  L +  NKF                                    
Sbjct: 539 L---APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFS 595

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAV 207
            +    L     +     +    +      + +
Sbjct: 596 GVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  165 bits (420), Expect = 2e-45
 Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 25/331 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            +L  +  L V    +       +  L  + YL+L GN +     S  S++  LT+L + 
Sbjct: 41  EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIG 96

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N++T    S +    NL  L L+ + +S + P     NL K+  LNL  N     LSP 
Sbjct: 97  TNKITD--ISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP- 150

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           +S ++ L  L +  +K     P  I ++++L  + L  N      P  L  L +L +   
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
            +N +  T    +   T L+ L +  N+++      L+NLS+L  L +  N +S  I+A 
Sbjct: 207 YVNQI--TDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD-INA- 260

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
            + + T+L+ L + +N    +    +  L++L  LFL  N         I  LT+L  L 
Sbjct: 261 -VKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332
           LS N ++   P  L +L+ + S    +  + 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  163 bits (415), Expect = 1e-44
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 27/353 (7%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           DL+E     +   ++   +      L  +  L + G  + +        + +L +L L  
Sbjct: 20  DLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNG 75

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N++T    S +     LT L +  NK++ +       NL  L  L L E+         +
Sbjct: 76  NQIT--DISPLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISD--ISPL 128

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           + L+ +  L L  N     +   + +M+ L  + +  +       + +  L +L  L L 
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLN 185

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N +       L   T+L Y    VNQ++   P  ++N+++LN L + +N ++       
Sbjct: 186 YNQI--EDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--- 238

Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
           + N ++L  L+I  N         +  LTKL+ L +  N  S    S +  L+ L +L L
Sbjct: 239 LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355
           + NQL       +  LTNL +L L  N+++   P  + S++ + + D     +
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  156 bits (396), Expect = 3e-42
 Identities = 87/423 (20%), Positives = 165/423 (39%), Gaps = 77/423 (18%)

Query: 249 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308
             +L          I P    L +     L + + +  +    E+L S+  L ++G +++
Sbjct: 2   AATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 309 GTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVK 368
            +I   +  LTNL  L L  N ++   P  + ++  L    + TN++       +  L  
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 369 LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNF 428
           L +  +  +N S   P      +                          +  L +  N+ 
Sbjct: 112 LRELYLNEDNISDISP--LANLT-------------------------KMYSLNLGANHN 144

Query: 429 TGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECR 488
             S  + L N + LN +    ++                                     
Sbjct: 145 L-SDLSPLSNMTGLNYLTVTESKVKD--------------------------VTPIANLT 177

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
           +L +L L+ N+I    P  L +LT L   +   N++T   P  +  + +L +L + NN +
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLF 608
           T   P  ++NL++L +L++  N+++      +    KL  LN+  N +S    S L NL 
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 609 VLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668
            L   L L++N L     + +G LT+L  L LS+N ++   P  L+S+  + S DF++  
Sbjct: 288 QLNS-LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 669 LTE 671
           + +
Sbjct: 345 IKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  154 bits (392), Expect = 1e-41
 Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 23/308 (7%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L+ L+YL++  N +    P  LS+L K+  L +G N +     S   ++ +L  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             + ++    S +     +  L+L  N     +     +N+  L YL +TE++ +     
Sbjct: 118 NEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD--VT 171

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            ++ L++L  L L  N+     P  + S+++L     + N  T   P  +  +  L  L 
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           +  N +  T    L   + L++L +  NQ+S     ++ +L+KL  L +  N +S +IS 
Sbjct: 228 IGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISV 282

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             + N ++L SL + NN         IG LT L  LFL +N+ +   P  +  L+ +++ 
Sbjct: 283 --LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338

Query: 301 DLSGNQLS 308
           D +   + 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (387), Expect = 6e-41
 Identities = 76/351 (21%), Positives = 137/351 (39%), Gaps = 27/351 (7%)

Query: 34  LDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 93
           L               + +       L    +T           ++T L ++  K++ + 
Sbjct: 5   LATLPA--PINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQ 60

Query: 94  PERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQ 153
                  L  LEYLNL  NQ        +S L  L +L + TNK +      + +++NL+
Sbjct: 61  G---IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLR 113

Query: 154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG 213
            + L  ++ +    S L  L  +  L+L  N    +    L   T L+YL +  +++   
Sbjct: 114 ELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD- 169

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 273
               ++NL+ L  L L+ N +        + + T L       N      P  +  +T+L
Sbjct: 170 -VTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSG 333
             L +  N  +   P  +  L+ L  L++  NQ+S      + +LT L  L + SN +S 
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 334 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP 384
                + +++ L +  +N NQL  E  E I  L  L    +  N+ +   P
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 1e-40
 Identities = 85/400 (21%), Positives = 151/400 (37%), Gaps = 56/400 (14%)

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
             L+ L   +NQ+        ++L++     L    ++  ++         +  L +   
Sbjct: 3   ATLATLPAPINQIF-----PDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGE 54

Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317
                    I  LT L+YL L  N  +   P  +  L  L NL +  N++  T    L N
Sbjct: 55  KV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 318 LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN 377
           LTNL  L L  +N+S      + ++  + + ++  N         +S +  LN  +V  +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

Query: 378 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR 437
                 P         L ++S + N         L S  +L   T   N  T   P  + 
Sbjct: 166 KVKDVTP--IANL-TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VA 218

Query: 438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDR 497
           N + LN ++   N+ T                                    L+ L++  
Sbjct: 219 NMTRLNSLKIGNNKITD--------------------------LSPLANLSQLTWLEIGT 252

Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
           N+IS      + +LT+L +L++ SN+++    + L  L +L +L L+NN L  E  + I 
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
            LT L  L LS N +T    + L    K+ S + ++  + 
Sbjct: 309 GLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (376), Expect = 2e-39
 Identities = 84/375 (22%), Positives = 142/375 (37%), Gaps = 30/375 (8%)

Query: 79  LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
              L      ++ + P     +L +     L +            +L ++  L +A  K 
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCT 198
           +      I  ++NL+ + L  N  T   P  L  L  L +L +  N +  T    L   T
Sbjct: 57  ASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLT 110

Query: 199 NLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS 258
           NL  L L  + +S      L+NL+K+  L L  N    ++S   + N T L  L +  + 
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK 166

Query: 259 FMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318
                   I  LT L  L L  N      P  +  LTSL       NQ++   P  + N+
Sbjct: 167 V--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220

Query: 319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN 378
           T L SL++ +N ++   P  + +++ L   ++ TNQ+       +  L KL   +V +N 
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 379 FSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRN 438
            S             L ++  +NN    E    +     L  L ++ N+ T   P  L +
Sbjct: 277 ISDISV--LNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331

Query: 439 CSNLNRVRFDGNQFT 453
            S ++   F      
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 1e-30
 Identities = 59/281 (20%), Positives = 112/281 (39%), Gaps = 22/281 (7%)

Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
              I       S +  +  E     ++ +L V G     S+   +   +NL  +  +GNQ
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQ 77

Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNL 511
            T           +L  + +  N+             NL  L L+ + IS   P  L NL
Sbjct: 78  ITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANL 131

Query: 512 TRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNK 571
           T++  L+L +N       + L  +  L  L ++ + +    P  I+NLT+L  L L+ N+
Sbjct: 132 TKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 572 LTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK 631
           +       L     L       N ++   P  + N+  L   L + +N ++   P  L  
Sbjct: 189 IED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS-LKIGNNKITDLSP--LAN 241

Query: 632 LTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           L+ L  L +  NQ+S     ++  +  L+ ++   N+++++
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI 280

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 6e-14
 Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
            L      +    P   ++L E     L    +T  V       + +  L ++   ++  
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS- 58

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
               +  L  L+Y L+L+ N ++   P  L  L  L  L +  N+++    ++L ++ +L
Sbjct: 59  -IQGIEYLTNLEY-LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 660 RSVDFSDNELTEL 672
           R +  +++ ++++
Sbjct: 113 RELYLNEDNISDI 125

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  150 bits (382), Expect = 2e-40
 Identities = 60/320 (18%), Positives = 104/320 (32%), Gaps = 20/320 (6%)

Query: 28  LRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87
                 L   G+    P     S      +             +      N      +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGR 66

Query: 88  KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIG 147
            L                 L L       +      +LS+L  + +        +P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQ 124

Query: 148 SMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC---------T 198
             + L+ + L  N     +P+S+  L  L+ L +R       +P  L             
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 199 NLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS 258
           NL  L L    +   LP S++NL  L  L + ++ LS  +    I +  +LE L ++  +
Sbjct: 184 NLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGCT 240

Query: 259 FMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318
            + N PP  G    L+ L L   +    +P +I +LT LE LDL G      +P  +  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 319 TNLLSLQLFSNNLSGTIPPE 338
                + +   +L   +   
Sbjct: 301 PANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (348), Expect = 6e-36
 Identities = 60/403 (14%), Positives = 116/403 (28%), Gaps = 79/403 (19%)

Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLT 319
           MG+        +  + L+   +    P    + +     N D +    +        N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 320 NLLSLQLFSNNLSGTIPPEIG--SMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN 377
           N          L       +   +    VA ++ +  L  + P+   RL  L   ++   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 378 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR 437
                +P    +F+  L  ++ + N     LP  + S   L EL++        LP  L 
Sbjct: 115 GLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDR 497
           +                                                  NL +L+L+ 
Sbjct: 172 STDASGEH---------------------------------------QGLVNLQSLRLEW 192

Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
             I   +PA + NL  L  L + ++ L+  +   +  L KL  L+L         P    
Sbjct: 193 TGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 558 NLTELAYLDLSN-NKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDL 616
               L  L L + + L                           +P ++  L  L+  LDL
Sbjct: 251 GRAPLKRLILKDCSNLL-------------------------TLPLDIHRLTQLEK-LDL 284

Query: 617 SSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
                   +P  + +L +  I+ +  +  +        +  + 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (332), Expect = 9e-34
 Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 18/277 (6%)

Query: 407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFD--GNQFTGNITKAFGVHP 464
                  +    +  T  G     +    L + +   RV  +                  
Sbjct: 47  HSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 465 RLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
            L  + +     + E+     +   L  L L RN +   +PA + +L RL  LS+ +   
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPE 162

Query: 525 TGKIPTDLGK---------LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGD 575
             ++P  L           LV L +L L    +   +P SI+NL  L  L + N+ L+  
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220

Query: 576 VPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSL 635
           +   +    KL  L+L         P   G    L+  L L   S   T+P ++ +LT L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR-LILKDCSNLLTLPLDIHRLTQL 279

Query: 636 EILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           E L+L       R+P+ ++ + +   +    +   +L
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 2e-33
 Identities = 54/317 (17%), Positives = 97/317 (30%), Gaps = 23/317 (7%)

Query: 146 IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLAL 205
               S  + +    ++        L Q +   + D                  N      
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETR 63

Query: 206 AVNQLSGGLPLSLSNLS--KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI 263
               L       L + +      L L    L  +         + L+ + I     M  +
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGLM-EL 119

Query: 264 PPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL-------- 315
           P  +     L+ L L RN     +P+ I  L  L  L +        +P  L        
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 316 -WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSV 374
              L NL SL+L    +  ++P  I ++ +L +  +  + L   L   I  L KL +  +
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 375 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPA 434
                  + P  FG  +  L  +   + S    LP ++     LE+L + G      LP+
Sbjct: 237 RGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 435 CLRNCSNLNRVRFDGNQ 451
            +        +    + 
Sbjct: 296 LIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (290), Expect = 3e-28
 Identities = 47/241 (19%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLYL 62
                 L +    L    P Q   L  ++++ +    L   PD         L  L L  
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLAR 136

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERL--------FTNLGKLEYLNLTENQF 114
           N L    P+ I +   L  L +        +PE L           L  L+ L L     
Sbjct: 137 NPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLK 174
           +  L  +++ L NL  L++  +  S  +   I  +  L+ ++L   +     P   G   
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
            L+ L L+  +   T+P ++   T L  L L        LP  ++ L     + +  +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 235 S 235
           +
Sbjct: 314 A 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 19/211 (9%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           M   + L+ L++  N L  A+P  ++SL ++R L +           + + +P       
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-------PELTELPE------ 168

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
                + +         NL  L L    +  L       NL  L+ L +  +     L P
Sbjct: 169 --PLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLS-ALGP 223

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            +  L  L +L L         P   G  + L+ + L + S    +P  + +L  L+ LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLS 211
           LR       +P  +        + +  +  +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 2   GDLSELQYLSVYDNNL---------NGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSS 51
             L+ L+ LS+              +     +   L  ++ L L    + + P     ++
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIAN 204

Query: 52  MPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
           + +L  L +  + L+      I     L  LDL         P   F     L+ L L +
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKD 262

Query: 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLG 171
                 L  ++ +L+ L  L L        +P  I  +    ++ +  +           
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 172 QL 173
             
Sbjct: 323 AR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 4/101 (3%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDL-GGNFLET-PDWSKFSSMPSLTHL 58
           +  L +L+ L +         P        ++ L L   + L T P       +  L  L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKL 282

Query: 59  GLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT 99
            L         PS I        + +  +  + L   R   
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  153 bits (388), Expect = 3e-40
 Identities = 105/507 (20%), Positives = 173/507 (34%), Gaps = 78/507 (15%)

Query: 166 IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLN 225
           I         LQ      + L   +P E     + +    A ++     P       ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 226 DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG 285
              L D                +   L++ N     ++P        L+ L    N+ + 
Sbjct: 62  VSRLRDCLD------------RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT- 104

Query: 286 PIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL 345
            +P   + L SL   + +   LS   P        L  L + +N L     PE+ + + L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL--EKLPELQNSSFL 155

Query: 346 VAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS 405
              DV+ N L  +LP+    L  +       NN    +P +     P L  +   NNS  
Sbjct: 156 KIIDVDNNSLK-KLPDLPPSLEFIA----AGNNQLEELP-ELQNL-PFLTAIYADNNSLK 208

Query: 406 GELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPR 465
            +LP    S   LE +    N     LP  L+N   L  +  D N     +     + P 
Sbjct: 209 -KLPDLPLS---LESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL----LKTLPDLPPS 258

Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
           L+ + +  N             ++L+ L +  N  SG +     NL  L   +  SNE+ 
Sbjct: 259 LEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-LSELPPNLYYL---NASSNEIR 310

Query: 526 GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
             +      L +L   N+SNN L  E+P     L  L     S N L  +VP+       
Sbjct: 311 -SLCDLPPSLEEL---NVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQ---N 358

Query: 586 LLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQL 645
           L  L++ +N L  E P    ++       DL  NS    +P+    L  L   ++  N L
Sbjct: 359 LKQLHVEYNPLR-EFPDIPESV------EDLRMNSHLAEVPELPQNLKQL---HVETNPL 408

Query: 646 SGRIPASLSSMISLRSVDFSDNELTEL 672
               P    S   +  +  +   + + 
Sbjct: 409 R-EFPDIPES---VEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (372), Expect = 4e-38
 Identities = 103/531 (19%), Positives = 180/531 (33%), Gaps = 79/531 (14%)

Query: 92  LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSN 151
            I  R  +N   L+      +    ++      + +  +   A +++    P   G    
Sbjct: 2   FINPRNVSNT-FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 152 LQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS 211
           + +  L +              +    L+L    L+ ++P       +L  L  + N L+
Sbjct: 60  MAVSRLRDCL-----------DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT 104

Query: 212 GGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT 271
             LP    +L  L     +   LS             LE L + NN       PE+   +
Sbjct: 105 E-LPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQL--EKLPELQNSS 153

Query: 272 KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNL 331
            L+ + +  N+    +P       SLE +    NQL     P L NL  L ++   +N+L
Sbjct: 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSL 207

Query: 332 SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS 391
              +P    S+ S+       N L  ELPE +  L  L       N    ++P       
Sbjct: 208 K-KLPDLPLSLESI---VAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPP--- 257

Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
            SL  ++  +N  + +LP    S   L  L V+ N F+  L     N   LN      N+
Sbjct: 258 -SLEALNVRDNYLT-DLPELPQS---LTFLDVSENIFS-GLSELPPNLYYLN---ASSNE 308

Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNL 511
               I     + P L+ + +S N+ + E+         L  L    N ++  +P    NL
Sbjct: 309 ----IRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPELPQNL 359

Query: 512 TRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNK 571
                L ++ N L  + P     +  L      N+HL  E+P+   NL +L    +  N 
Sbjct: 360 K---QLHVEYNPLR-EFPDIPESVEDL----RMNSHLA-EVPELPQNLKQL---HVETNP 407

Query: 572 LTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
           L  + P        +  L ++   +  +                   +   
Sbjct: 408 LR-EFPDIPE---SVEDLRMNSERVV-DPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (350), Expect = 3e-35
 Identities = 90/480 (18%), Positives = 148/480 (30%), Gaps = 83/480 (17%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLR-------------KVRYLDLGGNFLETPDWS 47
             ++          +      P      R             +   L+L    L +    
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP-- 87

Query: 48  KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIP--ERL-------- 97
                P L  L    N LT E P    + ++L   + +L  LS L P  E L        
Sbjct: 88  --ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144

Query: 98  ----FTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQ 153
                 N   L+ +++  N     L        +L  +    N+    +P ++ ++  L 
Sbjct: 145 KLPELQNSSFLKIIDVDNNS----LKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLT 198

Query: 154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG 213
            +   NNS   ++P       +L+ +    N L     PEL     L+ +    N L   
Sbjct: 199 AIYADNNSLK-KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-T 251

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 273
           LP    +L  LN        L       L  + T L+  +   +           L   L
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLS-------ELPPNL 299

Query: 274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSG 333
            YL    N     I S  +   SLE L++S N+L   +P     L     L    N+L+ 
Sbjct: 300 YYLNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA- 350

Query: 334 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPS 393
            +P    ++  L    V  N L  E P+    +  L       N+    +P    +   +
Sbjct: 351 EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR-----MNSHLAEVP----ELPQN 397

Query: 394 LINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT 453
           L  +    N    E P    S   +E+L +N                 L    F+ +   
Sbjct: 398 LKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (348), Expect = 5e-35
 Identities = 110/571 (19%), Positives = 180/571 (31%), Gaps = 126/571 (22%)

Query: 27  SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86
           S   ++      + L      +  ++ S T      +E     P      R +    L  
Sbjct: 9   SNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 87  NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI 146
                           +   L L                                +P   
Sbjct: 68  CLDR------------QAHELELNNLGLS-------------------------SLPELP 90

Query: 147 GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA 206
               +L+ +    NS T ++P     LK+L   +  + AL+        L   L YL ++
Sbjct: 91  P---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVS 139

Query: 207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266
            NQL   LP  L N S L  + + +N L       L      LE +   NN       PE
Sbjct: 140 NNQLE-KLP-ELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQL--EELPE 190

Query: 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL 326
           +  L  L  ++   N+    +    +   SLE++    N L     P L NL  L ++  
Sbjct: 191 LQNLPFLTAIYADNNS----LKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYA 244

Query: 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD 386
            +N L  T+P       SL A +V  N L  +LPE    L  L+      +  S      
Sbjct: 245 DNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELP--- 296

Query: 387 FGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVR 446
                P+L  ++ S+N     L     S   LEEL V+ N     LPA       L    
Sbjct: 297 -----PNLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPPRLERLI--- 343

Query: 447 FDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPA 506
                                    S N    E+       +NL  L ++ N +    P 
Sbjct: 344 ------------------------ASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD 374

Query: 507 ELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLD 566
              ++  L +    ++ L  ++P     L +   L++  N L  E P    ++ +   L 
Sbjct: 375 IPESVEDLRM----NSHLA-EVPELPQNLKQ---LHVETNPLR-EFPDIPESVED---LR 422

Query: 567 LSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           +++ ++           DKL      H+   
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (347), Expect = 8e-35
 Identities = 100/546 (18%), Positives = 175/546 (32%), Gaps = 102/546 (18%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
            + LQ    + +NL   +P +  +++         +  E            +    L   
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL--- 65

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
                        R    L+L+   LS L           LE L  + N    +L     
Sbjct: 66  --------RDCLDRQAHELELNNLGLSSLPEL-----PPHLESLVASCNSLT-ELPELPQ 111

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
            L +L+         S   P        L+ + + NN    ++P  L     L+ +D+  
Sbjct: 112 SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDN 162

Query: 184 NALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
           N+L   +P       +L ++A   NQL   LP  L NL  L  +   +N L       L 
Sbjct: 163 NSLK-KLPDLPP---SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-----KLP 211

Query: 244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS 303
                LES+   NN       PE+  L  L  ++   N     +P       SLE L++ 
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLP---PSLEALNVR 265

Query: 304 GNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI 363
            N L+  +P    +LT L   +   + LS   P       +L   + ++N++   L +  
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLP 316

Query: 364 SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTV 423
             L +LN     +NN    +P    +    L  +  S N  + E+P    +   L++L V
Sbjct: 317 PSLEELN----VSNNKLIELPALPPR----LERLIASFNHLA-EVPELPQN---LKQLHV 364

Query: 424 NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD 483
             N      P    +  +L       +                                 
Sbjct: 365 EYNPLR-EFPDIPESVEDLRM----NSHLAEVPE-------------------------- 393

Query: 484 WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNL 543
               +NL  L ++ N +    P    ++     L ++S  +            KL +   
Sbjct: 394 --LPQNLKQLHVETNPLRE-FPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 544 SNNHLT 549
            ++H  
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 36/200 (18%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
              L +L V +N  +G +     +L    YL+   N +     S     PSL  L +  N
Sbjct: 276 PQSLTFLDVSENIFSG-LSELPPNLY---YLNASSNEIR----SLCDLPPSLEELNVSNN 327

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ-------- 115
           +L  E P+       L  L  S N L+ +           L+ L++  N  +        
Sbjct: 328 KLI-ELPALP---PRLERLIASFNHLAEVPEL-----PQNLKQLHVEYNPLREFPDIPES 378

Query: 116 -------GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS 168
                    L+       NL  L + TN      P    S+ +L    + +         
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIPESVEDL---RMNSERVVDPYEF 434

Query: 169 SLGQLKNLQHLDLRMNALNY 188
           +      L+      +  ++
Sbjct: 435 AHETTDKLEDDVFEHHHHHH 454

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  147 bits (373), Expect = 1e-38
 Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 22/331 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L+  + ++  ++ +       L S R+V  L+L    +E  D   F+   ++  L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N +    P        LT L L  N LS  +P  +F N  KL  L+++ N  + ++  + 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 123 -SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
               ++L +L+L++N+ +     D+  + +L    +  N  +     +L     ++ LD 
Sbjct: 161 FQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N++N  +     +   L+ L L  N L+      L N   L ++ LS N L  +I  +
Sbjct: 213 SHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYH 266

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
                  LE L I NN  +  +      +  L+ L L  N+    +     +   LENL 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332
           L  N +  T+  +      L +L L  N+  
Sbjct: 325 LDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (349), Expect = 1e-35
 Identities = 62/367 (16%), Positives = 131/367 (35%), Gaps = 30/367 (8%)

Query: 7   LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT 66
              + +     +    F+  +L   + +    + +     +   S   +  L L   ++ 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 67  LEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SK 124
            E  ++       +  L +  N +  L P  +F N+  L  L L  N     L   +   
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
              L  L ++ N           + ++LQ ++L +N  T  +   L  + +L H ++  N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 196

Query: 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG 244
            L+      L +   +  L  + N ++         L+ L    L  N L+ + +   + 
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLT-DTAW--LL 245

Query: 245 NWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS 303
           N+  L  + +  N     I       + +L+ L++  N     +    + + +L+ LDLS
Sbjct: 246 NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303

Query: 304 GNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG----EL 359
            N L   +         L +L L  N++  T+     +  +L    ++ N         L
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRAL 359

Query: 360 PENISRL 366
             N++R 
Sbjct: 360 FRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (331), Expect = 4e-33
 Identities = 75/434 (17%), Positives = 150/434 (34%), Gaps = 54/434 (12%)

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
           N++        ++  +  +  +  ++       +   G   ++L+N   +      ++ +
Sbjct: 2   NVKPRQPEYKCIDSNLQYDC-VFYDVHIDMQTQDVYFGFEDITLNNQKIVT---FKNSTM 57

Query: 235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEK 293
             ++ A L+ ++ ++E L + +      I          +Q L++  N      P   + 
Sbjct: 58  R-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNT 352
           +  L  L L  N LS        N   L +L + +NNL   I  +   +  SL    +++
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSS 174

Query: 353 NQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHEL 412
           N+L       I  L   N     + N   ++         ++  +  S+NS +  +   +
Sbjct: 175 NRLTHVDLSLIPSLFHAN----VSYNLLSTLAI-----PIAVEELDASHNSIN-VVRGPV 224

Query: 413 CSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS 472
                L  L +  NN T      L N   L  V    N+                  ++ 
Sbjct: 225 NVE--LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE----------------KIM 264

Query: 473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL 532
            + FV          + L  L +  NR+   +      +  L VL L  N L   +  + 
Sbjct: 265 YHPFVK--------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 533 GKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLS 592
            +  +L NL L +N +   +   +S    L  L LS+N    +  + L  F  +    + 
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 369

Query: 593 HNDLSGEIPSNLGN 606
             D   +I   L +
Sbjct: 370 DADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 7e-31
 Identities = 65/402 (16%), Positives = 141/402 (35%), Gaps = 27/402 (6%)

Query: 21  IPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILT-CRNL 79
           I   L        + +     +     +  ++ +   +    + +  + P+ +L   R +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKF 138
             L+L+  ++   I    F     ++ L +  N  +  L P+V   +  L  L L  N  
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCT 198
           S    G   +   L  + + NN+       +     +LQ+L L  N L   +     L  
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIP 186

Query: 199 NLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS 258
           +L +  ++ N LS     +L+    + +L  S N ++  +   +      L  L++Q+N+
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE---LTILKLQHNN 237

Query: 259 FMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318
                   +     L  + L  N     +     K+  LE L +S N+L   +      +
Sbjct: 238 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN 378
             L  L L  N+L   +         L    ++ N +   L  +      L   ++  N+
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHND 350

Query: 379 FSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEE 420
           +  +          ++   +  +     ++ ++L  G   +E
Sbjct: 351 WDCN---SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 4e-30
 Identities = 67/387 (17%), Positives = 135/387 (34%), Gaps = 50/387 (12%)

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASL 345
           I S ++      ++ +               L N   +   ++ +   +P  +  S   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 346 VAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 404
              ++N  Q+  E+     +    + K  +  N     +P    +  P L  +    N  
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 405 SGELPHELCSGF-ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH 463
           S  LP  +      L  L+++ NN         +  ++L  ++   N+ T          
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---------- 178

Query: 464 PRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNE 523
                  +  +              +L +  +  N +S      L     +  L    N 
Sbjct: 179 ------HVDLSLI-----------PSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 524 LTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRF 583
           +   +   +   V+L  L L +N+LT +    + N   L  +DLS N+L   +     + 
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 584 DKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRN 643
            +L  L +S+N L   +      +  L+  LDLS N L   + +   +   LE L L  N
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 644 QLSGRIPASLSSMISLRSVDFSDNELT 670
            +   +   LS+  +L+++  S N+  
Sbjct: 329 SIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (283), Expect = 5e-27
 Identities = 66/284 (23%), Positives = 110/284 (38%), Gaps = 21/284 (7%)

Query: 392 PSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGN 450
            +   V+F N++   +LP  L   F  +E L +N                 + ++    N
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 451 QFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPAE-L 508
                    F   P L  + L  N     +    +     L+ L +  N +   I  +  
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161

Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
              T L  L L SN LT  +   L  +  LF+ N+S N L+     +++    +  LD S
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 213

Query: 569 NNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE 628
           +N +   V   +    +L  L L HN+L+    + L N   L   +DLS N L   +   
Sbjct: 214 HNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVE-VDLSYNELEKIMYHP 267

Query: 629 LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
             K+  LE L +S N+L   +      + +L+ +D S N L  +
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 3e-26
 Identities = 68/365 (18%), Positives = 132/365 (36%), Gaps = 25/365 (6%)

Query: 93  IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
           I   L  +      +++               L+N   +    +         + S   +
Sbjct: 13  IDSNLQYDC-VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL-CTNLSYLALAVNQLS 211
           +L+ L +         +      +Q L +  NA+   +PP +      L+ L L  N LS
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 212 GGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT 271
                   N  KL  L +S+N L   I  +     T L++LQ+ +N    ++     L+ 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDL--SLIP 186

Query: 272 KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNL 331
            L +  +  N       S +    ++E LD S N ++  +   +     L  L+L  NNL
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 332 SGTIPPEIGSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKF 390
             T    + +   LV  D++ N+L  ++  +   ++ +L +  +  N    ++       
Sbjct: 239 --TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 391 SPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGN 450
            P+L  +  S+N     +         LE L ++ N+   +L   L     L  +    N
Sbjct: 295 -PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 349

Query: 451 QFTGN 455
            +  N
Sbjct: 350 DWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (277), Expect = 4e-26
 Identities = 58/340 (17%), Positives = 114/340 (33%), Gaps = 46/340 (13%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
                +Q L +  N +    P    ++  +  L L  N L +     F + P        
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP-------- 141

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
                            LT L +S N L   I +  F     L+ L L+ N+    +  +
Sbjct: 142 ----------------KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLS 183

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           +  + +L    ++ N  S      +     ++ ++  +NS    +         L  L L
Sbjct: 184 L--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKL 233

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
           + N L  T    L     L  + L+ N+L   +      + +L  L +S+N L   ++  
Sbjct: 234 QHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL- 289

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
                  L+ L + +N  + ++        +L+ L+L  N+    +        +L+NL 
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLT 345

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS 341
           LS N              N+    +   +    I  ++  
Sbjct: 346 LSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (256), Expect = 2e-23
 Identities = 60/282 (21%), Positives = 105/282 (37%), Gaps = 18/282 (6%)

Query: 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
              +V     +       E  +    + +T   +       A L +   +  +  +  Q 
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPAEL-GN 510
               T AF     +  + +  N     + P  +     L+ L L+RN +S  +P  +  N
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHN 139

Query: 511 LTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNN 570
             +L  LS+ +N L             L NL LS+N LT  +   +S +  L + ++S N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 196

Query: 571 KLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELG 630
            L+      L     +  L+ SHN ++  +   +    V   +L L  N+L  T    L 
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNL--TDTAWLL 245

Query: 631 KLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
               L  ++LS N+L   +      M  L  +  S+N L  L
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 6/191 (3%)

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
             ++ +D          E   L    +++  ++ +       L    ++  LNL++  + 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNL-GNLF 608
                + +    +  L +  N +    P        L  L L  NDLS  +P  +  N  
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141

Query: 609 VLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668
            L   L +S+N+L           TSL+ L LS N+L+  +   LS + SL   + S N 
Sbjct: 142 KLTT-LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL 197

Query: 669 LTELAVTMRVT 679
           L+ LA+ + V 
Sbjct: 198 LSTLAIPIAVE 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 1/169 (0%)

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELA 563
           I + L        + +D          +   L     +   N+ +       + +  ++ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSG 623
            L+L++ ++             +  L +  N +    P    N+ +L   L L  N LS 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-LVLERNDLSS 131

Query: 624 TIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
                      L  L++S N L      +  +  SL+++  S N LT +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 10/98 (10%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 576 VPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSL 635
           +   L        +++               L   +  +   ++++       L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKI-VTFKNSTMRKLPAALLDSFRQV 71

Query: 636 EILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
           E+LNL+  Q+      + +   +++ +    N +  L 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  149 bits (378), Expect = 2e-38
 Identities = 92/483 (19%), Positives = 177/483 (36%), Gaps = 32/483 (6%)

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQI 254
            L    + L ++ N +S      + +LSKL  L +S N +   +  ++     ELE L +
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDL 76

Query: 255 QNNSFMGNIPPEIGLLTKLQYLFLYRNNF-SGPIPSEIEKLTSLENLDLSGNQLSGTIPP 313
            +N  +  I         L++L L  N F + PI  E   ++ L+ L LS   L  +   
Sbjct: 77  SHNK-LVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 314 TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFS 373
            + +L     L +          P    +       ++      +    I  +      +
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 374 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLP 433
           +  +N          K        S+  +  +    +   S   L  +    N+F   + 
Sbjct: 192 LELSNI---------KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RIL 241

Query: 434 ACLRNCS----NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRN 489
             + + +    +++ V+  G     +   +      L   ++  + F    S  +    N
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
           ++      +            ++    L   +N LT  +  + G L +L  L L  N L 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 550 --GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS---LNLSHNDLSGEIPSNL 604
              +I +  + +  L  LD+S N ++ D  +  G      S   LN+S N L+  I   L
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 605 GNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDF 664
                ++  LDL SN +  +IP+++ KL +L+ LN++ NQL          + SL+ +  
Sbjct: 420 PPR--IKV-LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

Query: 665 SDN 667
             N
Sbjct: 476 HTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  130 bits (329), Expect = 3e-32
 Identities = 86/468 (18%), Positives = 171/468 (36%), Gaps = 28/468 (5%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
            +   L++  N ++      + SL K+R L +  N ++  D S F     L +L L  N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
           L  +         NL +LDLS N    L   + F N+ +L++L L+    +      ++ 
Sbjct: 81  LV-KISCHPTV--NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 125 LSNLIDLRLATNKFSGPIPGD---IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           L+    L +    +      +     +  +L +V   N  F   +  S+  + NL+  ++
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 182 RMN---------ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
           +                        +NL+   +     S    L L   + +    +S+ 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 233 FLSGEI-SANLIGNWTELESLQIQNNSFMGNIPPEIGL---LTKLQYLFLYRNNFSGPIP 288
            L G++   +   + T L++L I          P+  +    + +       +       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIG---SMASL 345
               K++   +LD S N L+ T+     +LT L +L L  N L   +         M SL
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 346 VAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 404
              D++ N +  +  +   S    L   ++ +N  + +I   F    P +  +   +N  
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKI 433

Query: 405 SGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
              +P ++    AL+EL V  N             ++L ++    N +
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 2e-29
 Identities = 92/432 (21%), Positives = 147/432 (34%), Gaps = 22/432 (5%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
            +   L I  N        +I  L+KL+ L +  N       S  +    LE LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 307 LSGTIPPTLWNLTNLLSLQLFSNNL-SGTIPPEIGSMASLVAFDVNTNQLHGELPENISR 365
           L   I        NL  L L  N   +  I  E G+M+ L    ++T  L       I+ 
Sbjct: 81  LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 366 LVKLNKFSVFTNNFSGSIPGDFGKFSP--SLINVSFSNNSFSGELPHELCSGFALEELTV 423
           L       V    +      +  +     SL  V  +N  F   L   + +   LE   +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 424 NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD 483
                       L   + L       N    N+T          FIR+    +   +   
Sbjct: 198 KCVLEDNKCSYFLSILAKLQT-----NPKLSNLTLNNIETTWNSFIRILQLVWHTTV--- 249

Query: 484 WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNL 543
                ++SN++L              +L  L +  + S+               +   N 
Sbjct: 250 --WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 544 SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS--GEIP 601
           + +          S ++   +LD SNN LT  V +  G   +L +L L  N L    +I 
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367

Query: 602 SNLGNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
                +  LQ  LD+S NS+S    +       SL  LN+S N L+  I   L     ++
Sbjct: 368 EMTTQMKSLQQ-LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIK 424

Query: 661 SVDFSDNELTEL 672
            +D   N++  +
Sbjct: 425 VLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (292), Expect = 2e-27
 Identities = 91/423 (21%), Positives = 150/423 (35%), Gaps = 55/423 (13%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLY 61
              EL+YL +  N L   I         +++LDL  N  +  P   +F +M  L  LGL 
Sbjct: 67  FNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 62  LNELT---------LEFPSFILTCRNLTYLDLSLNKLSGLIPERL--------------- 97
              L          L     +L              L     E L               
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 98  --FTNLGKLEYLNLTENQFQGKLSPNVSKLSNLI------DLRLATNKFSGPIPGDIGSM 149
                +  LE  N+       K S  +S L+ L       +L L   + +      I  +
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 150 ---SNLQLVELFNNSFTGQIPSSLG-----QLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
              + +    + N    GQ+           LK L    +  +   +       + +N++
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
                V+       L  S +S    L  S+N L+ +      G+ TELE+L +Q N    
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLK- 361

Query: 262 NIPPEIGL---LTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWN 317
            +     +   +  LQ L + +N+ S            SL +L++S N L+ TI   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 318 LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFT 376
              +  L L SN +  +IP ++  + +L   +V +NQL   +P+ I  RL  L K  + T
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

Query: 377 NNF 379
           N +
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 2e-27
 Identities = 86/447 (19%), Positives = 163/447 (36%), Gaps = 47/447 (10%)

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327
            L  K   L + +N  S    S+I  L+ L  L +S N++             L  L L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 328 SNNLSG----------------------TIPPEIGSMASLVAFDVNTNQLHGELPENISR 365
            N L                         I  E G+M+ L    ++T  L       I+ 
Sbjct: 78  HNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 366 LVKLNKFSVFTNNFSGSIPGDFGKFSP--SLINVSFSNNSFSGELPHELCSGFALE---- 419
           L       V    +      +  +     SL  V  +N  F   L   + +   LE    
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 420 --ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGV---HPRLDFIRLSGN 474
              L  N  ++  S+ A L+    L+ +  +  + T N          H  + +  +S  
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 475 QFVGEISPDWGEC-----RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP 529
           +  G++     +      + LS  Q+  +             + + + +   +       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 530 TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS- 588
               K+    +L+ SNN LT  + ++  +LTEL  L L  N+L  ++ +      ++ S 
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 589 --LNLSHNDLSGEIPSNL-GNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQL 645
             L++S N +S +           L   L++SSN L+ TI + L     +++L+L  N++
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLS-LNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 646 SGRIPASLSSMISLRSVDFSDNELTEL 672
              IP  +  + +L+ ++ + N+L  +
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 4e-24
 Identities = 65/376 (17%), Positives = 130/376 (34%), Gaps = 27/376 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
           G++S+L++L +   +L  +    ++ L   + L + G      +      +       L+
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLH 169

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNL----------GKLEYLNLTE 111
           +   T +   FIL     T  +L L+ +  ++ +   +             KL  L L  
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 112 NQFQGKLSPNVSKL---SNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL-----FNNSFT 163
            +        + +L   + +    ++  K  G +       S   L  L      ++ F 
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSK 223
                      N+   +  ++             +   +L  + N L+  +  +  +L++
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 224 LNDLGLSDNFLSG-EISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRN 281
           L  L L  N L      A +      L+ L I  NS   +           L  L +  N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 282 NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-G 340
             +  I   +     ++ LDL  N++  +IP  +  L  L  L + SN L  ++P  I  
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 341 SMASLVAFDVNTNQLH 356
            + SL    ++TN   
Sbjct: 466 RLTSLQKIWLHTNPWD 481

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  143 bits (362), Expect = 1e-36
 Identities = 70/307 (22%), Positives = 132/307 (42%), Gaps = 8/307 (2%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           +E + L +  N +      + +S   +  L+L  N +   +   F+++ +L  LGL  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 65  LTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
           L    P  + T   NLT LD+S NK+  ++ + +F +L  L+ L + +N     +S    
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           S L++L  L L     +      +  +  L ++ L + +       S  +L  L+ L++ 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
                 T+ P      NL+ L++    L+    L++ +L  L  L LS N +S  I  ++
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

Query: 243 IGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
           +     L+ +Q+     +  + P     L  L+ L +  N  +    S    + +LE L 
Sbjct: 268 LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 302 LSGNQLS 308
           L  N L+
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (336), Expect = 3e-33
 Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 12/309 (3%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
                LDL  N++   + +  F +   LE L L EN     + P   + L NL  L L +
Sbjct: 32  TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL- 194
           N+      G    +SNL  +++  N     +      L NL+ L++  N L   I     
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 195 -GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQ 253
            GL  +L  L L    L+     +LS+L  L  L L    ++  I          L+ L+
Sbjct: 149 SGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

Query: 254 IQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP 313
           I +  ++  + P       L  L +   N +      +  L  L  L+LS N +S     
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 314 TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNK 371
            L  L  L  +QL    L+  + P     +  L   +V+ NQL   L E++   +  L  
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 372 FSVFTNNFS 380
             + +N  +
Sbjct: 325 LILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 1e-28
 Identities = 51/258 (19%), Positives = 96/258 (37%), Gaps = 4/258 (1%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +L  L+ L +  N L        + L  +  LD+  N +       F  + +L  L +  
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+L            +L  L L    L+  IP    ++L  L  L L        +    
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYS 195

Query: 123 -SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
             +L  L  L ++   +   +  +     NL  + + + + T     ++  L  L+ L+L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N ++      L     L  + L   QL+   P +   L+ L  L +S N L+  +  +
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 242 LIGNWTELESLQIQNNSF 259
           +  +   LE+L + +N  
Sbjct: 315 VFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (293), Expect = 9e-28
 Identities = 67/293 (22%), Positives = 113/293 (38%), Gaps = 8/293 (2%)

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
           ++P            +    N        E  S   LEEL +N N  +   P    N  N
Sbjct: 25  AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNRI 500
           L  +    N+        F     L  + +S N+ V  +      +  NL +L++  N +
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
                     L  L  L+L+   LT      L  L  L  L L + ++      S   L 
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQYMLDLSSN 619
            L  L++S+      +         L SL+++H +L+  +P   + +L  L++ L+LS N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRF-LNLSYN 258

Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
            +S      L +L  L+ + L   QL+   P +   +  LR ++ S N+LT L
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 3e-27
 Identities = 72/316 (22%), Positives = 117/316 (37%), Gaps = 12/316 (3%)

Query: 358 ELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
            +PE I +    L+       N   ++  D     P L  +  + N  S   P    + F
Sbjct: 25  AVPEGIPTETRLLD----LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
            L  L +  N             SNL ++    N+    +   F     L  + +  N  
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 477 VGEISPDW-GECRNLSNLQLDRNRISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTDLGK 534
           V  IS        +L  L L++  ++  IP E L +L  L VL L    +         +
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           L +L  L +S+      +  +      L  L +++  LT      +     L  LNLS+N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 595 DLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
            +S  I  + L  L  LQ  + L    L+   P     L  L +LN+S NQL+    +  
Sbjct: 259 PIS-TIEGSMLHELLRLQE-IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 654 SSMISLRSVDFSDNEL 669
            S+ +L ++    N L
Sbjct: 317 HSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (288), Expect = 4e-27
 Identities = 67/364 (18%), Positives = 127/364 (34%), Gaps = 60/364 (16%)

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASL 345
           +P  I   T    LDL  N++         +  +L  L+L  N +S  + P    ++ +L
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNL 82

Query: 346 VAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS 405
               + +N+L   +P  +                                   F+  S  
Sbjct: 83  RTLGLRSNRLK-LIPLGV-----------------------------------FTGLS-- 104

Query: 406 GELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPR 465
                       L +L ++ N     L    ++  NL  +    N       +AF     
Sbjct: 105 -----------NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 466 LDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
           L+ + L        I  +       L  L+L    I+         L RL VL +     
Sbjct: 154 LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFD 584
              +  +    + L +L++++ +LT     ++ +L  L +L+LS N ++      L    
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 585 KLLSLNLSHNDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSR 642
           +L  + L    L+  +       L  L+  L++S N L+ T+ + +   + +LE L L  
Sbjct: 273 RLQEIQLVGGQLA-VVEPYAFRGLNYLRV-LNVSGNQLT-TLEESVFHSVGNLETLILDS 329

Query: 643 NQLS 646
           N L+
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 2e-26
 Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 7/236 (2%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            LS L  L + +N +   + +    L  ++ L++G N L       FS + SL  L L  
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 63  NELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
             LT +   +       L  L L    ++  I +  F  L +L+ L ++   +   ++PN
Sbjct: 162 CNLTSIPTEAL-SHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
                NL  L +     +      +  +  L+ + L  N  +    S L +L  LQ + L
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 182 RMNALNYTIPPEL--GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235
               L   + P    GL   L  L ++ NQL+        ++  L  L L  N L+
Sbjct: 280 VGGQLA-VVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 8e-25
 Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 7/237 (2%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRN 498
           +    +    N+        F   P L+ + L+ N  V  + P  +    NL  L L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN 90

Query: 499 RISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
           R+   IP      L+ L  L +  N++   +      L  L +L + +N L     ++ S
Sbjct: 91  RLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLS 617
            L  L  L L    LT    + L     L+ L L H +++     +   L+ L+  L++S
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV-LEIS 208

Query: 618 SNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPA-SLSSMISLRSVDFSDNELTELA 673
                 T+        +L  L+++   L+  +P  ++  ++ LR ++ S N ++ + 
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE 264

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (350), Expect = 2e-36
 Identities = 62/341 (18%), Positives = 104/341 (30%), Gaps = 41/341 (12%)

Query: 49  FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
             +        +  + L     S   +  N+  LDLS N LS  I         KLE LN
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLN 64

Query: 109 LTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS 168
           L+ N      + ++  LS L  L L  N                                
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYV-----------------------------Q 93

Query: 169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLG 228
            L    +++ L    N ++  +    G       + LA N+++    L     S++  L 
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 229 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288
           L  N +     A L  +   LE L +Q N    ++  ++ +  KL+ L L  N  +  + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MG 207

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAF 348
            E +    +  + L  N+L   I   L    NL    L  N              +    
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQ 265

Query: 349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            V    +  +L         +     +       +P  F  
Sbjct: 266 TVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  136 bits (345), Expect = 1e-35
 Identities = 57/310 (18%), Positives = 113/310 (36%), Gaps = 18/310 (5%)

Query: 97  LFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156
           +  N  + +   +T++  +  L+       N+ +L L+ N  S     D+   + L+L+ 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPL 216
           L +N         L  L  L+ LDL  N +      EL +  ++  L  A N +S    +
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---V 114

Query: 217 SLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-NIPPEIGLLTKLQY 275
           S S      ++ L++N ++  +     G  + ++ L ++ N     N          L++
Sbjct: 115 SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 276 LFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTI 335
           L L  N     +  ++     L+ LDLS N+L+  + P   +   +  + L +N L   I
Sbjct: 174 LNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 336 PPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLI 395
              +    +L  FD+  N  H     +     K  +           + G   +      
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 396 NVSFSNNSFS 405
              +      
Sbjct: 288 LGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 2e-34
 Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 27  SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86
           +  + +   +  + L+    S   S  ++  L L  N L+    + +     L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 87  NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI 146
           N L   +      +L  L  L+L  N  Q      +    ++  L  A N  S  +    
Sbjct: 68  NVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSR 118

Query: 147 GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLAL 205
           G     + + L NN  T       G    +Q+LDL++N ++             L +L L
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 206 AVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 265
             N +   +       +KL  L LS N L+                           + P
Sbjct: 177 QYNFIY-DVK-GQVVFAKLKTLDLSSNKLA--------------------------FMGP 208

Query: 266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ 325
           E      + ++ L  N     I   +    +LE+ DL GN             +    +Q
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQ 265

Query: 326 LFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI-SRLVKL 369
             +      +  +     ++            +LP     RL+ L
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 1e-32
 Identities = 63/326 (19%), Positives = 114/326 (34%), Gaps = 20/326 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           + +  +   V D++L  A+     S   V+ LDL GN L     +  +    L  L L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N L  E      +   L  LDL+ N +  L           +E L+   N    ++S + 
Sbjct: 68  NVLY-ETLDL-ESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNIS-RVSCSR 118

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDL 181
                  ++ LA NK +     D G  S +Q ++L  N                L+HL+L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
           + N +   +  ++     L  L L+ N+L+  +     + + +  + L +N L   I   
Sbjct: 177 QYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
            +     LE   ++ N F              +   + +      +  + E+  ++  L 
Sbjct: 233 -LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLG 289

Query: 302 LSGNQLSGTIP-PTLWNLTNLLSLQL 326
             G      +P P    L  L     
Sbjct: 290 HYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 3e-31
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 16/254 (6%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
            +   V  ++   +L +  ++  N+  +   GN  +           +L+ + LS N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
              + D      L  L L+ N +      EL     +  L   +N ++ ++    G+   
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQ--G 121

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG-DVPQELGRFDKLLSLNLSHNDL 596
             N+ L+NN +T          + + YLDL  N++   +  +     D L  LNL +N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 597 SGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM 656
             ++   +     L+  LDLSSN L+  +  E      +  ++L  N+L   I  +L   
Sbjct: 182 Y-DVKGQV-VFAKLKT-LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 657 ISLRSVDFSDNELT 670
            +L   D   N   
Sbjct: 237 QNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (303), Expect = 4e-30
 Identities = 65/309 (21%), Positives = 113/309 (36%), Gaps = 25/309 (8%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
           I     + +  ++ ++ ++S    + S      N++ LDL  N L+     +L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG----------EISANLI-----GNW 246
            L L+ N L     L L +LS L  L L++N++              + N I        
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG-PIPSEIEKLTSLENLDLSGN 305
              +++ + NN        + G  +++QYL L  N               +LE+L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 306 QLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISR 365
            +   +         L +L L SN L+  + PE  S A +    +  N+L   + + +  
Sbjct: 180 FIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 366 LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNG 425
              L  F +  N F      DF   +  +  V+            E C+   +  L   G
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT---VPTLGHYG 292

Query: 426 NNFTGSLPA 434
                 LPA
Sbjct: 293 AYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (287), Expect = 6e-28
 Identities = 43/243 (17%), Positives = 95/243 (39%), Gaps = 15/243 (6%)

Query: 431 SLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNL 490
           ++    +N +     +   +     +         +  + LSGN      + D      L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 491 SNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG 550
             L L  N +      +L +L+ L  L L++N +      +L     +  L+ +NN+++ 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 551 EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG-EIPSNLGNLFV 609
            +  S         + L+NNK+T     + G   ++  L+L  N++          +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 610 LQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
           L++ L+L  N +   +  ++     L+ L+LS N+L+  +     S   +  +   +N+L
Sbjct: 171 LEH-LNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 670 TEL 672
             +
Sbjct: 227 VLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 2e-27
 Identities = 58/384 (15%), Positives = 118/384 (30%), Gaps = 69/384 (17%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLL 322
           I        + +   +  ++    + S  +   +++ LDLSGN LS      L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 323 SLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGS 382
            L L SN L      ++ S+++L   D+N N +     + +                   
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVG---------------- 98

Query: 383 IPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNL 442
                    PS+  +  +NN+ S  +      G   + + +  N  T          S +
Sbjct: 99  ---------PSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRV 146

Query: 443 NRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISG 502
             +    N+                   ++  +              L +L L  N I  
Sbjct: 147 QYLDLKLNEID----------------TVNFAELA-------ASSDTLEHLNLQYNFIY- 182

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
            +  ++    +L  L L SN+L   +  +      +  ++L NN L   I K++     L
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 563 AYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
            + DL  N       ++   F K   +         ++         +  +    +    
Sbjct: 240 EHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 623 GTIPQELGKLTSLEILNLSRNQLS 646
                +L    +  ++ L  +   
Sbjct: 298 -----DLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (269), Expect = 1e-25
 Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 45/307 (14%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
              ++L+ L++  N L   +     SL  +R LDL  N++      +    PS+  L   
Sbjct: 55  APFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N ++          +    + L+ NK++  + +       +++YL+L  N+        
Sbjct: 108 NNNIS-RVSCSRG--QGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID------ 157

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
                            +        S   L+ + L  N     +   +     L+ LDL
Sbjct: 158 -----------------TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDL 198

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N L   + PE      +++++L  N+L   +  +L     L    L  N        +
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
                  ++++  Q       +  +      +  L  Y          ++    +   + 
Sbjct: 257 FFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCC----EDLPAPFADRLIA 309

Query: 302 LSGNQLS 308
           L  +   
Sbjct: 310 LGHHHHH 316

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (359), Expect = 4e-36
 Identities = 69/450 (15%), Positives = 121/450 (26%), Gaps = 63/450 (14%)

Query: 27  SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86
           +  + +   +  + L+    S   S  ++  L L  N L+    + +     L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 87  NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI 146
           N L   +      +L  L  L+L  N  Q      +    ++  L  A N  S  +    
Sbjct: 68  NVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSR 118

Query: 147 GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL-GLCTNLSYLAL 205
                 + + L NN  T       G    +Q+LDL++N ++     EL      L +L L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 206 AVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 265
             N +   +       +KL  L LS N L+                           + P
Sbjct: 177 QYNFIY-DVK-GQVVFAKLKTLDLSSNKLA--------------------------FMGP 208

Query: 266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ 325
           E      + ++ L  N     I   +    +LE+ DL GN          +   N     
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQT 266

Query: 326 LFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPG 385
           +    +                                 RL+ L +      +  GS   
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET- 325

Query: 386 DFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRV 445
                                 L  E  +     E+      +   +            +
Sbjct: 326 --------------------ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQ 475
                     ++     H  LD        
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (358), Expect = 4e-36
 Identities = 64/465 (13%), Positives = 150/465 (32%), Gaps = 23/465 (4%)

Query: 213 GLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK 272
            +     N ++     ++D+ L  +  A+L  +   ++ L +  N        ++   TK
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 273 LQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332
           L+ L L  N        ++E L++L  LDL+ N +       L    ++ +L   +NN+S
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 333 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSP 392
             +    G         +  N++      +     ++    +  N        +    S 
Sbjct: 113 -RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
           +L +++   N    ++  ++     L+ L ++ N     +    ++ + +  +    N+ 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
              I KA      L+   L GN F      D+   +N     + +  +           T
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG----EIPKSISNLTELAYLDLS 568
              +    +            +L+ L     +     G     +     N      +D  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 569 NNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE 628
             +    + Q   R    ++L      L  ++ +       L   L  +   +      E
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

Query: 629 LGKLTSLEILNLSRNQLS-GRIPASLSSMISLRSVDFSDNELTEL 672
             + + L++L     +     +        ++R  D   ++ T+L
Sbjct: 405 --EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (350), Expect = 4e-35
 Identities = 69/511 (13%), Positives = 149/511 (29%), Gaps = 73/511 (14%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
           I     + +  ++ ++ ++S    + S      N++ LDL  N L+     +L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
            L L+ N L     L L +LS L  L L++N++                           
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-------------------------- 93

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL 321
               E+ +   ++ L    NN S  +          +N+ L+ N+++          + +
Sbjct: 94  ----ELLVGPSIETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 322 LSLQLFSNNLSGTIPPE-IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFS 380
             L L  N +      E   S  +L   ++  N ++ ++   +                 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV----------------- 188

Query: 381 GSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCS 440
                        L  +  S+N  +  +  E  S   +  +++  N     +   LR   
Sbjct: 189 ---------VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 441 NLNRVRFDGNQF-TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR 499
           NL      GN F  G +   F  + R+    ++          +  EC   +        
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTG----KIPTDLGKLVKLFNLNLSNNHLTGEIPKS 555
                      L  L           G    ++  +     +   ++         I + 
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLD 615
                    L+     L   V        +L            E+         LQ +  
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRA 414

Query: 616 LSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
           +        + Q+  +  ++   ++ +++ +
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (342), Expect = 5e-34
 Identities = 59/411 (14%), Positives = 114/411 (27%), Gaps = 20/411 (4%)

Query: 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL 326
                + +   +  ++    + S  +   +++ LDLSGN LS      L   T L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD 386
            SN L      ++ S+++L   D+N N +     + +     +       NN S      
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSR 118

Query: 387 FGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTG-SLPACLRNCSNLNRV 445
                    N+  +NN  +     +      ++ L +  N     +      +   L  +
Sbjct: 119 G----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIP 505
               N       +      +L  + LS N+    + P++     ++ + L  N++   I 
Sbjct: 175 NLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 506 AELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYL 565
             L     L    L  N        D           ++   +     ++    T     
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 566 DLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVL---QYMLDLSSNSLS 622
                           R   L     +     G     L         Q  +D       
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 623 GTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
             I Q   +  +   L   +  L  ++     +   L           EL 
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (341), Expect = 7e-34
 Identities = 67/393 (17%), Positives = 122/393 (31%), Gaps = 22/393 (5%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            + +  +   V D++L  A+     S   V+ LDL GN L     +  +    L  L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N L  E      +   L  LDL+ N +  L           +E L+   N    ++S +
Sbjct: 67  SNVLY-ETLDL-ESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNIS-RVSCS 117

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLD 180
                   ++ LA NK +     D G  S +Q ++L  N                L+HL+
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           L+ N +   +  ++     L  L L+ N+L+  +     + + +  + L +N L   I  
Sbjct: 176 LQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             +     LE   ++ N F      +       +   + +           E+ T     
Sbjct: 232 A-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 301 DLSGNQLSGTIPPTLWNLTNL----LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
                       P    L  L     +L     + +  +  E  + A     D    Q  
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 357 GELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
             + +   R                 +      
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 9e-18
 Identities = 52/376 (13%), Positives = 104/376 (27%), Gaps = 36/376 (9%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
            G  S +QYL +  N ++                               +S  +L HL L
Sbjct: 140 EGCRSRVQYLDLKLNEID-----------------------TVNFAELAASSDTLEHLNL 176

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             N +  +    ++    L  LDLS NKL+ + PE  F +   + +++L  N+    +  
Sbjct: 177 QYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLV-LIEK 231

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            +    NL    L  N F      D  S  N ++  +   +       +  +        
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSG----GLPLSLSNLSKLNDLGLSDNFLSG 236
                      P       L     A+    G     L     N ++  ++         
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR- 349

Query: 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTS 296
            +   +        +L+ +  +    +        +L      +      +    E+ + 
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ-QAVGQIELQHATEEQSP 408

Query: 297 LENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV-AFDVNTNQL 355
           L+ L     +             N +       +    +  E   +  L    D+     
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468

Query: 356 HGELPENISRLVKLNK 371
           +  L E + R   L  
Sbjct: 469 NATLQELVVREQNLAS 484

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  141 bits (358), Expect = 1e-35
 Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 22/331 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L+  + ++  ++ +       L S R+V  L+L    +E  D   F+   ++  L +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N +    P        LT L L  N LS  +P  +F N  KL  L+++ N  + ++  + 
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

Query: 123 -SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
               ++L +L+L++N+ +     D+  + +L    +  N  +     +L     ++ LD 
Sbjct: 167 FQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N++N  +     +   L+ L L  N L+      L N   L ++ LS N L  +I  +
Sbjct: 219 SHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYH 272

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
                  LE L I NN  +  +      +  L+ L L  N+    +     +   LENL 
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 330

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332
           L  N +  T+  +      L +L L  N+  
Sbjct: 331 LDHNSIV-TLKLS--THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (336), Expect = 8e-33
 Identities = 80/595 (13%), Positives = 173/595 (29%), Gaps = 27/595 (4%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
                 + +     +    F+  +L   + +    + +     +   S   +  L L   
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
           ++             +  L +  N +  L P  +F N+  L  L L  N     L   + 
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIF 143

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
                L  L ++ N           + ++LQ ++L +N  T  +   L  + +L H ++ 
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS 200

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N L+      L +   +  L  + N ++         L+ L    L  N L+       
Sbjct: 201 YNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLT---DTAW 249

Query: 243 IGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
           + N+  L  + +  N     I       + +L+ L++  N     +    + + +L+ LD
Sbjct: 250 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 307

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
           LS N L   +         L +L L  N++  T+     +  +L    ++ N        
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLR 363

Query: 362 NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL 421
            + R V          +       + G                   L   +      +  
Sbjct: 364 ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGR 423

Query: 422 TVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEIS 481
               +                        Q    + +      +L   ++   Q +  + 
Sbjct: 424 CSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLH 483

Query: 482 PDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF-N 540
            +     NL   +L ++ ++          T L          T    T+     K   +
Sbjct: 484 AE--IDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND 595
           L   N  L  ++    +   EL        +    +  +  R      ++  H+ 
Sbjct: 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 2e-29
 Identities = 66/354 (18%), Positives = 117/354 (33%), Gaps = 25/354 (7%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
                + I   +       E   L   + +    +       + ++    +E L+L+  Q
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 307 LSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI- 363
           +   I          +  L +  N +   +PP +  ++  L    +  N L   LP  I 
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIF 143

Query: 364 SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTV 423
               KL   S+  NN    I  D  + + SL N+  S+N  +  +   L     L    V
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANV 199

Query: 424 NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD 483
           + N  +      L     +  +    N               L  ++L  N      +  
Sbjct: 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTD--TAW 249

Query: 484 WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNL 543
                 L  + L  N +   +      + RL  L + +N L   +      +  L  L+L
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

Query: 544 SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           S+NHL   + ++      L  L L +N +   +   L     L +L LSHND  
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 1e-25
 Identities = 91/575 (15%), Positives = 185/575 (32%), Gaps = 32/575 (5%)

Query: 104 LEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163
              +++               L+N   +    +         + S   ++L+ L +    
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL-CTNLSYLALAVNQLSGGLPLSLSNLS 222
                +      +Q L +  NA+   +PP +      L+ L L  N LS        N  
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 223 KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNN 282
           KL  L +S+N L   I  +     T L++LQ+ +N    ++     L+  L +  +  N 
Sbjct: 148 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDL--SLIPSLFHANVSYNL 203

Query: 283 FSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSM 342
                 S +    ++E LD S N ++  +   +     L  L+L  NNL  T    + + 
Sbjct: 204 L-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNY 253

Query: 343 ASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN 401
             LV  D++ N+L  ++  +   ++ +L +  +  N    ++        P+L  +  S+
Sbjct: 254 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI-PTLKVLDLSH 310

Query: 402 NSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGN-ITKAF 460
           N     +         LE L ++ N+   +L   L     L  +    N +  N +   F
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 366

Query: 461 GVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLD 520
               R        +  +         C+      LDR  +       +    +       
Sbjct: 367 RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL-LQYIALTSVVEKVQRAQGRCS 425

Query: 521 SNELTGKIPTDLGKLVKLFNLNLSNN-HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE 579
           + +    + +    + +   + L  N  L  E+ +  + + +L    +   +L   +  E
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485

Query: 580 LGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEIL 638
           +   D  L       D       NL  +F             +     E   K    E L
Sbjct: 486 I---DTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDL 542

Query: 639 NLSRNQLSGRI-PASLSSMISLRSVDFSDNELTEL 672
                 L  ++           +       ++ +L
Sbjct: 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (278), Expect = 1e-25
 Identities = 94/584 (16%), Positives = 182/584 (31%), Gaps = 49/584 (8%)

Query: 102 GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS 161
           G+  Y           +  N+       D+ +           +  +++N ++V   N++
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 162 FTGQIPSSLGQLKNLQHLDLRMNALNYTIPPE-LGLCTNLSYLALAVNQLSGGLPLSLSN 220
                 + L   + ++ L+L    +   I          +  L +  N +    P    N
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 221 LSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLY 279
           +  L  L L  N LS  +   +  N  +L +L + NN+    I  +     T LQ L L 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 280 RNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI 339
            N  +  +   +  + SL + ++S N LS     TL     +  L    N+++  +    
Sbjct: 180 SNRLTH-VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG-- 228

Query: 340 GSMASLVAFDVNTNQLHGELP--ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINV 397
                L    +  N L  +     N   LV+++     + N    I          L  +
Sbjct: 229 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVD----LSYNELEKIMYHPFVKMQRLERL 283

Query: 398 SFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT 457
             SNN     L         L+ L ++ N+    +         L  +  D N      T
Sbjct: 284 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---T 338

Query: 458 KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGN------- 510
                H  L  + LS N +           RN++   +D       I  +L +       
Sbjct: 339 LKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKES 396

Query: 511 ---LTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
                   +  +    +  K+    G+      +N   +       +    L     L+ 
Sbjct: 397 DKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456

Query: 568 SNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQ 627
             N+L  +V Q     ++ +        L  EI +NL    + +  L       S  + +
Sbjct: 457 EVNELRAEVQQ---LTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL----ARSSDNLNK 509

Query: 628 ELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTE 671
               L   +   L   Q   R   + +       ++  +  L +
Sbjct: 510 VFTHLKERQAFKLRETQA--RRTEADAKQKETEDLEQENIALEK 551

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 8e-21
 Identities = 64/372 (17%), Positives = 118/372 (31%), Gaps = 19/372 (5%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            +  +L  LS+ +NNL         +   ++ L L  N L   D    S +PSL H  + 
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N L+      +     +  LD S N ++  +   +      L  L L  N      +  
Sbjct: 201 YNLLS-----TLAIPIAVEELDASHNSINV-VRGPVNVE---LTILKLQHNNLTD--TAW 249

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           +     L+++ L+ N+    +      M  L+ + + NN     +      +  L+ LDL
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N L   +         L  L L  N +     L LS    L +L LS N         
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRA 364

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
           L  N           +  +           +    +L R      + S +EK+   +   
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRC 424

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
            + + ++     + +           +  L   +      +  L    +   QL   L  
Sbjct: 425 SATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHA 484

Query: 362 NISRLVKLNKFS 373
            I   ++  +  
Sbjct: 485 EIDTNLRRYRLP 496

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 6/191 (3%)

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
             ++ +D          E   L    +++  ++ +       L    ++  LNL++  + 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNL-GNLF 608
                + +    +  L +  N +    P        L  L L  NDLS  +P  +  N  
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147

Query: 609 VLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668
            L   L +S+N+L           TSL+ L LS N+L+  +   LS + SL   + S N 
Sbjct: 148 KLTT-LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL 203

Query: 669 LTELAVTMRVT 679
           L+ LA+ + V 
Sbjct: 204 LSTLAIPIAVE 214

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL 587
           I ++L      +++++               L     +   N+ +       L  F ++ 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 588 SLNLSHNDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
            LNL+   +  EI +        +Q  L +  N++    P     +  L +L L RN LS
Sbjct: 79  LLNLNDLQIE-EIDTYAFAYAHTIQK-LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 647 GRIPASLSSMISLRSVDFSDNELTEL 672
                   +   L ++  S+N L  +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERI 162

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 42/317 (13%), Positives = 87/317 (27%), Gaps = 27/317 (8%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            +   L  + +  N L   +      ++++  L +  N L   +      +P+L  L L 
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLS 309

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N L             L  L L  N +   +          L+ L L+ N +    +  
Sbjct: 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTHHT---LKNLTLSHNDWDC--NSL 362

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIG----------SMSNLQLVELFNNSFTGQIPSSLG 171
            +   N+    +        I   +              +  L  +   S   ++  + G
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422

Query: 172 QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSD 231
           +      ++   +  +Y              L   VN+L        + + +L +  +  
Sbjct: 423 RCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR-------AEVQQLTNEQIQQ 475

Query: 232 NFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI 291
             L   + A +  N       +        N+      L + Q   L             
Sbjct: 476 EQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR--RTEAD 533

Query: 292 EKLTSLENLDLSGNQLS 308
            K    E+L+     L 
Sbjct: 534 AKQKETEDLEQENIALE 550

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  136 bits (343), Expect = 2e-33
 Identities = 81/366 (22%), Positives = 136/366 (37%), Gaps = 70/366 (19%)

Query: 294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353
                 L++  + L+ T+P  L    ++ +L +  NNL+ ++P     + +L   +V+ N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
           QL   LP     L++L+ FS    +               L  +    N  +  LP    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT-SLPVLPP 141

Query: 414 SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSG 473
               L+EL+V+ N    SLPA       L                               
Sbjct: 142 G---LQELSVSDNQLA-SLPALPSELCKLW---------------------------AYN 170

Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
           NQ    +         L  L +  N+++  +P     L +L      +N LT  +P    
Sbjct: 171 NQLT-SLPMLPS---GLQELSVSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLPALPS 221

Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH 593
            L +L    +S N LT  +P   S L EL    +S N+LT  +P        LLSL++  
Sbjct: 222 GLKEL---IVSGNRLT-SLPVLPSELKEL---MVSGNRLT-SLPMLPS---GLLSLSVYR 270

Query: 594 NDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
           N L+  +P +L +L      ++L  N LS    Q L ++TS    +    +      ++ 
Sbjct: 271 NQLT-RLPESLIHLSSETT-VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

Query: 654 SSMISL 659
               +L
Sbjct: 329 RETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (322), Expect = 7e-31
 Identities = 71/398 (17%), Positives = 133/398 (33%), Gaps = 75/398 (18%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
                L +  +  +  +P  +     +  L +  NN +  +P+   +L     L++SGNQ
Sbjct: 40  NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELR---TLEVSGNQ 92

Query: 307 LSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 366
           L+ ++P     L  L        +L             L    +  NQL   LP     L
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPGL 143

Query: 367 VKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGN 426
            +L+     ++N   S+P         L  +   NN  +  LP        L+EL+V+ N
Sbjct: 144 QELS----VSDNQLASLPALPS----ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDN 191

Query: 427 NFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGE 486
               SLP        L                               N+    +      
Sbjct: 192 QLA-SLPTLPSELYKLW---------------------------AYNNRLT-SLPA---L 219

Query: 487 CRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
              L  L +  NR++  +P     L  L    +  N LT  +P     L+ L   ++  N
Sbjct: 220 PSGLKELIVSGNRLTS-LPVLPSELKEL---MVSGNRLT-SLPMLPSGLLSL---SVYRN 271

Query: 547 HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGN 606
            LT  +P+S+ +L+    ++L  N L+ +   +  R  ++ S       +   I  ++  
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALR--EITSAPGYSGPI---IRFDMAG 324

Query: 607 LFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQ 644
               +    L   +    +P   G+    +  ++   +
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (318), Expect = 2e-30
 Identities = 71/296 (23%), Positives = 117/296 (39%), Gaps = 45/296 (15%)

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL 436
            +   ++P         +  +   +N+ +  LP        L  L V+GN  T SLP   
Sbjct: 49  ESGLTTLPDCLPA---HITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT-SLPVLP 100

Query: 437 RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLD 496
                L+             +        L  + + GNQ    +         L  L + 
Sbjct: 101 PGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL-TSLPV---LPPGLQELSVS 149

Query: 497 RNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI 556
            N+++  +PA    L +L      +N+LT  +P     L +L   ++S+N L   +P   
Sbjct: 150 DNQLAS-LPALPSELCKL---WAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPTLP 200

Query: 557 SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDL 616
           S L +L      NN+LT  +P        L  L +S N L+  +P     L  L     +
Sbjct: 201 SELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELKEL----MV 248

Query: 617 SSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           S N L+ ++P     L SL   ++ RNQL+ R+P SL  + S  +V+   N L+E 
Sbjct: 249 SGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (315), Expect = 5e-30
 Identities = 71/371 (19%), Positives = 126/371 (33%), Gaps = 49/371 (13%)

Query: 76  CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135
                 L++  + L+ L P+ L  +   +  L + +N     L         L  L ++ 
Sbjct: 39  NNGNAVLNVGESGLTTL-PDCLPAH---ITTLVIPDNNLT-SLPAL---PPELRTLEVSG 90

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
           N+ +  +P     +  L +                     L  L +  N L  ++P    
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPP 141

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ 255
               L  L+++ NQL+  LP   S L KL      +N L+     +L    + L+ L + 
Sbjct: 142 ---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-----SLPMLPSGLQELSVS 189

Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL 315
           +N    ++P     L KL       NN    +P+     + L+ L +SGN+L+ ++P   
Sbjct: 190 DNQLA-SLPTLPSELYKLWAY----NNRLTSLPALP---SGLKELIVSGNRLT-SLPVL- 239

Query: 316 WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVF 375
              + L  L +  N L+ ++P     + SL    V  NQL   LPE++  L      ++ 
Sbjct: 240 --PSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 376 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPAC 435
            N  S        +   S    S     F            AL       +    +    
Sbjct: 293 GNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA--AADWLVPAREGE 349

Query: 436 LRNCSNLNRVR 446
                  +   
Sbjct: 350 PAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 1e-28
 Identities = 69/340 (20%), Positives = 123/340 (36%), Gaps = 48/340 (14%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLYL 62
            + +  L + DNNL  ++P     LR    L++ GN L + P       +  L+     L
Sbjct: 60  PAHITTLVIPDNNLT-SLPALPPELRT---LEVSGNQLTSLPV--LPPGLLELSIFSNPL 113

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
             L    PS       L  L +  N+L+ L           L+ L++++NQ    L    
Sbjct: 114 THLP-ALPS------GLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLA-SLPAL- 159

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
              S L  L    N+ +  +P     +  L    + +N     +P+   +L  L   + R
Sbjct: 160 --PSELCKLWAYNNQLTS-LPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKLWAYNNR 212

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
           + +L     P L   + L  L ++ N+L+  LP+  S L +L    +S N L+  +    
Sbjct: 213 LTSL-----PAL--PSGLKELIVSGNRLTS-LPVLPSELKELM---VSGNRLT-SLPMLP 260

Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD- 301
               + L SL +  N     +P  +  L+    + L  N  S      + ++TS      
Sbjct: 261 ----SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSG 315

Query: 302 --LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI 339
             +  +    + P     L    +  L         P + 
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 1e-28
 Identities = 86/461 (18%), Positives = 151/461 (32%), Gaps = 100/461 (21%)

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ 255
           L    + L +  + L+  LP  L   + +  L + DN L+  + A       EL +L++ 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALP----PELRTLEVS 89

Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL 315
            N    ++P     L +L        +            + L  L + GNQL+ ++P   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPV-- 138

Query: 316 WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVF 375
                L  L +  N L+ ++P     +  L       NQL   LP   S L +L+     
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQELS----V 188

Query: 376 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPAC 435
           ++N   S+P         L  +   NN  +  LP        L+EL V+GN  T SLP  
Sbjct: 189 SDNQLASLPTLPS----ELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPV- 238

Query: 436 LRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495
                                                                 L  L +
Sbjct: 239 --------------------------------------------------LPSELKELMV 248

Query: 496 DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS 555
             NR++  +P     L     LS+  N+LT ++P  L  L     +NL  N L+    ++
Sbjct: 249 SGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLD 615
           +  +T        +  +            +  +L+L+  D    +P+  G          
Sbjct: 304 LREITS---APGYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEPAPADRWHM 358

Query: 616 LSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM 656
                 +      L +L+  E   +       +I + L+ +
Sbjct: 359 FGQEDNADAFSLFLDRLSETEN-FIKDAGFKAQISSWLAQL 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 31/256 (12%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLYL 62
              LQ LSV DN L  ++P   S L K   L    N L + P          L  L +  
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSELCK---LWAYNNQLTSLPM-----LPSGLQELSVSD 190

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+L    P+       L   +  L  L  L           L+ L ++ N+    L    
Sbjct: 191 NQLA-SLPTLPSELYKLWAYNNRLTSLPALP--------SGLKELIVSGNRLTS-LPVL- 239

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
              S L +L ++ N+ +  +P        L  + ++ N  T ++P SL  L +   ++L 
Sbjct: 240 --PSELKELMVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N L+     +      ++        +        S   +   L L+            
Sbjct: 293 GNPLS-ERTLQ--ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 243 IGNWTELESLQIQNNS 258
                       ++N+
Sbjct: 350 PAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 16/178 (8%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
             SEL  L  Y+N L  ++P   S L++   L + GN L +           L  L +  
Sbjct: 199 LPSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLTSLP----VLPSELKELMVSG 250

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N LT   P        L  L +  N+L+ L       +L     +NL  N    +    +
Sbjct: 251 NRLT-SLPMLP---SGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPLSERTLQAL 304

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            ++++         +F             L L     +                    
Sbjct: 305 REITSAPGYSGPIIRFDMAGASAPRETRALHL--AAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 30/210 (14%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
            S L  LSVY N L   +P  L  L     ++L GN L          +  +T    Y  
Sbjct: 260 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA---LREITSAPGYSG 315

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN----------- 112
            +     +     R    L L+         E       +       +N           
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

Query: 113 ----------QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIG-----SMSNLQLVEL 157
                      F+ ++S  +++L+    LR  T   +              +  ++ V+L
Sbjct: 376 SETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQMKNVQL 435

Query: 158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
            +N+  GQ  + L  L        R+  L 
Sbjct: 436 VHNAEKGQYDNDLAALVATGREMFRLGKLE 465

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (334), Expect = 4e-33
 Identities = 69/360 (19%), Positives = 128/360 (35%), Gaps = 35/360 (9%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQL-SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            L +LQ+L V        I       L  +  L L  N     +   F+ + +L  L L 
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 62  LNELTLEF-PSFILTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ---- 115
              L              +L  L L  N +  + P   F N+ +   L+LT N+ +    
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

Query: 116 ------GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSS 169
                       + +LS++    +          G+    +++  ++L  N F   +   
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 170 LGQLKNLQHLDLRMNALNYTIPPELGL---------------CTNLSYLALAVNQLSGGL 214
                    +   + + +Y +    G                 + +    L+ +++   L
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKL 273
               S+ + L  L L+ N ++ +I  N     T L  L +  N F+G+I   +   L KL
Sbjct: 292 KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKL 349

Query: 274 QYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSNNL 331
           + L L  N+    +  +    L +L+ L L  NQL  ++P      LT+L  + L +N  
Sbjct: 350 EVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  128 bits (323), Expect = 1e-31
 Identities = 91/455 (20%), Positives = 154/455 (33%), Gaps = 84/455 (18%)

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
            +++Y+ L++N ++     S S L  L  L +        I  N     + L  L++  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 258 SFMGNIPPEI-GLLTKLQYLFLYRNNF-SGPIPSEI-EKLTSLENLDLSGNQLSGTIPPT 314
            F   +       L  L+ L L + N     +     + LTSLE L L  N +    P +
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 315 LW-NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFS 373
            + N+     L L  N +  +I  E               +    L     RL  +    
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEED--------LLNFQGKHFTLL-----RLSSITLQD 194

Query: 374 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLP 433
           +          G+  K +                         ++  L ++GN F  S+ 
Sbjct: 195 MNEYWLGWEKCGNPFKNT-------------------------SITTLDLSGNGFKESMA 229

Query: 434 ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNL 493
               +     +++      + N+  +F      +F       F G       E   +   
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSF---GHTNFKDPDNFTFKGL------EASGVKTC 280

Query: 494 QLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLFNLNLSNNHLTGEI 552
            L +++I   + +   + T L  L+L  NE+  KI  +    L  L  LNLS N L   I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SI 338

Query: 553 PKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQ 611
              +  NL +L  LDLS N +   +  +   F  L +L                      
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRA-LGDQS--FLGLPNLKE-------------------- 375

Query: 612 YMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQL 645
             L L +N L  ++P     +LTSL+ + L  N  
Sbjct: 376 --LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (321), Expect = 2e-31
 Identities = 84/381 (22%), Positives = 136/381 (35%), Gaps = 37/381 (9%)

Query: 31  VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILT-CRNLTYLDLSLNKL 89
           V Y+DL  N +   + + FS +  L  L +      L   +       +L  L L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 90  SGLIPERLFTNLGKLEYLNLTENQFQG-KLSPNV-SKLSNLIDLRLATNKFSGPIPGDI- 146
             L     F  L  LE L LT+    G  LS N    L++L  L L  N      P    
Sbjct: 92  LQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 147 GSMSNLQLVELFNNSFTGQIPSSLGQL--KNLQHLDLRMNALNYTIPPELGL-------- 196
            +M    +++L  N         L     K+   L L    L       LG         
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 197 CTNLSYLALAVNQLSGGLP---LSLSNLSKLNDLGLSDNFLSGE-ISANLIGN------- 245
            T+++ L L+ N     +          +K+  L LS+++  G         +       
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 246 ---WTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENL 300
               + +++  +  +     +   +    T L+ L L +N  +  I       LT L  L
Sbjct: 271 GLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGEL 359
           +LS N L         NL  L  L L  N++   +  +    + +L    ++TNQL   +
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SV 386

Query: 360 PENI-SRLVKLNKFSVFTNNF 379
           P+ I  RL  L K  + TN +
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (305), Expect = 2e-29
 Identities = 84/432 (19%), Positives = 138/432 (31%), Gaps = 67/432 (15%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAV 207
           +++  V+L  NS      +S  +L++LQ L +        I      GL ++L  L L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDY 88

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI 267
           NQ       + + L+ L  L L+                  L+   +  N F        
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQC---------------NLDGAVLSGNFFKP------ 127

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWNLT--NLLSL 324
             LT L+ L L  NN     P+     +     LDL+ N++       L N    +   L
Sbjct: 128 --LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 325 QLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP 384
           +L S  L                 D+N   L  E   N  +   +    +  N F  S+ 
Sbjct: 186 RLSSITLQ----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 385 GDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRN---CSN 441
                         F +     ++   + S       +    NF              S 
Sbjct: 230 K------------RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK-DPDNFTFKGLEASG 276

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRI 500
           +       ++    +   F     L+ + L+ N+   +I  + +    +L  L L +N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL 335

Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKSI-SN 558
                    NL +L VL L  N +   +       L  L  L L  N L   +P  I   
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 559 LTELAYLDLSNN 570
           LT L  + L  N
Sbjct: 394 LTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 1e-26
 Identities = 81/405 (20%), Positives = 135/405 (33%), Gaps = 33/405 (8%)

Query: 269 LLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLF 327
           L   + Y+ L  N+ +    +   +L  L+ L +        I   T   L++L+ L+L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 328 SNNLSGTIPPEI-GSMASLVAFDVNTNQLHG-ELPENI-SRLVKLNKFSVFTNNFSGSIP 384
            N     +       +A+L    +    L G  L  N    L  L    +  NN     P
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 385 GDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNR 444
             F         +  + N     +  E    F  +  T+            LR  S    
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTL------------LRLSSI-TL 192

Query: 445 VRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGI 504
              +              +  +  + LSGN F  + S        ++  ++    +S   
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF--KESMAKRFFDAIAGTKIQSLILS-NS 249

Query: 505 PAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELA 563
                +         D+    G   + +         +LS + +   + KS+ S+ T+L 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKT------CDLSKSKIF-ALLKSVFSHFTDLE 302

Query: 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNL-GNLFVLQYMLDLSSNSLS 622
            L L+ N++             LL LNLS N L   I S +  NL  L+  LDLS N + 
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEV-LDLSYNHIR 360

Query: 623 GTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
               Q    L +L+ L L  NQL          + SL+ +    N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 4e-25
 Identities = 81/386 (20%), Positives = 159/386 (41%), Gaps = 44/386 (11%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATN 136
           ++ Y+DLSLN ++ L  E  F+ L  L++L + +      +  N    LS+LI L+L  N
Sbjct: 31  HVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQI--PSSLGQLKNLQHLDLRMNALNYTIPPEL 194
           +F     G    ++NL+++ L   +  G +   +    L +L+ L LR N +    P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 195 --GLCTNLSYLALAVNQLS----------GGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
              +      L L  N++            G   +L  LS +    +++ +L  E   N 
Sbjct: 150 FLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 243 IGNWTELESLQIQNNSFMGNIPPEI---GLLTKLQYLFLY----------RNNFSGPIPS 289
             N T + +L +  N F  ++          TK+Q L L             NF  P   
Sbjct: 209 FKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 290 EIEKL--TSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEI-GSMASL 345
             + L  + ++  DLS +++   +  +++ + T+L  L L  N ++  I       +  L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 346 VAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNS 403
           +  +++ N L G +   +   L KL    +  N+   ++    F    P+L  ++   N 
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGL-PNLKELALDTNQ 382

Query: 404 FSGELPHELCSGF-ALEELTVNGNNF 428
               +P  +     +L+++ ++ N +
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 52/255 (20%), Positives = 83/255 (32%), Gaps = 26/255 (10%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ---LD 496
           +++N V    N        +F     L F+++        I       R LS+L    LD
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSLIILKLD 87

Query: 497 RNRISGGIPAE-LGNLTRLGVLSLDSNELTG-KIPTDL-GKLVKLFNLNLSNNHLTGEIP 553
            N+    +       L  L VL+L    L G  +  +    L  L  L L +N++    P
Sbjct: 88  YNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 554 KSI-SNLTELAYLDLSNNKLTGDVPQELGRFDK--LLSLNLSHNDL--------SGEIPS 602
            S   N+     LDL+ NK+     ++L  F       L LS   L          E   
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 603 NLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLE-----ILNLSRNQLSGRIPASLSSMI 657
           N      +   LDLS N    ++ +      +       IL+ S N  S     +     
Sbjct: 207 NPFKNTSITT-LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 658 SLRSVDFSDNELTEL 672
           +        + +   
Sbjct: 266 NFTFKGLEASGVKTC 280

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.1 bits (151), Expect = 4e-10
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
            ++L+ L++  N +N         L  +  L+L  NFL + D   F ++  L  L L  N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

Query: 64  ELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
            +             NL  L L  N+L   +P+ +F  L  L+ + L  N + 
Sbjct: 358 HIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 408

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (310), Expect = 7e-31
 Identities = 80/333 (24%), Positives = 134/333 (40%), Gaps = 44/333 (13%)

Query: 6   ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNEL 65
            L+ +   D  L   +P  L        LDL  N +       F ++ +L  L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 66  TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SK 124
           +   P        L  L LS N+L   +PE++      L+ L + EN+   K+  +V + 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT---LQELRVHENEIT-KVRKSVFNG 143

Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
           L+ +I + L TN               L+   + N +F G        +K L ++ +   
Sbjct: 144 LNQMIVVELGTNP--------------LKSSGIENGAFQG--------MKKLSYIRIADT 181

Query: 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG 244
            +  TIP   GL  +L+ L L  N+++     SL  L+ L  LGLS N +S  +    + 
Sbjct: 182 NIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLA 237

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG------PIPSEIEKLTSLE 298
           N   L  L + NN  +  +P  +     +Q ++L+ NN S         P    K  S  
Sbjct: 238 NTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 299 NLDLSGNQLSGT-IPP-TLWNLTNLLSLQLFSN 329
            + L  N +    I P T   +    ++QL + 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 5e-25
 Identities = 54/263 (20%), Positives = 99/263 (37%), Gaps = 17/263 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L  L  L + +N ++   P   + L K+  L L  N L+           +L  L ++ N
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHEN 131

Query: 64  ELTLEFPSFILT-CRNLTYLDLSLNKL-SGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
           E+T +    +      +  ++L  N L S  I    F  + KL Y+ + +      +   
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           +    +L +L L  NK +      +  ++NL  + L  NS +     SL    +L+ L L
Sbjct: 190 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSG------GLPLSLSNLSKLNDLGLSDNFLS 235
             N L   +P  L     +  + L  N +S         P   +  +  + + L  N + 
Sbjct: 248 NNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 236 -GEISANLIGNWTELESLQIQNN 257
             EI  +         ++Q+ N 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 2e-24
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 16/241 (6%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRN 498
            +   +    N+ T      F     L  + L  N+   +ISP  +     L  L L +N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 499 RISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLFNLNLSNNHLTGEI--PKS 555
           ++   +P ++     L  L +  NE+T K+       L ++  + L  N L        +
Sbjct: 111 QLKE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQYML 614
              + +L+Y+ +++  +T  +PQ L     L  L+L  N ++ ++ +  L  L  L   L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAK-L 221

Query: 615 DLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAV 674
            LS NS+S      L     L  L+L+ N+L  ++P  L+    ++ V   +N ++ +  
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 675 T 675
            
Sbjct: 281 N 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 3e-24
 Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 20/267 (7%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
              L +  N  T       +N  NL+ +    N+ +     AF    +L+ + LS NQ  
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT-GKIPTD-LGKL 535
            E+       + L  L++  N I+    +    L ++ V+ L +N L    I       +
Sbjct: 114 -ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 536 VKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
            KL  + +++ ++T  IP+ +  +LTEL    L  NK+T      L   + L  L LS N
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 595 DLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG------ 647
            +S  + +  L N   L+  L L++N L   +P  L     ++++ L  N +S       
Sbjct: 227 SIS-AVDNGSLANTPHLRE-LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 648 RIPASLSSMISLRSVDFSDNELTELAV 674
             P   +   S   V    N +    +
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEI 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 10/232 (4%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
            +   L L  NK +    GD  ++ NL  + L NN  +   P +   L  L+ L L  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL-SGEISANLIG 244
           L   +P    +   L  L +  N+++       + L+++  + L  N L S  I      
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLS 303
              +L  ++I + +    IP   GL   L  L L  N  +  + +   + L +L  L LS
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLS 224

Query: 304 GNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355
            N +S     +L N  +L  L L +N L   +P  +     +    ++ N +
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 62/313 (19%), Positives = 108/313 (34%), Gaps = 40/313 (12%)

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327
            L      L L  N  +     + + L +L  L L  N++S   P     L  L  L L 
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 328 SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDF 387
            N L   +P       +L    V+ N++        + L ++    + TN          
Sbjct: 109 KNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP--------- 156

Query: 388 GKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF 447
                 L +    N +F G +         L  + +   N T ++P  L    +L  +  
Sbjct: 157 ------LKSSGIENGAFQG-MK-------KLSYIRIADTNIT-TIPQGL--PPSLTELHL 199

Query: 448 DGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPA 506
           DGN+ T     +      L  + LS N  +  +         +L  L L+ N++   +P 
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 507 ELGNLTRLGVLSLDSNELTG------KIPTDLGKLVKLFNLNLSNNHLT-GEIPKSI-SN 558
            L +   + V+ L +N ++         P    K      ++L +N +   EI  S    
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 559 LTELAYLDLSNNK 571
           +   A + L N K
Sbjct: 318 VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 66/279 (23%), Positives = 99/279 (35%), Gaps = 23/279 (8%)

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL 436
           N  +    GDF     +L  +   NN  S   P        LE L ++ N     LP  +
Sbjct: 62  NKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

Query: 437 RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF-VGEISPDW-GECRNLSNLQ 494
                L  +R   N+ T      F    ++  + L  N      I        + LS ++
Sbjct: 120 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 495 LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLFNLNLSNNHLTGEIP 553
           +    I+  IP  L     L  L LD N++T K+    L  L  L  L LS N ++    
Sbjct: 178 IADTNITT-IPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 554 KSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-------LGN 606
            S++N   L  L L+NNKL   VP  L     +  + L +N++S  I SN          
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTK 291

Query: 607 LFVLQYMLDLSSNSLSGT-IPQEL-GKLTSLEILNLSRN 643
                  + L SN +    I       +     + L   
Sbjct: 292 KASYSG-VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 19/219 (8%)

Query: 461 GVHPRLDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL 519
            + P    + L  N+   EI        +NL  L L  N+IS   P     L +L  L L
Sbjct: 49  DLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 520 DSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQ 578
             N+L  ++P  +     L  L +  N +T ++ KS+ + L ++  ++L  N L      
Sbjct: 108 SKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-SSGI 162

Query: 579 ELGRFD---KLLSLNLSHNDLSGEIPSNL-GNLFVLQYMLDLSSNSLSGTIPQE-LGKLT 633
           E G F    KL  + ++  +++  IP  L  +L      L L  N ++  +    L  L 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL----TELHLDGNKIT-KVDAASLKGLN 216

Query: 634 SLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           +L  L LS N +S     SL++   LR +  ++N+L ++
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 486 ECR-NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLS 544
            C+ +L  +Q     +   +P +L   T   +L L +N++T     D   L  L  L L 
Sbjct: 28  RCQCHLRVVQCSDLGLEK-VPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILI 84

Query: 545 NNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNL 604
           NN ++   P + + L +L  L LS N+L  ++P+++     L  L +  N+++    S  
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVF 141

Query: 605 GNLFVLQYMLDLSSNSL-SGTIPQE-LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSV 662
             L  +   ++L +N L S  I       +  L  + ++   ++  IP  L    SL  +
Sbjct: 142 NGLNQMIV-VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTEL 197

Query: 663 DFSDNELTEL 672
               N++T++
Sbjct: 198 HLDGNKITKV 207

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 15/167 (8%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            + +L Y+ + D N+   IP  L     +  L L GN +   D +    + +L  LGL  
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N ++      +    +L  L L+ NKL  +       +   ++ + L  N     +  N 
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNIS-AIGSND 282

Query: 123 -------SKLSNLIDLRLATNKFS-GPIPGDI-GSMSNLQLVELFNN 160
                  +K ++   + L +N      I       +     V+L N 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET------PDWSKFSSMPSLT 56
           +   L+ L + +N L   +P  L+  + ++ + L  N +              +   S +
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 57  HLGLYLNELTL-EFPSFILTC-RNLTYLDLSLNK 88
            + L+ N +   E       C      + L   K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  121 bits (306), Expect = 5e-29
 Identities = 83/470 (17%), Positives = 169/470 (35%), Gaps = 34/470 (7%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
              + LS+  N+++      +S L ++R L L  N + + D+  F     L +L +  N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
           L        +   +L +LDLS N    L   + F NL KL +L L+  +F+     ++  
Sbjct: 112 LQ-NISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLP 165

Query: 125 LSNLIDLRLATNKFSGPIPG------DIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
           +++L    +  +  S  I G       I + + L LV   N+ F+ Q+  S+  L +LQ 
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 179 LDLRMNALNYTIPPEL--GLCTNLSYLALAVNQLSGGLP-----LSLSNLSKLNDLGLSD 231
            ++++N  N          L    + L + +  +                  +  L + +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 232 NFLSGEISANLIGNWT----ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPI 287
             ++  I              L    ++N  F+ +      +  ++    L  ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 288 PSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVA 347
                  +S   L+ + N  + ++      L  L +L L  N L            ++ +
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 348 FDVNTNQL----HGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS 403
            +     L            +    +   ++ +N  +GS+   F    P +  +   NN 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNR 461

Query: 404 FSGELPHELCSGFALEELTVNGNNFTGSLP-ACLRNCSNLNRVRFDGNQF 452
               +P ++    AL+EL V  N    S+P       ++L  +    N +
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  121 bits (305), Expect = 6e-29
 Identities = 91/495 (18%), Positives = 167/495 (33%), Gaps = 58/495 (11%)

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQI 254
            L      L+L+ N +S      +S LS+L  L LS N +   +  ++     +LE L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 255 QNNSFMGNIPPEIGLLTKLQYLFLYRNNF-SGPIPSEIEKLTSLENLDLSGNQLSGTIPP 313
            +N    NI      +  L++L L  N+F   P+  E   LT L  L LS  +    +  
Sbjct: 108 SHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDL 163

Query: 314 TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFS 373
               + +L    +  + +S  I         +    V     H     ++   + +N   
Sbjct: 164 L--PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 374 VFTNNFSGSIPGDFGKFS---------PSLINVSFSNNSFSGELPHELCSGF---ALEEL 421
               +       +  +           P+L+NV+  +   + +   +L   F    +E L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 422 TVNGNNFTG-----SLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
            +     T                +L         F  +    + V   ++   LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV 536
                       + + L   +N  +  +      L RL  L L  N L            
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 537 KLFNLNLSNNHLT----GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLS 592
            + +L   +  L         ++ +    +  L+LS+N LTG V      F  L      
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV------FRCL------ 448

Query: 593 HNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPAS 652
                   P  +        +LDL +N +  +IP+++  L +L+ LN++ NQL       
Sbjct: 449 --------PPKV-------KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 653 LSSMISLRSVDFSDN 667
              + SL+ +   DN
Sbjct: 493 FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (262), Expect = 1e-23
 Identities = 73/415 (17%), Positives = 132/415 (31%), Gaps = 36/415 (8%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFS 328
           L++L+ L L  N     +   +      LE LD+S N+L   I      + +L  L L  
Sbjct: 75  LSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSF 130

Query: 329 NNL-SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF-SGSIPGD 386
           N+     +  E G++  L    ++  +        ++ L          +    G     
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190

Query: 387 FGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVR 446
               + +++++ F  NS          S  AL  L ++           L    +     
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQ--VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 447 FDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWG---ECRNLSNLQLDRNRISGG 503
                 T            L  I  +    V      W    E  N+ NL +        
Sbjct: 249 PTLLNVT------------LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELA 563
                  L  L +  + +               ++    LS +           + +   
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS-----GEIPSNLGNLFVLQYMLDLSS 618
           +L+ + N  T  V Q      +L +L L  N L        +  N+ +L      LD+S 
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL----ETLDVSL 412

Query: 619 NSL-SGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           NSL S    +      S+ +LNLS N L+G +   L     ++ +D  +N +  +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =   99 bits (249), Expect = 5e-22
 Identities = 70/401 (17%), Positives = 125/401 (31%), Gaps = 72/401 (17%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLYL 62
             +L+YL V  N L   I      +  +R+LDL  N  +  P   +F ++  LT LGL  
Sbjct: 99  NQDLEYLDVSHNRL-QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 63  NELT--------------------------LEFPSFILTCRNLTYLDLSLNKLSGLIPER 96
            +                             E  S  +    + +L    N L  +    
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 97  LFTNLGKLEYLNLTENQFQGKLSPNVS-------------------------------KL 125
               LG L+  N+  N    +                                       
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF-----NNSFTGQIPSSLGQLKNLQHLD 180
             +  L +     +  I  +  + S   L  L      N  F     +       +    
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL-SGEIS 239
           L ++   +         ++ ++L    N  +  +    S L +L  L L  N L +    
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 240 ANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298
           A +  N + LE+L +  NS   +           +  L L  N  +G +   +     ++
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVK 453

Query: 299 NLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI 339
            LDL  N++  +IP  + +L  L  L + SN L  ++P  +
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 14/238 (5%)

Query: 4   LSELQYLSVYDNNLNGAIPF-----QLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL 58
              ++YL++Y+  +   I         ++L+ +    +          + +S    +   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 59  GLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKL 118
            L +++          +  + T+L+ + N  +     +  + L +L+ L L  N  +   
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 119 SPNVSKLSNLIDLRLATNKF----SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLK 174
                   N+  L           S           ++ ++ L +N  TG +   L    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-- 450

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
            ++ LDL  N +  +IP ++     L  L +A NQL          L+ L  + L DN
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 2   GDLSELQYLSVYDNNLN----GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTH 57
                +  L   D +LN     A     +    +  L+L  N L    +      P +  
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454

Query: 58  LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
           L L+ N +    P  +   + L  L+++ N+L   +P+ +F  L  L+Y+ L +N + 
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 56/296 (18%), Positives = 106/296 (35%), Gaps = 42/296 (14%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
            + L+++ N+ +      +   S L  +R   N+        F  +  L+++ +S N+  
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 478 GEISPDWGECRNLSNLQLDRNRI-SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKL- 535
             IS       +L +L L  N      +  E GNLT+L  L L + +        +  L 
Sbjct: 114 -NISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 536 VKLFNLNLSNNHLTGEIPKSISNL-----------------------TELAYLDLSNNKL 572
           +    L+L + H+ G   +S+                            L +L LSN KL
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 573 TG-------DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYM--LDLSSNSLSG 623
                        EL R   LL++ L H + + +    L   F  + +  L++ + +++ 
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 624 TIPQELG-----KLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAV 674
            I +E        L SL I ++          A  S    +     S ++   + +
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (294), Expect = 6e-28
 Identities = 83/405 (20%), Positives = 151/405 (37%), Gaps = 47/405 (11%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             L+ L  L    NN+       LS    + YL    N L   D    + +  LT+L   
Sbjct: 61  EKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N+LT      +     LTYL+ + N L+ +      ++  +L  L+   N+       +
Sbjct: 115 TNKLT---KLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKK--ITKLD 165

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           V+  + L  L  + NK +     D+     L  +    N+ T ++   L Q   L  LD 
Sbjct: 166 VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDC 219

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
             N L   I   +   T L+Y   +VN L+    L +S LSKL  L         ++   
Sbjct: 220 SSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQT----DLLEI 269

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
            + + T+L   Q +    +  +  ++   T+L  L       +     ++ +   L  L 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLY 324

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
           L+  +L+  +  +  + T L SL   + ++       +G + +L        Q      E
Sbjct: 325 LNNTELT-ELDVS--HNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKE 379

Query: 362 NIS-----RLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN 401
            ++       V  +    F N  +   PGD G +  +   +++ N
Sbjct: 380 TLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQATNTITWEN 423

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (273), Expect = 3e-25
 Identities = 74/449 (16%), Positives = 142/449 (31%), Gaps = 67/449 (14%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
            N                 S  QL  L  LD   +++  T    +   T L+ L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNN 75

Query: 210 LSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL 269
           ++    L LS  + L  L    N L+  +    +   T+L  L    N        ++  
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKL---TKLDVSQ 125

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
              L YL   RN  +     ++   T L  LD   N+        +   T L +L    N
Sbjct: 126 NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFN 180

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            ++     ++     L   + +TN +  +L   +++ ++L      +N  +         
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT--------- 225

Query: 390 FSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG 449
                  +  +  +              L     + N  T  L       S L  +    
Sbjct: 226 ------EIDVTPLT-------------QLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQ 263

Query: 450 NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELG 509
                        + +L + +  G + + E+  D      L  L      I+     +L 
Sbjct: 264 TDLL---EIDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLS 315

Query: 510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN 569
              +L  L L++ ELT ++  D+    KL +L+  N H+  +   S+  +  L     + 
Sbjct: 316 QNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAE 370

Query: 570 NKLTGDVPQELGRFDKLLSLNLSHNDLSG 598
            +      + L      ++++    D  G
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (266), Expect = 2e-24
 Identities = 70/374 (18%), Positives = 122/374 (32%), Gaps = 41/374 (10%)

Query: 7   LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT 66
                     +          L  +  LD   + +          +  LT L    N +T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT 77

Query: 67  LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
                 +    NLTYL    NKL+ L      T L KL YLN   N+       +VS+  
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
            L  L  A N  +     D+   + L  ++   N    ++   +     L  LD   N +
Sbjct: 128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW 246
                 ++     L+ L    N ++    L L+   +L  L  S N    +++   +   
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSN----KLTEIDVTPL 232

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
           T+L       N     +   +  L+KL  L   + +       ++   T L      G +
Sbjct: 233 TQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 307 LSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 366
               +   + + T L  L   +  ++  +   +     LV   +N  +L  EL   +S  
Sbjct: 287 KIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHN 338

Query: 367 VKLNKFSVFTNNFS 380
            KL   S    +  
Sbjct: 339 TKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 3e-23
 Identities = 76/387 (19%), Positives = 130/387 (33%), Gaps = 38/387 (9%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L++L YL+   N L      Q   L    YL+   N L   D    S    LT L  
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDVSQNPLLT---YLNCARNTLTEID---VSHNTQLTELDC 155

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           +LN+   +    +     LT LD S NK++ L      +    L  LN   N        
Sbjct: 156 HLNKKITKLD--VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNIT---KL 206

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           ++++   L  L  ++NK +     D+  ++ L   +   N  T ++  S   L  L  L 
Sbjct: 207 DLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLH 260

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
                L      E+ L  N   +            L +++ ++L  L      ++ E+  
Sbjct: 261 CIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD- 313

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             +    +L  L + N      +   +   TKL+ L     +      S + K+ +L N 
Sbjct: 314 --LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNN 366

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSG---TIPPEIGSMASLVAFDVNTNQLHG 357
             +  Q       TL N +  +++     +  G    I P  G +       +    L  
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLST 426

Query: 358 ELPENISRLVKLNKFSVFTNNFSGSIP 384
           + P         N   V T       P
Sbjct: 427 DNPAVTYTFTSENGAIVGTVTTPFEAP 453

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 3e-23
 Identities = 73/431 (16%), Positives = 138/431 (32%), Gaps = 71/431 (16%)

Query: 23  FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82
           F   +              +T        + +LT L  + + +T    + I     LT L
Sbjct: 15  FPDDNFASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKL 69

Query: 83  DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPI 142
             + N ++ L      +    L YL    N+     + +V+ L+ L  L   TNK +   
Sbjct: 70  ICTSNNITTLD----LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT--- 119

Query: 143 PGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY 202
             D+     L  +    N+ T      +     L  LD  +N        ++   T L+ 
Sbjct: 120 KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTT 174

Query: 203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 262
           L  + N+++    L +S    LN L    N                +  L          
Sbjct: 175 LDCSFNKITE---LDVSQNKLLNRLNCDTN---------------NITKL---------- 206

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLL 322
              ++    +L +L    N  +     ++  LT L   D S N L+  +   +  L+ L 
Sbjct: 207 ---DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT 257

Query: 323 SLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGS 382
           +L     +L   I   +     L+ F     +   EL  +++   +L          +  
Sbjct: 258 TLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-E 311

Query: 383 IPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNL 442
           +  D  +  P L+ +  +N   + EL     +   L+ L+    +      + +     L
Sbjct: 312 L--DLSQN-PKLVYLYLNNTELT-ELDVSHNT--KLKSLSCVNAHIQ-DFSS-VGKIPAL 363

Query: 443 NRVRFDGNQFT 453
           N       Q  
Sbjct: 364 NNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 2e-22
 Identities = 74/400 (18%), Positives = 141/400 (35%), Gaps = 65/400 (16%)

Query: 273 LQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332
                              E+L +L +LD   + ++      +  LT L  L   SNN++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 333 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSP 392
                ++    +L     ++N+L   L   ++ L KL   +  TN  +           P
Sbjct: 78  T---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQN----P 127

Query: 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
            L  ++ + N+ + E+     +   L EL  + N     L   +   + L  +    N+ 
Sbjct: 128 LLTYLNCARNTLT-EIDVSHNT--QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
           T            LD                  + + L+ L  D N I+     +L    
Sbjct: 183 TE-----------LDV----------------SQNKLLNRLNCDTNNITK---LDLNQNI 212

Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
           +L  L   SN+LT     D+  L +L   + S N LT E+   +S L++L  L      L
Sbjct: 213 QLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDL 266

Query: 573 TGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL 632
                 +L    +L+           E+  ++ +   L   LD  +  ++  +   L + 
Sbjct: 267 LEI---DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYL-LDCQAAGIT-ELD--LSQN 317

Query: 633 TSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
             L  L L+  +L+  +   +S    L+S+   +  + + 
Sbjct: 318 PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 67/356 (18%), Positives = 124/356 (34%), Gaps = 59/356 (16%)

Query: 320 NLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
           N  S    +  +  T       +A+L + D + + +  ++   I +L  L K    +NN 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN- 75

Query: 380 SGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNC 439
                         +  +  S N+              L  L  + N  T +L   +   
Sbjct: 76  --------------ITTLDLSQNT-------------NLTYLACDSNKLT-NLD--VTPL 105

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR 499
           + L  +  D N+ T         +P L ++  + N        D      L+ L    N+
Sbjct: 106 TKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNK 159

Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNL 559
                  ++   T+L  L    N++T     D+ +   L  LN   N++T ++   ++  
Sbjct: 160 KIT--KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQN 211

Query: 560 TELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSN 619
            +L +LD S+NKLT ++   +    +L   + S N L+    S L  L  L         
Sbjct: 212 IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL----HCIQT 264

Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVT 675
            L   I   L   T L        +    +   ++    L  +D     +TEL ++
Sbjct: 265 DLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLS 315

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (284), Expect = 2e-27
 Identities = 74/334 (22%), Positives = 125/334 (37%), Gaps = 47/334 (14%)

Query: 6   ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNEL 65
            L+ +   D  L  A+P ++S       LDL  N +       F  +             
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQ------------ 78

Query: 66  TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKL 125
                       +L  L L  NK+S  I E+ F+ L KL+ L +++N    ++ PN+   
Sbjct: 79  ------------HLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--P 122

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMN 184
           S+L++LR+  N+      G    + N+  +E+  N                L +L +   
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG 244
            L   IP    L   L+ L L  N++       L   SKL  LGL  N +   I    + 
Sbjct: 183 KLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS 238

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-------EKLTSL 297
               L  L + NN  +  +P  +  L  LQ ++L+ NN +  +            K    
Sbjct: 239 FLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYY 296

Query: 298 ENLDLSGNQLS-GTIPP-TLWNLTNLLSLQLFSN 329
             + L  N +    + P T   +T+ L++Q  + 
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 8e-24
 Identities = 61/266 (22%), Positives = 102/266 (38%), Gaps = 19/266 (7%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
              L +  N+ +       +   +L  +    N+ +    KAF    +L  + +S N  V
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT-GKIPTDLGKLV 536
            EI P      +L  L++  NRI          L  +  + +  N L            +
Sbjct: 116 -EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
           KL  L +S   LT  IPK +     L  L L +NK+     ++L R+ KL  L L HN +
Sbjct: 173 KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 597 SGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPAS--- 652
              I +  L  L  L+  L L +N LS  +P  L  L  L+++ L  N ++ ++  +   
Sbjct: 230 R-MIENGSLSFLPTLRE-LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 653 ----LSSMISLRSVDFSDNELTELAV 674
                        +   +N +    V
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEV 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 62/281 (22%), Positives = 102/281 (36%), Gaps = 41/281 (14%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATN 136
           +L  +  S   L   +P+ +  +      L+L  N    +L  +    L +L  L L  N
Sbjct: 34  HLRVVQCSDLGLKA-VPKEISPDT---TLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL 196
                           ++ ++   +F+         L+ LQ L +  N L   IPP   L
Sbjct: 89  ----------------KISKIHEKAFSP--------LRKLQKLYISKNHLV-EIPP--NL 121

Query: 197 CTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN 256
            ++L  L +  N++        S L  +N + +  N L          +  +L  L+I  
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPP-T 314
                 IP    L   L  L L  N     I  E   + + L  L L  NQ+   I   +
Sbjct: 182 AKL-TGIPK--DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIR-MIENGS 236

Query: 315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355
           L  L  L  L L +N LS  +P  +  +  L    ++TN +
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 73/320 (22%), Positives = 116/320 (36%), Gaps = 47/320 (14%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTNL 321
           +P EI        L L  N+ S     + + L  L  L L  N++S  I       L  L
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKL 104

Query: 322 LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381
             L +  N+L   IPP     +SLV   ++ N++        S L  +N   +  N    
Sbjct: 105 QKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP--- 158

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
                       L N  F   +F          G  L  L ++    T  +P  L     
Sbjct: 159 ------------LENSGFEPGAF---------DGLKLNYLRISEAKLT-GIPKDL--PET 194

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRI 500
           LN +  D N+      +    + +L  + L  NQ +  I          L  L LD N++
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKL 253

Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTD-------LGKLVKLFNLNLSNNHLT-GEI 552
           S  +PA L +L  L V+ L +N +T K+  +         K      ++L NN +   E+
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 553 PKSI-SNLTELAYLDLSNNK 571
             +    +T+   +   N K
Sbjct: 312 QPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 21/241 (8%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L +LQ L +  N+L    P   SSL     L +  N +       FS + ++  + +  
Sbjct: 100 PLRKLQKLYISKNHLVEIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 63  NELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
           N L    F         L YL +S  KL+G IP+ L      L  L+L  N+ Q  +   
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPET---LNELHLDHNKIQ-AIELE 211

Query: 122 V-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
              + S L  L L  N+      G +  +  L+ + L NN  + ++P+ L  LK LQ + 
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 181 LRMNALNYTIPPE-------LGLCTNLSYLALAVNQLSGGL--PLSLSNLSKLNDLGLSD 231
           L  N +   +                 + ++L  N +      P +   ++    +   +
Sbjct: 271 LHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 232 N 232
            
Sbjct: 330 Y 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 61/279 (21%), Positives = 104/279 (37%), Gaps = 22/279 (7%)

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL 436
           N+ S     DF      L  +   NN  S            L++L ++ N+    +P  L
Sbjct: 64  NDISELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL 121

Query: 437 RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF-VGEISPDWGECRNLSNLQL 495
              S+L  +R   N+        F     ++ I + GN        P   +   L+ L++
Sbjct: 122 --PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 496 DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT-DLGKLVKLFNLNLSNNHLTGEIPK 554
              +++G IP +L     L  L LD N++   I   DL +  KL+ L L +N +      
Sbjct: 180 SEAKLTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 555 SISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-------LGNL 607
           S+S L  L  L L NNKL+  VP  L     L  + L  N+++ ++  N           
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 608 FVLQYMLDLSSNSLS-GTIPQEL-GKLTSLEILNLSRNQ 644
                 + L +N +    +       +T    +     +
Sbjct: 294 AYYNG-ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  110 bits (276), Expect = 2e-26
 Identities = 61/281 (21%), Positives = 112/281 (39%), Gaps = 21/281 (7%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
             ++ L + +N +       L     ++ L L  N + T +   FSS+ SL HL L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-S 123
           L+    S+     +LT+L+L  N    L    LF++L KL+ L +       K+     +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
            L+ L +L +  +      P  + S+ N+  + L        +   +    +++ L+LR 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 184 NALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
             L+                    ++LS G   SL       ++ ++D  L       L+
Sbjct: 232 TDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLFQV--MKLL 273

Query: 244 GNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNF 283
              + L  L+   N    ++P  I   LT LQ ++L+ N +
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 3e-22
 Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 14/240 (5%)

Query: 4   LSELQYLSVYDNNLNGAIPFQL-SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
              LQ L +  N +N  I     SSL  + +LDL  N+L     S F  + SLT L L  
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 63  NELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
           N    L   S       L  L +        I  + F  L  LE L +  +  Q    P 
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPK 192

Query: 122 V-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG----QIPS----SLGQ 172
               + N+  L L   +    +   +   S+++ +EL +         ++ +    SL +
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 173 LKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
               +++ +   +L   +   L   + L  L  + NQL          L+ L  + L  N
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 14/261 (5%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
           ++ L ++ N  T    + L+ C NL  +    N        +F     L+ + LS N  +
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-L 112

Query: 478 GEISPDW-GECRNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTD-LGK 534
             +S  W     +L+ L L  N         L  +LT+L +L + + +   KI       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           L  L  L +  + L    PKS+ ++  +++L L   +    +   +     +  L L   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 595 DLSG----EIPS----NLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
           DL      E+ +    +L   F  +  + ++  SL   + + L +++ L  L  SRNQL 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRN-VKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 647 GRIPASLSSMISLRSVDFSDN 667
                    + SL+ +    N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 46/309 (14%)

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQL 326
           GL   ++ L L  N  +    S++++  +L+ L L+ N ++ TI   +  +L +L  L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD 386
             N LS  +            F                 L  L   ++  N +       
Sbjct: 108 SYNYLS-NLSSS--------WFK---------------PLSSLTFLNLLGNPYKTLGETS 143

Query: 387 FGKFSPSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFTGSLPACLRNCSNLNRV 445
                  L  +   N     ++  +  +G   LEEL ++ ++     P  L++  N++ +
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIP 505
                Q    +     V   ++ + L                  L       + +S G  
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTD--------------LDTFHF--SELSTGET 247

Query: 506 AELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAY 564
             L        + +    L  ++   L ++  L  L  S N L   +P  I   LT L  
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305

Query: 565 LDLSNNKLT 573
           + L  N   
Sbjct: 306 IWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 63/283 (22%), Positives = 111/283 (39%), Gaps = 20/283 (7%)

Query: 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSL 218
           + S    IPS L   + ++ LDL  N + Y    +L  C NL  L L  N ++     S 
Sbjct: 40  SGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96

Query: 219 SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI--GLLTKLQYL 276
           S+L  L  L LS N+LS  +S++     + L  L +  N +   +        LTKLQ L
Sbjct: 97  SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154

Query: 277 FLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTI 335
            +   +    I  +    LT LE L++  + L    P +L ++ N+  L L        +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 336 PPEI-GSMASLVAFDVNTNQLHGELPENISR-----LVKLNKFSV--FTNNFSGSIPGDF 387
                   +S+   ++    L       +S      L+K   F     T+     +    
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 388 GKFSPSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFT 429
            +    L+ + FS N     +P  +     +L+++ ++ N + 
Sbjct: 274 NQI-SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 51/225 (22%), Positives = 87/225 (38%), Gaps = 15/225 (6%)

Query: 461 GVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSL 519
           G+   +  + LS N+     + D   C NL  L L  N I+  I  +   +L  L  L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDL 107

Query: 520 DSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVP 577
             N L+  + +     L  L  LNL  N        S+ S+LT+L  L + N      + 
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 578 QE-LGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLE 636
           ++       L  L +  +DL    P +L ++  + + L L        +   +   +S+E
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH-LILHMKQHILLLEIFVDVTSSVE 225

Query: 637 ILNLSRNQLSGRIPASLSS--------MISLRSVDFSDNELTELA 673
            L L    L     + LS+          + R+V  +D  L ++ 
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 29/170 (17%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            L++LQ L V + +    I  +  + L  +  L++  + L++ +     S+ +++HL L+
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGL-------IPERLFTNLGKLEYLNLTENQF 114
           + +  L    F+    ++  L+L    L                        + +T+   
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI-GSMSNLQLVELFNNSFT 163
             ++   ++++S L++L  + N+    +P  I   +++LQ + L  N + 
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (265), Expect = 3e-25
 Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 39/286 (13%)

Query: 54  SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113
           S T +      LT   P+ I +  + T L+L  NKL   +P  +F  L +L  L+L+ N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 114 --FQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL- 170
             F+G  S +    ++L  L L+ N     +  +   +  L+ ++  +++       S+ 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 171 GQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAVNQLSGGL-PLSLSNLSKLNDL 227
             L+NL +LD+            +  GL ++L  L +A N       P   + L  L  L
Sbjct: 123 LSLRNLIYLDISHTHTR-VAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 228 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPI 287
            LS   L                  Q+   +F          L+ LQ L +  NNF    
Sbjct: 181 DLSQCQLE-----------------QLSPTAFNS--------LSSLQVLNMSHNNFFSLD 215

Query: 288 PSEIEKLTSLENLDLSGNQLSGTIPPTLWNL-TNLLSLQLFSNNLS 332
               + L SL+ LD S N +  +    L +  ++L  L L  N+ +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (260), Expect = 1e-24
 Identities = 62/260 (23%), Positives = 98/260 (37%), Gaps = 34/260 (13%)

Query: 31  VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILT-CRNLTYLDLSLNK 88
              L+L  N L++     F  +  LT L L  N L+     S       +L YLDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIG 147
           +  +     F  L +LE+L+   +  +     +V   L NLI L +              
Sbjct: 90  VITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI-------------- 133

Query: 148 SMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPE-LGLCTNLSYLALA 206
             S+      FN  F G        L +L+ L +  N+      P+      NL++L L+
Sbjct: 134 --SHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266
             QL    P + ++LS L  L +S N     +          L+ L    N  M     +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ 241

Query: 267 I--GLLTKLQYLFLYRNNFS 284
                 + L +L L +N+F+
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 9/214 (4%)

Query: 4   LSELQYLSVYDNNLN--GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
           L++L  LS+  N L+  G           ++YLDL  N + T   S F  +  L HL   
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQ 109

Query: 62  LNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
            + L  +   S  L+ RNL YLD+S      +    +F  L  LE L +  N FQ    P
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 121 NV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
           ++ ++L NL  L L+  +     P    S+S+LQ++ + +N+F          L +LQ L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 180 DLRMNALNYTIPPEL--GLCTNLSYLALAVNQLS 211
           D  +N +  T   +      ++L++L L  N  +
Sbjct: 229 DYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 8/214 (3%)

Query: 464 PRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS--GGIPAELGNLTRLGVLSLDS 521
                + L  N+        + +   L+ L L  N +S  G         T L  L L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 522 NELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQEL 580
           N +   + ++   L +L +L+  +++L      S+  +L  L YLD+S+           
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 581 GRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEIL 638
                L  L ++ N        +    L  L + LDLS   L   +       L+SL++L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLE-QLSPTAFNSLSSLQVL 204

Query: 639 NLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           N+S N            + SL+ +D+S N +   
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 55/269 (20%), Positives = 94/269 (34%), Gaps = 34/269 (12%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC--TN 199
           +P  I S  +   +EL +N           +L  L  L L  N L++           T+
Sbjct: 22  VPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 200 LSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259
           L YL L+ N +   +  +   L +L  L    + L      ++  +   L  L I +   
Sbjct: 80  LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH- 137

Query: 260 MGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPP-TLW 316
                  I   L+ L+ L +  N+F      +I  +L +L  LDLS  QL   + P    
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFT 376
           +L++L  L +  NN   ++            +                 L  L       
Sbjct: 197 SLSSLQVLNMSHNNFF-SLDTF--------PYK---------------CLNSLQVLDYSL 232

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFS 405
           N+   S   +   F  SL  ++ + N F+
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 11/236 (4%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT--GNITKAFGVHPRLDFIRLSGNQ 475
              L +  N             + L ++    N  +  G  +++      L ++ LS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 476 FVGEISPDWGECRNLSNLQLDRNRISGGIPAE--LGNLTRLGVLSLDSNELTGKIPTDLG 533
            V  +S ++     L +L    + +   +       +L  L  L +              
Sbjct: 90  -VITMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 534 KLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLS 592
            L  L  L ++ N         I + L  L +LDLS  +L    P        L  LN+S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 593 HNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL--GKLTSLEILNLSRNQLS 646
           HN+           L  LQ  LD S N +  T  ++      +SL  LNL++N  +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQV-LDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 13/260 (5%)

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
           +   +      L  ++P   G+ ++ + L L  N+L          L++L  L LS N L
Sbjct: 8   SGTEIRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 235 S-GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG-PIPSEIE 292
           S     +      T L+ L +  N  +  +      L +L++L    +N       S   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 293 KLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVN 351
            L +L  LD+S              L++L  L++  N+      P+I   + +L   D++
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 352 TNQLHGELPENISR-LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPH 410
             QL  +L       L  L   ++  NNF  S+     K   SL  + +S N        
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

Query: 411 ELCSGF--ALEELTVNGNNF 428
           +    F  +L  L +  N+F
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 14/248 (5%)

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFT--GSLPACLRNC 439
           S+P        S   +   +N               L +L+++ N  +  G         
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ---LD 496
           ++L  +    N     ++  F    +L+ +    +    +   ++    +L NL    + 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDIS 134

Query: 497 RNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLFNLNLSNNHLTGEIPKS 555
                         L+ L VL +  N        D   +L  L  L+LS   L  ++  +
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 193

Query: 556 I-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYML 614
             ++L+ L  L++S+N             + L  L+ S N +       L +       L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 615 DLSSNSLS 622
           +L+ N  +
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 7/141 (4%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN-FLETPDWSKFSSMPSLTHLGLY 61
            L  L YL +   +   A     + L  +  L + GN F E      F+ + +LT L L 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 62  LNELTLEFPSFILTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             +L  +          +L  L++S N     +    +  L  L+ L+ + N        
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

Query: 121 NV--SKLSNLIDLRLATNKFS 139
                  S+L  L L  N F+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (272), Expect = 3e-25
 Identities = 61/283 (21%), Positives = 102/283 (36%), Gaps = 57/283 (20%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
            N  YL+L  N +   I    F +L  LE L L  N  + ++     + L++L  L L  
Sbjct: 75  SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
           N                 L  + + +F          L  L+ L LR N +  +IP    
Sbjct: 133 N----------------WLTVIPSGAFEY--------LSKLRELWLRNNPIE-SIPSY-- 165

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ 255
                                + + +  L  L L +      IS         L+ L + 
Sbjct: 166 ---------------------AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-T 314
             +      P +  L  L+ L +  N+F    P     L+SL+ L +  +Q+S  I    
Sbjct: 205 MCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

Query: 315 LWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLH 356
              L +L+ L L  NNLS ++P ++   +  LV   ++ N  +
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 9e-25
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 13/233 (5%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSLNKLS 90
           RYL+L  N ++      F  +  L  L L  N +  +E  +F     +L  L+L  N L+
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNWLT 136

Query: 91  GLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLA-TNKFSGPIPGDIGS 148
            +IP   F  L KL  L L  N  +  +     +++ +L+ L L    K      G    
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 149 MSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALA 206
           + NL+ + L   +    +P +L  L  L+ L++  N     I P    GL ++L  L + 
Sbjct: 195 LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGL-SSLKKLWVM 250

Query: 207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259
            +Q+S     +   L+ L +L L+ N LS  +  +L      L  L + +N +
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (258), Expect = 2e-23
 Identities = 53/234 (22%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD--WGECRNLSNLQLDR 497
           SN   +    N         F     L+ ++L  N  + +I      G   +L+ L+L  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNG-LASLNTLELFD 132

Query: 498 NRISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLFNLNLSN-NHLTGEIPK 554
           N ++  IP+     L++L  L L +N +   IP+    ++  L  L+L     L      
Sbjct: 133 NWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 555 SISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQYM 613
           +   L  L YL+L    +       L     L  L +S N    EI       L  L+  
Sbjct: 191 AFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK- 246

Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
           L + ++ +S         L SL  LNL+ N LS       + +  L  +    N
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 59/216 (27%), Positives = 86/216 (39%), Gaps = 10/216 (4%)

Query: 461 GVHPRLDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL 519
           G+     ++ L  N     I  D      +L  LQL RN I          L  L  L L
Sbjct: 72  GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 520 DSNELTGKIPTD-LGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSN-NKLTGDV 576
             N LT  IP+     L KL  L L NN +   IP    + +  L  LDL    KL    
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 577 PQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLE 636
                    L  LNL   ++  ++P+ L  L  L+  L++S N      P     L+SL+
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEE-LEMSGNHFPEIRPGSFHGLSSLK 245

Query: 637 ILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
            L +  +Q+S     +   + SL  ++ + N L+ L
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 8/210 (3%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L  L+ L +  N++        + L  +  L+L  N+L       F  +  L  L L  N
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 64  ELTLEFPSFILT-CRNLTYLDLS-LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            +    PS+      +L  LDL  L KL   I E  F  L  L+YLNL     +    PN
Sbjct: 158 PIE-SIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKD--MPN 213

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           ++ L  L +L ++ N F    PG    +S+L+ + + N+  +    ++   L +L  L+L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 182 RMNALNYTIPPE-LGLCTNLSYLALAVNQL 210
             N L+ ++P +       L  L L  N  
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 15/260 (5%)

Query: 391 SPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGN 450
           S     V  +    S E+P  + S      L +  NN         R+  +L  ++   N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 451 QFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNRISGGIPAE-L 508
                   AF     L+ + L  N  +  I          L  L L  N I   IP+   
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAF 167

Query: 509 GNLTRLGVLSL-DSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
             +  L  L L +  +L          L  L  LNL   ++  ++P +++ L  L  L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEM 225

Query: 568 SNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIP 626
           S N      P        L  L + ++ +S  I  N    L  L   L+L+ N+LS ++P
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVE-LNLAHNNLS-SLP 282

Query: 627 QE-LGKLTSLEILNLSRNQL 645
            +    L  L  L+L  N  
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.4 bits (240), Expect = 4e-21
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 6/188 (3%)

Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD-LGKLVKLFNLNLSNN 546
            N   L L  N I         +L  L VL L  N +  +I       L  L  L L +N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 547 HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LG 605
            LT     +   L++L  L L NN +         R   L+ L+L        I      
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 606 NLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFS 665
            LF L+Y L+L   ++   +P  L  L  LE L +S N      P S   + SL+ +   
Sbjct: 194 GLFNLKY-LNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 666 DNELTELA 673
           +++++ + 
Sbjct: 251 NSQVSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 57/306 (18%), Positives = 98/306 (32%), Gaps = 60/306 (19%)

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
               +      L+  +P   G+ +N  YL L  N +      +  +L  L  L L  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EK 293
                             QI+  +F G        L  L  L L+ N  +  IPS   E 
Sbjct: 112 R-----------------QIEVGAFNG--------LASLNTLELFDNWLTV-IPSGAFEY 145

Query: 294 LTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVN 351
           L+ L  L L  N +  +IP      + +L+ L L        I       + +L   ++ 
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 352 TNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE 411
              +  ++P  ++ LV L +  +  N+F                       SF G L   
Sbjct: 205 MCNIK-DMPN-LTPLVGLEELEMSGNHFP-----------------EIRPGSFHG-LSS- 243

Query: 412 LCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL 471
                 L++L V  +  +          ++L  +    N  +      F     L  + L
Sbjct: 244 ------LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 472 SGNQFV 477
             N + 
Sbjct: 298 HHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 53/239 (22%), Positives = 78/239 (32%), Gaps = 8/239 (3%)

Query: 358 ELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
           E+P+ I S    LN   +  NN        F      L  +    NS             
Sbjct: 68  EVPQGIPSNTRYLN---LMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLA 123

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
           +L  L +  N  T          S L  +    N      + AF   P L  + L   + 
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 477 VGEISPD-WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKL 535
           +  IS   +    NL  L L    I   +P  L  L  L  L +  N      P     L
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 536 VKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
             L  L + N+ ++     +   L  L  L+L++N L+            L+ L+L HN
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 6/162 (3%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGG-NFLETPDWSKFSSMPSLTHLGLY 61
            LS+L+ L + +N +     +  + +  +  LDLG    LE      F  + +L +L L 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
           +  +  + P+       L  L++S N     I    F  L  L+ L +  +Q    +  N
Sbjct: 205 MCNIK-DMPNL-TPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVS-LIERN 260

Query: 122 V-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162
               L++L++L LA N  S         +  L  + L +N +
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L  L+YL++   N+   +P  L+ L  +  L++ GN         F  + SL  L +  
Sbjct: 194 GLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
           ++++L   +      +L  L+L+ N LS L P  LFT L  L  L+L  N + 
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 583 FDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSR 642
            ++   +  +   LS E+P  +         L+L  N++          L  LE+L L R
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 643 NQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           N +      + + + SL +++  DN LT +
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (264), Expect = 3e-24
 Identities = 60/283 (21%), Positives = 100/283 (35%), Gaps = 57/283 (20%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
            N   L+L  N++   I    F +L  LE L L+ N  +  +     + L+NL  L L  
Sbjct: 64  TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
           N                +L  + N +F          L  L+ L LR N +  +IP    
Sbjct: 122 N----------------RLTTIPNGAFVY--------LSKLKELWLRNNPIE-SIPSY-- 154

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ 255
                                + + +  L  L L +      IS       + L  L + 
Sbjct: 155 ---------------------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-T 314
             +      P +  L KL  L L  N+ S   P   + L  L+ L +  +Q+   I    
Sbjct: 194 MCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250

Query: 315 LWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLH 356
             NL +L+ + L  NNL+  +P ++   +  L    ++ N  +
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (255), Expect = 4e-23
 Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 12/258 (4%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
           +    V     +   ++P  +    N + L+L  N +            +L  L L+ N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 210 LSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-G 268
           +      + + L+ LN L L DN L+  I        ++L+ L ++NN    +IP     
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFN 157

Query: 269 LLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327
            +  L+ L L        I     E L++L  L+L+   L     P L  L  L  L L 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLS 215

Query: 328 SNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD 386
            N+LS  I P     +  L    +  +Q+          L  L + ++  NN +  +P D
Sbjct: 216 GNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273

Query: 387 FGKFSPSLINVSFSNNSF 404
                  L  +   +N +
Sbjct: 274 LFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (255), Expect = 4e-23
 Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 31/257 (12%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           +  + L++++N +          LR +  L L  N + T +   F+ + +L  L L+ N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 65  LTLEFPSFILTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
           LT   P+        L  L L  N +   IP   F  +  L  L+L E +    +S    
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
             LSNL  L LA       IP ++  +  L  ++L  N  +   P S   L +LQ L + 
Sbjct: 182 EGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            + +   I                          +  NL  L ++ L+ N L+  +  +L
Sbjct: 240 QSQIQV-IERN-----------------------AFDNLQSLVEINLAHNNLT-LLPHDL 274

Query: 243 IGNWTELESLQIQNNSF 259
                 LE + + +N +
Sbjct: 275 FTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (251), Expect = 1e-22
 Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 12/233 (5%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD--WGECRNLSNLQLDR 497
           +N   +    NQ       +F     L+ ++LS N  +  I      G   NL+ L+L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG-LANLNTLELFD 121

Query: 498 NRISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLS-NNHLTGEIPK 554
           NR++  IP      L++L  L L +N +   IP+    ++  L  L+L     L+     
Sbjct: 122 NRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 555 SISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYML 614
           +   L+ L YL+L+   L  ++P  L    KL  L+LS N LS   P +   L  LQ  L
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK-L 236

Query: 615 DLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
            +  + +          L SL  +NL+ N L+       + +  L  +    N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (250), Expect = 2e-22
 Identities = 69/249 (27%), Positives = 95/249 (38%), Gaps = 12/249 (4%)

Query: 429 TGSLPACLRNCS---NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWG 485
           TGS   C   CS     ++V          +    G+      + L  NQ        + 
Sbjct: 29  TGSAQTCPSVCSCSNQFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFK 85

Query: 486 ECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
             R+L  LQL RN I          L  L  L L  N LT         L KL  L L N
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 546 NHLTGEIPKSI-SNLTELAYLDLS-NNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN 603
           N +   IP    + +  L  LDL    +L+            L  LNL+  +L  EIP+ 
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN- 202

Query: 604 LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVD 663
           L  L  L   LDLS N LS   P     L  L+ L + ++Q+      +  ++ SL  ++
Sbjct: 203 LTPLIKLDE-LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 664 FSDNELTEL 672
            + N LT L
Sbjct: 262 LAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 5e-21
 Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 4/187 (2%)

Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
            N   L L  N+I         +L  L +L L  N +          L  L  L L +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 548 LTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGN 606
           LT     +   L++L  L L NN +         R   L  L+L        I       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 607 LFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSD 666
           L  L+Y L+L+  +L   IP  L  L  L+ L+LS N LS   P S   ++ L+ +    
Sbjct: 184 LSNLRY-LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 667 NELTELA 673
           +++  + 
Sbjct: 241 SQIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 8e-21
 Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 14/234 (5%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
              L ++ N          ++  +L  ++   N        AF     L+ + L  N+ +
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-L 124

Query: 478 GEISPDW-GECRNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSL-DSNELTGKIPTD-LG 533
             I          L  L L  N I   IP+     +  L  L L +   L+  I      
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLS-YISEGAFE 182

Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH 593
            L  L  LNL+  +L  EIP +++ L +L  LDLS N L+   P        L  L +  
Sbjct: 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 594 NDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQL 645
           + +   I  N   NL  L   ++L+ N+L+  +P +    L  LE ++L  N  
Sbjct: 241 SQIQ-VIERNAFDNLQSLVE-INLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY- 61
            L+ L  L ++DN L          L K++ L L  N +E+     F+ +PSL  L L  
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 62  LNELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           L  L+            NL YL+L++  L   IP    T L KL+ L+L+ N     + P
Sbjct: 170 LKRLS-YISEGAFEGLSNLRYLNLAMCNLRE-IPN--LTPLIKLDELDLSGNHLS-AIRP 224

Query: 121 NV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
                L +L  L +  ++          ++ +L  + L +N+ T         L +L+ +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 180 DLRMNALN 187
            L  N  N
Sbjct: 285 HLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 53/239 (22%), Positives = 77/239 (32%), Gaps = 8/239 (3%)

Query: 358 ELPENIS-RLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
           E+P+ IS     LN   +  N         F      L  +  S N              
Sbjct: 57  EVPDGISTNTRLLN---LHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
            L  L +  N  T          S L  +    N      + AF   P L  + L   + 
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 477 VGEISPDW-GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKL 535
           +  IS        NL  L L    +   IP  L  L +L  L L  N L+   P     L
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 536 VKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           + L  L +  + +      +  NL  L  ++L++N LT            L  ++L HN
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (267), Expect = 3e-24
 Identities = 79/467 (16%), Positives = 141/467 (30%), Gaps = 91/467 (19%)

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF--MGNIPPEIGLLT 271
           + L ++N   L+      N +S    A+    W + E   +   +     ++  E  L+ 
Sbjct: 3   IMLPINNNFSLSQN-SFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LIN 59

Query: 272 KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNL 331
           +   L L R N S  +P  +     +  L+++ N L  ++P    +L  L       N L
Sbjct: 60  QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLEYL---DACDNRL 112

Query: 332 SGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS 391
           S T+P    S+  L   DV+ NQL   LPE  + L  +N                     
Sbjct: 113 S-TLPELPASLKHL---DVDNNQLT-MLPELPALLEYIN--------------------- 146

Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
                    NN  +  LP    S   LE L+V  N  T  LP    +   L+        
Sbjct: 147 -------ADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPELPESLEALD-------- 186

Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSN----LQLDRNRISGGIPAE 507
                              +S N     +        +        +   NRI+  IP  
Sbjct: 187 -------------------VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPEN 225

Query: 508 LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
           + +L     + L+ N L+ +I   L +     + +    + +    +   N       D 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ--QNTLHRPLADA 283

Query: 568 SNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQ 627
                  +   ++ +           N  S      L +    +             +  
Sbjct: 284 VTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQ-----VAA 337

Query: 628 ELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAV 674
            L KL++   L      ++     S    ++L   +     L   A 
Sbjct: 338 WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQAS 384

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (263), Expect = 1e-23
 Identities = 55/280 (19%), Positives = 104/280 (37%), Gaps = 32/280 (11%)

Query: 82  LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSG 140
            +   N +SG      F+   K E   L        +S      ++   +L+L     S 
Sbjct: 15  QNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
            +P ++     + ++E+  N+    +P       +L++LD   N L+ T+P       +L
Sbjct: 74  -LPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPA---SL 122

Query: 201 SYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 260
            +L +  NQL+  LP   + L  +N     +N L+  +        T LE L ++NN   
Sbjct: 123 KHLDVDNNQLT-MLPELPALLEYIN---ADNNQLT-MLPELP----TSLEVLSVRNNQL- 172

Query: 261 GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN----LDLSGNQLSGTIPPTLW 316
             +P    L   L+ L +  N     +P+   +    E          N+++  IP  + 
Sbjct: 173 TFLPE---LPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL 227

Query: 317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
           +L    ++ L  N LS  I   +    +   +        
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (255), Expect = 1e-22
 Identities = 59/324 (18%), Positives = 103/324 (31%), Gaps = 59/324 (18%)

Query: 47  SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
           S +         G   NE        ++     + L L+   LS L P+ L   +     
Sbjct: 31  SAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLSSL-PDNLPPQI---TV 84

Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
           L +T+N     L       ++L  L    N+ S  +P    S+ +L +    NN  T  +
Sbjct: 85  LEITQNALI-SLPEL---PASLEYLDACDNRLST-LPELPASLKHLDV---DNNQLT-ML 135

Query: 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND 226
           P        L++++   N L   +P      T+L  L++  NQL+  LP    +L  L+ 
Sbjct: 136 PELPA---LLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLTF-LPELPESLEALD- 186

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ----YLFLYRNN 282
             +S N L                           ++P         +    +     N 
Sbjct: 187 --VSTNLLE--------------------------SLPAVPVRNHHSEETEIFFRCRENR 218

Query: 283 FSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSM 342
            +  IP  I  L     + L  N LS  I  +L   T           +  ++     + 
Sbjct: 219 ITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH--GPRIYFSMSDGQQNT 275

Query: 343 ASLVAFDVNTNQLHGELPENISRL 366
                 D  T         ++S++
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.7 bits (230), Expect = 1e-19
 Identities = 59/339 (17%), Positives = 118/339 (34%), Gaps = 37/339 (10%)

Query: 4   LSELQYLSVYDNNLNGAIPF-QLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLY 61
             + +  ++   N N A+   +   + +   L L    L + PD    +  P +T L + 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD----NLPPQITVLEIT 88

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N L    P       +L YLD   N+LS L PE        L++L++  NQ    L   
Sbjct: 89  QNALI-SLPELP---ASLEYLDACDNRLSTL-PEL----PASLKHLDVDNNQLT-MLPEL 138

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
            + L     +    N+ +  +P      ++L+++ + NN  T  +P       +L+ LD+
Sbjct: 139 PALLEY---INADNNQLTM-LP---ELPTSLEVLSVRNNQLT-FLPELPE---SLEALDV 187

Query: 182 RMNALNYTIPPELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE 237
             N L  ++P       +      +     N+++  +P ++ +L     + L DN LS  
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-S 244

Query: 238 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSL 297
                +   T           F  ++                   F     S++ ++   
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 298 ENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP 336
              +   N  S      L +  +  +   F   ++  + 
Sbjct: 303 FEHEEHANTFS-AFLDRLSDTVSARNTSGFREQVAAWLE 340

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 4e-14
 Identities = 64/350 (18%), Positives = 109/350 (31%), Gaps = 58/350 (16%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLYL 62
            + L+YL   DN L+  +P   +SL+    LD+  N L   P+         L ++    
Sbjct: 99  PASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLTMLPE-----LPALLEYINADN 149

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+LT   P       +L  L +  N+L+ L PE        LE L+++ N  +  L    
Sbjct: 150 NQLT-MLPELP---TSLEVLSVRNNQLTFL-PE----LPESLEALDVSTNLLES-LPAVP 199

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
            +  +  +  +                          N  T  IP ++  L     + L 
Sbjct: 200 VRNHHSEETEIFFR--------------------CRENRIT-HIPENILSLDPTCTIILE 238

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N L+  I   L   T            S        N            +      +++
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSM--SDGQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNN--FSGPIPSEIEKLTSLENL 300
              W   E  +   N+F          L +L      RN   F   + + +EKL++   L
Sbjct: 297 SQIWHAFEHEE-HANTFSAF-------LDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

Query: 301 DLSGNQLSGTIPPT-----LWNLTNLLSLQLFSNNLSGTIPPEIGSMASL 345
                 ++     +          NL    L      G    + G++ SL
Sbjct: 349 RQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 52/209 (24%), Positives = 74/209 (35%), Gaps = 6/209 (2%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           +  Q + ++ N ++        + R +  L L  N L   D + F+ +  L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 65  LTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
                          L  L L    L   +   LF  L  L+YL L +N  Q  L  +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
             L NL  L L  N+ S         + +L  + L  N      P +   L  L  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 183 MNALNYTIPPE-LGLCTNLSYLALAVNQL 210
            N L+  +P E L     L YL L  N  
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 461 GVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLD 520
           G+      I L GN+     +  +  CRNL+ L L  N ++    A    L  L  L L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 521 SNELTGKIPTD-LGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQ 578
            N     +       L +L  L+L    L  E+   +   L  L YL L +N L   +P 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 579 ELGRFDKLLSL---NLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSL 635
               F  L +L    L  N +S         L  L   L L  N ++   P     L  L
Sbjct: 147 --DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR-LLLHQNRVAHVHPHAFRDLGRL 203

Query: 636 EILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
             L L  N LS     +L+ + +L+ +  +DN
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.4 bits (238), Expect = 7e-22
 Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 4/188 (2%)

Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
                + L  NRIS    A       L +L L SN L          L  L  L+LS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 548 LTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LG 605
               +  +    L  L  L L    L    P        L  L L  N L   +P +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 606 NLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFS 665
           +L  L + L L  N +S    +    L SL+ L L +N+++   P +   +  L ++   
Sbjct: 151 DLGNLTH-LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 666 DNELTELA 673
            N L+ L 
Sbjct: 210 ANNLSALP 217

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 54/204 (26%), Positives = 78/204 (38%), Gaps = 6/204 (2%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSG 91
           + + L GN +     + F +  +LT L L+ N L     +       L  LDLS N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 92  LIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMS 150
            +    F  LG+L  L+L     Q +L P +   L+ L  L L  N            + 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAVN 208
           NL  + L  N  +     +   L +L  L L  N +   + P     L   L  L L  N
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDL-GRLMTLYLFAN 211

Query: 209 QLSGGLPLSLSNLSKLNDLGLSDN 232
            LS     +L+ L  L  L L+DN
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 50/236 (21%), Positives = 83/236 (35%), Gaps = 11/236 (4%)

Query: 148 SMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV 207
                             +P  +      Q + L  N +++        C NL+ L L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI 267
           N L+     + + L+ L  L LSDN     +          L +L +        + P +
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

Query: 268 -GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ 325
              L  LQYL+L  N     +P +    L +L +L L GN++S         L +L  L 
Sbjct: 125 FRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 326 LFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNF 379
           L  N ++  + P     +  L+   +  N L   LP    + L  L    +  N +
Sbjct: 184 LHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 32/232 (13%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
            + + ++GN  +    A  R C NL  +    N        AF     L+ + LS N  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 478 GEISPD-WGECRNLSNLQLDRNRISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTD-LGK 534
             + P  +     L  L LDR  +   +       L  L  L L  N L   +P D    
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           L  L +L L  N ++    ++   L  L  L L  N++   V      F  L  L     
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA--FRDLGRLM---- 204

Query: 595 DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQL 645
                              L L +N+LS  +P E L  L +L+ L L+ N  
Sbjct: 205 ------------------TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 6/187 (3%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNF-LETPDWSKFSSMPSLTHLGLYL 62
              L  L ++ N L        + L  +  LDL  N  L + D + F  +  L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 63  NELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
             L  E    +      L YL L  N L   +P+  F +LG L +L L  N+    +   
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171

Query: 122 V-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
               L +L  L L  N+ +   P     +  L  + LF N+ +     +L  L+ LQ+L 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 181 LRMNALN 187
           L  N   
Sbjct: 232 LNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 8/216 (3%)

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
           ++P        +   +    N  S        +   L  L ++ N       A     + 
Sbjct: 25  AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 442 LNRVRFDGNQFTGNITK-AFGVHPRLDFIRLSGNQFVGEISPDW-GECRNLSNLQLDRNR 499
           L ++    N    ++    F    RL  + L       E+ P        L  L L  N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 500 ISGGIPAE-LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISN 558
           +   +P +   +L  L  L L  N ++         L  L  L L  N +    P +  +
Sbjct: 141 LQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           L  L  L L  N L+    + L     L  L L+ N
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 8/214 (3%)

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQL 326
           G+    Q +FL+ N  S    +      +L  L L  N L+  I       L  L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 327 FSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIP 384
             N    ++ P     +  L    ++   L  EL   +   L  L    +  N    ++P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 385 GDFGKFSPSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFTGSLPACLRNCSNLN 443
            D  +   +L ++    N  S  +P     G  +L+ L ++ N      P   R+   L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
            +    N  +   T+A      L ++RL+ N +V
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 5/136 (3%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L  L  L +    L    P     L  ++YL L  N L+      F  + +LTHL L+ 
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 63  NELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
           N ++   P        +L  L L  N+++  +    F +LG+L  L L  N     L   
Sbjct: 163 NRIS-SVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS-ALPTE 219

Query: 122 V-SKLSNLIDLRLATN 136
             + L  L  LRL  N
Sbjct: 220 ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            L+ LQYL + DN L  A+P      L  + +L L GN + +     F  + SL  L L+
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 62  LNELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
            N +              L  L L  N LS  +P      L  L+YL L +N + 
Sbjct: 186 QNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 15/210 (7%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFI-LTCRNLTYLDLSLNKL 89
           + LDL  N L       F S P L  L L   E+  +E  ++  L+  +L+ L L+ N +
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPI 88

Query: 90  SGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKF-SGPIPGDIG 147
              +    F+ L  L+ L   E      L       L  L +L +A N   S  +P    
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 148 SMSNLQLVELFNNSFTGQIP----SSLGQLKNLQ-HLDLRMNALNYTIPPELGLCTNLSY 202
           +++NL+ ++L +N     I       L Q+  L   LDL +N +N  I P       L  
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
           LAL  NQL          L+ L  + L  N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 45/189 (23%), Positives = 71/189 (37%), Gaps = 13/189 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQL-SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
             ELQ L +    +   I      SL  +  L L GN +++     FS + SL  L    
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 63  NELT-LEFPSF-ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
             L  LE      L    L  L+++ N +        F+NL  LE+L+L+ N+ Q  +  
Sbjct: 110 TNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 121 NV-SKLSNL----IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKN 175
                L  +    + L L+ N  +  I         L+ + L  N           +L +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 176 LQHLDLRMN 184
           LQ + L  N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 14/212 (6%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATN 136
           +   LDLS N L  L     F +  +L+ L+L+  + Q  +       LS+L  L L  N
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL-- 194
                  G    +S+LQ +     +        +G LK L+ L++  N +     PE   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 195 GLCTNLSYLALAVNQL---SGGLPLSLSNLSKLN-DLGLSDNFLSGEISANLIGNWTELE 250
            L TNL +L L+ N++          L  +  LN  L LS N ++  I          L+
Sbjct: 147 NL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE-IRLK 203

Query: 251 SLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRN 281
            L +  N  + ++P  I   LT LQ ++L+ N
Sbjct: 204 ELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 9e-19
 Identities = 44/188 (23%), Positives = 66/188 (35%), Gaps = 13/188 (6%)

Query: 488 RNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSN 545
             L  L L R  I   I      +L+ L  L L  N +   +       L  L  L    
Sbjct: 52  PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109

Query: 546 NHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL---NLSHN---DLSGE 599
            +L       I +L  L  L++++N +          F  L +L   +LS N    +   
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
               L  + +L   LDLS N ++  I     K   L+ L L  NQL          + SL
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226

Query: 660 RSVDFSDN 667
           + +    N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 15/212 (7%)

Query: 175 NLQHLDLRMNALNYTIPPE-LGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF 233
           + ++LDL  N L   +          L  L L+  ++      +  +LS L+ L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNF-SGPIPSEI 291
           +   ++       + L+ L     +   ++     G L  L+ L +  N   S  +P   
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 292 EKLTSLENLDLSGNQLSGTIPP-TLWNLTNL----LSLQLFSNNLSGTIPPEIGSMASLV 346
             LT+LE+LDLS N++  +I    L  L  +    LSL L  N ++  I P       L 
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 347 AFDVNTNQLHGELPENI-SRLVKLNKFSVFTN 377
              ++TNQL   +P+ I  RL  L K  + TN
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 45/212 (21%), Positives = 77/212 (36%), Gaps = 13/212 (6%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMN 184
            +  +L L+ N           S   LQ+++L        I       L +L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 185 ALNYTIPPEL-GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
            +  ++        ++L  L      L+      + +L  L +L ++ N +         
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 244 GNWTELESLQIQNNSFMGNIPPEI-GLLTKLQY----LFLYRNNFSGPIPSEIEKLTSLE 298
            N T LE L + +N    +I      +L ++      L L  N  +  I     K   L+
Sbjct: 146 SNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLK 203

Query: 299 NLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSN 329
            L L  NQL  ++P      LT+L  + L +N
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 24/181 (13%)

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
            +P    +   L    L  N L            +L  L+LS   +      +  +L+ L
Sbjct: 25  NLPF---STKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 563 AYLDLSNNKLT---GDVPQELGRFDKLLSLNLSHNDLSGEIPSNL-GNLFVLQYMLDLSS 618
           + L L+ N +          L     L  L     +L+  + +   G+L  L+  L+++ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLS---SLQKLVAVETNLA-SLENFPIGHLKTLKE-LNVAH 133

Query: 619 NSLSGTIPQE--LGKLTSLEILNLSRNQLSGRIPA----SLSSMISLR-SVDFSDNELTE 671
           N +  +         LT+LE L+LS N++   I       L  M  L  S+D S N +  
Sbjct: 134 NLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 672 L 672
           +
Sbjct: 192 I 192

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 41/196 (20%), Positives = 59/196 (30%), Gaps = 15/196 (7%)

Query: 384 PGDFGKFSPSLINVSFSNNSFSGELPHELCSGF-ALEELTVNGNNFTGSLPA-CLRNCSN 441
              F  F P L  +  S       +          L  L + GN    SL        S+
Sbjct: 45  SYSFFSF-PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSS 101

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ---LDRN 498
           L ++               G    L  + ++ N       P      NL+NL+   L  N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSN 159

Query: 499 RI---SGGIPAELGNLTRLGV-LSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPK 554
           +I          L  +  L + L L  N +   I     K ++L  L L  N L      
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 555 SISNLTELAYLDLSNN 570
               LT L  + L  N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 10/185 (5%)

Query: 417 ALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ 475
            L+ L ++      ++     ++ S+L+ +   GN        AF     L  +      
Sbjct: 53  ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 476 FVGEISPD-WGECRNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDLG 533
               +     G  + L  L +  N I      E   NLT L  L L SN++     TDL 
Sbjct: 112 LA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 534 KLVKL----FNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL 589
            L ++     +L+LS N +   I         L  L L  N+L         R   L  +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 590 NLSHN 594
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLY 61
            LS LQ L   + NL     F +  L+ ++ L++  N +++      FS++ +L HL L 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 62  LNELT-LEFPSF----ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG 116
            N++  +          +   NL+ LDLSLN ++  I    F  + +L+ L L  NQ + 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNF-IQPGAFKEI-RLKELALDTNQLKS 214

Query: 117 KLSPNVSKLSNLIDLRLATN 136
                  +L++L  + L TN
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQ--LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLT--- 56
           G L  L+ L+V  N +  +       S+L  + +LDL  N +++   +    +  +    
Sbjct: 121 GHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 57  -HLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
             L L LN +             L  L L  N+L   +P+ +F  L  L+ + L  N + 
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 568 SNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQ 627
                   +P  L       +L+LS N L      +  +   LQ  LDLS   +  TI  
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQV-LDLSRCEIQ-TIED 69

Query: 628 EL-GKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
                L+ L  L L+ N +      + S + SL+ +   +  L  L 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 59/184 (32%), Positives = 80/184 (43%), Gaps = 15/184 (8%)

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
           + + L L  N +     A L   TRL  L+LD  ELT K+  D G L  L  L+LS+N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL 89

Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS---LNLSHNDLSGEIPSNL- 604
              +P     L  L  LD+S N+LT  +P   G    L     L L  N+L   +P  L 
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 605 GNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQLSGRIPASLSSMISLRSVD 663
                L+  L L++N+L+  +P  L   L +L+ L L  N L   IP        L    
Sbjct: 145 TPTPKLEK-LSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 664 FSDN 667
              N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 7/181 (3%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
            +   L + +N L       L    ++  L+L    L         ++P L  L L  N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ 88

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-S 123
           L    P    T   LT LD+S N+L+ L P      LG+L+ L L  N+ +  L P + +
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
               L  L LA N  +    G +  + NL  + L  NS    IP        L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 184 N 184
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 47/206 (22%), Positives = 69/206 (33%), Gaps = 33/206 (16%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR 499
            +   +    N            + RL  + L   +         G    L  L L  N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQ 88

Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKSI-S 557
           +   +P     L  L VL +  N LT  +P      L +L  L L  N L   +P  + +
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLS 617
              +L  L L+NN LT ++P   G  + L +L+                       L L 
Sbjct: 146 PTPKLEKLSLANNNLT-ELPA--GLLNGLENLD----------------------TLLLQ 180

Query: 618 SNSLSGTIPQELGKLTSLEILNLSRN 643
            NSL  TIP+       L    L  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 49/182 (26%), Positives = 69/182 (37%), Gaps = 9/182 (4%)

Query: 53  PSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
              T L L  N L     + ++    LT L+L   +L+ L   ++   L  L  L+L+ N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHN 87

Query: 113 QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ 172
           Q Q  L      L  L  L ++ N+ +    G +  +  LQ + L  N      P  L  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 173 LKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS 230
              L+ L L  N L   +P  L  GL  NL  L L  N L   +P        L    L 
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGL-ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 231 DN 232
            N
Sbjct: 204 GN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 57/232 (24%), Positives = 84/232 (36%), Gaps = 41/232 (17%)

Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
           +   ++     L   +PP   L  + + L L+ N L      +L   ++L  L L     
Sbjct: 11  SHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKL 294
                        EL  L               G L  L  L L  N     +P   + L
Sbjct: 66  -------------ELTKL------------QVDGTLPVLGTLDLSHNQLQS-LPLLGQTL 99

Query: 295 TSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNT 352
            +L  LD+S N+L+ ++P   L  L  L  L L  N L  T+PP +      L    +  
Sbjct: 100 PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157

Query: 353 NQLHGELPENI-SRLVKLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNN 402
           N L  ELP  + + L  L+   +  N+   +IP G FG  S  L       N
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG--SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 9e-14
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 17/168 (10%)

Query: 510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN 569
            +     ++ D   LT  +P DL        L+LS N L      ++   T L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 570 NKLTGDVPQELGRFDKLLSL---NLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIP 626
            +LT     +L     L  L   +LSHN L   +P     L  L   LD+S N L+ ++P
Sbjct: 65  AELT-----KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV-LDVSFNRLT-SLP 116

Query: 627 QEL-GKLTSLEILNLSRNQLSGRIPASL-SSMISLRSVDFSDNELTEL 672
                 L  L+ L L  N+L   +P  L +    L  +  ++N LTEL
Sbjct: 117 LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L  L  L V  N L       L  L +++ L L GN L+T      +  P L  L L  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158

Query: 64  ELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
            LT E P+ +   L   NL  L L  N L   IP+  F +   L +  L  N + 
Sbjct: 159 NLT-ELPAGLLNGLE--NLDTLLLQENSLYT-IPKGFFGSH-LLPFAFLHGNPWL 208

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 555 SISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYML 614
            +S +     ++     LT  +P +L        L+LS N L     + L     L   L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQ-L 60

Query: 615 DLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           +L    L+  +    G L  L  L+LS NQL   +P    ++ +L  +D S N LT L
Sbjct: 61  NLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 54/278 (19%), Positives = 72/278 (25%), Gaps = 82/278 (29%)

Query: 294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353
           + S   ++     L+  +PP L    +   L L  N L  T                 T 
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLA--------TLMPYTR 56

Query: 354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
                L      L KL                                            
Sbjct: 57  LTQLNLDRA--ELTKLQVDGTLPV------------------------------------ 78

Query: 414 SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSG 473
               L  L ++ N    SLP   +    L  +    N+ T     A      L  + L G
Sbjct: 79  ----LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL- 532
           N+              L  L           P  L    +L  LSL +N LT ++P  L 
Sbjct: 134 NE--------------LKTLP----------PGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 533 GKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNN 570
             L  L  L L  N L   IPK       L +  L  N
Sbjct: 169 NGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.6 bits (233), Expect = 6e-21
 Identities = 61/306 (19%), Positives = 122/306 (39%), Gaps = 23/306 (7%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
           N   +    + ++  +      +L  +  L+             V  L+NLI L L  N+
Sbjct: 20  NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQ 74

Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
            +   P  + +++ +  +EL  N       S++  L++++ LDL    +  T    L   
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQI--TDVTPLAGL 128

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
           +NL  L L +NQ++   PL+   L+ L  L + +  +S +++   + N ++L +L+  +N
Sbjct: 129 SNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDN 183

Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317
             + +I P +  L  L  + L  N  S    S +   ++L  + L+   ++      ++ 
Sbjct: 184 K-ISDISP-LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITN---QPVFY 236

Query: 318 LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN 377
             NL+   +        I P   S     A    T  L   +        +   F   T 
Sbjct: 237 NNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTV 296

Query: 378 NFSGSI 383
            FSG++
Sbjct: 297 PFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
             ++    +N T ++     +   +  +   G   T  I +       L  + L  NQ +
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQ-I 75

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
            +++P       ++ L+L  N +     + +  L  +  L L S ++T   P  L  L  
Sbjct: 76  TDLAPL-KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           L  L L  N +T  I   ++ LT L YL + N +++   P  L    KL +L    N +S
Sbjct: 131 LQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMI 657
               S L +L  L   + L +N +S   P  L   ++L I+ L+   ++ +     ++++
Sbjct: 187 DI--SPLASLPNLIE-VHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 658 SLRSVDFSDNELTE 671
               V         
Sbjct: 242 VPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 479 EISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKL 538
            I PD     N   +   ++ ++  +     +L  +  LS     +T  I   +  L  L
Sbjct: 11  VIFPD-PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNL 65

Query: 539 FNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG 598
             L L +N +T   P  + NLT++  L+LS N L       +     + +L+L+   ++ 
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD 121

Query: 599 EIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMIS 658
              + L  L  LQ  L L  N ++   P  L  LT+L+ L++   Q+S   P  L+++  
Sbjct: 122 --VTPLAGLSNLQV-LYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 659 LRSVDFSDNELTEL 672
           L ++   DN+++++
Sbjct: 175 LTTLKADDNKISDI 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            DL  +  LS +   +       +  L  +  L+L  N +   D +   ++  +T L L 
Sbjct: 38  ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT--DLAPLKNLTKITELELS 93

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N L     S I   +++  LDL+  +++ + P      L  L+ L L  NQ        
Sbjct: 94  GNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISP 146

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           ++ L+NL  L +   + S   P  + ++S L  ++  +N  +    S L  L NL  + L
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHL 202

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
           + N +  +    L   +NL  + L    ++       +NL   N +          I+  
Sbjct: 203 KNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP---IAPA 257

Query: 242 LIGNWTELESLQIQNNS 258
            I +     S  +  N 
Sbjct: 258 TISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
           L  L +  N  T   P  L+N + +  +   GN        A      +  + L+  Q +
Sbjct: 65  LIGLELKDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQ-I 119

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
            +++P  G   NL  L LD N+I+   P  L  LT L  LS+ + +++   P  L  L K
Sbjct: 120 TDVTPLAG-LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           L  L   +N ++ +I   +++L  L  + L NN+++      L     L  + L++  ++
Sbjct: 175 LTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTIT 230

Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEI 637
            +      NL V   +   S   ++     + G   S  +
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 17/235 (7%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L+ L  L + DN +    P  L +L K+  L+L GN L+    S  + + S+  L L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
              ++T    + +    NL  L L LN+++ + P      L  L+YL++   Q    L+P
Sbjct: 115 TSTQIT--DVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS-DLTP 168

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
            ++ LS L  L+   NK S   P  + S+ NL  V L NN  +    S L    NL  + 
Sbjct: 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVT 223

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235
           L    +              + +           P ++S+        L+ N  S
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 55/320 (17%), Positives = 108/320 (33%), Gaps = 68/320 (21%)

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAF 348
                L +   +    + ++     T  +L  + +L  F   ++ TI   +  + +L+  
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68

Query: 349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 408
           ++  NQ+      +++ L  L K                                     
Sbjct: 69  ELKDNQI-----TDLAPLKNLTK------------------------------------- 86

Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
                    + EL ++GN    ++ A +    ++  +     Q T            L  
Sbjct: 87  ---------ITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQV 133

Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKI 528
           + L  NQ +  ISP      NL  L +   ++S   P  L NL++L  L  D N+++  I
Sbjct: 134 LYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DI 188

Query: 529 PTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS 588
              L  L  L  ++L NN ++   P  ++N + L  + L+N  +T               
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 589 L-NLSHNDLSGEIPSNLGNL 607
           +   S   ++    S+ G  
Sbjct: 246 VKGPSGAPIAPATISDNGTY 265

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 35/233 (15%)

Query: 168 SSLGQLKNLQHLDLRMNALNYTIP--------------------PELGLCTNLSYLALAV 207
                L N   +    + +  T+                       +    NL  L L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI 267
           NQ++   P  L NL+K+ +L LS N L   +SA  I     +++L + +   + ++ P +
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQ-ITDVTP-L 125

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327
             L+ LQ L+L  N  +    S +  LT+L+ L +   Q+S  + P L NL+ L +L+  
Sbjct: 126 AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKAD 181

Query: 328 SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFS 380
            N +S  I P + S+ +L+   +  NQ+       ++    L   ++     +
Sbjct: 182 DNKIS-DISP-LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 59/343 (17%), Positives = 115/343 (33%), Gaps = 75/343 (21%)

Query: 218 LSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF 277
              L+    +    + ++  ++     +   + +L          I   +  L  L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLE 69

Query: 278 LYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPP 337
           L  N  +    + ++ LT +  L+LSGN L   +   +  L ++ +L L S  ++   P 
Sbjct: 70  LKDNQITD--LAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 338 EIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINV 397
            +  +++L    ++ NQ+      NIS L  L                            
Sbjct: 125 -LAGLSNLQVLYLDLNQI-----TNISPLAGLTN-------------------------- 152

Query: 398 SFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT 457
                               L+ L++     +  L   L N S L  ++ D N+ + +I+
Sbjct: 153 --------------------LQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DIS 189

Query: 458 KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVL 517
                 P L  + L  NQ + ++SP      NL  + L    I+        NL      
Sbjct: 190 -PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--- 243

Query: 518 SLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
               N + G     +       N   ++ +LT  +   I+N++
Sbjct: 244 ----NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.8 bits (235), Expect = 2e-20
 Identities = 56/312 (17%), Positives = 108/312 (34%), Gaps = 17/312 (5%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
             +E    ++   ++  A+    + L  +  +    + ++         +P++T L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 74

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+LT   P  +   +NL +L L  NK+  L       +L KL+ L+L  N     ++  +
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGIS-DING-L 127

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
             L  L  L L  NK +      +  ++ L  + L +N  +      L  L  LQ+L L 
Sbjct: 128 VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLS 183

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N +  +    L    NL  L L   +         SNL   N +  +D  L      + 
Sbjct: 184 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
            G++ +                     +T  +    +    + P+         ++   +
Sbjct: 242 DGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVI 301

Query: 303 SGNQLSGTIPPT 314
                +GT    
Sbjct: 302 KTKVEAGTRITA 313

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.6 bits (232), Expect = 5e-20
 Identities = 57/322 (17%), Positives = 111/322 (34%), Gaps = 45/322 (13%)

Query: 76  CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135
                  +L    ++  +       L  ++ +    +  +  +   +  L N+  L L  
Sbjct: 20  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 74

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
           NK        +  +  L                    LKNL  L L  N +   +   L 
Sbjct: 75  NK--------LTDIKPL------------------TNLKNLGWLFLDENKIK-DLSS-LK 106

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ 255
               L  L+L  N +S    L   +L +L  L L +N ++ +I+   +   T+L++L ++
Sbjct: 107 DLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLE 161

Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL 315
           +N  + +I P +  LTKLQ L+L +N+ S      +  L +L+ L+L   +         
Sbjct: 162 DNQ-ISDIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 316 WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVF 375
            NL    +++    +L    P  I         +V  +        +      +      
Sbjct: 218 SNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT-IGKA 274

Query: 376 TNNFSGSIPGDFGKFSPSLINV 397
              F G +     +      +V
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDV 296

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 1e-16
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
           +         I    P            +L    +T  +     +L  +  +  +N+ + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFV 609
             + + I  L  +  L L+ NKLT   P  L     L  L L  N +  ++ S+L +L  
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKDLKK 110

Query: 610 LQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
           L+  L L  N +S      L  L  LE L L  N+++      LS +  L ++   DN++
Sbjct: 111 LKS-LSLEHNGISDING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI 165

Query: 670 TEL 672
           +++
Sbjct: 166 SDI 168

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 20/260 (7%)

Query: 168 SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDL 227
                       +L+  ++  T         ++  +    + +       +  L  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 70

Query: 228 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPI 287
            L+ N L+ +I    + N   L  L +  N    ++   +  L KL+ L L  N  S   
Sbjct: 71  FLNGNKLT-DIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS--D 123

Query: 288 PSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVA 347
            + +  L  LE+L L  N+++  I   L  LT L +L L  N +S  I P +  +  L  
Sbjct: 124 INGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQN 179

Query: 348 FDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE 407
             ++ N +       ++ L  L+   +F+                    V  ++ S    
Sbjct: 180 LYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV-VPNTVKNTDGSLVT- 235

Query: 408 LPHELCSGFALEELTVNGNN 427
            P  +      E+  V  + 
Sbjct: 236 -PEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 18/284 (6%)

Query: 218 LSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF 277
               ++     L    ++  ++         ++ +   N+    ++   I  L  +  LF
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLF 71

Query: 278 LYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPP 337
           L  N  +  I   +  L +L  L L  N++   +   L +L  L SL L  N +S  I  
Sbjct: 72  LNGNKLTD-I-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING 126

Query: 338 EIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINV 397
            +  +  L +  +  N++       +SRL KL+  S+  N  S  I          L N+
Sbjct: 127 -LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGL-TKLQNL 180

Query: 398 SFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT 457
             S N  S +L   L     L+ L +              N    N V+           
Sbjct: 181 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 458 KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
            +         ++    +F  E+S  + +   +   +   +   
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 3e-13
 Identities = 55/304 (18%), Positives = 106/304 (34%), Gaps = 67/304 (22%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
             +     L + + +  +     +L S++ +  + + +  ++   +  L N+  L L  N
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 75

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            L+  I P + ++ +L    ++ N++     +++S L  L K                  
Sbjct: 76  KLT-DIKP-LTNLKNLGWLFLDENKI-----KDLSSLKDLKK------------------ 110

Query: 390 FSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG 449
                                       L+ L++  N  +  +   L +   L  +    
Sbjct: 111 ----------------------------LKSLSLEHNGIS-DING-LVHLPQLESLYLGN 140

Query: 450 NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELG 509
           N+ T +IT       +LD + L  NQ + +I P       L NL L +N IS      L 
Sbjct: 141 NKIT-DIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHIS--DLRALA 194

Query: 510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN 569
            L  L VL L S E   K       LV    +  ++  L    P+ IS+  +    ++  
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKW 252

Query: 570 NKLT 573
           +   
Sbjct: 253 HLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 1e-12
 Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 67/300 (22%)

Query: 297 LENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
           +         +   I P        +   L   +++  +      + S+     N + + 
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 357 GELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
             + + I  L  + K  +  N  +  I         +L N                    
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT-DIKPL-----TNLKN-------------------- 88

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
            L  L ++ N     L + L++   L  +  + N  +                       
Sbjct: 89  -LGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS----------------------- 122

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV 536
             +I+        L +L L  N+I+      L  LT+L  LSL+ N+++  I   L  L 
Sbjct: 123 --DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLT 175

Query: 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
           KL NL LS NH++ ++ ++++ L  L  L+L + +                ++  +   L
Sbjct: 176 KLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 15/202 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            +L  L +L + +N +       L  L+K++ L L  N +   D +    +P L  L L 
Sbjct: 84  TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLG 139

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N++T    + +     L  L L  N++S ++P      L KL+ L L++N     L   
Sbjct: 140 NNKIT--DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRA- 192

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG----QIPSSLGQLKNLQ 177
           ++ L NL  L L + +          ++     V+  + S              +     
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

Query: 178 HLDLRMNALNYTIPPELGLCTN 199
           HL    N +++     + +   
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKA 274

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
           ++ + L +  N L+         L K+R L L  N L+T     F  + +L  L +  N+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 65  LTLEFPSFILTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
           L    P  +     NL  L L  N+L  L P R+F +L KL YL+L  N+ Q  L   V 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
            KL++L +LRL  N+      G    ++ L+ ++L NN        +   L+ L+ L L+
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 183 MN 184
            N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATN 136
           +   LDL  NKLS L P + F  L KL  L L +N+ Q  L   +  +L NL  L +  N
Sbjct: 38  DTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNYTIPPEL- 194
           K      G    + NL  + L  N     +P  +   L  L +L L  N L  ++P  + 
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 195 -GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQ 253
             L T+L  L L  NQL      +   L++L  L L +N L   +      +  +L+ LQ
Sbjct: 154 DKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211

Query: 254 IQNN 257
           +Q N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.1 bits (206), Expect = 9e-18
 Identities = 60/205 (29%), Positives = 78/205 (38%), Gaps = 33/205 (16%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTC-RNLTYLDLSLNKLS 90
           + LDL  N L +     F  +  L  L L  N+L    P+ I    +NL  L ++ NKL 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 91  GLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSM 149
            L P  +F  L  L  L L  NQ +  L P V   L+ L  L L  N             
Sbjct: 99  AL-PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN------------- 143

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAV 207
              +L  L    F          L +L+ L L  N L   +P      L T L  L L  
Sbjct: 144 ---ELQSLPKGVFDK--------LTSLKELRLYNNQLK-RVPEGAFDKL-TELKTLKLDN 190

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDN 232
           NQL      +  +L KL  L L +N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 13/185 (7%)

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNH 547
           +   L L  N++S         LT+L +L L+ N+L   +P  +  +L  L  L +++N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 548 LTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLS---LNLSHNDLSGEIPSN 603
           L   +P  +   L  LA L L  N+L   +P     FD L     L+L +N+L   +P  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 604 L-GNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSV 662
           +   L  L+  L L +N L         KLT L+ L L  NQL      +  S+  L+ +
Sbjct: 152 VFDKLTSLKE-LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 663 DFSDN 667
              +N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 11/193 (5%)

Query: 189 TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTE 248
            IP    +  +   L L  N+LS     +   L+KL  L L+DN L   + A +      
Sbjct: 30  AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 249 LESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQ 306
           LE+L + +N     +P  +   L  L  L L RN     +P  + + LT L  L L  N+
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNE 144

Query: 307 LSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENIS 364
           L  ++P  ++  LT+L  L+L++N L   +P      +  L    ++ NQL         
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 365 RLVKLNKFSVFTN 377
            L KL    +  N
Sbjct: 203 SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAV 207
           ++ + ++L +N  +     +  +L  L+ L L  N L  T+P  +   L  NL  L +  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKEL-KNLETLWVTD 94

Query: 208 NQLSGGLPLSL-SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266
           N+L   LP+ +   L  L +L L  N L   +   +  + T+L  L +  N    ++P  
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPK- 150

Query: 267 IGL---LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLS 323
            G+   LT L+ L LY N          +KLT L+ L L  NQL         +L  L  
Sbjct: 151 -GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 324 LQLFSN 329
           LQL  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ---LD 496
           ++  ++    N+ +   +KAF    +L  + L+ N+    +    G  + L NL+   + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPA--GIFKELKNLETLWVT 93

Query: 497 RNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPK 554
            N++   +P  +   L  L  L LD N+L   +P  +   L KL  L+L  N L   +PK
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 555 SI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL---NLSHNDLSGEIPSNLGNLFVL 610
            +   LT L  L L NN+L   VP+  G FDKL  L    L +N L         +L  L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKR-VPE--GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 611 QYMLDLSSN 619
           +  L L  N
Sbjct: 208 KM-LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 35/216 (16%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNL 321
           IP    +    + L L  N  S        +LT L  L L+ N+L  T+P  ++  L NL
Sbjct: 31  IPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 322 LSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNF 379
            +L +  N L   +P  +   + +L    ++ NQL   LP  +   L KL   S+  N  
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 380 SGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL-RN 438
             S+P                   F   L        +L+EL +  N     +P      
Sbjct: 146 Q-SLP----------------KGVFDK-LT-------SLKELRLYNNQLK-RVPEGAFDK 179

Query: 439 CSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN 474
            + L  ++ D NQ       AF    +L  ++L  N
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL 587
           IP D         L+L +N L+    K+   LT+L  L L++NKL   +P   G F +L 
Sbjct: 35  IPADTK------KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPA--GIFKELK 85

Query: 588 SL---NLSHNDLSGEIPSNL-GNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSR 642
           +L    ++ N L   +P  +   L  L   L L  N L  ++P  +   LT L  L+L  
Sbjct: 86  NLETLWVTDNKLQ-ALPIGVFDQLVNLAE-LRLDRNQLK-SLPPRVFDSLTKLTYLSLGY 142

Query: 643 NQLSGRIPASL-SSMISLRSVDFSDNELTEL 672
           N+L   +P  +   + SL+ +   +N+L  +
Sbjct: 143 NELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 417 ALEELTVNGNNFTGSLPACL-RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQ 475
            L  L +N N    +LPA + +   NL  +    N+        F     L  +RL  NQ
Sbjct: 62  KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 476 FVGEISPD-WGECRNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDL- 532
               + P  +     L+ L L  N +   +P  +   LT L  L L +N+L  ++P    
Sbjct: 121 LK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAF 177

Query: 533 GKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNN 570
            KL +L  L L NN L      +  +L +L  L L  N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 25/110 (22%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L++L YLS+  N        +L SL               P    F  + SL  L LY 
Sbjct: 131 SLTKLTYLSLGYN--------ELQSL---------------PKGV-FDKLTSLKELRLYN 166

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
           N+L             L  L L  N+L   +PE  F +L KL+ L L EN
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 53/288 (18%), Positives = 94/288 (32%), Gaps = 21/288 (7%)

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
            N L           R+L YL   ++  + L           L+ L +   +   ++   
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 122 VSKL---SNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL-FNNSFTGQIPSSLGQL---- 173
             ++   S L +L L   + +G  P  +   +   L  L   N       + L +L    
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 174 -KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLS----NLSKLNDLG 228
              L+ L +           ++ +   LS L L+ N   G   L  +        L  L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 229 LSDNFLS--GEISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNNFSG 285
           L +  +     + + L     +L+ L + +NS             ++L  L L       
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 286 PIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSG 333
            +P  +     L  LDLS N+L     P+   L  + +L L  N    
Sbjct: 268 -VPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 50/222 (22%), Positives = 78/222 (35%), Gaps = 18/222 (8%)

Query: 465 RLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
           RL          +   +        L  L L+   ++G  P  L   T   +  L+   +
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 525 T----GKIPTDLGKLVK--LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQ 578
           +         +L + +K  L  L+++  H      + +     L+ LDLS+N   G+   
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 579 E----LGRFDKLLSLNLSHN---DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL-G 630
                  +F  L  L L +      SG   +       LQ  LDLS NSL          
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG-LDLSHNSLRDAAGAPSCD 250

Query: 631 KLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
             + L  LNLS   L  ++P  L +   L  +D S N L   
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 6e-18
 Identities = 51/268 (19%), Positives = 81/268 (30%), Gaps = 29/268 (10%)

Query: 400 SNNSFSGELPHELCSGFALEELTVNGNNFTGSLPAC---LRNCSNLNRVRFDGNQFTGNI 456
            +         ++    +L+ LTV        +      +   S L  +  +  + TG  
Sbjct: 52  VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111

Query: 457 --TKAFGVHPRLDFIRLSGNQFVGEISPDWG----ECRNLSNLQLDRNRISGGIPAELGN 510
                    P L+ + L    +    +            L  L + +         ++  
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 511 LTRLGVLSLDSNELTGKIP----TDLGKLVKLFNLNLSNNHLT---GEIPKSISNLTELA 563
              L  L L  N   G+          K   L  L L N  +    G      +   +L 
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 564 YLDLSNNKLTGDVPQELGRF-DKLLSLNLSHNDLS---GEIPSNLGNLFVLQYMLDLSSN 619
            LDLS+N L          +  +L SLNLS   L      +P+ L        +LDLS N
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL-------SVLDLSYN 284

Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSG 647
            L    P     L  +  L+L  N    
Sbjct: 285 RLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 50/276 (18%), Positives = 83/276 (30%), Gaps = 22/276 (7%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFL---ETPDWSKFSSMPSLTHL 58
           G  S    L   D   +      +     ++ L +    +         +   +  L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 59  GLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG-----KLEYLNLTENQ 113
            L   E+T   P  +L         L+L  +S    +     L       L+ L++ +  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 114 FQGKLSPNVSKLSNLIDLRLATNKFSGPIP----GDIGSMSNLQLVELFNNSFT---GQI 166
                   V     L  L L+ N   G               LQ++ L N       G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGL-CTNLSYLALAVNQLSGGLPLSLSNLSKLN 225
            +       LQ LDL  N+L            + L+ L L+   L        + LS L+
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD 280

Query: 226 DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
              LS N L             ++ +L ++ N F+ 
Sbjct: 281 ---LSYNRLD---RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 56/277 (20%), Positives = 87/277 (31%), Gaps = 22/277 (7%)

Query: 412 LCSGFALEELTVNGNNFTGSLP-ACLRNCSNLNRVRFDGNQFTGNITK---AFGVHPRLD 467
              G +LE L    +          +    +L R+     +    I            L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 468 FIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS-GGIPAELGNL-----TRLGVLSLDS 521
            + L   +  G   P   E        L+   +S     A L  L       L VLS+  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 522 NELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS----NLTELAYLDLSNNKLT---G 574
                     +     L  L+LS+N   GE     +        L  L L N  +    G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 575 DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTS 634
                     +L  L+LSHN L     +   +       L+LS   L   +P+ L     
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAK 275

Query: 635 LEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTE 671
           L +L+LS N+L  R P S   +  + ++    N   +
Sbjct: 276 LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 48/276 (17%), Positives = 86/276 (31%), Gaps = 22/276 (7%)

Query: 147 GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL---CTNLSYL 203
           G  S   L++  +        + + +  +L+ L +R   +   I          + L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 204 ALAVNQLSGGLPLSLSNLS--KLNDLGLSDNFLSGEISA-NLIGNW--TELESLQIQNNS 258
            L   +++G  P  L   +   LN L L +   +   +    +  W    L+ L I    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 259 FMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE----KLTSLENLDLSGNQ---LSGTI 311
            +     ++ +   L  L L  N   G           K  +L+ L L        SG  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 312 PPTLWNLTNLLSLQLFSNNLSGTIPPEIGS-MASLVAFDVNTNQLHGELPENISRLVKLN 370
                    L  L L  N+L            + L + +++   L        ++L  L+
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD 280

Query: 371 KFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
                + N     P       P + N+S   N F  
Sbjct: 281 ----LSYNRLDRNP--SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 35/294 (11%)

Query: 244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKL---TSLENL 300
           G  +    L+  +         +I     L+ L +        I     ++   + L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
            L   +++GT PP L   T      L   N+            S    D    +L   L 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNV------------SWATRDAWLAELQQWLK 148

Query: 361 ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPHELCSGF-- 416
             +  L             S +   +  +  P+L  +  S+N   GE  L   LC     
Sbjct: 149 PGLKVL-------SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 417 ALEELTVNGNNFT---GSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHP-RLDFIRLS 472
            L+ L +         G   A       L  +    N             P +L+ + LS
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
                       G    LS L L  NR+    P+    L ++G LSL  N    
Sbjct: 262 FTGLK---QVPKGLPAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 14/177 (7%)

Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS---NLTELAYL 565
           G  +   +L     E      TD+ K + L  L +    +   I         ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 566 DLSNNKLTGDVPQELGRFD--KLLSLNLSHNDLSGEIPSNLGNLFVLQYM----LDLSSN 619
            L N ++TG  P  L       L  LNL +   +    + L  L          L ++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQA 159

Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSGRIP----ASLSSMISLRSVDFSDNELTEL 672
                  +++    +L  L+LS N   G              +L+ +   +  +   
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 8/160 (5%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
           +LTY+ L+   ++ L           ++ L +         +P +S LSNL  LR+    
Sbjct: 45  SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKD 99

Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
            +     ++  +++L L+++ +++    I + +  L  +  +DL  N     I P L   
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTL 158

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE 237
             L  L +  + +       + +  KLN L      + G+
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
           +        +   S    ++ + ++ L  + L++  ++ +++   I     ++ L I N 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNI 76

Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317
               N  P I  L+ L+ L +   + +      +  LTSL  LD+S +    +I   +  
Sbjct: 77  HA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 318 LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN 377
           L  + S+ L  N     I P + ++  L + ++  + +H      I    KLN+   F+ 
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

Query: 378 NFSG 381
              G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)

Query: 487 CRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
             N+ +L ++    +   P  +  L+ L  L +   ++T     +L  L  L  L++S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 547 HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGN 606
                I   I+ L ++  +DLS N    D+   L    +L SLN+  + +       + +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIED 179

Query: 607 LFVLQYMLDLSSNSLSG 623
              L   L   S ++ G
Sbjct: 180 FPKLNQ-LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 11/187 (5%)

Query: 99  TNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158
           +         L ++      +   +++++L  + LA    +  + G I    N++ + + 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTG-IEYAHNIKDLTIN 74

Query: 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSL 218
           N   T    + +  L NL+ L +    +     P L   T+L+ L ++ +     +   +
Sbjct: 75  NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 219 SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 278
           + L K+N + LS N    +I    +    EL+SL IQ +    +    I    KL  L+ 
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV-HDYRG-IEDFPKLNQLYA 188

Query: 279 YRNNFSG 285
           +     G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
           +  + ++        +P      NL  L++    ++      L  LT L +L +  +   
Sbjct: 68  IKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 526 GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
             I T +  L K+ +++LS N    +I   +  L EL  L++  + +       +  F K
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 586 LLSLNLSHNDLSGE 599
           L  L      + G+
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
              ++ L++ + +     P  +S L  +  L + G  + +      S + SLT L +  +
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
                  + I T   +  +DLS N     I       L +L+ LN+  +         + 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-DYRG-IE 178

Query: 124 KLSNLIDLRLATNKFSG 140
               L  L   +    G
Sbjct: 179 DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
                N  L  +        + + +  L Y+ L+N  +T D+   +     +  L +++ 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNI 76

Query: 595 DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLS 654
             +    + +  L  L+  L +    ++      L  LTSL +L++S +     I   ++
Sbjct: 77  HATN--YNPISGLSNLER-LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 655 SMISLRSVDFSDN 667
           ++  + S+D S N
Sbjct: 134 TLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 28/210 (13%), Positives = 66/210 (31%), Gaps = 35/210 (16%)

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSG 304
            +    +  +  +S           +  L Y+ L   N +    + IE   ++++L ++ 
Sbjct: 21  TFKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 305 NQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS 364
              +   P  +  L+NL  L++   +++    P +  + SL   D++ +     +   I+
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 365 RLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVN 424
            L K+N   +  N     I                                  L+ L + 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-------------LKTLP-------------ELKSLNIQ 167

Query: 425 GNNFTGSLPACLRNCSNLNRVRFDGNQFTG 454
            +         + +   LN++        G
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             LS L+ L +   ++       LS L  +  LD+  +  +    +K +++P +  + L 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113
            N   +     + T   L  L++  + +          +  KL  L      
Sbjct: 145 YNGA-ITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
           +++LT+N  + T   P  +   SNL R+R  G   T +          L  + +S +   
Sbjct: 68  IKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
             I         ++++ L  N     I   L  L  L  L++  + +       +    K
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 538 LFNLNLSNNHLTGE 551
           L  L   +  + G+
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 24/213 (11%), Positives = 57/213 (26%), Gaps = 56/213 (26%)

Query: 290 EIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFD 349
              ++ SL  + L+   ++      +    N+  L + + + +   P  I  +++L    
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94

Query: 350 VNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP 409
           +    +  +   N+S L  L                                        
Sbjct: 95  IMGKDVTSDKIPNLSGLTSL---------------------------------------- 114

Query: 410 HELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFI 469
                      L ++ +    S+   +     +N +    N    +I       P L  +
Sbjct: 115 ---------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSL 164

Query: 470 RLSGNQFVGEISPDWGECRNLSNLQLDRNRISG 502
            +  +  V +      +   L+ L      I G
Sbjct: 165 NIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIGG 195

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 74/440 (16%), Positives = 138/440 (31%), Gaps = 64/440 (14%)

Query: 295 TSLENLDLSGNQLSGT-IPPTLWNLTNLLSLQLFSNNLSGT----IPPEIGSMASLVAFD 349
             +++LD+   +LS       L  L     ++L    L+      I   +    +L   +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 350 VNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFG--------KFSPSLINVSFSN 401
           + +N+L       + + ++     +   +         G        +  P+L  +  S+
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 402 NSFSGELPHELCSGF-----ALEELTVNGNNFT----GSLPACLRNCSNLNRVRFDGNQF 452
           N         LC G       LE+L +   + +      L + LR   +   +    N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 453 TGNITKAFGV-----HPRLDFIRLSGNQF----VGEISPDWGECRNLSNLQLDRNRISGG 503
                +           +L+ ++L           ++        +L  L L  N++   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 504 -----IPAELGNLTRLGVLSLDSNELTGK----IPTDLGKLVKLFNLNLSNNHLTGEIPK 554
                 P  L   +RL  L +    +T K    +   L     L  L+L+ N L  E  +
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 555 SISNL-----TELAYLDLSNNKLTGDVPQELG----RFDKLLSLNLSHNDLSGEIPSNLG 605
            +         +L  L + +   T            +   LL L +S+N L       L 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 606 -----NLFVLQYMLDLSSNSLS----GTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM 656
                   VL+  L L+   +S     ++   L    SL  L+LS N L       L   
Sbjct: 363 QGLGQPGSVLRV-LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 657 I-----SLRSVDFSDNELTE 671
           +      L  +   D   +E
Sbjct: 422 VRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 83/452 (18%), Positives = 141/452 (31%), Gaps = 66/452 (14%)

Query: 271 TKLQYLFLYRNNFSGP-IPSEIEKLTSLENLDLSGNQLSGT----IPPTLWNLTNLLSLQ 325
             +Q L +     S       +  L   + + L    L+      I   L     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 326 LFSNNLSGTIPPEIGSM-----ASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFS 380
           L SN L       +          +    +    L G     +S  ++    ++   + S
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLS 121

Query: 381 GSIPGDFG---------KFSPSLINVSFSNNSFSGELPHELCSGFA----LEELTVNGNN 427
            ++ GD G              L  +     S S      L S        +ELTV+ N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 428 FTGS----LPACLR-NCSNLNRVRFDGNQFT----GNITKAFGVHPRLDFIRLSGNQF-- 476
              +    L   L+ +   L  ++ +    T     ++         L  + L  N+   
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 477 --VGEISPDWGEC-RNLSNLQLDRNRIS----GGIPAELGNLTRLGVLSLDSNELTGKIP 529
             + E+ P        L  L +    I+    G +   L     L  LSL  NEL  +  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 530 TDLGKLVKLFN-----LNLSNNHLTGE----IPKSISNLTELAYLDLSNNKLTGDVPQEL 580
             L + +         L + +   T          ++    L  L +SNN+L     +EL
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 581 GRF-----DKLLSLNLSHNDLSGE----IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK 631
            +        L  L L+  D+S      + + L     L+  LDLS+N L      +L +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE-LDLSNNCLGDAGILQLVE 420

Query: 632 L-----TSLEILNLSRNQLSGRIPASLSSMIS 658
                   LE L L     S  +   L ++  
Sbjct: 421 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 85/486 (17%), Positives = 154/486 (31%), Gaps = 107/486 (22%)

Query: 31  VRYLDLGGNFLETPDWSKFSS-MPSLTHLGLYLNELTLE----FPSFILTCRNLTYLDLS 85
           ++ LD+    L    W++    +     + L    LT        S +     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 86  LNKLSG----LIPERLFTNLGKLEYLNLTENQFQGK----LSPNVSKLSNLIDLRLATNK 137
            N+L       + + L T   K++ L+L      G     LS  +  L  L +L L+ N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 138 FSGPIPGDIG----------SMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRM 183
                 GD G              L+ ++L   S +      + S L    + + L +  
Sbjct: 125 L-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 184 NALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE----IS 239
           N +N                   V  L  GL  S   L  L    L    ++ +    + 
Sbjct: 180 NDINEA----------------GVRVLCQGLKDSPCQLEALK---LESCGVTSDNCRDLC 220

Query: 240 ANLIGNWTELESLQIQNNSFMGN-----IPPEIGLLTKLQYLFLYRNNFSGP----IPSE 290
             +      L  L + +N           P  +   ++L+ L+++    +      +   
Sbjct: 221 GIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 291 IEKLTSLENLDLSGNQLSGT----IPPTLWN-LTNLLSLQLFSNNLSGTIPPEIGSM--- 342
           +    SL+ L L+GN+L       +  TL      L SL + S + +        S+   
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 343 -ASLVAFDVNTNQLHGE--------LPENISRLVKLNKFSVFTNNFSGSIPGDFG----- 388
              L+   ++ N+L           L +  S L  L    +   +       D       
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW---LADCDV-----SDSSCSSLA 391

Query: 389 ---KFSPSLINVSFSNNSFSGELPHELCSGFA-----LEELTVNGNNFT----GSLPACL 436
                + SL  +  SNN        +L          LE+L +    ++      L A  
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451

Query: 437 RNCSNL 442
           ++  +L
Sbjct: 452 KDKPSL 457

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 560 TELAYLDLSNNKLTGDVPQELGR-FDKLLSLNLSHNDLSGE----IPSNLGNLFVLQYML 614
            ++  LD+   +L+     EL     +   + L    L+      I S L     L   L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE-L 61

Query: 615 DLSSNSLSGTIPQELGKL-----TSLEILNLSRNQLSGR----IPASLSSMISLRSVDFS 665
           +L SN L       + +        ++ L+L    L+G     + ++L ++ +L+ +  S
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 666 DNELTELAV 674
           DN L +  +
Sbjct: 122 DNLLGDAGL 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
                LDLS N LS L  E   T L  L  L L+ N     +S      + NL  L L++
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPE-- 193
           N            +  L+++ L+NN       ++   +  LQ L L  N ++   P E  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 194 --LGLCTNLSYLALAVNQLSGGLPLSLSNLSKL--NDLGLSDN 232
                   L  L L+ N+L       L  L     N L L +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 7e-16
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 23/177 (12%)

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIP--TDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLT 560
           +P  L + T   +L L  N L+ ++       +L  L +L LS+NHL   I       + 
Sbjct: 33  VPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKLLSL---NLSHNDLSGEIPSN-LGNLFVLQYMLDL 616
            L YLDLS+N L   + + L  F  L +L    L +N +   +  N   ++  LQ  L L
Sbjct: 89  NLRYLDLSSNHLH-TLDEFL--FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQK-LYL 143

Query: 617 SSNSLSGTIPQE----LGKLTSLEILNLSRNQLSGRIPASLSSMISL--RSVDFSDN 667
           S N +S   P E      KL  L +L+LS N+L       L  + +     +   +N
Sbjct: 144 SQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 20  AIPFQLSSLRKVRYLDLGGNFLET--PDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTC 76
            +P  L S      LDL  N L     +W+  + + +L  L L  N L  +   +F+   
Sbjct: 32  NVPQSLPSY--TALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFISSEAFV-PV 87

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
            NL YLDLS N L  L  E LF++L  LE L L  N     +  N    ++ L  L L+ 
Sbjct: 88  PNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 136 NKFSGPIPG---DIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
           N+ S        D   +  L L++L +N       + L +L       L ++
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 4   LSELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           L+ L  L +  N+LN  I  +    +  +RYLDL  N L T D   FS + +L  L LY 
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 63  NELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTN---LGKLEYLNLTENQFQGKL 118
           N +              L  L LS N++S   P  L  +   L KL  L+L+ N+ +   
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 119 SPNVSKLSNL--IDLRLATN 136
             ++ KL       L L  N
Sbjct: 180 LTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 11/136 (8%)

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE-LGRFDKLLSLNLSHNDLSGE 599
           L+ S   L   +P+S+ + T    LDLS+N L+    +    R   L SL LSHN L+  
Sbjct: 23  LSCSKQQLP-NVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-F 78

Query: 600 IPSN-LGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQLSGRIPA-SLSSM 656
           I S     +  L+Y LDLSSN L  T+ +     L +LE+L L  N +   +   +   M
Sbjct: 79  ISSEAFVPVPNLRY-LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135

Query: 657 ISLRSVDFSDNELTEL 672
             L+ +  S N+++  
Sbjct: 136 AQLQKLYLSQNQISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 7e-12
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 247 TELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLS 303
           +    L + +N+    +  E     LT L  L L  N+ +  I SE    + +L  LDLS
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96

Query: 304 GNQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPE 361
            N L  T+      +L  L  L L++N++   +       MA L    ++ NQ+    P 
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

Query: 362 ----NISRLVKLNKFSVFTNNFSGSIPGDFGKF-SPSLINVSFSNNSF 404
               + ++L KL    + +N        D  K  +     +   NN  
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            +  L+YL +  N+L+    F  S L+ +  L L  N +   D + F  M  L  L L  
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 63  NELTLEFPSFILTC----RNLTYLDLSLNKLSGLIPERLFTNLGKL--EYLNLTENQFQ 115
           N+++  FP  ++        L  LDLS NKL   +P      L       L L  N  +
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 418 LEELTVNGNNFTGSLPAC-LRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
           L  L ++ N+    + +       NL  +    N         F     L+ + L  N  
Sbjct: 66  LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH- 123

Query: 477 VGEISPD-WGECRNLSNLQLDRNRISGGIPAE----LGNLTRLGVLSLDSNELTGKIPTD 531
           +  +  + + +   L  L L +N+IS   P E       L +L +L L SN+L     TD
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 532 LGKLVKL--FNLNLSNNHLT 549
           L KL       L L NN L 
Sbjct: 183 LQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 588 SLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQLS 646
            L+ S   L   +P +L        +LDLS N+LS    +    +LT+L  L LS N L+
Sbjct: 22  ILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 647 GRIPA-SLSSMISLRSVDFSDNELTEL 672
             I + +   + +LR +D S N L  L
Sbjct: 78  -FISSEAFVPVPNLRYLDLSSNHLHTL 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 17/237 (7%)

Query: 436 LRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495
               +   +        T  +T        +D I  + +  +  +        N++ L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFL 75

Query: 496 DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS 555
           + N+++   P  L NL  LG L LD N++   + + L  L KL +L+L +N ++ +I   
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DIN-G 129

Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLD 615
           + +L +L  L L NNK+T      L R  KL +L+L  N +S +I   L  L  LQ  L 
Sbjct: 130 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQN-LY 184

Query: 616 LSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           LS N +S    + L  L +L++L L   +   +     S+++   +V  +D  L   
Sbjct: 185 LSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 51/256 (19%), Positives = 98/256 (38%), Gaps = 42/256 (16%)

Query: 76  CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135
                  +L    ++  +       L  ++ +    +  +  +   +  L N+  L L  
Sbjct: 23  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
           NK        +  +  L                    LKNL  L L  N +   +   L 
Sbjct: 78  NK--------LTDIKPL------------------ANLKNLGWLFLDENKVK-DLSS-LK 109

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQ 255
               L  L+L  N +S  +   L +L +L  L L +N ++ +I+   +   T+L++L ++
Sbjct: 110 DLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLE 164

Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL 315
           +N    +I P +  LTKLQ L+L +N+ S      +  L +L+ L+L   +         
Sbjct: 165 DNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 316 WNLTNLLSLQLFSNNL 331
            NL    +++    +L
Sbjct: 221 SNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 18/237 (7%)

Query: 23  FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82
           F   +  +    +L    +   D    + + S+  +    +++       I    N+T L
Sbjct: 18  FSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 83  DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPI 142
            L+ NKL+ + P     NL  L +L L EN+ +  LS  +  L  L  L L  N  S  I
Sbjct: 74  FLNGNKLTDIKP---LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISD-I 127

Query: 143 PGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY 202
            G +  +  L+ + L NN  T    + L +L  L  L L  N +  +    L   T L  
Sbjct: 128 NG-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182

Query: 203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259
           L L+ N +S      L+ L  L+ L L           N   N     +++  + S 
Sbjct: 183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 55/246 (22%), Positives = 113/246 (45%), Gaps = 16/246 (6%)

Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
              I  +    S +  +     +  +++++  N ++   S+   ++   N+ ++  +GN+
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNK 79

Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNL 511
            T +I K       L ++ L  N+ V ++S    + + L +L L+ N IS  I   L +L
Sbjct: 80  LT-DI-KPLANLKNLGWLFLDENK-VKDLSSL-KDLKKLKSLSLEHNGISD-ING-LVHL 133

Query: 512 TRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNK 571
            +L  L L +N++T    T L +L KL  L+L +N ++ +I   ++ LT+L  L LS N 
Sbjct: 134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH 189

Query: 572 LTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK 631
           ++ D+ + L     L  L L   +   +  ++  NL V   + +   + ++  I  + G 
Sbjct: 190 IS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 247

Query: 632 LTSLEI 637
                +
Sbjct: 248 YEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 42/255 (16%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +L+ +  +   ++++       +  L  V  L L GN L   D    +++ +L  L L  
Sbjct: 44  ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT--DIKPLANLKNLGWLFLDE 99

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N++     S +   + L  L L  N +S +       +L +LE L L  N+    ++  +
Sbjct: 100 NKVK--DLSSLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKIT-DITV-L 152

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           S+L+ L  L L  N+ S     DI                       L  L  LQ+L L 
Sbjct: 153 SRLTKLDTLSLEDNQIS-----DI---------------------VPLAGLTKLQNLYLS 186

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N ++      L    NL  L L   +         SNL   N +  +D  L   ++  +
Sbjct: 187 KNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPEI 241

Query: 243 IGNWTELESLQIQNN 257
           I +  + E   ++ +
Sbjct: 242 ISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 55/304 (18%), Positives = 106/304 (34%), Gaps = 67/304 (22%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
             +     L + + +  +     +L S++ +  + + +  ++   +  L N+  L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 78

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            L+  I P + ++ +L    ++ N++     +++S L  L K                  
Sbjct: 79  KLT-DIKP-LANLKNLGWLFLDENKV-----KDLSSLKDLKK------------------ 113

Query: 390 FSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG 449
                                       L+ L++  N  +  +   L +   L  +    
Sbjct: 114 ----------------------------LKSLSLEHNGIS-DING-LVHLPQLESLYLGN 143

Query: 450 NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELG 509
           N+ T +IT       +LD + L  NQ + +I P       L NL L +N IS      L 
Sbjct: 144 NKIT-DIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD--LRALA 197

Query: 510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN 569
            L  L VL L S E   K       LV    +  ++  L    P+ IS+  +    ++  
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 255

Query: 570 NKLT 573
           +   
Sbjct: 256 HLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +L  L +L + +N +       L  L+K++ L L  N +   D +    +P L  L L  
Sbjct: 88  NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGN 143

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N++T    + +     L  L L  N++S ++P      L KL+ L L++N     L   +
Sbjct: 144 NKIT--DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRA-L 196

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
           + L NL  L L + +          ++     V+  + S     P  +    + +  +++
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 183 MNALNYT 189
            +   +T
Sbjct: 255 WHLPEFT 261

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.0 bits (199), Expect = 5e-16
 Identities = 52/300 (17%), Positives = 90/300 (30%), Gaps = 30/300 (10%)

Query: 395 INVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTG 454
           ++V FS     G     L        L+V      G          +L     +      
Sbjct: 257 LSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQH 316

Query: 455 NITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRL 514
                +          L  ++       D      L   +L   + +  + +EL +   L
Sbjct: 317 TFRVIWTGSDSQKECVLLKDRPECWC-RDSATDEQLFRCELSVEKSTV-LQSELESCKEL 374

Query: 515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG---------------------EIP 553
             L  ++      I   +  L  L     +  + +                      E  
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434

Query: 554 KSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYM 613
                  ++  L L++  LT  V   L +   +  L+LSHN L   +P  L  L  L+ +
Sbjct: 435 VLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE-V 490

Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG-RIPASLSSMISLRSVDFSDNELTEL 672
           L  S N+L   +   +  L  L+ L L  N+L        L S   L  ++   N L + 
Sbjct: 491 LQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 5e-12
 Identities = 50/272 (18%), Positives = 85/272 (31%), Gaps = 21/272 (7%)

Query: 103 KLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162
            L   +L +   Q       +   +  +  L  ++       D  +   L   EL     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLFRCELSVEKS 361

Query: 163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLS 222
           T  + S L   K LQ L+        TI   +     L  L      L        S L 
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTIILLM---RALDPLLYEKETLQ-----YFSTLK 412

Query: 223 KLNDLGLSDNFLSGEISAN----LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 278
            ++ +  +               L   + ++  L + +      +   +  L  + +L L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDL 470

Query: 279 YRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSG-TIPP 337
             N     +P  +  L  LE L  S N L   +   + NL  L  L L +N L       
Sbjct: 471 SHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQ 527

Query: 338 EIGSMASLVAFDVNTNQLHGELPENISRLVKL 369
            + S   LV  ++  N L  +      RL ++
Sbjct: 528 PLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 25  LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
           L  L  V +LDL  N L     +  +++  L  L    N L       +     L  L L
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 85  SLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
             N+L      +   +  +L  LNL  N   
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 8   QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
           + L +    L          L K+ +L+L  N L+T     F  +  L  LGL  N+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 68  EFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-S 123
             P  +   LT   L  L L  N+L  L P  +F  L KL+ L L  NQ Q  +      
Sbjct: 97  SLPLGVFDHLT--QLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNN 160
           KL+NL  L L+TN+      G    +  LQ + LF N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 31/179 (17%)

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTG 550
            L L    ++    A    LT+L  L+LD N+L   +   +   L +L  L L+NN L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96

Query: 551 EIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFV 609
            +P  +  +LT+L  L L  N+L   +P   G FD+L  L                    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPS--GVFDRLTKLKE------------------ 135

Query: 610 LQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
               L L++N L  +IP     KLT+L+ L+LS NQL      +   +  L+++    N
Sbjct: 136 ----LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 37/180 (20%)

Query: 156 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAVNQLSGG 213
           +L +        ++   L  L  L+L  N L  T+   +   L T L  L LA NQL+  
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDL-TELGTLGLANNQLASL 98

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL---L 270
                 +L++L+ L L  N                    Q+++      +P   G+   L
Sbjct: 99  PLGVFDHLTQLDKLYLGGN--------------------QLKS------LPS--GVFDRL 130

Query: 271 TKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
           TKL+ L L  N     IP+   +KLT+L+ L LS NQL          L  L ++ LF N
Sbjct: 131 TKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 48/181 (26%), Positives = 64/181 (35%), Gaps = 32/181 (17%)

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS 139
             LDL    L+ L  +  F  L KL +LNL  NQ Q  LS  V               F 
Sbjct: 38  EKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQ-TLSAGV---------------FD 80

Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLC 197
                     + L  + L NN            L  L  L L  N L  ++P  +   L 
Sbjct: 81  DL--------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRL- 130

Query: 198 TNLSYLALAVNQLSGGLPLSL-SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN 256
           T L  L L  NQL   +P      L+ L  L LS N L   +         +L+++ +  
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188

Query: 257 N 257
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI 190
           L L +   +         ++ L  + L  N            L  L  L L  N L  ++
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 191 PPEL--GLCTNLSYLALAVNQLSGGLPLSL-SNLSKLNDLGLSDNFLSGEISANLIGNWT 247
           P  +   L T L  L L  NQL   LP  +   L+KL +L L+ N L   I A      T
Sbjct: 99  PLGVFDHL-TQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 248 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNF 283
            L++L +  N            L KLQ + L+ N F
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGN 305
            + E L +Q+             LTKL +L L  N     + + + + LT L  L L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN 93

Query: 306 QLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI 363
           QL+ ++P  ++ +LT L  L L  N L  ++P  +   +  L    +NTNQL   +P   
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150

Query: 364 -SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 402
             +L  L   S+ TN    S+P         L  ++   N
Sbjct: 151 FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 17/148 (11%)

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL 587
           IP D         L+L +  L      +   LT+L +L+L  N+L   +    G FD L 
Sbjct: 33  IPADTE------KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSA--GVFDDLT 83

Query: 588 S---LNLSHNDLSGEIPSNL-GNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRN 643
               L L++N L+  +P  +  +L  L   L L  N L         +LT L+ L L+ N
Sbjct: 84  ELGTLGLANNQLA-SLPLGVFDHLTQLDK-LYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 644 QLSGRIPASL-SSMISLRSVDFSDNELT 670
           QL   IPA     + +L+++  S N+L 
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 8/156 (5%)

Query: 419 EELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF-- 476
           E+L +          A  R  + L  +  D NQ        F     L  + L+ NQ   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDL-GK 534
           +     D      L  L L  N++   +P+ +   LT+L  L L++N+L   IP     K
Sbjct: 98  LPLGVFD--HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNN 570
           L  L  L+LS N L      +   L +L  + L  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 13/118 (11%)

Query: 3   DLSELQYLSVYDNNLNGAIP---FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLG 59
           DL+EL  L + +N L  ++P   F    L ++  L LGGN L++     F  +  L  L 
Sbjct: 81  DLTELGTLGLANNQLA-SLPLGVFD--HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 60  LYLNELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
           L  N+L    P+     LT  NL  L LS N+L   +P   F  LGKL+ + L  NQF
Sbjct: 138 LNTNQLQ-SIPAGAFDKLT--NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNL 321
           +P  I   T  + L L     +    +    LT L  L+L  NQL  T+   +++ LT L
Sbjct: 29  VPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85

Query: 322 LSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNF 379
            +L L +N L+ ++P  +   +  L    +  NQL   LP  +  RL KL +  + TN  
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

Query: 380 SGSIP 384
             SIP
Sbjct: 144 Q-SIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 35/194 (18%)

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASL 345
           +PS I      E LDL    L+     T   LT L  L L  N L  T+   +   +  L
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85

Query: 346 VAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNNS 403
               +  NQL   LP  +   L +L+K  +  N    S+P G F +    L         
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR----LTK------- 132

Query: 404 FSGELPHELCSGFALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGV 462
                         L+EL +N N    S+PA      +NL  +    NQ       AF  
Sbjct: 133 --------------LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

Query: 463 HPRLDFIRLSGNQF 476
             +L  I L GNQF
Sbjct: 178 LGKLQTITLFGNQF 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 50/258 (19%), Positives = 89/258 (34%), Gaps = 36/258 (13%)

Query: 53  PSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE- 111
            +   L   L +L +          +L  +++S N +  +I   +F+NL KL  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 112 NQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL 170
           N     ++P     L NL  L ++                   +  L +           
Sbjct: 90  NNLL-YINPEAFQNLPNLQYLLISNT----------------GIKHLPDVHKIH------ 126

Query: 171 GQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLG 228
                   LD++ N   +TI      GL      L L  N +   +  S  N ++L++L 
Sbjct: 127 --SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 229 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPI 287
           LSDN    E+  ++    +    L I       ++P      L KL+    Y        
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT- 241

Query: 288 PSEIEKLTSLENLDLSGN 305
              +EKL +L    L+  
Sbjct: 242 ---LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 14/234 (5%)

Query: 31  VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILT-CRNLTYLDLS-LNK 88
              L      L       FS    L  + +  N++     + + +    L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI-- 146
           L   I    F NL  L+YL ++    +     +       + L +  N     I  +   
Sbjct: 92  LL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 147 GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLCTNLSYLA 204
           G      ++ L  N       S+    +  +      N L   +P ++  G  +    L 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGA-SGPVILD 208

Query: 205 LAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS 258
           ++  ++       L NL KL      +           +     L    +   S
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNL-----KKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 49/270 (18%), Positives = 90/270 (33%), Gaps = 27/270 (10%)

Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
            H +C            +  T  +P+ L    N   +RF   +       AF     L+ 
Sbjct: 3   HHRICHCS-NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEK 58

Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQ----LDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
           I +S N  +  I        NL  L        N +    P    NL  L  L + +  +
Sbjct: 59  IEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116

Query: 525 TGKIPTDL-GKLVKLFNLNLS-NNHLTGEIPKSISNLT-ELAYLDLSNNKLTGDVPQELG 581
              +P       ++   L++  N ++      S   L+ E   L L+ N +  ++     
Sbjct: 117 K-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF 174

Query: 582 RFDKLLSLNLSHN----DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEI 637
              +L  LNLS N    +L  ++        +L    D+S   +       L  L  L  
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL----DISRTRIHSLPSYGLENLKKLRA 230

Query: 638 LNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
            +    +   ++P +L  +++L     +  
Sbjct: 231 RSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 11/210 (5%)

Query: 4   LSELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDL-GGNFLETPDWSKFSSMPSLTHLGLY 61
             +L+ + +  N++   I     S+L K+  + +   N L   +   F ++P+L +L + 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 62  LNELTLEFPSFI-LTCRNLTYLDLSLNKLSGLIPERLFTNL-GKLEYLNLTENQFQGKLS 119
              +    P    +       LD+  N     I    F  L  +   L L +N  Q ++ 
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIH 170

Query: 120 PNVSKLSNLIDLRLATNKFSGPIPGDI-GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
            +    + L +L L+ N     +P D+    S   ++++        +PS    L+NL+ 
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKK 227

Query: 179 LDLRMNALNYTIPPELGLCTNLSYLALAVN 208
           L  R       +P    L   L   +L   
Sbjct: 228 LRARSTYNLKKLPTLEKL-VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 38/214 (17%), Positives = 81/214 (37%), Gaps = 9/214 (4%)

Query: 461 GVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPAE-LGNLTRLGVLS 518
            +      +R    +    I    +    +L  +++ +N +   I A+   NL +L  + 
Sbjct: 27  DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 519 L-DSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDV 576
           +  +N L    P     L  L  L +SN  +   +P     +  +   LD+ +N     +
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 577 PQEL--GRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTS 634
            +    G   + + L L+ N +  EI ++  N   L  +    +N+L           + 
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 635 LEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668
             IL++SR ++       L ++  LR+    + +
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 46/265 (17%), Positives = 78/265 (29%), Gaps = 37/265 (13%)

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMAS 344
           IPS++    +   L     +L   I         +L  +++  N++   I  ++  ++  
Sbjct: 24  IPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 345 LVAFDV-NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS 403
           L    +   N L    PE    L  L    +        +P      S   + +   +N 
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 404 FSGELPHELCSGFA--LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFG 461
               +      G +     L +N N       +             D N           
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-------- 191

Query: 462 VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDS 521
                    L  + F G              L + R RI       L NL +L   S  +
Sbjct: 192 --------ELPNDVFHG--------ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 522 NELTGKIPTDLGKLVKLFNLNLSNN 546
            +   K+PT L KLV L   +L+  
Sbjct: 236 LK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 11/163 (6%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNF-LETPDWSKFSSMPS-LTHLGL 60
           +L  LQYL + +  +            +   LD+  N  + T + + F  +      L L
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 61  YLNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
             N +  +   +F  T +         N L   +P  +F        L+++  +    L 
Sbjct: 162 NKNGIQEIHNSAFNGT-QLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 120 PNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS 161
                 L  L        K        +  +  L    L   S
Sbjct: 219 SYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYPS 257

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 9/192 (4%)

Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNN 546
            +   L+L    +         NL  +  + +  +    ++ +     L K+ ++ + N 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 547 HLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQE--LGRFDKLLSLNLSHNDLSGEIPSN 603
                I       L  L +L + N  L    P    +   D    L ++ N     IP N
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 604 -LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPA-SLSSMIS-LR 660
               L      L L +N  + ++       T L+ + L++N+    I   +   + S   
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 661 SVDFSDNELTEL 672
            +D S   +T L
Sbjct: 209 LLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 41/257 (15%), Positives = 83/257 (32%), Gaps = 54/257 (21%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLAT 135
            +   L L    L   IP   F+NL  +  + ++ +    +L  +    LS +  + +  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
            +                L  +  ++           L  L+ L +    L    P    
Sbjct: 90  TR---------------NLTYIDPDALKE--------LPLLKFLGIFNTGLK-MFPDLTK 125

Query: 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT-ELESLQI 254
           +                       +      L ++DN     I  N       E  +L++
Sbjct: 126 V----------------------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 255 QNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EKLTS-LENLDLSGNQLSGTIP 312
            NN F  ++       TKL  ++L +N +   I  +    + S    LD+S   ++  +P
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221

Query: 313 P-TLWNLTNLLSLQLFS 328
              L +L  L++   ++
Sbjct: 222 SKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
            + +   V   ++   IP   S     + L L    L T     FS++P+++ + + ++ 
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 65  L--TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG-KLSPN 121
               LE  SF      +T++++   +    I       L  L++L +     +       
Sbjct: 67  TLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDI--GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
           V        L +  N +   IP +   G  +    ++L+NN FT  +         L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184

Query: 180 DLRMNALNYTIPPEL--GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDL 227
            L  N     I  +   G+ +  S L ++   ++      L +L +L   
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 30/172 (17%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQI 254
            L  +   L L    L      + SNL  ++ + +S +    ++ ++   N +++  ++I
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 255 QNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSG-PIPSEIEKLTSLENLDLSGNQLSGTIP 312
           +N   +  I P+    L  L++L ++       P  +++        L+++ N    +IP
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 313 P-TLWNLTNLL-SLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 362
                 L N   +L+L++N  + ++     +   L A  +N N+    + ++
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 33/230 (14%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNI-TKAFGVHPRLDFIRLSGNQF 476
            + L +   +          N  N++R+    +     + + +F    ++  I +   + 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP--TDLGK 534
           +  I PD                        L  L  L  L + +  L    P  T +  
Sbjct: 93  LTYIDPDA-----------------------LKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 535 LVKLFNLNLS-NNHLTGEIPKSISNLT-ELAYLDLSNNKLTGDVPQELGRFDKLLSLNLS 592
               F L ++ N ++T     +   L  E   L L NN  T  V        KL ++ L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 593 HNDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNL 640
            N     I  +  G ++    +LD+S  S++  +P + L  L  L   N 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +LS++ ++ + +          L+ +                       +P L  LG++ 
Sbjct: 78  NLSKVTHIEIRNTR-------NLTYIDP----------------DALKELPLLKFLGIFN 114

Query: 63  NELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK-LEYLNLTENQFQGKLSP 120
             L      + + +      L+++ N     IP   F  L      L L  N F   +  
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDI--GSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
                + L  + L  NK+   I  D   G  S   L+++   S T  +PS    L++L+ 
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKE 230

Query: 179 LDLR 182
           L  R
Sbjct: 231 LIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGE 599
           +  ++   +   IP   S       L L    L             +  + +S +    +
Sbjct: 15  DFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 600 IPSNL-GNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQLSGRIPA--SLSS 655
           + S+   NL  + + +++ +      I  + L +L  L+ L +    L    P    + S
Sbjct: 71  LESHSFYNLSKVTH-IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 656 MISLRSVDFSDN 667
                 ++ +DN
Sbjct: 129 TDIFFILEITDN 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 8   QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
             + +  N +    P   S  +K+R +DL  N +       F  + SL  L LY N++T 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 68  EFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
           E P  +   L   +L  L L+ NK++  +    F +L  L  L+L +N+ Q       S 
Sbjct: 94  ELPKSLFEGLF--SLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 125 LSNLIDLRLATN 136
           L  +  + LA N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 31  VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNEL-TLEFPSFILTCRNLTYLDLSLNKL 89
           +  + L  N ++      FS    L  + L  N++  L   +F    R+L  L L  NK+
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKI 92

Query: 90  SGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGS 148
           + L P+ LF  L  L+ L L  N+    L  +    L NL  L L  NK      G    
Sbjct: 93  TEL-PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 149 MSNLQLVELFNNSF 162
           +  +Q + L  N F
Sbjct: 151 LRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 189 TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTE 248
            IP    L   ++ + L  N +    P + S   KL  + LS+N +S E++ +       
Sbjct: 25  EIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 249 LESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQ 306
           L SL +  N  +  +P  +   L  LQ L L  N  +  +  +  + L +L  L L  N+
Sbjct: 82  LNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK 139

Query: 307 LSGTIPPTLWNLTNLLSLQLFSN 329
           L      T   L  + ++ L  N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 11/133 (8%)

Query: 540 NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLN---LSHNDL 596
            + L  N +    P + S   +L  +DLSNN+++ ++      F  L SLN   L  N +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKI 92

Query: 597 SGEIPSNL-GNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQLSGRIPASLS 654
           + E+P +L   LF LQ  L L++N ++  +  +    L +L +L+L  N+L      + S
Sbjct: 93  T-ELPKSLFEGLFSLQL-LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 655 SMISLRSVDFSDN 667
            + +++++  + N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 53  PSLTHLGLYLNELT-LEFPSFI-LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110
            ++T + L  N +  +   +F       L  +DLS N++S L     F  L  L  L L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISEL-APDAFQGLRSLNSLVLY 88

Query: 111 ENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSS 169
            N+   +L  ++   L +L  L L  NK +         + NL L+ L++N        +
Sbjct: 89  GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 170 LGQLKNLQHLDLRMNALN 187
              L+ +Q + L  N   
Sbjct: 148 FSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 31/158 (19%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATN 136
            +T + L  N +  + P   F+   KL  ++L+ NQ   +L+P+    L +L  L L  N
Sbjct: 33  TITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL-- 194
                           ++ EL  + F G        L +LQ L L  N +N  +  +   
Sbjct: 91  ----------------KITELPKSLFEG--------LFSLQLLLLNANKIN-CLRVDAFQ 125

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
            L  NL+ L+L  N+L      + S L  +  + L+ N
Sbjct: 126 DL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 4   LSELQYLSVYDNNLNGAIP---FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
             +L+ + + +N ++  +    FQ   LR +  L L GN +     S F  + SL  L L
Sbjct: 55  YKKLRRIDLSNNQIS-ELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111

Query: 61  YLNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
             N++             NL  L L  NKL   I +  F+ L  ++ ++L +N F
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 13/146 (8%)

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTN 320
           N+P  I        + L +N      P        L  +DLS NQ+S  + P     L +
Sbjct: 29  NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 321 LLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNN 378
           L SL L+ N ++  +P  +   + SL    +N N+++  L  +    L  LN  S++ N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 379 FSGSIPGDFGKFSPSLINVSFSNNSF 404
              +I         ++  +  + N F
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQ---LDRNRISGGIPAEL-GNLTRLGVLSLDSNEL 524
           IRL  N     I P  G       L+   L  N+IS  +  +    L  L  L L  N++
Sbjct: 37  IRLEQNTIK-VIPP--GAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKI 92

Query: 525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRF 583
           T    +    L  L  L L+ N +   +      +L  L  L L +NKL           
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 584 DKLLSLNLSHN 594
             + +++L+ N
Sbjct: 152 RAIQTMHLAQN 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 16/211 (7%)

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
               L+N +   L     +  +      +S +Q     N++      + +    NL+ L 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELH 69

Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA 240
           L  N ++  + P L   T L  L++  N+L     +  + LS+L    L +N L  +  +
Sbjct: 70  LSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR-DTDS 123

Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
             + +   LE L I+NN  + +I   +G L+KL+ L L+ N  +      + +L  +  +
Sbjct: 124 --LIHLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177

Query: 301 DLSGNQLSGTIPPTLWNLTNLLSLQLFSNNL 331
           DL+G +           L    +++      
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 19/235 (8%)

Query: 23  FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82
           F    L      +LG   +   D      +  + +     + +     + +    NL  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 83  DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPI 142
            LS N++S L P     +L KLE L++  N+ +  L+      + L  L L  N+     
Sbjct: 69  HLSHNQISDLSP---LKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTD 122

Query: 143 PGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY 202
              +  + NL+++ + NN         LG L  L+ LDL  N +  T    L     +++
Sbjct: 123 S--LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNW 176

Query: 203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
           + L   +           L   N +   D      IS   I N        +   
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRW---ISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 15/222 (6%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
             +  +   + T  +    +  S +     D +    ++         L  + LS NQ +
Sbjct: 21  AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ-I 75

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
            ++SP   +   L  L ++RNR+          L+RL    LD+NEL       L  L  
Sbjct: 76  SDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDSLIHLKN 129

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           L  L++ NN L   I   +  L++L  LDL  N++T      L R  K+  ++L+     
Sbjct: 130 LEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT--NTGGLTRLKKVNWIDLTGQKCV 185

Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILN 639
            E       L++   + D     +S       G      +L 
Sbjct: 186 NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLW 227

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 14/165 (8%)

Query: 508 LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
              L      +L    +T  +     +L  + N N  N+++       +   T L  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 568 SNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQ 627
           S+N+++ D+   L    KL  L+++ N L          L      L L +N L  T   
Sbjct: 71  SHNQIS-DLS-PLKDLTKLEELSVNRNRLKNLNGIPSACLSR----LFLDNNELRDTDS- 123

Query: 628 ELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
            L  L +LEIL++  N+L   I   L  +  L  +D   NE+T  
Sbjct: 124 -LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 18/189 (9%)

Query: 486 ECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
           E   + N   D + I     A +   T L  L L  N+++  + + L  L KL  L+++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNR 94

Query: 546 NHLTGEIPKSISNLTE--LAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN 603
           N L      +++ +    L+ L L NN+L       L     L  L++ +N L   I   
Sbjct: 95  NRLK-----NLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI-VM 145

Query: 604 LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVD 663
           LG L  L+  LDL  N ++ T    L +L  +  ++L+  +           +    +V 
Sbjct: 146 LGFLSKLEV-LDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 664 FSDNELTEL 672
             D      
Sbjct: 203 DPDGRWISP 211

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +LS +Q  +  ++N+       +     ++ L L  N +   D S    +  L  L +  
Sbjct: 39  ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS--DLSPLKDLTKLEELSVNR 94

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N L        +    L+ L L  N+L          +L  LE L++  N+ +  +   +
Sbjct: 95  NRLKNLNG---IPSACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLK-SIVM-L 146

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
             LS L  L L  N+ +      +  +  +  ++L       +    +     L   +  
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNE---PVKYQPELYITNTV 201

Query: 183 MNALNYTIPPE 193
            +     I P 
Sbjct: 202 KDPDGRWISPY 212

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATN 136
               L L+ N+ + L    +F  L +L  +N + N+    +        S + ++ L +N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL-- 194
                           +L  + +  F G        L++L+ L LR N +   +  +   
Sbjct: 92  ----------------RLENVQHKMFKG--------LESLKTLMLRSNRIT-CVGNDSFI 126

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
           GL +++  L+L  NQ++   P +   L  L+ L L  N
Sbjct: 127 GL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 34  LDLGGNFLET-PDWSKFSSMPSLTHLGLYLNELT-LEFPSF-ILTCRNLTYLDLSLNKLS 90
           L L  N          F  +P L  +    N++T +E  +F   +   +  + L+ N+L 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--GVNEILLTSNRLE 94

Query: 91  GLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSM 149
            +   ++F  L  L+ L L  N+    +  +    LS++  L L  N+ +   PG   ++
Sbjct: 95  NV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 150 SNLQLVELFNNSF 162
            +L  + L  N F
Sbjct: 153 HSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L +L+ ++  +N +             V  + L  N LE      F  + SL  L L  
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 63  NELT-LEFPSFI-LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
           N +T +   SFI L+  ++  L L  N+++  +    F  L  L  LNL  N F 
Sbjct: 115 NRITCVGNDSFIGLS--SVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 34/167 (20%)

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKSISNLTE 561
            IP      T    L L++NE T    T +  KL +L  +N SNN +T     +    + 
Sbjct: 29  HIPQY----TA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSL 621
           +  + L++N+L  +V      F  L SL                        L L SN +
Sbjct: 83  VNEILLTSNRLE-NVQH--KMFKGLESLKT----------------------LMLRSNRI 117

Query: 622 SGTIPQEL-GKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
           +  +  +    L+S+ +L+L  NQ++   P +  ++ SL +++   N
Sbjct: 118 T-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 247 TELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSG 304
                L++ NN F   +        L +L+ +    N  +       E  + +  + L+ 
Sbjct: 32  QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 305 NQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPEN 362
           N+L   +       L +L +L L SN ++  +  +    ++S+    +  NQ+   +   
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 363 I-SRLVKLNKFSVFTNNF 379
               L  L+  ++  N F
Sbjct: 148 AFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 440 SNLNRVRFDGNQFTG-NITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSNLQLDR 497
                +R + N+FT    T  F   P+L  I  S N+ + +I    +     ++ + L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90

Query: 498 NRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKS 555
           NR+   +  ++   L  L  L L SN +T  +  D    L  +  L+L +N +T  +   
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 556 I-SNLTELAYLDLSNN 570
               L  L+ L+L  N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFI---LTCRNLTYLDLSLNK 88
           + L L  N +   +   F S+ +L  L L  N+L    P  +   LT   LT LDL  N+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT--QLTVLDLGTNQ 99

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGS 148
           L+ L P  +F  L  L+ L +  N+   +L   + +L++L  L L  N+      G    
Sbjct: 100 LTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 149 MSNLQLVELFNN 160
           +S+L    LF N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 30/147 (20%)

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGG 503
            +    NQ T      F     L  + L  NQ                 L      +  G
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-----------------LG----ALPVG 82

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
           +   L  LT L    L +N+LT  +P+ +  +LV L  L +  N LT E+P+ I  LT L
Sbjct: 83  VFDSLTQLTVLD---LGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137

Query: 563 AYLDLSNNKLTGDVPQELGRFDKLLSL 589
            +L L  N+L   +P   G FD+L SL
Sbjct: 138 THLALDQNQLKS-IPH--GAFDRLSSL 161

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 34/144 (23%)

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTE 561
           GIP       +  +L L  N++T   P     L+ L  L L +N L   +P  +  +LT+
Sbjct: 37  GIPTN----AQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSL 621
           L  LDL  N+LT  +P     FD+L+ L                        L +  N L
Sbjct: 90  LTVLDLGTNQLTV-LPS--AVFDRLVHLKE----------------------LFMCCNKL 124

Query: 622 SGTIPQELGKLTSLEILNLSRNQL 645
           +  +P+ + +LT L  L L +NQL
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTG 550
            L L  N+I+   P    +L  L  L L SN+L   +P  +   L +L  L+L  N LT 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 551 EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
                   L  L  L +  NKLT  +P+ + R   L  L L  N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGN 305
           T  + L + +N      P     L  L+ L+L  N     +P  + + LT L  LDL  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTN 98

Query: 306 QLSGTIPPTLWN-LTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS 364
           QL+  +P  +++ L +L  L +  N L+  +P  I  +  L    ++ NQL         
Sbjct: 99  QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 365 RLVKLNKFSVFTN 377
           RL  L    +F N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNL 321
           +P  I      Q L+L+ N  +   P   + L +L+ L L  NQL   +P  +++ LT L
Sbjct: 34  VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 322 LSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFS 380
             L L +N L+  +P  +   +  L    +  N+L  ELP  I RL  L   ++  N   
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

Query: 381 GSIPGDFGKFSPSLINVSFSNN 402
               G F + S SL +     N
Sbjct: 149 SIPHGAFDRLS-SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 52/181 (28%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
           +N Q++ L +N  T   P     L NL+ L L  N L   +P                  
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV----------------- 81

Query: 210 LSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-G 268
              G+  SL+    L  L L  N               +L  L           P  +  
Sbjct: 82  ---GVFDSLTQ---LTVLDLGTN---------------QLTVL-----------PSAVFD 109

Query: 269 LLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFS 328
            L  L+ LF+  N  +  +P  IE+LT L +L L  NQL          L++L    LF 
Sbjct: 110 RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 329 N 329
           N
Sbjct: 169 N 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 4   LSELQYLSVYDNNLN---GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           L  L+ L +  N L      +   L+ L     LDLG N L     + F  +  L  L +
Sbjct: 63  LINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQLTVLPSAVFDRLVHLKELFM 119

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113
             N+LT E P  I    +LT+L L  N+L   IP   F  L  L +  L  N 
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI 190
           L L  N+ +   PG   S+ NL+ + L +N            L  L  LDL  N L   +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 191 PP----ELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW 246
           P      L    +L  L +  N+L+  LP  +  L+ L  L L  N L   I        
Sbjct: 104 PSAVFDRL---VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRL 158

Query: 247 TELESLQIQNN 257
           + L    +  N
Sbjct: 159 SSLTHAYLFGN 169

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 20/106 (18%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF--------------LKDV 716
           E   T + ++K DVF +GV+ LE++ G+   +L    + +                L+ +
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 264

Query: 717 LDQRLP--PPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQEL 760
           +D  L       ++ +     I VAL CT ++P  RP M  V + L
Sbjct: 265 VDVDLQGNYKDEEVEQL----IQVALLCTQSSPMERPKMSEVVRML 306

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 56/218 (25%), Positives = 82/218 (37%), Gaps = 19/218 (8%)

Query: 20  AIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNL 79
             P    +  +    +L    +        + + S+  +    +++        L   N+
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLP--NV 65

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKF 138
            YL L  NKL  +        L  L YL LT NQ Q  L   V  KL+NL +L L  N+ 
Sbjct: 66  RYLALGGNKLHDI---SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121

Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPP----EL 194
                G    ++NL  + L +N           +L NL  LDL  N L  ++P     +L
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL 180

Query: 195 GLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN 232
              T L  L L  NQL          L+ L  + L DN
Sbjct: 181 ---TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L  ++YL++  N L+     +   L  + YL L GN L++     F  + +L  L L  N
Sbjct: 62  LPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 64  ELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           +L    P  +   LT  NLTYL+L+ N+L  L P+ +F  L  L  L+L+ NQ Q  L  
Sbjct: 120 QLQ-SLPDGVFDKLT--NLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQ-SLPE 174

Query: 121 NV-SKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNN 160
            V  KL+ L DLRL  N+    +P G    +++LQ + L +N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 59/256 (23%), Positives = 93/256 (36%), Gaps = 68/256 (26%)

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS 139
              +L    ++  +       L  ++ +    +  +      +  L N+  L L  NK  
Sbjct: 22  IKANLKKKSVTDAVT---QNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNK-- 74

Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL--GLC 197
                       L  +                 L NL +L L  N L  ++P  +   L 
Sbjct: 75  ------------LHDISALKE------------LTNLTYLILTGNQLQ-SLPNGVFDKL- 108

Query: 198 TNLSYLALAVNQLSGGLPLSLSN-LSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN 256
           TNL  L L  NQL   LP  + + L+ L  L L+ N               +L+SL    
Sbjct: 109 TNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHN---------------QLQSL---- 148

Query: 257 NSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPT 314
                  P  +   LT L  L L  N     +P  + +KLT L++L L  NQL  ++P  
Sbjct: 149 -------PKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK-SVPDG 199

Query: 315 LW-NLTNLLSLQLFSN 329
           ++  LT+L  + L  N
Sbjct: 200 VFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 25/174 (14%)

Query: 482 PDWGECRNLSNLQLDRNRIS--GGIPAELGNLTRLGVLSLDSNELTGKIPTDLG---KLV 536
               E  ++  +  + + I    GI      L  +  L+L  N+L      D+    +L 
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-----DISALKELT 85

Query: 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS---LNLSH 593
            L  L L+ N L          LT L  L L  N+L   +P   G FDKL +   LNL+H
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD--GVFDKLTNLTYLNLAH 142

Query: 594 NDLSGEIPSNL-GNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQL 645
           N L   +P  +   L  L   LDLS N L  ++P+ +  KLT L+ L L +NQL
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTE-LDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
             L   S T    +    L ++  +    + +       +    N+ YLAL  N+L    
Sbjct: 24  ANLKKKSVT-DAVTQNE-LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH--- 76

Query: 215 PLSLS---NLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLL 270
              +S    L+ L  L L+ N L   +   +    T L+ L +  N    ++P  +   L
Sbjct: 77  --DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 271 TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNLLSLQLFSN 329
           T L YL L  N          +KLT+L  LDLS NQL  ++P  +++ LT L  L+L+ N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

Query: 330 NL 331
            L
Sbjct: 192 QL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 33/174 (18%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
           +  L + GN     + A L+  +NL  +   GNQ        F     L  + L  NQ  
Sbjct: 65  VRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-- 120

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLV 536
                          LQ     +  G+  +L NLT L    L  N+L   +P  +  KL 
Sbjct: 121 ---------------LQ----SLPDGVFDKLTNLTYLN---LAHNQLQ-SLPKGVFDKLT 157

Query: 537 KLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL 589
            L  L+LS N L   +P+ +   LT+L  L L  N+L   VP   G FD+L SL
Sbjct: 158 NLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L+ L+ L + +N L          L  + YL+L  N L++     F  + +LT L L  N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

Query: 64  ELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113
           +L    P  +   LT   L  L L  N+L   +P+ +F  L  L+Y+ L +N 
Sbjct: 168 QLQ-SLPEGVFDKLT--QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
            E     ++  S   +   +  L   +  +    ++        I+ L ++  L L GN+
Sbjct: 19  AETIKANLKKKSV-TDAVTQNEL-NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNK 74

Query: 307 LSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-S 364
           L       L  LTNL  L L  N L  ++P  +   + +L    +  NQL   LP+ +  
Sbjct: 75  L--HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD 130

Query: 365 RLVKLNKFSVFTN 377
           +L  L   ++  N
Sbjct: 131 KLTNLTYLNLAHN 143

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 9/133 (6%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFI---LTCRNLTYLDLSLNK 88
            YLDL  N L++     F  + SLT L L  N+L    P+ +   LT  +LTYL+LS N+
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT--SLTYLNLSTNQ 87

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIG 147
           L  L P  +F  L +L+ L L  NQ Q  L   V  KL+ L DLRL  N+      G   
Sbjct: 88  LQSL-PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 148 SMSNLQLVELFNN 160
            +++LQ + L +N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTG 550
            L L+ N +          LT L  L L  N+L   +P  +  KL  L  LNLS N L  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 551 EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL---NLSHNDL 596
                   LT+L  L L+ N+L   +P   G FDKL  L    L  N L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQS-LPD--GVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 33/144 (22%)

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
           GIPA+   L       L++N L         +L  L  L L  N L        + LT L
Sbjct: 25  GIPAQTTYL------DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 563 AYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
            YL+LS N+L   +P   G FDKL  L                        L L++N L 
Sbjct: 79  TYLNLSTNQLQ-SLPN--GVFDKLTQLKE----------------------LALNTNQLQ 113

Query: 623 GTIPQEL-GKLTSLEILNLSRNQL 645
            ++P  +  KLT L+ L L +NQL
Sbjct: 114 -SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 31/148 (20%)

Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGG 503
            +  + N         F     L  + L GN+                 LQ     +  G
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----------------LQ----SLPNG 70

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGEIPKSI-SNLTE 561
           +  +L +LT L    L +N+L   +P  +  KL +L  L L+ N L   +P  +   LT+
Sbjct: 71  VFNKLTSLTYLN---LSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ 125

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSL 589
           L  L L  N+L   VP   G FD+L SL
Sbjct: 126 LKDLRLYQNQLKS-VPD--GVFDRLTSL 150

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L+ L  L +  N L        + L  + YL+L  N L++     F  +  L  L L  N
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110

Query: 64  ELTLEFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
           +L    P  +   LT   L  L L  N+L   +P+ +F  L  L+Y+ L +N +
Sbjct: 111 QLQ-SLPDGVFDKLT--QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
            +   L ++ NS           LT L  L+L  N           KLTSL  L+LS NQ
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 307 LSGTIPPTLWN-LTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI- 363
           L  ++P  +++ LT L  L L +N L  ++P  +   +  L    +  NQL   +P+ + 
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144

Query: 364 SRLVKLNKFSVFTN 377
            RL  L    +  N
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNL 321
           +P  I   T   YL L  N+         ++LTSL  L L GN+L  ++P  ++N LT+L
Sbjct: 22  VPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 322 LSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNF 379
             L L +N L  ++P  +   +  L    +NTNQL   LP+ +  +L +L    ++ N  
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 380 SGSIP-GDFGKFSPSLINVSFSNN 402
             S+P G F + + SL  +   +N
Sbjct: 137 K-SVPDGVFDRLT-SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG 164
            YL+L  N  +   +    +L++L  L L  NK      G    +++L  + L  N    
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 165 QIPSSLGQLKNLQHLDLRMNALNYTIPP----ELGLCTNLSYLALAVNQLSGGLPLSLSN 220
                  +L  L+ L L  N L  ++P     +L   T L  L L  NQL          
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKL---TQLKDLRLYQNQLKSVPDGVFDR 146

Query: 221 LSKLNDLGLSDN 232
           L+ L  + L DN
Sbjct: 147 LTSLQYIWLHDN 158

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 20/110 (18%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF--------------LKDV 716
           E  +  R+T+K DV+SFGVV  EV+  R    ++ SL  E+               L+ +
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSA--IVQSLPREMVNLAEWAVESHNNGQLEQI 268

Query: 717 LDQRLPPPTGQLA-EAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQ 765
           +D  L     ++  E++    + A+ C + + + RPSM  V  +L    +
Sbjct: 269 VDPNLA---DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 674 VTMRVTDKCDVFSFGVVALEVMMGR------HPGELITSLSGELF-----LKDVLDQRLP 722
           +   +T K D++SFGVV LE++ G          +L+  +  E+      ++D +D+++ 
Sbjct: 207 LRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM- 265

Query: 723 PPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQA 766
                 + +V    +VA  C     + RP ++ V Q L   T +
Sbjct: 266 --NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 54/312 (17%), Positives = 98/312 (31%), Gaps = 58/312 (18%)

Query: 393 SLINVSFSNNSFSGE----LPHELCSGFALEELTVNGNNFTG----SLPACLRNCSNLNR 444
           S+   S   ++ + E    +   L    +++E+ ++GN         L   + +  +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 445 VRFDGNQF----------TGNITKAFGVHPRLDFIRLSGNQF----VGEISPDWGECRNL 490
             F                  + +A    P+L  +RLS N F       +     +   L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 491 SNLQLDRNRIS-------------GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
            +L L  N +                +  +  N   L  +    N L      +  K  +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 538 ----LFNLNLSNNHLTGE-----IPKSISNLTELAYLDLSNNKLTGDVPQELGRF----D 584
               L  + +  N +  E     + + ++   EL  LDL +N  T      L        
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 585 KLLSLNLSHNDLSGEIPSNLGNLFVLQY-----MLDLSSNSLSGTIPQELG-----KLTS 634
            L  L L+   LS    + + + F          L L  N +     + L      K+  
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 635 LEILNLSRNQLS 646
           L  L L+ N+ S
Sbjct: 305 LLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 58/368 (15%), Positives = 119/368 (32%), Gaps = 63/368 (17%)

Query: 273 LQYLFLYRNNFSG----PIPSEIEKLTSLENLDLSGNQLSGT----IPPTLWNLTNLLSL 324
           ++   L  +  +      + + + +  S++ + LSGN +       +   + +  +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 325 QLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP 384
           +  S+  +G +  EI     L+   +              +L  +    +  N F  +  
Sbjct: 66  EF-SDIFTGRVKDEIPEALRLLLQALLKCP----------KLHTVR---LSDNAFGPTAQ 111

Query: 385 GDFGKF---SPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
                F      L ++   NN    +   ++    AL+EL VN            +N   
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKK---------AKNAPP 160

Query: 442 LNRVRFDGNQFTGN----ITKAFGVHPRLDFIRLSGNQF-----VGEISPDWGECRNLSN 492
           L  +    N+          K F  H  L  +++  N          +      C+ L  
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 493 LQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK------LFNLN 542
           L L  N  +      +   L +   L  L L+   L+ +    +           L  L 
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280

Query: 543 LSNNHLTGEIPKSI-----SNLTELAYLDLSNNKLT--GDVPQELGR-FDKLLSLNLSHN 594
           L  N +  +  +++       + +L +L+L+ N+ +   DV  E+   F       L   
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340

Query: 595 DLSGEIPS 602
           D   E+  
Sbjct: 341 DDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 50/303 (16%), Positives = 89/303 (29%), Gaps = 59/303 (19%)

Query: 416 FALEELTVNGNNFTG----SLPACLRNCSNLNRVRFDGNQFTGN----ITKAFGVHPRLD 467
           F++E  ++  +  T     S+ A L    ++  +   GN         +++       L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 468 FIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGK 527
               S               R L                 L    +L  + L  N     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPT 109

Query: 528 IPTDLGKLVK----LFNLNLSNNHLTGE-------------IPKSISNLTELAYLDLSNN 570
               L   +     L +L L NN L  +             + K   N   L  +    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 571 KLTGD----VPQELGRFDKLLSLNLSHNDLSGE-----IPSNLGNLFVLQYMLDLSSNSL 621
           +L         +       L ++ +  N +  E     +   L     L+  LDL  N+ 
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV-LDLQDNTF 228

Query: 622 SGT----IPQELGKLTSLEILNLSRNQLSGRIPASLSSMI------SLRSVDFSDNELTE 671
           +      +   L    +L  L L+   LS R  A++           L+++    NE+  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 672 LAV 674
            AV
Sbjct: 289 DAV 291

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 65/347 (18%), Positives = 106/347 (30%), Gaps = 70/347 (20%)

Query: 1   MGDLSELQYLSVYDNNLNG----AIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSM---- 52
           M   S ++  S+  + +      ++   L     V+ + L GN + T      S      
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 53  PSLTHLGL---YLNELTLEFP-------SFILTCRNLTYLDLSLNKLSGLIPERLFTNLG 102
             L        +   +  E P         +L C  L  + LS N       E L   L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 103 K---LEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN 159
           K   LE+L L  N     L P           ++A       +     +   L+ +    
Sbjct: 120 KHTPLEHLYLHNNG----LGPQAGA-------KIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 160 NSFTGQ----IPSSLGQLKNLQHLDLRMNALN-----YTIPPELGLCTNLSYLALAVNQL 210
           N            +    + L  + +  N +      + +   L  C  L  L L  N  
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 211 S--GGLPLS--LSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266
           +  G   L+  L +   L +LGL+D  L     A  +      ++     N         
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLL-SARGAAAVV-----DAFSKLEN--------- 273

Query: 267 IGLLTKLQYLFLYRNNFSGPIPSEI-----EKLTSLENLDLSGNQLS 308
                 LQ L L  N         +     EK+  L  L+L+GN+ S
Sbjct: 274 ----IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 27/154 (17%), Positives = 43/154 (27%), Gaps = 33/154 (21%)

Query: 538 LFNLNLSNNHLTGE----IPKSISNLTELAYLDLSNNKLTGDVPQELGRF----DKLLSL 589
           +   +L  + +T E    +   +     +  + LS N +  +  + L         L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 590 NLSHN---DLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
             S      +  EIP  L  L                   Q L K   L  + LS N   
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLL------------------QALLKCPKLHTVRLSDNAFG 107

Query: 647 GR----IPASLSSMISLRSVDFSDNELTELAVTM 676
                 +   LS    L  +   +N L   A   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 56  THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
           T L L  N+ TL  P  +   ++LT +DLS N++S L   + F+N+ +L  L L+ N+ +
Sbjct: 34  TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR 91

Query: 116 GKLSPNV-SKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNN 160
             + P     L +L  L L  N  S  +P G    +S L  + +  N
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTG 550
            L LD N+ +  +P EL N   L ++ L +N ++  +       + +L  L LS N L  
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 551 EIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL 589
            IP      L  L  L L  N ++  VP+  G F+ L +L
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISV-VPE--GAFNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 8   QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
             L +  N     +P +LS+ + +  +DL  N + T     FS+M  L  L L  N L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 68  EFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
             P      L   +L  L L  N +S  +PE  F +L  L +L +  N  
Sbjct: 92  CIPPRTFDGLK--SLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 35/124 (28%)

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL 587
           IP D+        L L  N  T  +PK +SN   L  +DLSNN+++         F  + 
Sbjct: 29  IPRDVT------ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS---TLSNQSFSNMT 78

Query: 588 SLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQLS 646
            L                        L LS N L   IP      L SL +L+L  N +S
Sbjct: 79  QLL----------------------TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115

Query: 647 GRIP 650
             +P
Sbjct: 116 -VVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW-NLTN 320
            IP        +  L+L  N F+  +P E+     L  +DLS N++S T+    + N+T 
Sbjct: 28  GIP------RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 321 LLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTN 377
           LL+L L  N L   IPP     + SL    ++ N +   +PE   + L  L+  ++  N
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPP----ELGLCTNLSYLAL 205
            ++  + L  N FT  +P  L   K+L  +DL  N ++ T+       +   T L  L L
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNM---TQLLTLIL 85

Query: 206 AVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235
           + N+L    P +   L  L  L L  N +S
Sbjct: 86  SYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGNQLSGTIPP-TLWNLT 319
           +    +     L  L++        +    +  L  L NL +  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 320 NLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
            L  L L  N L  ++  +     SL    ++ N LH
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 487 CRNLSNLQ-LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT-DLGKLVKLFNLNLS 544
               S L+      +       L     L  L +++ +    +   DL  L +L NL + 
Sbjct: 7   PHGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 545 NNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
            + L    P +      L+ L+LS N L   +  +  +   L  L LS N L
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 569 NNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQ 627
                 D    L   + L  L + +      +    L  L  L+  L +  + L   +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN-LTIVKSGLR-FVAP 73

Query: 628 E-LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT 670
           +       L  LNLS N L   +       +SL+ +  S N L 
Sbjct: 74  DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 551 EIPKSISNLTELAYLDLSNNKLTGDVPQE-LGRFDKLLSLNLSHNDLSGEIPSN-LGNLF 608
           +    +     L  L + N +    +    L    +L +L +  + L   +  +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 609 VLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQL 645
            L   L+LS N+L  ++  +  +  SL+ L LS N L
Sbjct: 81  RLSR-LNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
             +  L+    +    NLT L +   +    +  R    LG+L  L + ++  +  ++P+
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 122 V-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163
                  L  L L+ N     +        +LQ + L  N   
Sbjct: 75  AFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKL 273
              L     L +L + +      +    +    EL +L I  +     + P+      +L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQL 307
             L L  N     +  +  +  SL+ L LSGN L
Sbjct: 83  SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPS-SLGQLKNLQHLDLRMNALNYTIPPE-LGLCTN 199
               +    NL  + + N      +    L  L  L++L +  + L + + P+       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPR 81

Query: 200 LSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
           LS L L+ N L      ++  LS L +L LS N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 120 PNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
            ++    NL +L +   +    +   D+  +  L+ + +  +      P +      L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 179 LDLRMNALNYTIPPELGLCTNLSYLALAVNQL 210
           L+L  NAL  ++  +     +L  L L+ N L
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 593 HNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE-LGKLTSLEILNLSRNQLSGRIPA 651
             D + +   +L     L   L + +      +    L  L  L  L + ++ L    P 
Sbjct: 16  TRDGALDSLHHLPGAENLTE-LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 652 SLSSMISLRSVDFSDNELTEL 672
           +      L  ++ S N L  L
Sbjct: 75  AFHFTPRLSRLNLSFNALESL 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 166 IPSSLGQLKNLQHLDLRMNALNYTIPPE-LGLCTNLSYLALAVNQLSGGLPLSLSNLSKL 224
               L   +NL  L +        +    L     L  L +  + L    P +     +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 225 NDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259
           + L LS N L   +S   +   + L+ L +  N  
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 3   DLSELQYLSVYDNNLNGAIP-FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
               L  L + +      +    L  L ++R L +  + L       F   P L+ L L 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKL 89
            N L        +   +L  L LS N L
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 62.7 bits (151), Expect = 2e-10
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 24/210 (11%)

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV--KLFNLNLSNN 546
              ++  +   IS     +L  +    +  L++ ++ G     +GK     L +L + + 
Sbjct: 145 FWGDIDFEEQEISWIEQVDLSPVLD-AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG 203

Query: 547 HLTGEIPKSI--SNLTELAYLDL---SNNKLTGDVPQEL------GRFDKLLSLNLSHND 595
            L   + + I  S+L  L  L L     +                 RF  L  L +   +
Sbjct: 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 596 LSGEIPSNLGNLFVLQ--YMLDLSSNSLSGT----IPQELGKLTSLEILNLSRNQLSG-- 647
               +        +L     +D+S+  L+      +   + K+  L+ +N+  N LS   
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 648 --RIPASLSSMISLRSVDFSDNELTELAVT 675
              +  SL   I +      D++ +   +T
Sbjct: 324 KKELQKSLPMKIDVSDSQEYDDDYSYPMIT 353

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 18/187 (9%)

Query: 74  LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL 133
                   +D    ++S +    L   L  +  LN  + +    LS       NL  L +
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 134 ATNKFSGPIPGDIGS--MSNLQLVELFNNSFTGQIPSSLGQL---------KNLQHLDLR 182
            +      +  DI    + NL+ + L+           +             NL+ L + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 183 MNALNYTIPPELG---LCTNLSYLALAVNQLSGG----LPLSLSNLSKLNDLGLSDNFLS 235
                  +        +   L  + ++   L+      L   +  +  L  + +  N+LS
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 236 GEISANL 242
            E+   L
Sbjct: 321 DEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 47/219 (21%)

Query: 114 FQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLG-- 171
            Q  LSP +  +  L +L++   K +  +        NL+ +E+ +      +   +   
Sbjct: 160 EQVDLSPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 172 QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSD 231
            L NL+ L L +   +Y      G   +++               S      L  LG+ D
Sbjct: 217 DLPNLEKLVLYVGVEDY------GFDGDMNVFRPL---------FSKDRFPNLKWLGIVD 261

Query: 232 NFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG----PI 287
                 +    +                      E  +L +L+ + +     +      +
Sbjct: 262 AEEQNVVVEMFL----------------------ESDILPQLETMDISAGVLTDEGARLL 299

Query: 288 PSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNLLSLQ 325
              ++K+  L+ +++  N LS  +   L   L   + + 
Sbjct: 300 LDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 50  SSMPSLTHLGLYLNELTLEFPSFILTCR---NLTYLDLSLNKLSGLIPERLFTNLG---K 103
              P+L  LG+   E         L       L  +D+S   L+      L  ++     
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 104 LEYLNLTENQF 114
           L+++N+  N  
Sbjct: 309 LKFINMKYNYL 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 118/703 (16%), Positives = 218/703 (31%), Gaps = 197/703 (28%)

Query: 66  TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF-QGKLSPNVSK 124
             + P  IL+   + ++ +S + +SG    RLF  L  L        +F +  L  N   
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGT--LRLFWTL--LSKQEEMVQKFVEEVLRINYKF 93

Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS--FTGQIPSSLGQLKNLQHLDLR 182
           L + I  +    +     P  +  M   Q   L+N++  F      ++ +L+   +L LR
Sbjct: 94  LMSPI--KTEQRQ-----PSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQ--PYLKLR 141

Query: 183 MNALNYTIPPELGLCTNL--------SYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFL 234
             AL   + P   +   +        +++AL V                     +     
Sbjct: 142 -QAL-LELRPAKNVL--IDGVLGSGKTWVALDV----------------CLSYKVQCKM- 180

Query: 235 SGEIS-ANLIGNWTELES-LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE 292
             +I   NL  N    E+ L++              LL ++   +  R++ S  I   I 
Sbjct: 181 DFKIFWLNL-KNCNSPETVLEMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 293 KLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVN- 351
            + +                     L  LL  + + N L   +   + +  +  AF+++ 
Sbjct: 229 SIQA--------------------ELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSC 266

Query: 352 -----------TNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS 400
                      T+ L      +IS L   +     T +   S+     K+    ++    
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHIS-LDHHSM--TLTPDEVKSL---LLKY----LDCRPQ 316

Query: 401 NNSFSGELPHELCSG--FALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG--NQFTGNI 456
                 +LP E+ +     L             +   +R+        +D   +     +
Sbjct: 317 ------DLPREVLTTNPRRL-----------SIIAESIRD----GLATWDNWKHVNCDKL 355

Query: 457 TKAFGVHPRLDFIRLSGNQFVGEISPDWGECR----NLSNLQLDRNRISGGIPAELGNLT 512
           T           I  S N     + P   E R     LS      +     IP  L    
Sbjct: 356 TTI---------IESSLNV----LEPA--EYRKMFDRLSVFPPSAH-----IPTIL---- 391

Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
            L ++  D  +    +   + KL K   +       T  IP SI       YL+L   K+
Sbjct: 392 -LSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIP-SI-------YLEL---KV 437

Query: 573 TGDVPQELGRFDKLL-SLNLSHN-DLSGEIPSNLGNLFV--LQYMLDLSSNSLSGTIPQE 628
             +    L R   ++   N+    D    IP  L   F   + + L    +         
Sbjct: 438 KLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-------- 487

Query: 629 LGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMR-VTDKCDVFSF 687
             ++T   ++ L    L  +I    ++  +  S+    N L +L      + D    +  
Sbjct: 488 -ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI---LNTLQQLKFYKPYICDNDPKYER 543

Query: 688 GVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
            V A+   + +    LI S        D+L   L      + E
Sbjct: 544 LVNAILDFLPKIEENLICSKY-----TDLLRIALMAEDEAIFE 581

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGR-FDKLLSLNLSHNDLSGE 599
           + L+   +  +     +N      LDL   K+   V + LG   D+  +++ S N++  +
Sbjct: 2   VKLTAELIE-QAA-QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-K 56

Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG-RIPASLSSMIS 658
           +      L  L+  L +++N +          L  L  L L+ N L        L+S+ S
Sbjct: 57  L-DGFPLLRRLKT-LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 659 LRSVDFSDNELTEL 672
           L  +    N +T  
Sbjct: 115 LTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 486 ECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
                  L L   +I   I      L +   +    NE+  K+      L +L  L ++N
Sbjct: 17  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 546 NHLTGEIPKSISNLTELAYLDLSNNKLT--GDVPQELGRFDKLLSLNLSHN 594
           N +          L +L  L L+NN L   GD+   L     L  L +  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 217 SLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF--MGNIPPEIGLLTKLQ 274
             +N  +  +L L    +   I  NL     + +++   +N    +   P     L +L+
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLK 67

Query: 275 YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS--GTIPPTLWNLTNLLSLQLFSN 329
            L +  N          + L  L  L L+ N L   G + P L +L +L  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           +    + L +    +   I    ++L +   +D   N +   D   F  +  L  L +  
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNN 73

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
           N +            +LT L L+ N L  L       +L  L YL +  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/144 (21%), Positives = 45/144 (31%), Gaps = 15/144 (10%)

Query: 436 LRNCSNLNRVRFDGNQFT--GNITKAFGVHPRLDFIRLSGNQFVGEISP--DWGECRNLS 491
             N      +   G +     N+        + D I  S N    EI     +   R L 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATL---DQFDAIDFSDN----EIRKLDGFPLLRRLK 67

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG-KIPTDLGKLVKLFNLNLSNNHLTG 550
            L ++ NRI          L  L  L L +N L        L  L  L  L +  N +T 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127

Query: 551 EI---PKSISNLTELAYLDLSNNK 571
           +       I  + ++  LD    K
Sbjct: 128 KKHYRLYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 47  SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
           +++++      L L   ++     +   T      +D S N++  L     F  L +L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKT 68

Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI---GSMSNLQLVELFNNSFT 163
           L +  N+           L +L +L L  N       GD+    S+ +L  + +  N  T
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVT 126

Query: 164 GQI---PSSLGQLKNLQHLDLR 182
            +       + ++  ++ LD +
Sbjct: 127 NKKHYRLYVIYKVPQVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 29/151 (19%)

Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
           + LT    +   +   +      +L L   K        I  + NL              
Sbjct: 2   VKLTAELIE--QAAQYTNAVRDRELDLRGYK--------IPVIENLG------------- 38

Query: 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND 226
                 L     +D   N +   +     L   L  L +  N++          L  L +
Sbjct: 39  ----ATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNN 257
           L L++N L      + + +   L  L I  N
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKF 138
           T L L+ N+L  +  + LF  L  L  L L  NQ    + PN     S++ +L+L  NK 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
                     +  L+ + L++N  +  +P S   L +L  L+L  N  N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 32  RYLDLGGNFLET-PDWSKFSSMPSLTHLGLYLNELT-LEFPSF-ILTCRNLTYLDLSLNK 88
             L L  N L        F  +P L  L L  N+LT +E  +F   +  ++  L L  NK
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--HIQELQLGENK 89

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQ 115
           +  +   ++F  L +L+ LNL +NQ  
Sbjct: 90  IKEI-SNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSG 285
           L L+DN L    S  L G    L  L+++ N  +  I P      + +Q L L  N    
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 286 PIPSEI-EKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSN 329
            I +++   L  L+ L+L  NQ+S  + P +  +L +L SL L SN
Sbjct: 93  -ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 29/113 (25%)

Query: 540 NLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG 598
            L L++N L       +   L  L  L+L  N+LTG    E   F+    +         
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEGASHIQE------- 82

Query: 599 EIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQLSGRIP 650
                          L L  N +   I  ++   L  L+ LNL  NQ+S  + 
Sbjct: 83  ---------------LQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 247 TELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLS 303
                L + +N   G I  +     L  L  L L RN  +G I     E  + ++ L L 
Sbjct: 29  LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLG 86

Query: 304 GNQLSGTIPPTLWN-LTNLLSLQLFSNNLSGTIPP 337
            N++   I   ++  L  L +L L+ N +S  + P
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLW-NLTN 320
           IP +I L T    L L  N         +  +L  L  L+L  NQL+  I P  +   ++
Sbjct: 23  IPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 321 LLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQL 355
           +  LQL  N +   I  ++   +  L   ++  NQ+
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 523 ELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGR 582
           E    + T+     +   L+     +  ++  ++S L    +L LS N +       L  
Sbjct: 16  ERKSVVATEA----EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE--KISSLSG 68

Query: 583 FDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSR 642
            + L  L+L  N +  +I  NL  +      L +S N ++ ++   + KL +L +L +S 
Sbjct: 69  MENLRILSLGRNLIK-KI-ENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSN 124

Query: 643 NQLSG-RIPASLSSMISLRSVDFSDNELTE 671
           N+++       L+++  L  +  + N L  
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 32/155 (20%)

Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI 552
           L      I   + A L  L     L+L +N +  KI + L  +  L  L+L  N +    
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI---- 82

Query: 553 PKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQY 612
            K I NL  +                     D L  L +S+N ++  + S +  L  L+ 
Sbjct: 83  -KKIENLDAV--------------------ADTLEELWISYNQIA-SL-SGIEKLVNLRV 119

Query: 613 MLDLSSNSLSG-TIPQELGKLTSLEILNLSRNQLS 646
            L +S+N ++      +L  L  LE L L+ N L 
Sbjct: 120 -LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 487 CRNLSNLQLDRNRIS---GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNL 543
            +   +L L  N I          L  +  L +LSL  N +  KI         L  L +
Sbjct: 47  LKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100

Query: 544 SNNHLTGEIPKSISNLTELAYLDLSNNKLT--GDVPQELGRFDKLLSLNLSHN 594
           S N +   +   I  L  L  L +SNNK+T  G++  +L   DKL  L L+ N
Sbjct: 101 SYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 555 SISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYML 614
             +   ++  L      +   +   L        L LS N++  +I S+L  +  L+  L
Sbjct: 21  VATEAEKVE-LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRI-L 75

Query: 615 DLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
            L  N +   I        +LE L +S NQ++  + + +  +++LR +  S+N++T  
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNW 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 53/190 (27%)

Query: 21  IPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLT 80
           +   LS+L+  ++L L  N            + SL+ +                   NL 
Sbjct: 40  MDATLSTLKACKHLALSTN--------NIEKISSLSGM------------------ENLR 73

Query: 81  YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSG 140
            L L  N +  +  E L      LE L ++ NQ    LS  + KL NL  L ++ NK   
Sbjct: 74  ILSLGRNLIKKI--ENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNK--- 126

Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
                I +   +                 L  L  L+ L L  N L              
Sbjct: 127 -----ITNWGEID---------------KLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166

Query: 201 SYLALAVNQL 210
             +   +  L
Sbjct: 167 IEVVKRLPNL 176

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKL 273
           +  +LS L     L LS N +  +IS+  +     L  L +  N     I     +   L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 274 QYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG-TIPPTLWNLTNLLSLQLFSNNLS 332
           + L++  N  +    S IEKL +L  L +S N+++       L  L  L  L L  N L 
Sbjct: 96  EELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 333 GTIPPE 338
                 
Sbjct: 154 NDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 455 NITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRL 514
            +            + LS N    +IS       NL  L L RN I   I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT--GEIPKSISNLTELAYLDLSNNKL 572
             L +  N++   + + + KLV L  L +SNN +T  GEI   ++ L +L  L L+ N L
Sbjct: 96  EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPL 152

Query: 573 TGDVPQELGRFD 584
             D  +     +
Sbjct: 153 YNDYKENNATSE 164

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 48  KFSSMPS-----LTHLGLYLNELT-LEFPSF-ILTCRNLTYLDLSLNKLSGLIPERLFTN 100
             +S+P+      T L L  N+L  L    F  LT   LT L LS N++  L P+ +F  
Sbjct: 18  GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSQNQIQSL-PDGVFDK 74

Query: 101 LGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN 159
           L KL  L L EN+ Q  L   V  KL+ L +L L TN+      G    +++LQ + L  
Sbjct: 75  LTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133

Query: 160 N 160
           N
Sbjct: 134 N 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTG 550
            L+L+ N++          LT+L  LSL  N++   +P  +  KL KL  L L  N L  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ- 89

Query: 551 EIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL 589
            +P  +   LT+L  L L  N+L   VP   G FD+L SL
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKS-VPD--GIFDRLTSL 126

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFI---LTCRNLTYLDLSLNK 88
             L+L  N L++     F  +  LT L L  N++    P  +   LT   LT L L  NK
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT--KLTILYLHENK 87

Query: 89  LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATN 136
           L  L P  +F  L +L+ L L  NQ +        +L++L  + L TN
Sbjct: 88  LQSL-PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
           GIP+          L L+SN+L         KL +L  L+LS N +          LT+L
Sbjct: 25  GIPSS----AT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 563 AYLDLSNNKLTGDVPQELGRFDKLLSL---NLSHNDL 596
             L L  NKL   +P   G FDKL  L    L  N L
Sbjct: 79  TILYLHENKLQS-LPN--GVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 8   QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
             L +  N L          L ++  L L  N +++     F  +  LT L L+ N+L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ- 89

Query: 68  EFPSFI---LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113
             P+ +   LT   L  L L  N+L   +P+ +F  L  L+ + L  N 
Sbjct: 90  SLPNGVFDKLT--QLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 33/119 (27%)

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL 587
           IP+          L L +N L          LT+L  L LS N++   +P   G FDKL 
Sbjct: 26  IPSSAT------RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD--GVFDKLT 76

Query: 588 SLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL-GKLTSLEILNLSRNQL 645
            L                       +L L  N L  ++P  +  KLT L+ L L  NQL
Sbjct: 77  KLT----------------------ILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTN 320
            IP      +    L L  N          +KLT L  L LS NQ+  ++P  +++ LT 
Sbjct: 25  GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 321 LLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN 377
           L  L L  N L  ++P  +   +  L    ++TNQL         RL  L K  + TN
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 486 ECRNLSNLQLDRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLS 544
              ++  L LD +R + G +         L  LS  +  LT  I  +L KL KL  L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 545 NNHLTGEIPKSISNLTELAYLDLSNNKLTG-DVPQELGRFDKLLSLNLSHN 594
           +N ++G +         L +L+LS NK+      + L + + L SL+L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%)

Query: 554 KSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYM 613
           ++ S++ EL  LD S +   G +      F++L  L+  +  L+  I +NL  L  L+  
Sbjct: 14  RTPSDVKEL-VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKK- 68

Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG-RIPASLSSMISLRSVDFSDNELTEL 672
           L+LS N +SG +     K  +L  LNLS N++        L  + +L+S+D  + E+T L
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 3   DLSELQYLSVYDNNLN-GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             S+++ L + ++  N G +        ++ +L      L     +    +  L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
            N ++         C NLT+L+LS NK+  L        L  L+ L+L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 510 NLTRLGVLSLDSNELT-GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNL---TELAYL 565
             + +  L LD++    GK+     +  +L  L+  N  LT     SI+NL    +L  L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 566 DLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSG 623
           +LS+N+++G +     +   L  LNLS N +      +L  +  L+ + +L S  L  
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 437 RNCSNLNRVRFDGNQFT-GNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495
           R  S++  +  D ++   G +         L+F+       +  I+ +  +   L  L+L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIA-NLPKLNKLKKLEL 71

Query: 496 DRNRISGGIPAELGNLTRLGVLSLDSNELTG-KIPTDLGKLVKLFNLNLSNNHLTGEI-- 552
             NR+SGG+         L  L+L  N++        L KL  L +L+L N  +T     
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 553 -PKSISNLTELAYLD 566
                  L +L YLD
Sbjct: 132 RENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 148 SMSNLQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA 206
           + S+++ + L N+    G++     + + L+ L      L  T    L     L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELS 72

Query: 207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
            N++SGGL +       L  L LS N +    +   +     L+SL + N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETP-DWSKFSSMPSLTHLGLYL 62
           L++L+ L + DN ++G +         + +L+L GN ++          + +L  L L+ 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 63  NELTLEF---PSFILTCRNLTYLD 83
            E+T       +       LTYLD
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 27/135 (20%)

Query: 75  TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLA 134
           T  ++  L L  ++ +    E L     +LE+L+             ++ ++NL      
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--------GLTSIANL------ 60

Query: 135 TNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL-NYTIPPE 193
                         ++ L+ +EL +N  +G +     +  NL HL+L  N + + +    
Sbjct: 61  ------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 194 LGLCTNLSYLALAVN 208
           L    NL  L L   
Sbjct: 109 LKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 554 KSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYM 613
           ++ + + EL  LD   +   G +      F  L  L+L +  L   + SNL  L  L+  
Sbjct: 21  RTPAAVREL-VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKK- 75

Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG-RIPASLSSMISLRSVDFSDNELTEL 672
           L+LS N + G +     KL +L  LNLS N+L        L  +  L+S+D  + E+T L
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 489 NLSNLQLDRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
            +  L LD  + + G I         L  LSL +  L   + ++L KL KL  L LS N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENR 82

Query: 548 LTGEIPKSISNLTELAYLDLSNNKLT--GDVPQELGRFDKLLSLNLSHN 594
           + G +      L  L +L+LS NKL     + + L + + L SL+L + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 32/160 (20%)

Query: 517 LSLDSNELT-GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGD 575
           L LD+ +   GKI     + V L  L+L N  L   +  ++  L +L  L+LS N++ G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGG 86

Query: 576 VPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSL 635
           +     +   L  LNLS N L      ++  L                   + L KL  L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKL-----KDISTL-------------------EPLKKLECL 122

Query: 636 EILNLSRNQLSGRIPASLSSMI----SLRSVDFSDNELTE 671
           + L+L   +++  +     S+      L  +D  D E  E
Sbjct: 123 KSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 15  NNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFIL 74
            + +G I    +    + +L L    L     S    +P L  L L  N +         
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 75  TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
              NLT+L+LS NKL  +        L  L+ L+L   
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG 212
           +LV     S  G+I     +  NL+ L L    L  ++   L     L  L L+ N++ G
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFG 85

Query: 213 GLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
           GL +    L  L  L LS N L    +   +     L+SL + N 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETP-DWSKFSSMPSLTHLGLYL 62
           L +L+ L + +N + G +      L  + +L+L GN L+          +  L  L L+ 
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 63  NELTLEFPSF----ILTCRNLTYLD 83
            E+T     +          LTYLD
Sbjct: 130 CEVT-NLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 53  PSLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
            ++  L L   +    +         NL +L L    L  +        L KL+ L L+E
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSE 80

Query: 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI---GSMSNLQLVELFNNSFTGQI-- 166
           N+  G L     KL NL  L L+ NK        +     +  L+ ++LFN   T     
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 167 -PSSLGQLKNLQHLDLRMN 184
             S    L  L +LD    
Sbjct: 139 RESVFKLLPQLTYLDGYDR 157

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 52/321 (16%), Positives = 100/321 (31%), Gaps = 33/321 (10%)

Query: 7   LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPD------WSKFSSMPSLTHLGL 60
           L+ L +        +   L    ++  L  GG   E             S    L  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
           + + +    P+    C  LT L+LS   +      +L     KL+ L + +      L  
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 121 NVSKLSNLIDLRLATNKFSGPIP----GDIG------SMSNLQLVELFNNSFTGQIPSSL 170
             S   +L +LR+  ++     P     + G          L+ V  F    T     ++
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392

Query: 171 GQ-LKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGL 229
            +   N+    L              +    +   L +  L  G    + +   L  L L
Sbjct: 393 ARNRPNMTRFRLC-------------IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

Query: 230 SDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNNFSGP-I 287
           S   L+ ++   +     ++E L +            +      L+ L +    F    +
Sbjct: 440 S-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498

Query: 288 PSEIEKLTSLENLDLSGNQLS 308
            +   KL ++ +L +S   +S
Sbjct: 499 LANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 75/556 (13%), Positives = 153/556 (27%), Gaps = 76/556 (13%)

Query: 74  LTCR------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
           L C+            + +     + P  +     K+  + L         +        
Sbjct: 32  LVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG 91

Query: 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ-LKNLQHLDLRMNAL 186
            +   +     S            L+ + L     T      + +  KN + L L     
Sbjct: 92  YVYPWIEAMSSSYT---------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS--- 139

Query: 187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW 246
                     C   S   LA       +  +  NL +L+      + +SG   ++    +
Sbjct: 140 ----------CEGFSTDGLAA------IAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 247 TELESLQIQNNSFM---GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS 303
           T L SL I   +       +   +     L+ L L R      + + +++   LE L   
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 304 GNQLSGT------IPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG 357
           G            +   L     L  L  F + +   +P      + L   +++   +  
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 358 E-LPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGF 416
             L + + +  KL +  V        +          L  +    +      P+   +  
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEV-LASTCKDLRELRVFPSEPFVMEPNVALTEQ 362

Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH-PRLDFIRLSGNQ 475
            L  +                 C  L  V +   Q T         + P +   RL   +
Sbjct: 363 GLVSV--------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408

Query: 476 FVGEISPDWGE-----------CRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
                                 C++L  L L                 ++ +LS+     
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD 468

Query: 525 TGKIPTDLGK-LVKLFNLNLSNNHLTGE-IPKSISNLTELAYLDLSNNKLTGDVPQELGR 582
           +      +      L  L + +     + +  + S L  +  L +S+  ++    + LG+
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528

Query: 583 FDKLLSLNLSHNDLSG 598
             K+  LN+   D  G
Sbjct: 529 --KMPKLNVEVIDERG 542

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 75/557 (13%), Positives = 157/557 (28%), Gaps = 67/557 (12%)

Query: 49  FSSMPSLTHLGLYLNELTLEFPSFILT----CRNLTYLDLSLNKLSGLIPERLFTNLGKL 104
               P      L  +        +I         L  + L    ++    E +  +    
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNF 132

Query: 105 EYLNLTE-NQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL--QLVELFNN 160
           + L L+    F    L+   +   NL +L L  +         +    +    LV L  +
Sbjct: 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS 192

Query: 161 SFTGQI-PSSLGQL----KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV------NQ 209
               ++  S+L +L     NL+ L L        +   L     L  L            
Sbjct: 193 CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252

Query: 210 LSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN-IPPEIG 268
           +  GL ++LS   +L  L    + +   + A +    + L +L +   +     +   + 
Sbjct: 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLC 311

Query: 269 LLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFS 328
              KLQ L++        +         L  L +  ++     P        L+S+ +  
Sbjct: 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371

Query: 329 NNLSGTIPPEIGSMASLVAFDVN-TNQLHGELPENISRLVKLN-------KFSVFTNNFS 380
             L            S++ F    TN     +  N   + +              T    
Sbjct: 372 PKLE-----------SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420

Query: 381 GSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTG-SLPACLRNC 439
               G   +    L  +S S         +       +E L+V     +   +   L  C
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR 499
            +L ++      F      A                              + +L +    
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASK-----------------------LETMRSLWMSSCS 517

Query: 500 IS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISN 558
           +S G        + +L V  +D          +   + ++F +  +      ++P  + N
Sbjct: 518 VSFGACKLLGQKMPKLNVEVIDERGAPD-SRPESCPVERVF-IYRTVAGPRFDMPGFVWN 575

Query: 559 LTELAYLDLSNNKLTGD 575
           + + + +  S   +T +
Sbjct: 576 MDQDSTMRFSRQIITTN 592

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 74/483 (15%), Positives = 149/483 (30%), Gaps = 53/483 (10%)

Query: 16  NLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLE-FPSFIL 74
            L G   F   +L    +      ++E    +  SS   L  + L    +T +       
Sbjct: 72  ELKGKPHFADFNLVPDGWGGYVYPWIE----AMSSSYTWLEEIRLKRMVVTDDCLELIAK 127

Query: 75  TCRNLTYLDLS-LNKLSGLIPERLFTNLGKLEYLNLTENQFQGK----LSPNVSKLSNLI 129
           + +N   L LS     S      +      L+ L+L E+         LS      ++L+
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 130 DLRLATNKFSGPIPGDIG------SMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
            L +  +  +  +              NL+ ++L       ++ + L +   L+ L    
Sbjct: 188 SLNI--SCLASEV-SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 184 NALNYT------IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE 237
                       +   L  C  L  L+   + +   LP   S  S+L  L LS   +   
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 238 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE------- 290
               L+    +L+ L + +      +         L+ L ++ +      P+        
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 291 ---IEKLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346
                    LE++     Q++     T+  N  N+   +L            +  +    
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424

Query: 347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406
                       + E+   L +L+   + T+     I    G ++  +  +S +    S 
Sbjct: 425 GA----------IVEHCKDLRRLSLSGLLTDKVFEYI----GTYAKKMEMLSVAFAGDSD 470

Query: 407 ELPHELCSG-FALEELTVNGNNFTG-SLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH- 463
              H + SG  +L +L +    F   +L A       +  +       +    K  G   
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530

Query: 464 PRL 466
           P+L
Sbjct: 531 PKL 533

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 61/316 (19%), Positives = 106/316 (33%), Gaps = 68/316 (21%)

Query: 25  LSSLRKVRYLDLGGNFLETPDWSKFSSM-----PSLTHLGLYLNELTLE-----FPSFIL 74
            S    V  LDL  N L +    +          S+T L L  N L  +           
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 75  TCRNLTYLDLSLNKLSG----LIPERLFTNLGKLEYLNLTENQFQGK----LSPNVSKL- 125
              N+T L+LS N LS      + + L      +  L+L  N F  K         S L 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
           +++  L L  N         +G  S+ +L+++                 N+  L+LR N 
Sbjct: 138 ASITSLNLRGND--------LGIKSSDELIQILAAIPA-----------NVNSLNLRGNN 178

Query: 186 LNYTIPPELG-----LCTNLSYLALAVNQL--SGGLPLS---LSNLSKLNDLGLSDNFLS 235
           L      EL      +  +++ L L+ N L       L+    S  + +  L L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 236 GEIS---ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE 292
           G        L  +   L+++ +  +    N+  E     + + L            +   
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKE-----QCKALG-----------AAFP 281

Query: 293 KLTSLENLDLSGNQLS 308
            +  +  +D +G ++ 
Sbjct: 282 NIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 23/152 (15%)

Query: 543 LSNNHLTGE----IPKSISNLTELAYLDLSNNKLTGDVPQELGR-----FDKLLSLNLSH 593
           ++           + +  S    +  LDLS N L      EL +        + SLNLS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 594 NDLSGEIPSNLGNLFVLQY----MLDLSSNSLSGTIPQELGKL-----TSLEILNLSRNQ 644
           N L  +    L  +          L+LS N LS     EL K       ++ +L+L  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 645 LSGRIPASLSSMI-----SLRSVDFSDNELTE 671
            S +  +           S+ S++   N+L  
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 51/334 (15%), Positives = 106/334 (31%), Gaps = 47/334 (14%)

Query: 389 KFSPSLINVSFSNNSFSGELPHELCSGFA-----LEELTVNGNNFT----GSLPACLR-N 438
                + ++  S N+       EL   FA     +  L ++GN+        L   L   
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 439 CSNLNRVRFDGNQFTGNITKAFG-----VHPRLDFIRLSGNQFVGEISPDWGE-----CR 488
            +N+  +   GN  +   +         +   +  + L  N F  + S ++ +       
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 489 NLSNLQLDRNRISGGIPAELGNL-----TRLGVLSLDSNELTGKIPTDLGKLVKLFN--- 540
           ++++L L  N +      EL  +       +  L+L  N L  K   +L K +       
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 541 --LNLSNNHLTGEIPKSIS-----NLTELAYLDLSNNKLTGDVPQELGRFDK----LLSL 589
             L+LS N L  +    ++         +  L+L  N L G   + L         L ++
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 590 NLSHNDLSG-------EIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSR 642
            L ++ +          + +   N+  +  ++D +   +  +    +  L          
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKII-LVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 643 NQLSGRIPASLSSMISLRSVDFSDNELTELAVTM 676
             L  +         +        +EL E   T 
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTE 561
           GIP      T    L L++N++T   P     LV L  L  ++N LT  IP  +   LT+
Sbjct: 30  GIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSL 589
           L  LDL++N L   +P+  G FD L SL
Sbjct: 83  LTQLDLNDNHLKS-IPR--GAFDNLKSL 107

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 48  KFSSMPS-----LTHLGLYLNELT-LEFPSF-ILTCRNLTYLDLSLNKLSGLIPERLFTN 100
           + +S+P+        L L  N++T LE   F  L   NL  L  + NKL+ + P  +F  
Sbjct: 23  RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLV--NLQQLYFNSNKLTAI-PTGVFDK 79

Query: 101 LGKLEYLNLTENQFQ 115
           L +L  L+L +N  +
Sbjct: 80  LTQLTQLDLNDNHLK 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFI---LTCRNLTYLDLSLNK 88
           + L L  N +   +   F  + +L  L    N+LT   P+ +   LT   LT LDL+ N 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT--QLTQLDLNDNH 92

Query: 89  LSGLIPERLFTNLGKLEYLNLTEN 112
           L   IP   F NL  L ++ L  N
Sbjct: 93  LKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLF 327
           L  LQ L+   N  +  IP+ + +KLT L  LDL+ N L  +IP   + NL +L  + L+
Sbjct: 56  LVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLY 113

Query: 328 SN 329
           +N
Sbjct: 114 NN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW-NLTNL 321
           +P  I   T  Q L+L  N  +   P   + L +L+ L  + N+L+  IP  ++  LT L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 322 LSLQLFSNNL 331
             L L  N+L
Sbjct: 84  TQLDLNDNHL 93

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 6e-07
 Identities = 69/551 (12%), Positives = 142/551 (25%), Gaps = 90/551 (16%)

Query: 74  LTCR------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
           L CR      + T   +++       P+RL      L  L L         +        
Sbjct: 39  LVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG 98

Query: 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ--LKNLQHLDLRMNA 185
            +   +              ++  L+ V       +      L +    +L+ L L   +
Sbjct: 99  YVTPWVTE---------ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149

Query: 186 L--NYTIPPELGLCTNLSYLALAVNQLS-------GGLPLSLSNLSKLNDLGLSDNFLSG 236
                 +   +  C  +  L +  +  S         L    ++L  LN        +S 
Sbjct: 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209

Query: 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTS 296
           +    +  N   L S+++ +   +  +         L+       N    +P +   L  
Sbjct: 210 KDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268

Query: 297 LENLDLSGNQLSG--TIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQ 354
              L   G    G   +P        +  L     +L                       
Sbjct: 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKL-----DLL------------------YALL 305

Query: 355 LHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL--INVSFSNNSFSGELPHEL 412
              +    I +   L       N           ++   L  + +    +    E    L
Sbjct: 306 ETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 413 CSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH-PRLDFIRL 471
            S   L  L               + C  L  +    +  T    ++ G +   L   RL
Sbjct: 365 VSQRGLIAL--------------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410

Query: 472 SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL--DSNELTGKIP 529
                             +++L LD      G+ + L    +L   +       LT    
Sbjct: 411 V----------LLDREERITDLPLDN-----GVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 530 TDLGKLVK-LFNLNLSNNHLTGE-IPKSISNLTELAYLDLSNNKLTGD-VPQELGRFDKL 586
           + +G+    +  + L     + E + +       L  L++     +   +   + +   L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515

Query: 587 LSLNLSHNDLS 597
             L +     S
Sbjct: 516 RYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 54/303 (17%), Positives = 85/303 (28%), Gaps = 33/303 (10%)

Query: 25  LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
            ++L +     L  +      +        L  LGL       E P        +  LDL
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL-SYMGPNEMPILFPFAAQIRKLDL 300

Query: 85  SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
               L       L      LE L          L         L  LR+        +  
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360

Query: 145 DIGSMS------------NLQLVELFNNSFTGQIPSSLGQ-LKNLQHLDLRMNALNYTIP 191
           + G +S             L+ + ++ +  T +   S+G  LKNL    L          
Sbjct: 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV--------- 411

Query: 192 PELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDN--FLSGEISANLIGNWTEL 249
             L     ++ L      L  G+   L    KL           L+    + +      +
Sbjct: 412 -LLDREERITDLP-----LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465

Query: 250 ESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNNFSGP-IPSEIEKLTSLENLDLSGNQL 307
             + +           E       LQ L +    FS   I + + KL SL  L + G + 
Sbjct: 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 308 SGT 310
           S T
Sbjct: 526 SMT 528

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 16/114 (14%)

Query: 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG-------------ELITSLSGELFLKDV 716
             +        + D+++ G+V  E+                    E+    S E   + V
Sbjct: 207 GAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVV 266

Query: 717 LDQRL---PPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAY 767
           + ++         Q    + +       C     + R S   V + ++   +  
Sbjct: 267 VHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT 320

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTG---QLAEAVVLT 735
            +K DVFSFG+V  E++   +        + +  L          P              
Sbjct: 200 DEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFP----- 254

Query: 736 INVALACTSTTPDTRPSMRFVAQEL 760
             + + C    P+ RPS   +   L
Sbjct: 255 --ITVRCCDLDPEKRPSFVKLEHWL 277

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 18/194 (9%)

Query: 487 CRNLSNLQLDRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
              + ++ L  + I    +   L   ++L  LSL+   L+  I   L K   L  LNLS 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 546 -NHLTGEIPKSI-SNLTELAYLDLSN-NKLTGDVPQELGRF--DKLLSLNLS--HNDLSG 598
            +  +    +++ S+ + L  L+LS     T    Q       + +  LNLS    +L  
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 599 E----IPSNLGNLFVLQYMLDLSS-NSLSGTIPQELGKLTSLEILNLSR-NQLSGRIPAS 652
                +     NL      LDLS    L     QE  +L  L+ L+LSR   +       
Sbjct: 212 SDLSTLVRRCPNLVH----LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 653 LSSMISLRSVDFSD 666
           L  + +L+++    
Sbjct: 268 LGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 28/234 (11%)

Query: 411 ELCSGFALEELTVNGNNFT-GSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFI 469
           E  S F ++ + ++ +     +L   L  CS L  +  +G + +  I      +  L  +
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 470 RLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRL---GVLSLDSNELTG 526
            LSG             C   S   L        + +    L  L            +  
Sbjct: 148 NLSG-------------CSGFSEFALQT------LLSSCSRLDELNLSWCFDFTEKHVQV 188

Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS-NLTELAYLDLSN-NKLTGDVPQELGRFD 584
            +      + +L NL+    +L      ++      L +LDLS+   L  D  QE  + +
Sbjct: 189 AVAHVSETITQL-NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247

Query: 585 KLLSLNLSH-NDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEI 637
            L  L+LS   D+  E    LG +  L+  L +      GT+      L  L+I
Sbjct: 248 YLQHLSLSRCYDIIPETLLELGEIPTLKT-LQVFGIVPDGTLQLLKEALPHLQI 300

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
           ++KCDVFS+G++  EV+  R P + I   +  +        R P     L + +   +  
Sbjct: 181 SEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKN-LPKPIESLMT- 238

Query: 739 ALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQK 785
              C S  P  RPSM  + + ++     Y P   + ++     SL  
Sbjct: 239 --RCWSKDPSQRPSMEEIVKIMT-HLMRYFPGADEPLQYPCQHSLPP 282

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 48  KFSSMPS-----LTHLGLYLNELT-LEFPSF-ILTCRNLTYLDLSLNKLSGLIPERLFTN 100
             +S+P+        L LY N++T LE   F  LT   LT LDL  N+L+ L P  +F  
Sbjct: 20  SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLT--QLTRLDLDNNQLTVL-PAGVFDK 76

Query: 101 LGKLEYLNLTENQFQ 115
           L +L  L+L +NQ +
Sbjct: 77  LTQLTQLSLNDNQLK 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 32  RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFI---LTCRNLTYLDLSLNK 88
           + L L  N +   +   F  +  LT L L  N+LT   P+ +   LT   LT L L+ N+
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT--QLTQLSLNDNQ 89

Query: 89  LSGLIPERLFTNLGKLEYLNLTEN 112
           L   IP   F NL  L ++ L  N
Sbjct: 90  LKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT---DLGKLVKLFNLNLSN 545
               L L  N+I+   P     LT+L  L LD+N+LT  +P    D  KL +L  L+L++
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD--KLTQLTQLSLND 87

Query: 546 NHLTGEIPKSI-SNLTELAYLDLSNN 570
           N L   IP+    NL  L ++ L NN
Sbjct: 88  NQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN-LTNLLSLQL 326
           G+ T  Q L+LY N  +   P   ++LT L  LDL  NQL+  +P  +++ LT L  L L
Sbjct: 27  GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85

Query: 327 FSNNL 331
             N L
Sbjct: 86  NDNQL 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEI-EKLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLF 327
           LT+L  L L  N  +  +P+ + +KLT L  L L+ NQL  +IP   + NL +L  + L 
Sbjct: 53  LTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLL 110

Query: 328 SN 329
           +N
Sbjct: 111 NN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL 587
           IPT          L L +N +T   P     LT+L  LDL NN+LT  +P   G FDKL 
Sbjct: 28  IPTTTQ------VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPA--GVFDKLT 78

Query: 588 SL---NLSHNDL 596
            L   +L+ N L
Sbjct: 79  QLTQLSLNDNQL 90

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVL 734
              +K DV+SFGV+  E+   + P   +        +  V  +  RL  P   L   V  
Sbjct: 215 PSNEKSDVYSFGVILWELATLQQPWGNLNPAQ---VVAAVGFKCKRLEIPRN-LNPQVAA 270

Query: 735 TINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEP 771
            I     C +  P  RPS   +   L    ++ +P P
Sbjct: 271 IIE---GCWTNEPWKRPSFATIMDLLRPLIKSAVPPP 304

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 541 LNLSNNHLTGEIPKSI-----SNLTELAYLDLSNNKLTGDVPQELGR-FDKLLSLNLSHN 594
           LNL+   +T      +     S    L  ++L++ +L     + L   F +   L L  N
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 595 DLSGEIPSNLG-----NLFVLQYMLDLSSNSLSGT----IPQELGKLTSLEILNLSRNQL 645
            L  E   +L      +   +   L LS+N L+      + + L   TS+  L+L    L
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITT-LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

Query: 646 SGR----IPASLSSMISLRSVDFSDNELTE 671
                  + A L     L+ ++ + N   +
Sbjct: 196 GDEGLELLAAQLDRNRQLQELNVAYNGAGD 225

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 24/182 (13%)

Query: 488 RNLSNLQLDRNRISGGIPAELG-----NLTRLGVLSLDSNELTGKIPTDLGK-LVKLFNL 541
            +L  L L   R++      +          L  ++L S +L       L    ++   L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 542 NLSNNHLTGEIPKSIS-----NLTELAYLDLSNNKLTGDVPQELGRF----DKLLSLNLS 592
            L  N L  E  K +      +  ++  L LSNN LT      L         +  L+L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 593 HNDLSGE----IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL----TSLEILNLSRNQ 644
           H  L  E    + + L     LQ  L+++ N    T    L +      SLE+L+L  N+
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQE-LNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 645 LS 646
           LS
Sbjct: 251 LS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 32/261 (12%), Positives = 68/261 (26%), Gaps = 45/261 (17%)

Query: 418 LEELTVNGNNFTG----SLPACLRNCSNLNRVRFDGNQFTGNITKAFG-----VHPRLDF 468
           L+E+ +           +L         L       N       K           ++  
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLG---LQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 469 IRLSGNQF----VGEISPDWGECRNLSNLQLDRNRISGG----IPAELGNLTRLGVLSLD 520
           +RLS N      V  +        ++++L L    +       + A+L    +L  L++ 
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 521 SNELTGKIPTDLGKLVK----LFNLNLSNNHLT-------GEIPKSISNLTELAYLDLSN 569
            N         L +  +    L  L+L  N L+        ++  +      +       
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 570 NKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL 629
             ++      L    ++     S +    +    L          DL  +  +   P   
Sbjct: 280 TAVSEYWSVILS---EVQRNLNSWDRARVQRHLELLLR-------DLEDSRGATLNPWRK 329

Query: 630 GKL----TSLEILNLSRNQLS 646
            +L      +  L        
Sbjct: 330 AQLLRVEGEVRALLEQLGSSG 350

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-----RLPPP 724
           E     R + + DV+SFG++  E    G  P   ++        +   +      RLP P
Sbjct: 285 EALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS-------NQQTREFVEKGGRLPCP 337

Query: 725 TGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAY 767
                    L       C +  P  RPS   + QEL +  + +
Sbjct: 338 ELCPDAVFRLM----EQCWAYEPGQRPSFSTIYQELQSIRKRH 376

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVL 734
             T+K D +SF ++   ++ G  P +  +    + F+  + ++  R   P         +
Sbjct: 204 SYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK-FINMIREEGLRPTIPEDCPPRLRNV 262

Query: 735 TINVALACTSTTPDTRPSMRFVAQEL 760
            I     C S  P  RP   ++ +EL
Sbjct: 263 -IE---LCWSGDPKKRPHFSYIVKEL 284

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVL 734
             +   DV+S+GV+  E++ G  P   I  L+       V      LP P+    E    
Sbjct: 190 MFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA---VAYGVAMNKLALPIPST-CPEPFAK 245

Query: 735 TINVALACTSTTPDTRPSMRFVAQEL 760
            +     C +  P +RPS   +  +L
Sbjct: 246 LME---DCWNPDPHSRPSFTNILDQL 268

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTI 736
             + + DV++FG+V  E+M G+ P   I +   +  ++ V    L P   ++       +
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQLPYSNINNR--DQIIEMVGRGSLSPDLSKVRSNCPKRM 258

Query: 737 -NVALACTSTTPDTRPSMRFVAQEL 760
             +   C     D RPS   +  E+
Sbjct: 259 KRLMAECLKKKRDERPSFPRILAEI 283

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
           +   DVF+ G +  E+     P +   +    +  +     +       + + +   +  
Sbjct: 221 SKHSDVFALGTIWYELHAREWPFKTQPAE--AIIWQMGTGMKPNLSQIGMGKEISDIL-- 276

Query: 739 ALACTSTTPDTRPSMRFVAQELSA--KTQAYLPEPLDTMRISKL 780
            L C +   + RP+   +   L    K    L  P    + ++L
Sbjct: 277 -LFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHPGHFWKSAEL 319

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 24/133 (18%)

Query: 537 KLFNLNLSN-NHLTGEIPKSISNL----TELAYLDLSNNKLTGDVPQELGRFDK----LL 587
            L  +NL+N  ++     K+ +      T +    +   +    V   L    K    L 
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96

Query: 588 SLNLSHNDLSGE--------IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL----TSL 635
           SLN+  N +SG         + SN  +L  L+  +D  S  L   +  E+  +    T+L
Sbjct: 97  SLNVESNFISGSGILALVEALQSN-TSLIELR--IDNQSQPLGNNVEMEIANMLEKNTTL 153

Query: 636 EILNLSRNQLSGR 648
                   Q   R
Sbjct: 154 LKFGYHFTQQGPR 166

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)

Query: 679 TDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-----RLPPPTGQLAEAV 732
           + K DV+SFGV+  EV   G+ P E  +         +V++      RL  P    A   
Sbjct: 183 SSKSDVWSFGVLMWEVFSEGKIPYENRS-------NSEVVEDISTGFRLYKPRL--ASTH 233

Query: 733 VLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYL 768
           V  I     C    P+ RP+   + ++L+   ++ L
Sbjct: 234 VYQI--MNHCWRERPEDRPAFSRLLRQLAEIAESGL 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	785
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.03
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.02
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.01
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.98
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.98
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	98.83
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.7
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.58
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.42
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	98.4
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	98.39
3soc_A	322	Activin receptor type-2A; structural genomics cons	98.39
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	98.39
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.38
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	98.37
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.36
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	98.35
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	98.35
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	98.34
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.34
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	98.32
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	98.31
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.3
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.29
3q4u_A	301	Activin receptor type-1; structural genomics conso	98.29
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.28
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	98.26
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.25
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	98.25
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.24
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.23
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.23
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.22
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	98.22
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	98.2
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	98.2
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	98.19
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	98.19
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.19
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	98.18
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.18
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	98.18
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	98.18
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	98.17
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	98.17
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.17
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	98.17
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.16
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	98.16
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	98.16
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.16
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	98.15
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.15
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	98.15
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.15
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	98.15
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	98.14
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	98.14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	98.13
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	98.13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	98.13
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	98.13
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.12
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.12
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	98.12
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	98.11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	98.11
2a19_B	284	Interferon-induced, double-stranded RNA-activated	98.1
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	98.1
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	98.1
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.1
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	98.09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	98.09
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	98.08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	98.07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	98.06
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	98.05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	98.04
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	98.04
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.04
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	98.04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	98.02
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	98.02
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	98.02
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	98.02
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	98.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	97.99
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	97.96
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	97.95
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	97.94
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	97.94
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	97.92
3uqc_A	286	Probable conserved transmembrane protein; structur	97.92
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	97.91
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.91
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	97.9
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	97.9
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	97.9
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	97.89
3bhy_A	283	Death-associated protein kinase 3; death associate	97.88
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	97.87
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	97.87
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	97.86
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.86
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.86
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.85
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	97.84
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	97.83
3fme_A	290	Dual specificity mitogen-activated protein kinase;	97.83
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.82
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	97.82
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.8
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	97.8
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	97.79
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.79
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	97.79
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.79
3an0_A	340	Dual specificity mitogen-activated protein kinase;	97.79
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	97.78
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	97.78
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	97.77
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	97.77
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	97.77
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	97.76
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	97.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	97.75
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	97.74
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	97.73
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	97.73
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	97.73
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.72
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	97.72
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	97.72
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	97.72
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	97.71
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	97.71
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	97.71
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	97.71
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	97.71
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	97.7
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.7
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.69
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	97.69
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	97.69
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	97.69
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	97.68
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	97.68
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	97.68
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	97.66
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	97.66
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	97.66
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	97.66
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	97.65
3o0g_A	292	Cell division protein kinase 5; kinase activator c	97.65
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	97.64
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	97.64
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	97.64
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	97.63
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	97.63
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	97.63
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	97.62
3niz_A	311	Rhodanese family protein; structural genomics, str	97.62
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	97.62
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	97.62
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	97.61
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	97.6
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	97.6
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	97.6
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	97.6
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	97.59
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	97.59
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	97.57
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	97.57
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	97.57
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	97.57
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	97.56
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	97.56
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	97.55
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	97.55
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	97.54
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	97.53
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	97.53
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	97.51
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	97.51
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	97.51
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	97.5
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	97.49
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	97.48
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	97.48
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	97.47
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	97.44
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	97.44
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	97.43
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	97.43
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	97.42
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	97.35
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	97.35
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	97.35
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	97.34
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	97.34
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	97.32
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	97.32
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	97.31
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	97.3
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	97.3
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	97.29
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	97.28
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	97.28
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	97.28
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	97.25
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	97.24
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	97.24
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	97.24
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	97.23
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	97.22
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	97.21
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	97.18
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	97.17
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	97.16
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	97.13
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	97.12
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	97.12
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	97.11
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	97.1
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.07
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	97.06
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	97.06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	97.06
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	96.99
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	96.98
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	96.98
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	96.96
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	96.93
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	96.83
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	96.73
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	96.71
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.6
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	96.57
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	96.56
3rp9_A	458	Mitogen-activated protein kinase; structural genom	96.45
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	96.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.13
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	95.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.83
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.71
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.2
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.6

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-76  Score=694.13  Aligned_cols=655  Identities=34%  Similarity=0.514  Sum_probs=594.9

Q ss_pred             CCCcEEEccCCCCCCC---ccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCc--cCCCCCCc
Q 003931            5 SELQYLSVYDNNLNGA---IPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPS--FILTCRNL   79 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L   79 (785)
                      ..++.|+|+++.+.+.   ++.++.++++|+.++++.+.+..+ +..|..+++|++|+|++|.+++.+|.  .++.+++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC-CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC-chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            3688999999999887   788899999999999999877543 35799999999999999999988888  89999999


Q ss_pred             cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCcc---ccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931           80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN---VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE  156 (785)
Q Consensus        80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  156 (785)
                      ++|++++|.+.+.+|..++.++++|++|++++|.+++..+..   +.++++|++|++++|.+++..+  +..+++|++|+
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~  206 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD  206 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEE
Confidence            999999999988888777689999999999999999888877   8899999999999999987655  48899999999


Q ss_pred             cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc
Q 003931          157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      +++|.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..  .+++|++|++++|.+++
T Consensus       207 Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~  283 (768)
T 3rgz_A          207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG  283 (768)
T ss_dssp             CCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred             CcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence            999999988777 999999999999999999999999999999999999999999877765  88999999999999999


Q ss_pred             ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChh-ccCCCCCCEEECcCCcccccCCccC
Q 003931          237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGNQLSGTIPPTL  315 (785)
Q Consensus       237 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~l  315 (785)
                      .+|..+...+++|++|++++|.+.+.+|..++.+++|++|++++|.++|.+|.. +..+++|++|++++|.+++.+|..+
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  363 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL  363 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence            999885555699999999999999999999999999999999999999888876 8999999999999999999999999


Q ss_pred             cCCC-CCCEEEcccccccCCCCCCCCC--CCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCC
Q 003931          316 WNLT-NLLSLQLFSNNLSGTIPPEIGS--MASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSP  392 (785)
Q Consensus       316 ~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~  392 (785)
                      ..++ +|++|++++|++++.+|..+..  +++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+. 
T Consensus       364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-  442 (768)
T 3rgz_A          364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-  442 (768)
T ss_dssp             HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-
T ss_pred             HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-
Confidence            9887 9999999999999988888877  88999999999999999999999999999999999999999999998886 


Q ss_pred             CccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEcc
Q 003931          393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS  472 (785)
Q Consensus       393 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  472 (785)
                      +|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|.+++.+++|+.|+++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS  522 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccC----------------------ccccCCCc
Q 003931          473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSN----------------------ELTGKIPT  530 (785)
Q Consensus       473 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n----------------------~l~~~~~~  530 (785)
                      +|++.+.+|..++.+++|+.|++++|.++|.+|..+.....+..+++..+                      .+.+..+.
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            99999999999999999999999999999999998887776666555431                      23445566


Q ss_pred             ccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhh
Q 003931          531 DLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVL  610 (785)
Q Consensus       531 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l  610 (785)
                      .+..+..++.++++.|.+.|.+|..+..+++|++||+++|+++|.+|..++.++.|+.|++++|+++|.+|..++++..+
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence            67777888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheeecccccCCCCCCcccccCCCCceEeccCCceeeecCCcccccccceeeecCCCc
Q 003931          611 QYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE  668 (785)
Q Consensus       611 ~~~l~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~  668 (785)
                      +. ||+++|+++|.+|..++.+++|++|++++|+++|.+|.. ..+..+....+.+|+
T Consensus       683 ~~-LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          683 NI-LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             CE-EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             CE-EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence            87 999999999999999999999999999999999999975 234445555566664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.4e-74  Score=672.77  Aligned_cols=632  Identities=31%  Similarity=0.445  Sum_probs=582.8

Q ss_pred             CCCCEEeCCCCCCCCC---CccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCCh--hhhcCCCC
Q 003931           29 RKVRYLDLGGNFLETP---DWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPE--RLFTNLGK  103 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~---~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~f~~l~~  103 (785)
                      .+++.|+|+++.+...   .+.+|.+++.|+.++++.+.+.. .|..|..+++|++|+|++|.+++.+|.  . ++++++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~  127 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSG  127 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTT
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHH-HhCCCC
Confidence            5799999999988765   45688999999999999988753 567899999999999999999988876  4 489999


Q ss_pred             CcEEECCCCCCcccCCccc-cCCCCCcEEEcCCCcccccCCcC---CCCCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 003931          104 LEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGD---IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL  179 (785)
Q Consensus       104 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  179 (785)
                      |++|++++|.+.+..+..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+..|  +..+++|++|
T Consensus       128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L  205 (768)
T 3rgz_A          128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL  205 (768)
T ss_dssp             CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEE
T ss_pred             CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEE
Confidence            9999999999998877766 89999999999999999888776   8899999999999999987665  4889999999


Q ss_pred             EcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931          180 DLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF  259 (785)
Q Consensus       180 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  259 (785)
                      ++++|.+++.+|. ++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..   .+++|++|++++|.+
T Consensus       206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF  281 (768)
T ss_dssp             ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred             ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence            9999999988877 999999999999999999999999999999999999999999877763   789999999999999


Q ss_pred             cccCCccCcCC-CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCcc-CcCCCCCCEEEcccccccCCCCC
Q 003931          260 MGNIPPEIGLL-TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT-LWNLTNLLSLQLFSNNLSGTIPP  337 (785)
Q Consensus       260 ~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~  337 (785)
                      .+.+|..+... ++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|.
T Consensus       282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~  361 (768)
T 3rgz_A          282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE  361 (768)
T ss_dssp             EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred             CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence            99999988775 99999999999999999999999999999999999999888876 99999999999999999999999


Q ss_pred             CCCCCC-CCCEEEccCCcCccccCccccc--cCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccC
Q 003931          338 EIGSMA-SLVAFDVNTNQLHGELPENISR--LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCS  414 (785)
Q Consensus       338 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  414 (785)
                      .+..++ +|+.|++++|.+.+.+|..+..  +++|+++++++|.+++.+|..+..+. +|+.|++++|.+++.+|..+..
T Consensus       362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~  440 (768)
T 3rgz_A          362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGS  440 (768)
T ss_dssp             THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGG
T ss_pred             HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhc
Confidence            999887 9999999999999999888876  88999999999999999999998886 9999999999999999999999


Q ss_pred             CCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceec
Q 003931          415 GFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ  494 (785)
Q Consensus       415 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  494 (785)
                      +++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..++.+++|+.|++++|++.+.+|..++.+++|+.|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCC----------------------cccCcC
Q 003931          495 LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN----------------------HLTGEI  552 (785)
Q Consensus       495 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n----------------------~l~~~~  552 (785)
                      +++|++++.+|..+..+++|+.|++++|++++.+|..+.....+..+++..+                      .+.+..
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999888777766655442                      234455


Q ss_pred             CcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCcccccC
Q 003931          553 PKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL  632 (785)
Q Consensus       553 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~~l  632 (785)
                      +..+..++.+..++++.|.+.|.+|..++.+++|+.||+++|+++|.+|..++++..++. |++++|.++|.+|..++.+
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE-EECCSSCCCSCCCGGGGGC
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE-EeCcCCccCCCCChHHhCC
Confidence            666777888889999999999999999999999999999999999999999999999987 9999999999999999999


Q ss_pred             CCCceEeccCCceeeecCCcccccccceeeecCCCchh
Q 003931          633 TSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT  670 (785)
Q Consensus       633 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~  670 (785)
                      ++|++||+++|+++|.+|..+..+++|+.+|+++|++.
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            99999999999999999999999999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-61  Score=562.76  Aligned_cols=587  Identities=23%  Similarity=0.222  Sum_probs=408.5

Q ss_pred             CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      -+.++.++++++.++ ..+.  +++++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus         6 ~~~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            6 HEVADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             SSEEECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             CCeeECCCCCccccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            367888888888544 3343  6899999999999999888899999999999999999988888999999999999999


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI  166 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  166 (785)
                      |.++ .+|...|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..
T Consensus        83 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           83 NELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             CccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence            9998 678777789999999999999998887788999999999999999998888888889999999999999988776


Q ss_pred             Ccccc--CCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhcc---CCCCCCEEEccCCCCccccCcc
Q 003931          167 PSSLG--QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLS---NLSKLNDLGLSDNFLSGEISAN  241 (785)
Q Consensus       167 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~  241 (785)
                      +..+.  .+++|++|++++|.+++..+..++.+++|+.+++.++.+.......+.   ..++|+.|++++|.+.+..+..
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            66554  558899999999999888888888889999999888877643222221   3478888888888888655554


Q ss_pred             ccCCCCC--CCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccc-----cCCc-
Q 003931          242 LIGNWTE--LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG-----TIPP-  313 (785)
Q Consensus       242 ~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----~~p~-  313 (785)
                       +..++.  |++|++++|.+.+..|..++.+++|++|++++|.+++..|.+|..+++|+.|++++|...+     .+|. 
T Consensus       242 -~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          242 -FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             -TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             -hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence             666544  8888888888888878888888888888888888888888888888888888888775543     2222 


Q ss_pred             ---cCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc--CccccccCCCcEEEecCccccccCCcccc
Q 003931          314 ---TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL--PENISRLVKLNKFSVFTNNFSGSIPGDFG  388 (785)
Q Consensus       314 ---~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~  388 (785)
                         .+..+++|++|++++|.+++..+..+..+++|+++++++|.+....  +..+..+.                     
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~---------------------  379 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA---------------------  379 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT---------------------
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc---------------------
Confidence               5677788888888888888777777778888888888877653221  11121110                     


Q ss_pred             cCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCC-ccccCCCCCcEEEcccCccccccCcccCCCCCCc
Q 003931          389 KFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLP-ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLD  467 (785)
Q Consensus       389 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  467 (785)
                        .++++.+++++|++.+..|..+..+.+|+.|++++|.+.+.+| ..+.++++|++|++++|++.+..+..|..+++|+
T Consensus       380 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  457 (680)
T 1ziw_A          380 --HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ  457 (680)
T ss_dssp             --TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred             --cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence              0245555555555555555555555555555555555544333 4455555555555555555555555555555555


Q ss_pred             EEEccCCeee--eecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCC--------cccccCCC
Q 003931          468 FIRLSGNQFV--GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP--------TDLGKLVK  537 (785)
Q Consensus       468 ~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~  537 (785)
                      .|++++|.+.  +..|..|..+++|+.|++++|.+++..+..|.++++|+.|++++|++++..+        ..+..+++
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~  537 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH  537 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence            5555555554  3445555555555666665555555555555555556666666655553311        12455566


Q ss_pred             CCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccc-hhhhhhheeec
Q 003931          538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLG-NLFVLQYMLDL  616 (785)
Q Consensus       538 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~l~~~l~l  616 (785)
                      |+.|++++|+++...+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..|..++ .+..++. +++
T Consensus       538 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~-l~l  616 (680)
T 1ziw_A          538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE-LDM  616 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE-EEC
T ss_pred             CCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE-EEc
Confidence            66666666666533333456666666666666666655555555666666666666666655554444 4455544 566


Q ss_pred             ccccCC
Q 003931          617 SSNSLS  622 (785)
Q Consensus       617 s~n~l~  622 (785)
                      ++|.+.
T Consensus       617 ~~N~~~  622 (680)
T 1ziw_A          617 RFNPFD  622 (680)
T ss_dssp             TTCCCC
T ss_pred             cCCCcc
Confidence            666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-60  Score=555.54  Aligned_cols=590  Identities=21%  Similarity=0.198  Sum_probs=500.2

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      +.++++++.++.++.. +.  +++++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++|++++
T Consensus         7 ~~~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDD-LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             SEEECCSSCCSSCCSC-SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCS
T ss_pred             CeeECCCCCccccccc-cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCC
Confidence            5789999999887743 33  789999999999999888899999999999999999985 4445669999999999999


Q ss_pred             CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCC
Q 003931          112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP  191 (785)
Q Consensus       112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  191 (785)
                      |.+++..+..|.++++|++|++++|++++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+
T Consensus        83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            99997777789999999999999999998877889999999999999999998888889999999999999999987776


Q ss_pred             cccc--CCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcccc--CCCCCCCEEEeecCcCcccCCccC
Q 003931          192 PELG--LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI--GNWTELESLQIQNNSFMGNIPPEI  267 (785)
Q Consensus       192 ~~~~--~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~  267 (785)
                      ..+.  .+++|++|++++|.+++..|..+..+++|+.|+++++.+.+.......  -..++|+.|++++|.+.+..|.++
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred             HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence            6554  568999999999999988899999999999999999887643222111  134789999999999998888888


Q ss_pred             cCCCC--CcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCC-----CC----
Q 003931          268 GLLTK--LQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT-----IP----  336 (785)
Q Consensus       268 ~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p----  336 (785)
                      ..++.  |++|++++|.+++..|.+|+.+++|+.|++++|.+++..|..+.++++|++|++++|...+.     +|    
T Consensus       243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~  322 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD  322 (680)
T ss_dssp             GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred             hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence            88765  99999999999888888899999999999999999988888899999999999988765432     22    


Q ss_pred             CCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCcccc--C
Q 003931          337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC--S  414 (785)
Q Consensus       337 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~  414 (785)
                      ..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+...                       ......+.  .
T Consensus       323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-----------------------~l~~~~f~~~~  379 (680)
T 1ziw_A          323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-----------------------TLTNETFVSLA  379 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC-----------------------EECTTTTGGGT
T ss_pred             hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh-----------------------hcchhhhcccc
Confidence            2556677777777777777766666666666666666665543211                       11111122  2


Q ss_pred             CCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEccCCeeeeecccchhccccccee
Q 003931          415 GFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNL  493 (785)
Q Consensus       415 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  493 (785)
                      ...|+.+++++|.+++..|..+..+++|++|++++|.+.+.++ ..|..+++|+.|++++|++.+..+..|..+++|+.|
T Consensus       380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  459 (680)
T 1ziw_A          380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL  459 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred             cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence            3579999999999999999999999999999999999987665 789999999999999999999999999999999999


Q ss_pred             ccccceee--eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCC--------cccccCCCCC
Q 003931          494 QLDRNRIS--GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIP--------KSISNLTELA  563 (785)
Q Consensus       494 ~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p--------~~~~~l~~L~  563 (785)
                      ++++|.+.  +..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+        ..+..+++|+
T Consensus       460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~  539 (680)
T 1ziw_A          460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH  539 (680)
T ss_dssp             ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred             hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence            99999987  5678899999999999999999998888889999999999999999986422        2378899999


Q ss_pred             eEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCcccc-cCCCCceEeccC
Q 003931          564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELG-KLTSLEILNLSR  642 (785)
Q Consensus       564 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~-~l~~L~~L~l~~  642 (785)
                      +|++++|+++...+..|..+++|+.|++++|++++..+..|.++..++. +++++|.+++..+..++ .+++|+++++++
T Consensus       540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS-LNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE-EECCCCcCCccChhHhcccccccCEEEccC
Confidence            9999999999766678999999999999999999877777889999987 99999999998888887 789999999999


Q ss_pred             Cceeeec
Q 003931          643 NQLSGRI  649 (785)
Q Consensus       643 n~l~~~~  649 (785)
                      |.+....
T Consensus       619 N~~~c~c  625 (680)
T 1ziw_A          619 NPFDCTC  625 (680)
T ss_dssp             CCCCBCC
T ss_pred             CCcccCC
Confidence            9987643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.1e-55  Score=503.11  Aligned_cols=535  Identities=19%  Similarity=0.180  Sum_probs=402.0

Q ss_pred             CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      -+.++.++..++.+ |..+.  +++++|++++|.++.+.+.+|.++++|++|++++|.+.++.|..|.++++|++|++++
T Consensus        14 ~~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccC-cCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            35677777777744 43343  3789999999999998888999999999999999999988899999999999999999


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI  166 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  166 (785)
                      |.+++..|. .|.++++|++|++++|.+++..+..+.++++|++|++++|.+++.....+..+++|++|++++|.+.+..
T Consensus        91 n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           91 NPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             CCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             CcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence            999854444 4689999999999999999877888999999999999999998755445556899999999999998888


Q ss_pred             CccccCCCCCC--EEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc----ccCc
Q 003931          167 PSSLGQLKNLQ--HLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG----EISA  240 (785)
Q Consensus       167 ~~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~  240 (785)
                      |..++.+++|+  +|++++|.+.+..|..+.. ..|+.+++++|.   ..+..+..+.+++...+....+.+    .++.
T Consensus       170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~  245 (606)
T 3t6q_A          170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP  245 (606)
T ss_dssp             HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred             hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccCh
Confidence            88888999998  8899999998777766554 688999998886   334455555555444443332221    2223


Q ss_pred             cccCCCC--CCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931          241 NLIGNWT--ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL  318 (785)
Q Consensus       241 ~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  318 (785)
                      ..+..+.  +|+.|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            3333332  5677777777777666666777777777777777776 566667777777777777777776666677777


Q ss_pred             CCCCEEEcccccccCCCCCC-CCCCCCCCEEEccCCcCcccc--CccccccCCCcEEEecCccccccCCcccccCCCCcc
Q 003931          319 TNLLSLQLFSNNLSGTIPPE-IGSMASLVAFDVNTNQLHGEL--PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLI  395 (785)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~  395 (785)
                      ++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..  +..+..++                         +|+
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-------------------------~L~  379 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-------------------------HLQ  379 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-------------------------TCC
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC-------------------------CCC
Confidence            77777777777776555443 666777777777777666543  44444444                         455


Q ss_pred             EEEcccccceecCCccccCCCCCcEEEccCCCCcccCCc-cccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCC
Q 003931          396 NVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN  474 (785)
Q Consensus       396 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n  474 (785)
                      .|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..++.+++|+.|++++|
T Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  459 (606)
T 3t6q_A          380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN  459 (606)
T ss_dssp             EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence            555555555555555566666667777777766655443 3677777888888888877777777777888888888888


Q ss_pred             eeeee---cccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCc
Q 003931          475 QFVGE---ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE  551 (785)
Q Consensus       475 ~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  551 (785)
                      ++.+.   .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.| +|++++|++++.
T Consensus       460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence            87652   23567888888999999998888888888889999999999999988888888889999 999999999988


Q ss_pred             CCcccccCCCCCeEecCCCcCccCC
Q 003931          552 IPKSISNLTELAYLDLSNNKLTGDV  576 (785)
Q Consensus       552 ~p~~~~~l~~L~~L~Ls~n~l~~~~  576 (785)
                      .|..+..+++|+++++++|.+....
T Consensus       539 ~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CHhhcccCCCCCEEeCCCCCccccC
Confidence            8888888899999999999887543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.6e-55  Score=502.48  Aligned_cols=540  Identities=19%  Similarity=0.186  Sum_probs=371.1

Q ss_pred             CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      -+.++.++..++.++.. +.  +.+++|++++|.++++.|..|.++++|++|++++|.+.+ ++...|.++++|++|+++
T Consensus        14 ~~~~~c~~~~l~~iP~~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGT-LP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTT-SC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCcccCcCC-CC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCC
Confidence            34677777777766532 32  367788888888777777777777788888888777774 333445777777777777


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI  190 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  190 (785)
                      +|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus        90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence            77777777777777777777777777777665666777777777777777777644344445777777777777777666


Q ss_pred             CccccCCcccC--eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCc
Q 003931          191 PPELGLCTNLS--YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG  268 (785)
Q Consensus       191 ~~~~~~l~~L~--~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  268 (785)
                      +..++.+++|+  .|++++|.+++..|..+.. .+|+.|++++|...   +.. +..+.++....+....+.+       
T Consensus       170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~~-~~~l~~~~l~~l~~~~~~~-------  237 (606)
T 3t6q_A          170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LVI-FKGLKNSTIQSLWLGTFED-------  237 (606)
T ss_dssp             HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HHH-HHHTTTCEEEEEECCCCTT-------
T ss_pred             hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---HHH-hhhccccchhheechhhcc-------
Confidence            66666667666  6667777776655554433 45666666666521   111 3333333333332222111       


Q ss_pred             CCCCCcEEECcCccccccCChhccCCC--CCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931          269 LLTKLQYLFLYRNNFSGPIPSEIEKLT--SLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV  346 (785)
Q Consensus       269 ~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  346 (785)
                          +....+        .+..|..+.  +|+.|++++|.+++..+..|+.+++|++|++++|.++ .+|..+..+++|+
T Consensus       238 ----~~~~~i--------~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~  304 (606)
T 3t6q_A          238 ----MDDEDI--------SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK  304 (606)
T ss_dssp             ----SCCCCC--------CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred             ----cccccc--------ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence                111111        111222221  4566666666666555555666666666666666665 5555666666666


Q ss_pred             EEEccCCcCccccCccccccCCCcEEEecCccccccCCcc-cccCCCCccEEEcccccceecC--CccccCCCCCcEEEc
Q 003931          347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGEL--PHELCSGFALEELTV  423 (785)
Q Consensus       347 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l  423 (785)
                      +|++++|.+.+..|..+..+++|+.+++++|.+.+.+|.. +..+ ++|+.|++++|.+.+..  +..+..+++|++|++
T Consensus       305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  383 (606)
T 3t6q_A          305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL  383 (606)
T ss_dssp             EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred             EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence            6666666666655666666666666666666666555544 3333 37777777777776654  666777888888888


Q ss_pred             cCCCCcccCCccccCCCCCcEEEcccCccccccCc-ccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeee
Q 003931          424 NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITK-AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISG  502 (785)
Q Consensus       424 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  502 (785)
                      ++|.+.+..|..+..+++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            88888888888888888888888888888776554 47788888888888888887777788888888888888888875


Q ss_pred             c---cCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCcc
Q 003931          503 G---IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE  579 (785)
Q Consensus       503 ~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  579 (785)
                      .   .+..+..+++|+.|++++|.+++..|..|+.+++|++|++++|++++..|..+..++.| +|++++|++++..|..
T Consensus       464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~  542 (606)
T 3t6q_A          464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL  542 (606)
T ss_dssp             GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred             cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence            2   23567888888888888888887778888888888888888888888888888888888 8888888888777777


Q ss_pred             ccccCCCcEEeCCCCcCcccCC
Q 003931          580 LGRFDKLLSLNLSHNDLSGEIP  601 (785)
Q Consensus       580 l~~l~~L~~L~ls~N~l~~~~p  601 (785)
                      +..+++|+.+++++|++.+..+
T Consensus       543 ~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          543 LPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             HHHHHTSSEEECTTCCEECSGG
T ss_pred             cccCCCCCEEeCCCCCccccCC
Confidence            8888888888888888875543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.4e-54  Score=492.13  Aligned_cols=530  Identities=21%  Similarity=0.218  Sum_probs=342.7

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      ++++.+++.++.++.+..   +++++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++|+|++
T Consensus        14 ~~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred             CceEccCCCcccCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCC
Confidence            345555555555543211   455555555555555555555555555555555555552 3333345555566666665


Q ss_pred             CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc-cCCccccCCCCCCEEEcccCcCcccC
Q 003931          112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTI  190 (785)
Q Consensus       112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~  190 (785)
                      |.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            55555555555556666666666666555544555566666666666665554 34555666666666666666666555


Q ss_pred             CccccCCcccC----eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCccc----
Q 003931          191 PPELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN----  262 (785)
Q Consensus       191 ~~~~~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----  262 (785)
                      +..++.+++|+    ++++++|.+++..+..+... +|++|++++|.+.+...+..+++++.|+.+++..+.+.+.    
T Consensus       170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            55555554443    46666666654444443333 5666666666555433333355566666655544333211    


Q ss_pred             --CCccCcCCC--CCcEEEC-cCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCC
Q 003931          263 --IPPEIGLLT--KLQYLFL-YRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPP  337 (785)
Q Consensus       263 --~~~~~~~l~--~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  337 (785)
                        .+..+..+.  .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| 
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-  323 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-  323 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-
T ss_pred             ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-
Confidence              011111111  2444444 44455555554 555666666666666654 333 555566666666666665 3444 


Q ss_pred             CCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceec--CCccccCC
Q 003931          338 EIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPHELCSG  415 (785)
Q Consensus       338 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~  415 (785)
                      .+ .+++|+.+++++|...+..  .+..++                         +|+.|++++|.+++.  .+..+..+
T Consensus       324 ~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-------------------------~L~~L~ls~n~l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          324 TL-DLPFLKSLTLTMNKGSISF--KKVALP-------------------------SLSYLDLSRNALSFSGCCSYSDLGT  375 (606)
T ss_dssp             CC-CCSSCCEEEEESCSSCEEC--CCCCCT-------------------------TCCEEECCSSCEEEEEECCHHHHCC
T ss_pred             cC-CCCccceeeccCCcCccch--hhccCC-------------------------CCCEEECcCCccCCCcchhhhhccC
Confidence            23 5555555555555333222  122222                         566666666666544  35667777


Q ss_pred             CCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEccCCeeeeecccchhcccccceec
Q 003931          416 FALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ  494 (785)
Q Consensus       416 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  494 (785)
                      ++|++|++++|.+.+ +|..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus       376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            778888888888775 44778888888999999988888777 6788889999999999999888888899999999999


Q ss_pred             cccceeee-ccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931          495 LDRNRISG-GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT  573 (785)
Q Consensus       495 L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  573 (785)
                      +++|.+++ ..|..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            99999987 47888999999999999999999888888999999999999999999888999999999999999999998


Q ss_pred             cCCCccccccC-CCcEEeCCCCcCcccCC
Q 003931          574 GDVPQELGRFD-KLLSLNLSHNDLSGEIP  601 (785)
Q Consensus       574 ~~~p~~l~~l~-~L~~L~ls~N~l~~~~p  601 (785)
                       .+|..+..++ +|+.+++++|++.+..+
T Consensus       535 -~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          535 -TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             -CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             -ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence             5666688886 59999999999986554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.5e-53  Score=487.19  Aligned_cols=530  Identities=18%  Similarity=0.188  Sum_probs=406.3

Q ss_pred             CcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcC
Q 003931           55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLA  134 (785)
Q Consensus        55 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  134 (785)
                      -++++.+++.++.++ ..+.  +++++|++++|.+++ ++...|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip-~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLSKVP-DDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCSSCC-TTSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcccCC-CCCC--CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            356788888777443 3333  678888888888874 555556888888888888888887777888888888888888


Q ss_pred             CCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc-cCCccccCCcccCeeeccccccccC
Q 003931          135 TNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLALAVNQLSGG  213 (785)
Q Consensus       135 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~  213 (785)
                      +|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++.
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            888887778888888888888888888887776778888888888888888875 4577888888888888888888877


Q ss_pred             CchhccCCCCCC----EEEccCCCCccccCccccCCCCCCCEEEeecCcCc-ccCCccCcCCCCCcEEECcCcccccc--
Q 003931          214 LPLSLSNLSKLN----DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM-GNIPPEIGLLTKLQYLFLYRNNFSGP--  286 (785)
Q Consensus       214 ~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--  286 (785)
                      .+..++.+++|+    +|++++|.++ .+++..+... +|++|++++|.+. +..|..++.++.|+.+++..+.+.+.  
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            777666655544    7888888887 4555434444 7888888888775 34566677777777777765543321  


Q ss_pred             ----CChhccCCC--CCCEEEC-cCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931          287 ----IPSEIEKLT--SLENLDL-SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       287 ----~p~~~~~l~--~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  359 (785)
                          .+..+..+.  .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|+.+++++|.+ +.+
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~l  322 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQF  322 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccc
Confidence                111111111  2344444 44555555554 556666666666666654 233 455555555555555555 333


Q ss_pred             CccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCccc--CCcccc
Q 003931          360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGS--LPACLR  437 (785)
Q Consensus       360 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~  437 (785)
                      | .+ .++                         +|+.+++++|+..+..  .+..+++|++|++++|.+++.  .+..+.
T Consensus       323 p-~~-~l~-------------------------~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  373 (606)
T 3vq2_A          323 P-TL-DLP-------------------------FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL  373 (606)
T ss_dssp             C-CC-CCS-------------------------SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred             c-cC-CCC-------------------------ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence            3 12 333                         5666666666444333  456788999999999999876  488899


Q ss_pred             CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecc-cchhcccccceeccccceeeeccCcchhccccCCe
Q 003931          438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEIS-PDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGV  516 (785)
Q Consensus       438 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  516 (785)
                      .+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus       374 ~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             CCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence            999999999999999874 4889999999999999999998877 68999999999999999999999999999999999


Q ss_pred             eecccCcccc-CCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCc
Q 003931          517 LSLDSNELTG-KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND  595 (785)
Q Consensus       517 L~Ls~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  595 (785)
                      |++++|.+++ .+|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            9999999997 478899999999999999999999889999999999999999999999889999999999999999999


Q ss_pred             CcccCCcccchhh-hhhheeecccccCCCCCC
Q 003931          596 LSGEIPSNLGNLF-VLQYMLDLSSNSLSGTIP  626 (785)
Q Consensus       596 l~~~~p~~~~~l~-~l~~~l~ls~n~l~~~~~  626 (785)
                      ++ .+|..+..+. .+++ +++++|.+....+
T Consensus       533 l~-~~p~~~~~l~~~L~~-l~l~~N~~~c~c~  562 (606)
T 3vq2_A          533 IE-TSKGILQHFPKSLAF-FNLTNNSVACICE  562 (606)
T ss_dssp             CC-CEESCGGGSCTTCCE-EECCSCCCCCSST
T ss_pred             Cc-ccCHhHhhhcccCcE-EEccCCCcccCCc
Confidence            98 6777788886 4776 9999999975444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-52  Score=491.24  Aligned_cols=534  Identities=22%  Similarity=0.212  Sum_probs=290.2

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCc-ccCCccCCCCCCccEEECCCC
Q 003931            9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      ..+.++++++.++.    -.+++++|+|++|.|+.+.+.+|.++++|++|++++|... .+.|..|.++++|++|+|++|
T Consensus         8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            44555555554332    2345666666666666555555666666666666655322 233555555555555555555


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCcccCCcc--ccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccc
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTG  164 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~  164 (785)
                      .+++..|. .|.++++|++|+|++|.+++..+..  |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus        84 ~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            55533232 3355555555555555555433332  5555555555555555554433 345555555555555555555


Q ss_pred             cCCccccCC--CCCCEEEcccCcCcccCCccccCCcc------cCeeeccccccccCCchhccCC---CCCCEEEccCCC
Q 003931          165 QIPSSLGQL--KNLQHLDLRMNALNYTIPPELGLCTN------LSYLALAVNQLSGGLPLSLSNL---SKLNDLGLSDNF  233 (785)
Q Consensus       165 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~L~~n~  233 (785)
                      ..+..+..+  ++|+.|+++.|.+.+..+..++.+++      |+.|++++|.+++..+..+...   .+++.+.++.+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            555555444  45555555555555544444444433      4555555554444443333221   334444443222


Q ss_pred             CccccCccccCCCCCCCEEEeecCcCcccCCccCcCC--CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccC
Q 003931          234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL--TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTI  311 (785)
Q Consensus       234 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  311 (785)
                      .....                ..+.+.+..+..|..+  ++|+.|++++|.+.+..|..|..+++|+.|++++|++++..
T Consensus       243 ~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  306 (844)
T 3j0a_A          243 MGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA  306 (844)
T ss_dssp             CBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred             ccccc----------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence            11000                0111222222223332  45666666666666666666666666666666666666666


Q ss_pred             CccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCC
Q 003931          312 PPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS  391 (785)
Q Consensus       312 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~  391 (785)
                      |..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++...      .
T Consensus       307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~  380 (844)
T 3j0a_A          307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------I  380 (844)
T ss_dssp             TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS------C
T ss_pred             hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC------C
Confidence            6666666666666666666665556666666666666666666665555555666666666666665543111      2


Q ss_pred             CCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEc
Q 003931          392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL  471 (785)
Q Consensus       392 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  471 (785)
                      ++++.+++++|++. .+|..   ...++.+++++|.+.+....                       ..+..+++|+.|++
T Consensus       381 ~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~-----------------------~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          381 PSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDIL-----------------------YFLLRVPHLQILIL  433 (844)
T ss_dssp             CSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTH-----------------------HHHTTCTTCCEEEE
T ss_pred             CCcchhccCCCCcc-ccccc---ccccceeecccCccccCchh-----------------------hhhhcCCccceeeC
Confidence            25555555555554 22221   23455555555555433211                       11233444555555


Q ss_pred             cCCeeeeeccc-chhcccccceeccccceee-----eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccC
Q 003931          472 SGNQFVGEISP-DWGECRNLSNLQLDRNRIS-----GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN  545 (785)
Q Consensus       472 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~  545 (785)
                      ++|++.+..+. .+..+++|+.|++++|.++     +..+..|.++++|+.|+|++|.+++..|..|..+++|+.|++++
T Consensus       434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  513 (844)
T 3j0a_A          434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS  513 (844)
T ss_dssp             ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred             CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence            55544433222 2334555566666666554     23345566777777777777777777777777777777777777


Q ss_pred             CcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCC
Q 003931          546 NHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP  601 (785)
Q Consensus       546 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  601 (785)
                      |++++..+..+.  ++|++|++++|++++..|..+   .+|+.+++++|++....+
T Consensus       514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             CCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            777765555554  677777777777777776654   367777888877765443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-51  Score=486.33  Aligned_cols=511  Identities=23%  Similarity=0.233  Sum_probs=345.2

Q ss_pred             CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCC-CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN-FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      .+++++|+|++|.|++..+..|.++++|++|++++| .+..+.+.+|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            468999999999999999999999999999999999 4566778899999999999999999999999999999999999


Q ss_pred             ECCCCCCcccCChh-hhcCCCCCcEEECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCCcCCCCC--CCCCEEEcc
Q 003931           83 DLSLNKLSGLIPER-LFTNLGKLEYLNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIPGDIGSM--SNLQLVELF  158 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~-~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~L~  158 (785)
                      ++++|.+++.+|.. .|.++++|++|+|++|.+++..+ ..|.++++|++|++++|.+++..+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999998755543 56999999999999999997755 579999999999999999998888888877  899999999


Q ss_pred             cCcccccCCccccCCCC------CCEEEcccCcCcccCCccccCC---cccCeeecccccc---------ccCCchhccC
Q 003931          159 NNSFTGQIPSSLGQLKN------LQHLDLRMNALNYTIPPELGLC---TNLSYLALAVNQL---------SGGLPLSLSN  220 (785)
Q Consensus       159 ~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~i---------~~~~~~~l~~  220 (785)
                      +|.+.+..|..++.+++      |++|++++|.+++..+..+...   +.++.+.++.+..         .+..+..|..
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            99999888887777666      9999999999988887776543   5677787764332         2222233333


Q ss_pred             C--CCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCC
Q 003931          221 L--SKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE  298 (785)
Q Consensus       221 l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  298 (785)
                      +  ++|+.|++++|.+.+..+ ..++.+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|..|..+++|+
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             cccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence            2  455556665555553322 2255555555555555555555555555555555555555555555555555555555


Q ss_pred             EEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCcc
Q 003931          299 NLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN  378 (785)
Q Consensus       299 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~  378 (785)
                      .|++++|.+.+..+..|..+++|++|++++|.+++.     ..+++|+.+++++|+                        
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~------------------------  392 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK------------------------  392 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC------------------------
T ss_pred             EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC------------------------
Confidence            555555555554444555555555555555555421     124444555555444                        


Q ss_pred             ccccCCcccccCCCCccEEEcccccceecCC-ccccCCCCCcEEEccCCCCcccCCc-cccCCCCCcEEEcccCcccccc
Q 003931          379 FSGSIPGDFGKFSPSLINVSFSNNSFSGELP-HELCSGFALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNI  456 (785)
Q Consensus       379 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~  456 (785)
                      ++ .+|..    ...++.+++++|.+.+... ..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+....
T Consensus       393 l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  467 (844)
T 3j0a_A          393 LV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW  467 (844)
T ss_dssp             CC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred             cc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence            44 22221    2367777777777765422 2344677888888888888765433 3455677777777777765322


Q ss_pred             CcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCC
Q 003931          457 TKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV  536 (785)
Q Consensus       457 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  536 (785)
                      +.                   +..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.  +
T Consensus       468 ~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~  526 (844)
T 3j0a_A          468 ET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A  526 (844)
T ss_dssp             CS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred             cc-------------------ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence            11                   12223344455555555555555555555555555555555555555544444443  4


Q ss_pred             CCCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931          537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT  573 (785)
Q Consensus       537 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  573 (785)
                      +|+.|++++|++++..|..+   .+|+.+++++|.+.
T Consensus       527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI  560 (844)
T ss_dssp             CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred             cccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence            55555555555555555443   24555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-48  Score=444.33  Aligned_cols=511  Identities=20%  Similarity=0.196  Sum_probs=331.0

Q ss_pred             CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      .+.++-++.+++.++. .+  .+++++|++++|.++.+.+.+|.++++|++|++++|.++++.+..|.++++|++|++++
T Consensus         9 ~~~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            3456666666664433 23  24678888888888777777788888888888888887777777777888888888888


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccc-cCCcCCCCCCCCCEEEcccCccccc
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSG-PIPGDIGSMSNLQLVELFNNSFTGQ  165 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~  165 (785)
                      |.++ .++...|.++++|++|++++|.+++..+..+.++++|++|++++|.+++ .+|..|+++++|++|++++|.+.+.
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           86 NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             CcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            8777 3555556778888888888887776665567777777777777777775 3567777777777777777777766


Q ss_pred             CCccccCCCCC----CEEEcccCcCcccCCccccCCcccCeeecccccccc-CCchhccCCCCCCEEEccCCCCcc----
Q 003931          166 IPSSLGQLKNL----QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG-GLPLSLSNLSKLNDLGLSDNFLSG----  236 (785)
Q Consensus       166 ~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~----  236 (785)
                      .+..++.+++|    ++|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++.+.+....+..    
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            66666666666    677777777776666666554 67777777664332 234455566666555544322210    


Q ss_pred             -ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCc-cccccCChhccCCCCCCEEECcCCcccccCCcc
Q 003931          237 -EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN-NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT  314 (785)
Q Consensus       237 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  314 (785)
                       .++...+..+++                     + .++.++++++ .+.+..|..+..+++|+.|++++|.++ .+|..
T Consensus       244 ~~~~~~~~~~l~~---------------------l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~  300 (570)
T 2z63_A          244 EKFDKSALEGLCN---------------------L-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF  300 (570)
T ss_dssp             EECCTTTTGGGGG---------------------S-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC
T ss_pred             hhcchhhhccccc---------------------c-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh
Confidence             111111111111                     1 1344444444 444445555555555555555555554 34444


Q ss_pred             CcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCc
Q 003931          315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL  394 (785)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L  394 (785)
                      +..+ +|++|++++|.+. .+|.  ..+++|+.+++++|.+.+..+.  ..++                         +|
T Consensus       301 ~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~-------------------------~L  349 (570)
T 2z63_A          301 SYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLP-------------------------SL  349 (570)
T ss_dssp             CSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCT-------------------------TC
T ss_pred             hccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCC-------------------------CC
Confidence            4444 5555555555554 2332  2444444444444444333222  2222                         34


Q ss_pred             cEEEcccccceecC--CccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEc
Q 003931          395 INVSFSNNSFSGEL--PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRL  471 (785)
Q Consensus       395 ~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L  471 (785)
                      +.|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            44444444433322  34455556666666666666654443 6677777777777777776654 46677788888888


Q ss_pred             cCCeeeeecccchhcccccceeccccceee-eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccC
Q 003931          472 SGNQFVGEISPDWGECRNLSNLQLDRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG  550 (785)
Q Consensus       472 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  550 (785)
                      ++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            888887777777888888888888888886 5677788888888888888888887778888888888888888888887


Q ss_pred             cCCcccccCCCCCeEecCCCcCccCCC
Q 003931          551 EIPKSISNLTELAYLDLSNNKLTGDVP  577 (785)
Q Consensus       551 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p  577 (785)
                      ..|..+..+++|++|++++|.+++..|
T Consensus       509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCHHHhhcccCCcEEEecCCcccCCCc
Confidence            777778888888888888888887655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-48  Score=444.84  Aligned_cols=510  Identities=19%  Similarity=0.199  Sum_probs=366.2

Q ss_pred             cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931           56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT  135 (785)
Q Consensus        56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  135 (785)
                      ++++.++..++.+ |..+.  +++++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        10 ~~~~c~~~~l~~i-p~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A           10 ITYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TEEECCSSCCSSC-CSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEeCCCCcccc-CCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            4566666666533 33332  46888888888887 45555568888888888888888877777888888888888888


Q ss_pred             CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc-cCCccccCCcccCeeeccccccccCC
Q 003931          136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLALAVNQLSGGL  214 (785)
Q Consensus       136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~  214 (785)
                      |++++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            88887777788888888888888888876655568888888888888888775 35777888888888888888887776


Q ss_pred             chhccCCCCC----CEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc-cCCccCcCCCCCcEEECcCccccc----
Q 003931          215 PLSLSNLSKL----NDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-NIPPEIGLLTKLQYLFLYRNNFSG----  285 (785)
Q Consensus       215 ~~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~----  285 (785)
                      +..++.+++|    +.+++++|.+.+..+ ..+... +|+.|++++|.... .++..+..++.++...+....+..    
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             HHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            7777777776    778888887774433 335444 67777777764321 233445556666655554332211    


Q ss_pred             --cCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccc-cccCCCCCCCCCCCCCCEEEccCCcCccccCcc
Q 003931          286 --PIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN-NLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN  362 (785)
Q Consensus       286 --~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  362 (785)
                        .....+..++++                      .++.+++.++ .+.+..|..+..+++|+.+++++|.+. .+|..
T Consensus       244 ~~~~~~~~~~l~~l----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~  300 (570)
T 2z63_A          244 EKFDKSALEGLCNL----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF  300 (570)
T ss_dssp             EECCTTTTGGGGGS----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC
T ss_pred             hhcchhhhcccccc----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh
Confidence              111111111111                      1334444444 444444455555555555555555544 34444


Q ss_pred             ccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccC--CccccCCC
Q 003931          363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSL--PACLRNCS  440 (785)
Q Consensus       363 ~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~  440 (785)
                      +..+ +|+.+++++|.+. .+|.  ..+ ++++.+++++|.+.+..+.  ..+++|++|++++|.+++..  +..+.+++
T Consensus       301 ~~~~-~L~~L~l~~n~~~-~l~~--~~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  373 (570)
T 2z63_A          301 SYNF-GWQHLELVNCKFG-QFPT--LKL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT  373 (570)
T ss_dssp             CSCC-CCSEEEEESCBCS-SCCB--CBC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred             hccC-CccEEeeccCccc-ccCc--ccc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC
Confidence            4444 5555555555554 3333  122 3677777777776655544  56778999999999988654  67788899


Q ss_pred             CCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecc-cchhcccccceeccccceeeeccCcchhccccCCeeec
Q 003931          441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEIS-PDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL  519 (785)
Q Consensus       441 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  519 (785)
                      +|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|+.|++
T Consensus       374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            999999999998876665 8889999999999999887765 46888899999999999999888888899999999999


Q ss_pred             ccCccc-cCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcc
Q 003931          520 DSNELT-GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG  598 (785)
Q Consensus       520 s~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  598 (785)
                      ++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            999987 5678888999999999999999988888888999999999999999998888888889999999999999987


Q ss_pred             cCCc
Q 003931          599 EIPS  602 (785)
Q Consensus       599 ~~p~  602 (785)
                      .+|.
T Consensus       533 ~~~~  536 (570)
T 2z63_A          533 SCPR  536 (570)
T ss_dssp             CTTT
T ss_pred             CCcc
Confidence            7764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-46  Score=426.81  Aligned_cols=489  Identities=18%  Similarity=0.179  Sum_probs=298.7

Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE  156 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  156 (785)
                      +...+.+.+++.++ .+|..++   ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|+++++|++|+
T Consensus         5 ~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            5 DASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             CTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            34445677888887 6787653   6788888888888887778888888888888888888877777888888888888


Q ss_pred             cccCcccccCCccccCCCCCCEEEcccCcCcc-cCCccccCCcccCeeeccccccccCC-chhccCCCCCCEEEccCCCC
Q 003931          157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLALAVNQLSGGL-PLSLSNLSKLNDLGLSDNFL  234 (785)
Q Consensus       157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l  234 (785)
                      +++|.+.+..|..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+ +..+.++++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            88888887766678888888888888888775 24556777777777777777633333 34566666677777777766


Q ss_pred             ccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccC--C-hhccCCCCCCEEECcCCcccccC
Q 003931          235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPI--P-SEIEKLTSLENLDLSGNQLSGTI  311 (785)
Q Consensus       235 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~L~~L~Ls~n~l~~~~  311 (785)
                      ++.+|.. ++.+++|++|++++|.+....+..+..+++|++|++++|.+++..  | .....+++|+.|++++|.+++..
T Consensus       161 ~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          161 RNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             cccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            6555544 666666666666666654322222344666666666666665431  1 11234556666666666665433


Q ss_pred             C----ccCcCCCCCCEEEcccccccCCCC------CCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccc
Q 003931          312 P----PTLWNLTNLLSLQLFSNNLSGTIP------PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG  381 (785)
Q Consensus       312 p----~~l~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~  381 (785)
                      +    ..+..+++|+.+++++|.+.+...      ..+..+++++.+++.++.+.....  +                 .
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~-----------------~  300 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--F-----------------Y  300 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--S-----------------C
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--c-----------------c
Confidence            2    223445566666666666554211      112333444444444433221000  0                 0


Q ss_pred             cCCcccccCCCCccEEEcccccceecCCccc-cCCCCCcEEEccCCCCcccCC---ccccCCCCCcEEEcccCccccccC
Q 003931          382 SIPGDFGKFSPSLINVSFSNNSFSGELPHEL-CSGFALEELTVNGNNFTGSLP---ACLRNCSNLNRVRFDGNQFTGNIT  457 (785)
Q Consensus       382 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~  457 (785)
                      .++.. ....++++.+++++|.+. .+|..+ ..+++|++|++++|.+.+..|   ..++.+++|++|++++|++++..+
T Consensus       301 ~l~~~-~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  378 (549)
T 2z81_A          301 DLSTV-YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK  378 (549)
T ss_dssp             CCCHH-HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred             cchhh-hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence            00000 111125566666666554 344443 345666666666666665442   235566666666666666655432


Q ss_pred             --cccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccC
Q 003931          458 --KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKL  535 (785)
Q Consensus       458 --~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  535 (785)
                        ..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++ +|..+  .++|+.|++++|++++.+    ..+
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l  450 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFL  450 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCC
T ss_pred             chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccC
Confidence              34566666666666666666 345556666667777777766653 22222  246677777777766432    356


Q ss_pred             CCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCC
Q 003931          536 VKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP  601 (785)
Q Consensus       536 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  601 (785)
                      ++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus       451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            66777777777776 4554 3556677777777777776666666777777777777777665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-47  Score=439.02  Aligned_cols=456  Identities=18%  Similarity=0.266  Sum_probs=277.4

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCC-----------CCCCCCEEEcccCcccccCCccc
Q 003931          102 GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIG-----------SMSNLQLVELFNNSFTGQIPSSL  170 (785)
Q Consensus       102 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----------~l~~L~~L~L~~n~~~~~~~~~l  170 (785)
                      .+++.|+|+++.+.|.+|..++++++|++|+|++|.+... +..++           .+..|+ ++++++.+.+.+|..+
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~-~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGT-CCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccC-CccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence            3566666666666666666666666666666666654210 11111           022233 3444444433333332


Q ss_pred             cCC-CCCCEEEcccCcCcccCCccccCCcccCeeecc--ccccccCCchhccCCCCCCEEEccCCCCccc----------
Q 003931          171 GQL-KNLQHLDLRMNALNYTIPPELGLCTNLSYLALA--VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE----------  237 (785)
Q Consensus       171 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~--~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~----------  237 (785)
                      ..+ ..+..+++....+.      ......++.+.+.  .|++++ +|..++++++|++|++++|.+++.          
T Consensus       159 ~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  231 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN  231 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred             HHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence            210 01111111111110      0011122222222  466666 677777777777777777777764          


Q ss_pred             -------cCccccC--CCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcc-ccc-cCChhccCC------CCCCEE
Q 003931          238 -------ISANLIG--NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNN-FSG-PIPSEIEKL------TSLENL  300 (785)
Q Consensus       238 -------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L  300 (785)
                             +|.. ++  ++++|++|++++|.+.+.+|..++.+++|++|++++|+ ++| .+|..++.+      ++|++|
T Consensus       232 ~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          232 SEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             SHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             cchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                   6655 55  67777777777777777777777777777777777776 666 666666554      677777


Q ss_pred             ECcCCcccccCCc--cCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCC-CcEEEecCc
Q 003931          301 DLSGNQLSGTIPP--TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVK-LNKFSVFTN  377 (785)
Q Consensus       301 ~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n  377 (785)
                      ++++|+++ .+|.  .++.+++|++|++++|+++|.+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence            77777776 5665  66677777777777777766666 6666666667777666666 55555666665 666666666


Q ss_pred             cccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc-------CCCCCcEEEcccC
Q 003931          378 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR-------NCSNLNRVRFDGN  450 (785)
Q Consensus       378 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~n  450 (785)
                      .++ .+|..+....                       +.+|+.|++++|.+.+..|..+.       .+++|++|++++|
T Consensus       388 ~l~-~lp~~~~~~~-----------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N  443 (636)
T 4eco_A          388 KLK-YIPNIFDAKS-----------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN  443 (636)
T ss_dssp             CCS-SCCSCCCTTC-----------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred             cCc-ccchhhhhcc-----------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence            555 4444333221                       11444445555554444444444       4455555666666


Q ss_pred             ccccccCcccCCCCCCcEEEccCCeeeeecccchh-------cccccceeccccceeeeccCcchh--ccccCCeeeccc
Q 003931          451 QFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWG-------ECRNLSNLQLDRNRISGGIPAELG--NLTRLGVLSLDS  521 (785)
Q Consensus       451 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~  521 (785)
                      +++...+..+..+++|+.|++++|++....+..+.       .+++|+.|++++|.++ .+|..+.  .+++|+.|++++
T Consensus       444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~  522 (636)
T 4eco_A          444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY  522 (636)
T ss_dssp             CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred             ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence            55544444444556666666666666532222222       2237788888888877 5666665  788888888888


Q ss_pred             CccccCCCcccccCCCCCeecc------cCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCc
Q 003931          522 NELTGKIPTDLGKLVKLFNLNL------SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND  595 (785)
Q Consensus       522 n~l~~~~~~~l~~l~~L~~L~l------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  595 (785)
                      |++++ +|..+..+++|+.|++      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.|++++|+
T Consensus       523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~  598 (636)
T 4eco_A          523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP  598 (636)
T ss_dssp             SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred             CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence            88886 6777788888888888      56778888898899999999999999999 56777665  789999999998


Q ss_pred             Cccc
Q 003931          596 LSGE  599 (785)
Q Consensus       596 l~~~  599 (785)
                      +...
T Consensus       599 l~~~  602 (636)
T 4eco_A          599 NISI  602 (636)
T ss_dssp             TCEE
T ss_pred             Cccc
Confidence            7643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-46  Score=423.31  Aligned_cols=486  Identities=21%  Similarity=0.198  Sum_probs=228.1

Q ss_pred             EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC
Q 003931          107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL  186 (785)
Q Consensus       107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  186 (785)
                      .+.+++.++. +|..+.  ++|++|++++|++++..|..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+
T Consensus        10 c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            4556666653 333332  4666666666666655556666666666666666666665556666666666666666666


Q ss_pred             cccCCccccCCcccCeeecccccccc-CCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCc
Q 003931          187 NYTIPPELGLCTNLSYLALAVNQLSG-GLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP  265 (785)
Q Consensus       187 ~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  265 (785)
                      ++..+..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++...++++++|++|++++|.+.+..|.
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            65555556666666666666666554 23445555566666666665543445443455555555555555555555555


Q ss_pred             cCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCC
Q 003931          266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL  345 (785)
Q Consensus       266 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  345 (785)
                      .++.+++|++|++++|.+....+..+..+++|++|++++|++++....                     .......+++|
T Consensus       167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~~~~L  225 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEVSSPM  225 (549)
T ss_dssp             TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCCCCCC
T ss_pred             hhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhhhhcc
Confidence            555555555555555554422212223455555555555555432100                     00111234445


Q ss_pred             CEEEccCCcCccccCc----cccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEE
Q 003931          346 VAFDVNTNQLHGELPE----NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL  421 (785)
Q Consensus       346 ~~L~l~~n~l~~~~~~----~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  421 (785)
                      +.+++++|.+.+..+.    .+..+.+++.+++++|.+.+......                   .....+.....++.+
T Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~L~~L  286 (549)
T 2z81_A          226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP-------------------SESDVVSELGKVETV  286 (549)
T ss_dssp             CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-------------------CTTTCCCCCTTCCEE
T ss_pred             cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc-------------------cchhhhhhhcccccc
Confidence            5555555544433222    22334444444444444433110000                   000111222334444


Q ss_pred             EccCCCCccc-----CCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeeccc---chhccccccee
Q 003931          422 TVNGNNFTGS-----LPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP---DWGECRNLSNL  493 (785)
Q Consensus       422 ~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L  493 (785)
                      ++.++.+...     .+..+...++|+++++++|.+.......+..+++|+.|++++|++.+..|.   .++.+++|+.|
T Consensus       287 ~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L  366 (549)
T 2z81_A          287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL  366 (549)
T ss_dssp             EEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred             cccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence            4444333211     111122233444444444444322222223344455555555544443321   23444455555


Q ss_pred             ccccceeeeccC--cchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCc
Q 003931          494 QLDRNRISGGIP--AELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNK  571 (785)
Q Consensus       494 ~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  571 (785)
                      ++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+  .++|++|++++|+
T Consensus       367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~  442 (549)
T 2z81_A          367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN  442 (549)
T ss_dssp             ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSC
T ss_pred             EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCC
Confidence            555555543321  23445555555555555555 34444555555555555555554 222222  1345555555555


Q ss_pred             CccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCcccccCCCCceEeccCCcee
Q 003931          572 LTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS  646 (785)
Q Consensus       572 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  646 (785)
                      +++.+    ..+++|+.|++++|+++ .+|. ...+..++. +++++|.+++.+|..++.+++|++|++++|.+.
T Consensus       443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          443 LDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV-MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             CSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE-EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred             hhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE-EecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence            55421    24445555555555554 3332 223333332 444444444444444444444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7e-46  Score=416.97  Aligned_cols=460  Identities=21%  Similarity=0.214  Sum_probs=261.1

Q ss_pred             EEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCC
Q 003931           57 HLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATN  136 (785)
Q Consensus        57 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  136 (785)
                      +|++++|.++. +|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus         4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCccc-cccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            34444444442 222222  45555555555554 233333455555555555555555555555555556666666666


Q ss_pred             cccccCCcCCCCCCCCCEEEcccCcccc-cCCccccCCCCCCEEEcccCcCcccCCccccCCccc--Ceeecccccc--c
Q 003931          137 KFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL--SYLALAVNQL--S  211 (785)
Q Consensus       137 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i--~  211 (785)
                      +++. +|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            5553 3332  55666666666666654 245566666666666666666654   234445555  6666666666  5


Q ss_pred             cCCchhccCCC-CCCEEEccCCCCccccCccccCCCCCCCEEEeecCc-------CcccCCccCcCCCCCcEEECcCccc
Q 003931          212 GGLPLSLSNLS-KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS-------FMGNIPPEIGLLTKLQYLFLYRNNF  283 (785)
Q Consensus       212 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l  283 (785)
                      +..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.       +.+.+| .++.+++|+.|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            55555554443 223456666666666666556666777777777665       443333 455555555555555555


Q ss_pred             cccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC-----CCCCCCCEEEccCCcCccc
Q 003931          284 SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-----GSMASLVAFDVNTNQLHGE  358 (785)
Q Consensus       284 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~  358 (785)
                      ++..+..+.                    ..+ ..++|++|++++|++++.+|..+     +.+++|+.++++.|.+  .
T Consensus       233 ~~~~~~~~~--------------------~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~  289 (520)
T 2z7x_B          233 TWNSFIRIL--------------------QLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G  289 (520)
T ss_dssp             EHHHHHHHH--------------------HHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred             CHHHHHHHH--------------------HHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence            432211110                    000 12345555555555554445444     5555555555555554  2


Q ss_pred             cC-ccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc
Q 003931          359 LP-ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR  437 (785)
Q Consensus       359 ~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  437 (785)
                      +| ..+..+                    +..  .+++.|++++|.+...                        .  .+.
T Consensus       290 ~p~~~~~~~--------------------~~~--~~L~~L~l~~n~l~~~------------------------~--~~~  321 (520)
T 2z7x_B          290 FPQSYIYEI--------------------FSN--MNIKNFTVSGTRMVHM------------------------L--CPS  321 (520)
T ss_dssp             SCTHHHHHH--------------------HHT--CCCSEEEEESSCCCCC------------------------C--CCS
T ss_pred             cchhhhhcc--------------------ccc--CceeEEEcCCCccccc------------------------c--chh
Confidence            22 122111                    000  0233333333332211                        0  012


Q ss_pred             CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeee--ecccchhcccccceeccccceeeeccCc-chhccccC
Q 003931          438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVG--EISPDWGECRNLSNLQLDRNRISGGIPA-ELGNLTRL  514 (785)
Q Consensus       438 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L  514 (785)
                      .+++|++|++++|++++..+..++.+++|+.|++++|++.+  ..|..+..+++|+.|++++|.+++.+|. .+..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            34455555555555555455555555666666666666654  3345566677777777777777663443 36677788


Q ss_pred             CeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCC
Q 003931          515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN  594 (785)
Q Consensus       515 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N  594 (785)
                      +.|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            8888888888766665554  68888999999888 67777778899999999999988544444888899999999999


Q ss_pred             cCcccCC
Q 003931          595 DLSGEIP  601 (785)
Q Consensus       595 ~l~~~~p  601 (785)
                      ++.+..+
T Consensus       479 ~~~c~c~  485 (520)
T 2z7x_B          479 PWDCSCP  485 (520)
T ss_dssp             CBCCCHH
T ss_pred             CCcccCC
Confidence            9886543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.1e-47  Score=432.17  Aligned_cols=442  Identities=19%  Similarity=0.228  Sum_probs=300.0

Q ss_pred             CCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCC------cc------cCChhhhcCCCCCcEEECCCCCCcccCCc
Q 003931           53 PSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKL------SG------LIPERLFTNLGKLEYLNLTENQFQGKLSP  120 (785)
Q Consensus        53 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i------~~------~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~  120 (785)
                      .+++.|+|+++.+.+.+|..++.+++|++|+|++|.+      .+      .+|...   +..|+ ++++++.+.+..+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            3566667777666666666666777777777766654      11      222222   22333 44444444433333


Q ss_pred             cccC-------------------CCCCcEEEc--CCCcccccCCcCCCCCCCCCEEEcccCccccc--------------
Q 003931          121 NVSK-------------------LSNLIDLRL--ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ--------------  165 (785)
Q Consensus       121 ~~~~-------------------l~~L~~L~L--~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~--------------  165 (785)
                      .+..                   ...++.+.+  ..|++++ +|..++++++|++|++++|.+++.              
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            3321                   111222222  2567777 777888888888888888888874              


Q ss_pred             ---CCcccc--CCCCCCEEEcccCcCcccCCccccCCcccCeeeccccc-ccc-CCchhccCC------CCCCEEEccCC
Q 003931          166 ---IPSSLG--QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ-LSG-GLPLSLSNL------SKLNDLGLSDN  232 (785)
Q Consensus       166 ---~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~l~~l------~~L~~L~L~~n  232 (785)
                         +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               788887  88888888888888888888888888888888888887 877 777777765      88888888888


Q ss_pred             CCccccCc-cccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCC-CCEEECcCCccccc
Q 003931          233 FLSGEISA-NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTS-LENLDLSGNQLSGT  310 (785)
Q Consensus       233 ~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~  310 (785)
                      .++ .+|. ..++++++|++|++++|.+.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence            888 7776 237888888888888888887888 7888888888888888887 67777888888 888888888888 6


Q ss_pred             CCccCcCCC--CCCEEEcccccccCCCCCCCC-------CCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccc
Q 003931          311 IPPTLWNLT--NLLSLQLFSNNLSGTIPPEIG-------SMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG  381 (785)
Q Consensus       311 ~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~  381 (785)
                      +|..+..++  +|++|++++|.+++.+|..+.       .+++|+.|++++|.+....+..+..+++|+.|++++|+++ 
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-  470 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-  470 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence            777776654  788888888888888887777       6778888888888887433334555777777777777777 


Q ss_pred             cCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc--CCCCCcEEEcccCccccccCcc
Q 003931          382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR--NCSNLNRVRFDGNQFTGNITKA  459 (785)
Q Consensus       382 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~  459 (785)
                      .+|........                 ..+..+.+|+.|++++|.++ .+|..+.  .+++|++|++++|++++ +|..
T Consensus       471 ~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~  531 (636)
T 4eco_A          471 EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ  531 (636)
T ss_dssp             BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence            45543332211                 00011114444444444444 3333333  45555555555555554 4444


Q ss_pred             cCCCCCCcEEEc------cCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCcccc
Q 003931          460 FGVHPRLDFIRL------SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG  526 (785)
Q Consensus       460 ~~~~~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  526 (785)
                      +..+++|+.|++      ++|++.+.+|..+..+++|+.|++++|.+ +.+|..+.  ++|+.|++++|++..
T Consensus       532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            445555555555      56777777888888888888888888888 46676654  788888888887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=414.14  Aligned_cols=453  Identities=21%  Similarity=0.222  Sum_probs=364.6

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      ++|++++|+++.+ |..+.  ++|++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHV-PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSC-CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcccc-ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            6899999999965 44444  89999999999999999899999999999999999999999999999999999999999


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCcc-cCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC--CEEEcccCcc--
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQG-KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL--QLVELFNNSF--  162 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~L~~n~~--  162 (785)
                      .++ .+|..   .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            998 67764   79999999999999997 467899999999999999999986   457778888  9999999999  


Q ss_pred             cccCCccccCCC-CCCEEEcccCcCcccCC-ccccCCcccCeeeccccc-------cccCCchhccCCCCCCEEEccCCC
Q 003931          163 TGQIPSSLGQLK-NLQHLDLRMNALNYTIP-PELGLCTNLSYLALAVNQ-------LSGGLPLSLSNLSKLNDLGLSDNF  233 (785)
Q Consensus       163 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------i~~~~~~~l~~l~~L~~L~L~~n~  233 (785)
                      .+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|.       +.+.++ .++.+++|+.|++++|.
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            778888877765 34467888888776555 457789999999999997       666555 78899999999999998


Q ss_pred             CccccCccccC--CCCCCCEEEeecCcCcccCCccC-----cCCCCCcEEECcCccccccCC-hhccCC---CCCCEEEC
Q 003931          234 LSGEISANLIG--NWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNNFSGPIP-SEIEKL---TSLENLDL  302 (785)
Q Consensus       234 l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~L  302 (785)
                      +.+..+.....  ..++|++|++++|.+.+.+|..+     +.++.|+.+++++|.+  .+| .++..+   .+|+.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence            87643332111  24689999999999999999988     8999999999999998  455 555544   78999999


Q ss_pred             cCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc--ccCccccccCCCcEEEecCcccc
Q 003931          303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNFS  380 (785)
Q Consensus       303 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~l~  380 (785)
                      ++|.+.+..  .+..+++|++|++++|++++..|..++.+++|++|++++|++.+  .+|..+..+++|+.|++++|.++
T Consensus       310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence            999987542  13688999999999999999899999999999999999999987  56677888899999999988888


Q ss_pred             ccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCccc
Q 003931          381 GSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAF  460 (785)
Q Consensus       381 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  460 (785)
                      +.+|.......++|+.|++++|++++..|..+.  .+|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus       388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~  464 (520)
T 2z7x_B          388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF  464 (520)
T ss_dssp             CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence            766654333334777777777777766555443  56777777777766 455555566666666666666664444445


Q ss_pred             CCCCCCcEEEccCCeeee
Q 003931          461 GVHPRLDFIRLSGNQFVG  478 (785)
Q Consensus       461 ~~~~~L~~L~Ls~n~l~~  478 (785)
                      ..+++|+.|++++|++.+
T Consensus       465 ~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TTCTTCCEEECCSSCBCC
T ss_pred             ccCCcccEEECcCCCCcc
Confidence            666666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.8e-44  Score=411.59  Aligned_cols=530  Identities=21%  Similarity=0.191  Sum_probs=322.1

Q ss_pred             EEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCC
Q 003931           33 YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN  112 (785)
Q Consensus        33 ~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n  112 (785)
                      +.+.++-.++.++.+ +.  +++++|+|++|.|+.+.+..|.++++|++|+|++|+|+ .+|...|.++++|++|+|++|
T Consensus        35 ~~~c~~~~l~~vP~~-lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFYKIPDN-LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCSSCCSS-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcCccCCC-CC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence            344444445544421 11  25566666666666555555666666666666666665 345555566666666666666


Q ss_pred             CCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcccCC
Q 003931          113 QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNYTIP  191 (785)
Q Consensus       113 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~  191 (785)
                      ++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+. .|..++.+++|++|++++|.+++..+
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            66655555566666666666666666555555566666666666666665532 34555566666666666666665555


Q ss_pred             ccccCCcccC----eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCc------c
Q 003931          192 PELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM------G  261 (785)
Q Consensus       192 ~~~~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------~  261 (785)
                      ..+..+.+++    .++++.|.++...+..+ ....++.+++.+|.....+....+..+..++...+..+...      .
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            5554443332    44555555554333322 22344556666655544444444555555555554432211      1


Q ss_pred             cCCccCcCCCCCcEEECcCcccc---ccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCC
Q 003931          262 NIPPEIGLLTKLQYLFLYRNNFS---GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPE  338 (785)
Q Consensus       262 ~~~~~~~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  338 (785)
                      .....+..+..+....+..+...   ...+..+..+.+++.+++.++.+....  .+.....|+.|++.+|.+.+..+  
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--  345 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT--  345 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC--
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc--
Confidence            12222333344444444333221   122333445556666666666555332  24445566666666666553322  


Q ss_pred             CCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccce--ecCCccccCCC
Q 003931          339 IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS--GELPHELCSGF  416 (785)
Q Consensus       339 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~  416 (785)
                       ..+..|+.+++..|......  ....++                         +++.+++++|.+.  +..+..+....
T Consensus       346 -~~l~~L~~l~l~~n~~~~~~--~~~~l~-------------------------~L~~L~ls~n~l~~~~~~~~~~~~~~  397 (635)
T 4g8a_A          346 -LKLKSLKRLTFTSNKGGNAF--SEVDLP-------------------------SLEFLDLSRNGLSFKGCCSQSDFGTI  397 (635)
T ss_dssp             -CBCTTCCEEEEESCCSCCBC--CCCBCT-------------------------TCCEEECCSSCCBEEEECCHHHHSCS
T ss_pred             -ccchhhhhcccccccCCCCc--cccccc-------------------------ccccchhhccccccccccccchhhhh
Confidence             23445555555555443221  112233                         3444444444332  22344445555


Q ss_pred             CCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEccCCeeeeecccchhcccccceecc
Q 003931          417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL  495 (785)
Q Consensus       417 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  495 (785)
                      +++.+++..+..... +..+..+++|+.+++.++......+ ..|..+++++.++++.|.+.+..+..+..+++++.|++
T Consensus       398 ~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L  476 (635)
T 4g8a_A          398 SLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  476 (635)
T ss_dssp             CCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             hhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence            666777766665543 3456667778888877776655433 55677888888888888888888888888888888888


Q ss_pred             ccceee-eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCcc
Q 003931          496 DRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG  574 (785)
Q Consensus       496 ~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  574 (785)
                      ++|.+. +..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++
T Consensus       477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            888754 4567888889999999999999998888889999999999999999998888889999999999999999999


Q ss_pred             CCCcccccc-CCCcEEeCCCCcCcccC
Q 003931          575 DVPQELGRF-DKLLSLNLSHNDLSGEI  600 (785)
Q Consensus       575 ~~p~~l~~l-~~L~~L~ls~N~l~~~~  600 (785)
                      ..|..+..+ ++|+.|++++|++....
T Consensus       557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            888888887 68999999999987543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.6e-45  Score=424.08  Aligned_cols=393  Identities=18%  Similarity=0.258  Sum_probs=259.0

Q ss_pred             ccCeeeccc--cccccCCchhccCCCCCCEEEccCCCCcc-----------------ccCccccC--CCCCCCEEEeecC
Q 003931          199 NLSYLALAV--NQLSGGLPLSLSNLSKLNDLGLSDNFLSG-----------------EISANLIG--NWTELESLQIQNN  257 (785)
Q Consensus       199 ~L~~L~l~~--n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~--~l~~L~~L~L~~n  257 (785)
                      .++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+|.. ++  ++++|++|++++|
T Consensus       424 ~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N  501 (876)
T 4ecn_A          424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC  501 (876)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC
T ss_pred             chhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC
Confidence            344444443  77776 77788888888888888888886                 26666 45  7888888888888


Q ss_pred             cCcccCCccCcCCCCCcEEECcCcc-ccc-cCChhccCCC-------CCCEEECcCCcccccCCc--cCcCCCCCCEEEc
Q 003931          258 SFMGNIPPEIGLLTKLQYLFLYRNN-FSG-PIPSEIEKLT-------SLENLDLSGNQLSGTIPP--TLWNLTNLLSLQL  326 (785)
Q Consensus       258 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L  326 (785)
                      .+.+.+|..++.+++|++|++++|+ +++ .+|..++.++       +|+.|++++|.++ .+|.  .++.+++|++|++
T Consensus       502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L  580 (876)
T 4ecn_A          502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC  580 (876)
T ss_dssp             TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred             CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence            8888888888888888888888887 776 6776665544       8888888888887 6776  7788888888888


Q ss_pred             ccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCC-CcEEEecCccccccCCcccccCC-CCccEEEcccccc
Q 003931          327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVK-LNKFSVFTNNFSGSIPGDFGKFS-PSLINVSFSNNSF  404 (785)
Q Consensus       327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l  404 (785)
                      ++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+.... ++|+.|++++|.+
T Consensus       581 s~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             TTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             CCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence            888877 666 7777888888888888877 67777777777 777777777776 5565554432 2366666666666


Q ss_pred             eecCCcccc-----CCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeee
Q 003931          405 SGELPHELC-----SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE  479 (785)
Q Consensus       405 ~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  479 (785)
                      .+.+|...+     ...+|+.|++++|.+....+..+..+++|+.|++++|++.......+....               
T Consensus       657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~---------------  721 (876)
T 4ecn_A          657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD---------------  721 (876)
T ss_dssp             TTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT---------------
T ss_pred             CCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc---------------
Confidence            654442211     122455555555555432222233444455555554444422222221110               


Q ss_pred             cccchhcccccceeccccceeeeccCcchh--ccccCCeeecccCccccCCCcccccCCCCCeecccC------CcccCc
Q 003931          480 ISPDWGECRNLSNLQLDRNRISGGIPAELG--NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN------NHLTGE  551 (785)
Q Consensus       480 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~------n~l~~~  551 (785)
                        +.+..+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++      |++.+.
T Consensus       722 --~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          722 --GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             --SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             --ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc
Confidence              00112336666666666666 4555554  66667777777777665 566666677777776655      778888


Q ss_pred             CCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccC
Q 003931          552 IPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSL  621 (785)
Q Consensus       552 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l  621 (785)
                      +|..+..+++|++|++++|++ +.+|..+.  ++|+.|++++|++....+..+........ ..+++|.+
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~-~~L~~n~~  863 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGM-YVLLYDKT  863 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTC-CEEECCTT
T ss_pred             ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchh-eeecCCCc
Confidence            888888899999999999988 57777665  58899999999887665555544443332 45555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.9e-45  Score=421.71  Aligned_cols=390  Identities=21%  Similarity=0.235  Sum_probs=235.4

Q ss_pred             CcccccCCcCCCCCCCCCEEEcccCcccc-----------------cCCcccc--CCCCCCEEEcccCcCcccCCccccC
Q 003931          136 NKFSGPIPGDIGSMSNLQLVELFNNSFTG-----------------QIPSSLG--QLKNLQHLDLRMNALNYTIPPELGL  196 (785)
Q Consensus       136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~  196 (785)
                      |.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..++.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            55555 55566666666666666666665                 2555555  6666666666666666666666666


Q ss_pred             CcccCeeeccccc-ccc-CCchhccCCC-------CCCEEEccCCCCccccCc-cccCCCCCCCEEEeecCcCcccCCcc
Q 003931          197 CTNLSYLALAVNQ-LSG-GLPLSLSNLS-------KLNDLGLSDNFLSGEISA-NLIGNWTELESLQIQNNSFMGNIPPE  266 (785)
Q Consensus       197 l~~L~~L~l~~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~  266 (785)
                      +++|+.|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|. ..++++++|+.|++++|.+. .+| .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            6666666666665 555 4555444333       6666666666665 5554 12556666666666666665 455 5


Q ss_pred             CcCCCCCcEEECcCccccccCChhccCCCC-CCEEECcCCcccccCCccCcCCCC--CCEEEcccccccCCCCCCC---C
Q 003931          267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTS-LENLDLSGNQLSGTIPPTLWNLTN--LLSLQLFSNNLSGTIPPEI---G  340 (785)
Q Consensus       267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~~---~  340 (785)
                      ++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++++.+|...   +
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            666666666666666665 55555666665 666666666665 45555554433  6666666666655443211   1


Q ss_pred             --CCCCCCEEEccCCcCccccCccc-cccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCC
Q 003931          341 --SMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFA  417 (785)
Q Consensus       341 --~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  417 (785)
                        .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|+++ .+|..+.....                 ....++++
T Consensus       669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------~~l~nl~~  729 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-----------------GNYKNTYL  729 (876)
T ss_dssp             TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-----------------SCCTTGGG
T ss_pred             cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-----------------ccccccCC
Confidence              2235555555555555 233322 24444444444444444 23322211110                 00111227


Q ss_pred             CcEEEccCCCCcccCCcccc--CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceecc
Q 003931          418 LEELTVNGNNFTGSLPACLR--NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL  495 (785)
Q Consensus       418 L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  495 (785)
                      |+.|++++|.++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++|+                  ++
T Consensus       730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~l  789 (876)
T 4ecn_A          730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DA  789 (876)
T ss_dssp             CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CT
T ss_pred             ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------Cc
Confidence            888888888887 5666665  78888888888888877 56677778888888887765                  45


Q ss_pred             ccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931          496 DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT  573 (785)
Q Consensus       496 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  573 (785)
                      ++|.+.+.+|..+..+++|+.|+|++|.+ +.+|..+.  ++|+.|++++|++....+..+.....+..+.+.+|+..
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            66777777777777788888888888887 46666654  57888888888877555555555555566666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.7e-43  Score=407.07  Aligned_cols=528  Identities=19%  Similarity=0.186  Sum_probs=400.0

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC
Q 003931            9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK   88 (785)
Q Consensus         9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~   88 (785)
                      +.+-++-+++.++ ..+.  +++++|||++|+|+.+.+.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~~vP-~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCC-SSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccC-CCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            3444444566443 2221  479999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCccccc-CCcCCCCCCCCCEEEcccCcccccCC
Q 003931           89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP-IPGDIGSMSNLQLVELFNNSFTGQIP  167 (785)
Q Consensus        89 i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~  167 (785)
                      ++ .+|...|.++++|++|+|++|++++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|.+++..+
T Consensus       112 l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          112 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            98 67888889999999999999999988888899999999999999999764 57788899999999999999998888


Q ss_pred             ccccCCCCC----CEEEcccCcCcccCCccccCCcccCeeecccccccc-CCchhccCCCCCCEEEccCCCCcc-----c
Q 003931          168 SSLGQLKNL----QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG-GLPLSLSNLSKLNDLGLSDNFLSG-----E  237 (785)
Q Consensus       168 ~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~-----~  237 (785)
                      ..+..+.++    ..++++.|.+....+..+ ....++.+++..|.... ..+..+..+..++...+..+....     .
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            877665544    478999999986555444 44567788888886653 234566778888777765443221     1


Q ss_pred             cCccccCCCCCCCEEEeecCcCc---ccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCcc
Q 003931          238 ISANLIGNWTELESLQIQNNSFM---GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT  314 (785)
Q Consensus       238 ~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  314 (785)
                      .....+..+..+....+..+...   ...+..+..+..++.+.+.++.+.+.  ..+.....|+.|++++|.+.+..+  
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--  345 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT--  345 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC--
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc--
Confidence            12222444556666666554332   23344566778899999999988754  346777899999999999886544  


Q ss_pred             CcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc--ccCccccccCCCcEEEecCccccccCCcccccCCC
Q 003931          315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSP  392 (785)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~  392 (785)
                       ..++.|+.+++..|.....  .....+++|+.++++.|.+..  ..+..+..+.+++.+++..+...            
T Consensus       346 -~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~------------  410 (635)
T 4g8a_A          346 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI------------  410 (635)
T ss_dssp             -CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE------------
T ss_pred             -ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc------------
Confidence             3467889999999987643  345679999999999998853  23444445555555555444433            


Q ss_pred             CccEEEcccccceecCCccccCCCCCcEEEccCCCCcccC-CccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEc
Q 003931          393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSL-PACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL  471 (785)
Q Consensus       393 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  471 (785)
                                   .. +..+..+..|+.+++..++..... +..+..+.+++.++++.|.+.+..+..+..++.++.|++
T Consensus       411 -------------~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L  476 (635)
T 4g8a_A          411 -------------TM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  476 (635)
T ss_dssp             -------------EE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             -------------cc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence                         22 223445556666666666554433 345667778888888888888777777888888888888


Q ss_pred             cCCeee-eecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccC
Q 003931          472 SGNQFV-GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG  550 (785)
Q Consensus       472 s~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  550 (785)
                      ++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|++++|++++
T Consensus       477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            888743 4566778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCcccccC-CCCCeEecCCCcCcc
Q 003931          551 EIPKSISNL-TELAYLDLSNNKLTG  574 (785)
Q Consensus       551 ~~p~~~~~l-~~L~~L~Ls~n~l~~  574 (785)
                      ..|..+..+ ++|++|++++|.+..
T Consensus       557 ~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            888888877 678889998888864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-42  Score=390.21  Aligned_cols=457  Identities=18%  Similarity=0.181  Sum_probs=328.5

Q ss_pred             CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEE
Q 003931            4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD   83 (785)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   83 (785)
                      +...+++++++|++++++. .+.  ++|++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3455789999999986543 332  7899999999999999888999999999999999999998899999999999999


Q ss_pred             CCCCCCcccCChhhhcCCCCCcEEECCCCCCccc-CCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC--CEEEcccC
Q 003931           84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL--QLVELFNN  160 (785)
Q Consensus        84 Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~L~~n  160 (785)
                      +++|.++ .+|..   .+++|++|++++|.+++. .|..|.++++|++|++++|++++.   .+..+++|  ++|++++|
T Consensus       107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          107 VSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             CCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            9999998 67875   789999999999999874 357899999999999999998853   45555666  99999999


Q ss_pred             cc--cccCCccccCCC-CCCEEEcccCcCcccCCc-cccCCcccCeeeccccccc----cCCchhccCCCCCCEEEccCC
Q 003931          161 SF--TGQIPSSLGQLK-NLQHLDLRMNALNYTIPP-ELGLCTNLSYLALAVNQLS----GGLPLSLSNLSKLNDLGLSDN  232 (785)
Q Consensus       161 ~~--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~n  232 (785)
                      .+  .+..|..+..+. ..-++++++|.+.+.++. .+..+++|+.+++++|...    ......+..+++|+.++++++
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            98  777888777664 122567788887765554 3567889999999988521    122345778888999988888


Q ss_pred             CCccccCccc--cCCCCCCCEEEeecCcCcccCCccC-----cCCCCCcEEECcCccccccCC-hhccC---CCCCCEEE
Q 003931          233 FLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNNFSGPIP-SEIEK---LTSLENLD  301 (785)
Q Consensus       233 ~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~---l~~L~~L~  301 (785)
                      .+.+......  ....++|++|++++|.+.+.+|..+     ..++.|+.++++.+.+  .+| .++..   ..+|+.|+
T Consensus       260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred             cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence            7664321110  1123589999999999988888877     6777777777777776  344 33322   26799999


Q ss_pred             CcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc--ccCccccccCCCcEEEecCccc
Q 003931          302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNF  379 (785)
Q Consensus       302 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~l  379 (785)
                      +++|.+....  ....+++|++|++++|.+++..|..++.+++|+.|++++|++++  .+|..+..+++|+.+++++|++
T Consensus       338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred             ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence            9999886432  12678889999999999998888888999999999999998886  3355677788888888888887


Q ss_pred             cccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcc
Q 003931          380 SGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKA  459 (785)
Q Consensus       380 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  459 (785)
                      ++.+|.......++|+.|++++|++++..|..+.  .+|++|++++|.++. +|..+..+++|++|++++|++++..+..
T Consensus       416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~  492 (562)
T 3a79_B          416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGV  492 (562)
T ss_dssp             BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred             CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence            7756554333334666666666666655444332  455666666665552 3333335555555555555555433333


Q ss_pred             cCCCCCCcEEEccCCeee
Q 003931          460 FGVHPRLDFIRLSGNQFV  477 (785)
Q Consensus       460 ~~~~~~L~~L~Ls~n~l~  477 (785)
                      +..+++|+.|++++|++.
T Consensus       493 ~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          493 FDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TTTCTTCCCEECCSCCBC
T ss_pred             HhcCCCCCEEEecCCCcC
Confidence            445555555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-42  Score=392.48  Aligned_cols=460  Identities=21%  Similarity=0.200  Sum_probs=253.0

Q ss_pred             cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931           56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT  135 (785)
Q Consensus        56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  135 (785)
                      +++++++|.++. +|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            445555554443 222221  44555555555554 23333345555555555555555555555555555555555555


Q ss_pred             CcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcccCCccccCCccc--Ceeecccccc--
Q 003931          136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL--SYLALAVNQL--  210 (785)
Q Consensus       136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i--  210 (785)
                      |+++ .+|..  .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            5555 23332  455555555555555542 245555666666666666655432   23333333  6666666655  


Q ss_pred             ccCCchhccCCC--CCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC-----cccCCccCcCCCCCcEEECcCccc
Q 003931          211 SGGLPLSLSNLS--KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF-----MGNIPPEIGLLTKLQYLFLYRNNF  283 (785)
Q Consensus       211 ~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l  283 (785)
                      ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|..     .+. ...+..+++|+.++++++.+
T Consensus       184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEE
T ss_pred             cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcC
Confidence            555555554433  22 4456666666555555566666666666666641     111 12234444555555444443


Q ss_pred             cccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC-----CCCCCCCEEEccCCcCccc
Q 003931          284 SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-----GSMASLVAFDVNTNQLHGE  358 (785)
Q Consensus       284 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~  358 (785)
                      .+..                   +.+ ++.. ...++|++|++++|.+++.+|..+     ..++.|+.++++.+.+  .
T Consensus       262 ~~~~-------------------~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~  318 (562)
T 3a79_B          262 TWKC-------------------SVK-LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L  318 (562)
T ss_dssp             CHHH-------------------HHH-HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred             cHHH-------------------HHH-HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence            3211                   110 1111 112356666666666665555554     4444444444444443  2


Q ss_pred             cCc-cccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc
Q 003931          359 LPE-NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR  437 (785)
Q Consensus       359 ~~~-~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  437 (785)
                      +|. .+..+                    + .. .+++.+++++|.+                        ....  ...
T Consensus       319 ~p~~~~~~~--------------------~-~~-~~L~~L~l~~n~~------------------------~~~~--~~~  350 (562)
T 3a79_B          319 FSKEALYSV--------------------F-AE-MNIKMLSISDTPF------------------------IHMV--CPP  350 (562)
T ss_dssp             SCHHHHHHH--------------------H-HT-CCCSEEEEESSCC------------------------CCCC--CCS
T ss_pred             cChhhhhhh--------------------h-cc-CcceEEEccCCCc------------------------cccc--Ccc
Confidence            221 11000                    0 00 1233333333333                        2111  113


Q ss_pred             CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeee--cccchhcccccceeccccceeeeccC-cchhccccC
Q 003931          438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE--ISPDWGECRNLSNLQLDRNRISGGIP-AELGNLTRL  514 (785)
Q Consensus       438 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L  514 (785)
                      .+++|++|++++|++++..+..++.+++|+.|++++|++.+.  .|..+..+++|+.|++++|.+++.+| ..+..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            455566666666666655555666666666666666666652  23456677777777777777776333 346777888


Q ss_pred             CeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCC
Q 003931          515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN  594 (785)
Q Consensus       515 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N  594 (785)
                      +.|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence            8888888888766665544  68888899988888 67776678889999999999988544444888899999999999


Q ss_pred             cCcccCC
Q 003931          595 DLSGEIP  601 (785)
Q Consensus       595 ~l~~~~p  601 (785)
                      ++.+..+
T Consensus       508 ~~~c~c~  514 (562)
T 3a79_B          508 PWDCTCP  514 (562)
T ss_dssp             CBCCCHH
T ss_pred             CcCCCcc
Confidence            9886554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.7e-40  Score=361.06  Aligned_cols=372  Identities=21%  Similarity=0.207  Sum_probs=294.9

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCc-ccCCccCCCCCCccEEECCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      +.++.+++.++..+.  +  .++|++|++++|.++.+.+.+|.++++|++|++++|.+. .+.+..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            456777777764433  2  267888888888888887788888888888888888876 34466788888888888888


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCcc--ccCCCCCcEEEcCCCcccccCCcC-CCCCCCCCEEEcccCccc
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKLSNLIDLRLATNKFSGPIPGD-IGSMSNLQLVELFNNSFT  163 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~L~~n~~~  163 (785)
                      |.+++..|. .|.++++|++|++++|.+++..+..  |..+++|++|++++|.+++..|.. +.++++|++|++++|.+.
T Consensus        89 n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETG-AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTT-TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChh-hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            888754444 4588888888888888887644444  888888888888888888776765 788888888888888888


Q ss_pred             ccCCccccCC--CCCCEEEcccCcCcccCCcc--------ccCCcccCeeeccccccccCCchhccCC---CCCCEEEcc
Q 003931          164 GQIPSSLGQL--KNLQHLDLRMNALNYTIPPE--------LGLCTNLSYLALAVNQLSGGLPLSLSNL---SKLNDLGLS  230 (785)
Q Consensus       164 ~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~L~  230 (785)
                      +..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+...   ++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            8777777665  67888888888887654433        2356788888888888887777766543   788888888


Q ss_pred             CCCCccccCc---------cccC--CCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCE
Q 003931          231 DNFLSGEISA---------NLIG--NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN  299 (785)
Q Consensus       231 ~n~l~~~~~~---------~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  299 (785)
                      +|...+....         ..+.  ..++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..|..+++|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence            8865432110         0011  2357999999999999888888999999999999999998888888999999999


Q ss_pred             EECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccc
Q 003931          300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF  379 (785)
Q Consensus       300 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l  379 (785)
                      |++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.+++++|++
T Consensus       328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            99999999888888888999999999999999888888889999999999999999877777778889999999999999


Q ss_pred             cccCC
Q 003931          380 SGSIP  384 (785)
Q Consensus       380 ~~~~~  384 (785)
                      ++..|
T Consensus       408 ~~~~~  412 (455)
T 3v47_A          408 DCSCP  412 (455)
T ss_dssp             CCCTT
T ss_pred             ccCCC
Confidence            88776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-39  Score=359.43  Aligned_cols=365  Identities=21%  Similarity=0.235  Sum_probs=214.3

Q ss_pred             ccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEEC
Q 003931          199 NLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL  278 (785)
Q Consensus       199 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  278 (785)
                      +|++|++++|.+++..|..|.++++|++|++++|.+.+.+++..++++++|++|++++|.+.+..|..|+.+++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            44444444444444444444444555555555554444444444555555555555555555555555555555555555


Q ss_pred             cCccccccCChh--ccCCCCCCEEECcCCcccccCCcc-CcCCCCCCEEEcccccccCCCCCCCCCC--CCCCEEEccCC
Q 003931          279 YRNNFSGPIPSE--IEKLTSLENLDLSGNQLSGTIPPT-LWNLTNLLSLQLFSNNLSGTIPPEIGSM--ASLVAFDVNTN  353 (785)
Q Consensus       279 ~~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~l~~n  353 (785)
                      ++|.+++..|..  |..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+  .+|+.+++++|
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            555555433322  555555555555555555444443 4555555555555555555555444443  44555555555


Q ss_pred             cCccccCccc--------cccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccC---CCCCcEEE
Q 003931          354 QLHGELPENI--------SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCS---GFALEELT  422 (785)
Q Consensus       354 ~l~~~~~~~~--------~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~  422 (785)
                      .+.+..+..+        ..+++                         |+.|++++|.+.+..|..+..   ...++.++
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~-------------------------L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTS-------------------------ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCE-------------------------EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             cccccchhhccccccccccccce-------------------------eeeEecCCCcccccchhhhhccccccceeeEe
Confidence            5543322211        12223                         333333333333333332221   13444555


Q ss_pred             ccCCCCcccCCccccCCCCCcEEEcccCccccccCcccC--CCCCCcEEEccCCeeeeecccchhcccccceecccccee
Q 003931          423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFG--VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI  500 (785)
Q Consensus       423 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i  500 (785)
                      +++|...+...              ..+.+.......+.  ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       246 l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          246 LSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             CTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence            55444332110              01111111111121  135677777777777777777777778888888888888


Q ss_pred             eeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccc
Q 003931          501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL  580 (785)
Q Consensus       501 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  580 (785)
                      ++..|..|.++++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..+..+
T Consensus       312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  391 (455)
T 3v47_A          312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF  391 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence            87777778888888888888888877777788888888888888888887778888888888888888888887777777


Q ss_pred             cccCCCcEEeCCCCcCcccCCc
Q 003931          581 GRFDKLLSLNLSHNDLSGEIPS  602 (785)
Q Consensus       581 ~~l~~L~~L~ls~N~l~~~~p~  602 (785)
                      ..+++|+.|++++|++++.+|.
T Consensus       392 ~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          392 DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCcccEEEccCCCcccCCCc
Confidence            8888899999999988877763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.7e-39  Score=348.96  Aligned_cols=421  Identities=24%  Similarity=0.270  Sum_probs=187.0

Q ss_pred             CCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeec
Q 003931          126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLAL  205 (785)
Q Consensus       126 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  205 (785)
                      ++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|.+++++.+|+.++++.|..           .++++|++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            4444445544444 34444444444444444444444444444444444444333333321           23455555


Q ss_pred             cccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccc
Q 003931          206 AVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG  285 (785)
Q Consensus       206 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  285 (785)
                      ++|.+++. |.   -.++|++|++++|.+++ +|..    +++|++|++++|.+.+ +|..   .++|++|++++|.+++
T Consensus        79 ~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           79 NNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             TTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred             cCCccccC-CC---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence            55555432 21   12445555555555543 3321    2445555555555443 1111   1345555555555543


Q ss_pred             cCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccc
Q 003931          286 PIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISR  365 (785)
Q Consensus       286 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  365 (785)
                       +| +|+++++|++|++++|++++ +|..+   ++|++|++++|++++ +| .++.+++|+.+++++|            
T Consensus       146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N------------  205 (454)
T 1jl5_A          146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN------------  205 (454)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS------------
T ss_pred             -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC------------
Confidence             33 35555555555555555543 33221   345555555555543 23 3444444555554444            


Q ss_pred             cCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEE
Q 003931          366 LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRV  445 (785)
Q Consensus       366 l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  445 (785)
                                  ++++ +|..    .++++.|++++|.+. .+| .+..+++|++|++++|.+++. |.   ..++|++|
T Consensus       206 ------------~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L  262 (454)
T 1jl5_A          206 ------------SLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEAL  262 (454)
T ss_dssp             ------------CCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEE
T ss_pred             ------------cCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEE
Confidence                        4443 2211    125666666666666 444 366666777777777777652 32   23667777


Q ss_pred             EcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhcc-ccCCeeecccCcc
Q 003931          446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNL-TRLGVLSLDSNEL  524 (785)
Q Consensus       446 ~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l  524 (785)
                      ++++|++.+. +.   ..++|+.|++++|.+.+...    ..++|+.|++++|.+++. +    .+ ++|+.|++++|++
T Consensus       263 ~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          263 NVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKL  329 (454)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCC
T ss_pred             ECCCCccccc-Cc---ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcc
Confidence            7777777652 22   23677777777777765321    125777777777777652 2    22 4777888888887


Q ss_pred             ccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCcc--CCCccccccCCCcEEeCCCCcCcccCCc
Q 003931          525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG--DVPQELGRFDKLLSLNLSHNDLSGEIPS  602 (785)
Q Consensus       525 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~  602 (785)
                      ++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.++..+        +.|.+.+.+|.
T Consensus       330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~  393 (454)
T 1jl5_A          330 IE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE  393 (454)
T ss_dssp             SC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------
T ss_pred             cc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc
Confidence            75 4443   467788888888877 4555   46778888888888877  556555432        33555556655


Q ss_pred             ccchhhhhhheeecccccCCC--CCCcccccCCCCceEeccCCceeeecCCcc
Q 003931          603 NLGNLFVLQYMLDLSSNSLSG--TIPQELGKLTSLEILNLSRNQLSGRIPASL  653 (785)
Q Consensus       603 ~~~~l~~l~~~l~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  653 (785)
                      .   +..++. +|+++|.+++  .+|.      +++.|.+.+|.+.+.++.+.
T Consensus       394 ~---~~~L~~-L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~  436 (454)
T 1jl5_A          394 L---PQNLKQ-LHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAH  436 (454)
T ss_dssp             -----------------------------------------------------
T ss_pred             c---cCcCCE-EECCCCcCCccccchh------hHhheeCcCcccCCccccCH
Confidence            3   244554 7888888775  4443      35556677777766555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.7e-38  Score=344.34  Aligned_cols=413  Identities=21%  Similarity=0.282  Sum_probs=181.9

Q ss_pred             CCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC-------------CEEEcccCcccccC
Q 003931          100 NLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL-------------QLVELFNNSFTGQI  166 (785)
Q Consensus       100 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~L~~n~~~~~~  166 (785)
                      ..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            468999999999999 6899999999999999999999999999999998876             555555555553 2


Q ss_pred             CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC
Q 003931          167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW  246 (785)
Q Consensus       167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  246 (785)
                      |..   .++|++|++++|.+++ +|..   .++|++|++++|.+++. +..   .++|++|++++|.+++ +| . ++++
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~-~~~l  152 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-E-LQNS  152 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-C-CTTC
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-c-cCCC
Confidence            221   2455555555555554 3322   24555555555555431 110   1345555555555542 44 1 4555


Q ss_pred             CCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931          247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL  326 (785)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  326 (785)
                      ++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .++++++|+.|++++|.+++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            555555555555543 33221   345555555555543 33 34455555555555555543 2221   134455555


Q ss_pred             ccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEccccccee
Q 003931          327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG  406 (785)
Q Consensus       327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  406 (785)
                      ++|.++ .+| .++.+++|+.|++++|++.                        + +|..    .++++.|++++|.+.+
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~------------------------~-l~~~----~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLK------------------------T-LPDL----PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCS------------------------S-CCSC----CTTCCEEECCSSCCSC
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCC------------------------c-cccc----ccccCEEECCCCcccc
Confidence            555444 333 2444445555555444444                        2 2211    1355556666665554


Q ss_pred             cCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhc
Q 003931          407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGE  486 (785)
Q Consensus       407 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  486 (785)
                       +|..   ..+|+.|++++|.+++.. ..   .++|++|++++|++++...    ..++|+.|++++|++.+ +|..   
T Consensus       272 -l~~~---~~~L~~L~ls~N~l~~l~-~~---~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~-lp~~---  335 (454)
T 1jl5_A          272 -LPEL---PQSLTFLDVSENIFSGLS-EL---PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIE-LPAL---  335 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSEES-CC---CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSC-CCCC---
T ss_pred             -cCcc---cCcCCEEECcCCccCccc-Cc---CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccc-cccc---
Confidence             2221   245666666666665421 11   1466677777776664221    12467777777777765 3332   


Q ss_pred             ccccceeccccceeeeccCcchhccccCCeeecccCcccc--CCCcccccCCCCCeecccCCcccCcCCcccccCCCCCe
Q 003931          487 CRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG--KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAY  564 (785)
Q Consensus       487 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~  564 (785)
                      +++|+.|++++|++++ +|.   .+++|+.|++++|++++  .+|..++.        ++.|.+.+.+|..   +++|++
T Consensus       336 ~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~  400 (454)
T 1jl5_A          336 PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQ  400 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-----------------
T ss_pred             CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCE
Confidence            4677777777777763 444   35777777777777776  45554433        2345555566553   478888


Q ss_pred             EecCCCcCcc--CCCccccccCCCcEEeCCCCcCcccCCcccch
Q 003931          565 LDLSNNKLTG--DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGN  606 (785)
Q Consensus       565 L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  606 (785)
                      |++++|++++  .+|.      +++.|.+.+|.+.+.+|.....
T Consensus       401 L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          401 LHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             --------------------------------------------
T ss_pred             EECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence            9999998886  5554      3556677888877666554433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=337.45  Aligned_cols=321  Identities=23%  Similarity=0.224  Sum_probs=247.2

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      +.++.+++.++.++. .+  .+++++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            567777777775443 23  257888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCC
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP  167 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~  167 (785)
                      .++ .+|...|.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            887 5777777888888888888888887777888888888888888888887777788888888888888888887666


Q ss_pred             ccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCC
Q 003931          168 SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT  247 (785)
Q Consensus       168 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  247 (785)
                      ..+.++++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.++ .+|...++.++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~  248 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV  248 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcc
Confidence            67788888888888888887777777777788888888877766666666555567777777777776 56655577777


Q ss_pred             CCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcc
Q 003931          248 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF  327 (785)
Q Consensus       248 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  327 (785)
                      +|+.|++++|.+.+..+..|..+++|++|++++|.+++..|.+|..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            77777777777776666667777777777777777777767777777777777777777776656666777777777777


Q ss_pred             cccccC
Q 003931          328 SNNLSG  333 (785)
Q Consensus       328 ~n~l~~  333 (785)
                      +|++..
T Consensus       329 ~N~l~c  334 (477)
T 2id5_A          329 SNPLAC  334 (477)
T ss_dssp             SSCEEC
T ss_pred             CCCccC
Confidence            776653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.9e-36  Score=332.82  Aligned_cols=345  Identities=24%  Similarity=0.348  Sum_probs=179.1

Q ss_pred             CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEE
Q 003931            4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD   83 (785)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   83 (785)
                      +++++.|+++++.++.. + .+..+++|++|++++|.++.+.+  |..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            34555566655555532 2 24555556666666655555443  5555556666665555554433  55555556666


Q ss_pred             CCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931           84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT  163 (785)
Q Consensus        84 Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~  163 (785)
                      +++|.+++ ++.  |.++++|++|++++|.+.+.  ..+..+++|++|+++ |.+.+..  .+.++++|++|++++|.+.
T Consensus       119 L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          119 LFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            65555552 332  35555555555555555532  235555555555554 2333221  2555555555555555554


Q ss_pred             ccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcccc
Q 003931          164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI  243 (785)
Q Consensus       164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  243 (785)
                      +.  ..+..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+   +
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~  261 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---L  261 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---G
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---h
Confidence            32  235555555555555555554333  44455555555555555432  234555555555555555553221   4


Q ss_pred             CCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCE
Q 003931          244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLS  323 (785)
Q Consensus       244 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  323 (785)
                      +.+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            555555555555555554322  4555555555555555554322  4555555555555555554433  445555555


Q ss_pred             EEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccc
Q 003931          324 LQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG  381 (785)
Q Consensus       324 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~  381 (785)
                      |++++|++++.  ..+..+++|+.|++++|++.+..|  +..+++|+.+++++|.+++
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            55555555543  244555555555555555554444  4455555555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-36  Score=329.62  Aligned_cols=348  Identities=22%  Similarity=0.264  Sum_probs=213.6

Q ss_pred             CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      ++++|++|++++|.+++. | .|..+++|++|++++|.++.++   |..+++|++|++++|.+++. +  +..+++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            356666777777666654 2 4666667777777777666653   66666677777777666654 2  6666667777


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      ++++|.+++ +|   +..+++|++|++++|.+++.   .+..+++|++|++++|...+.+  .+..+++|++|++++|.+
T Consensus       112 ~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          112 NCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             ECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence            777776663 43   46666677777776666653   2566666677777666444333  356666666777766666


Q ss_pred             cccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccc
Q 003931          163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL  242 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  242 (785)
                      ++. |  ++.+++|++|++++|.+++.   .++.+++|++|++++|++++ +|  ++.+++|+.|++++|.+++ +|   
T Consensus       183 ~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~---  249 (457)
T 3bz5_A          183 TEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD---  249 (457)
T ss_dssp             CCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---
T ss_pred             cee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC---
Confidence            652 3  56666666666666666643   25666666666666666665 33  5666666666666666663 23   


Q ss_pred             cCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCc--------c
Q 003931          243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP--------T  314 (785)
Q Consensus       243 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--------~  314 (785)
                      ++.+++|+.|++++|              +|+.+++++|.+.+.+|  ++.+++|+.|++++|...+.+|.        .
T Consensus       250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            233444554444433              34445555555554444  34556666666666655444432        2


Q ss_pred             CcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCc
Q 003931          315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL  394 (785)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L  394 (785)
                      +..+++|++|++++|++++.   .++.+++|+.|++++|++.+        ++.|..+.+..|.+.|.     ... ..+
T Consensus       314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~-~~l  376 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQT-ITM  376 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEE-EEC
T ss_pred             hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----cee-eec
Confidence            44556788888888888763   27778888888888888775        23344445666666654     111 145


Q ss_pred             cEEEcccccceecCCcccc
Q 003931          395 INVSFSNNSFSGELPHELC  413 (785)
Q Consensus       395 ~~L~l~~n~l~~~~~~~~~  413 (785)
                      ..+++++|+++|.+|..+.
T Consensus       377 ~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CCBCCBTTBEEEECCTTCB
T ss_pred             CccccccCcEEEEcChhHh
Confidence            5667777777777776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1e-35  Score=328.53  Aligned_cols=348  Identities=28%  Similarity=0.375  Sum_probs=291.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931           26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  105 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~  105 (785)
                      ..+++++.|+++++.+..++  .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++.  |.++++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~  115 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT  115 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             hHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence            45678999999999998865  48889999999999999987765  8999999999999999984 444  68999999


Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA  185 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  185 (785)
                      +|++++|.+++..+  +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..  .+.++++|++|++++|.
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            99999999986543  89999999999999998853 3 58899999999996 4454332  38899999999999999


Q ss_pred             CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCc
Q 003931          186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP  265 (785)
Q Consensus       186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  265 (785)
                      +...  ..+..+++|++|++++|.+++..+  ++.+++|++|++++|.+.+ ++  .+..+++|++|++++|.+.+..+ 
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh-
Confidence            8754  458889999999999999987655  7788999999999999874 43  27889999999999999986544 


Q ss_pred             cCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCC
Q 003931          266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL  345 (785)
Q Consensus       266 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  345 (785)
                       +..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..|  +..+++|
T Consensus       261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  333 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL  333 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence             8889999999999999986544  8889999999999999986544  7889999999999999987665  7889999


Q ss_pred             CEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceec
Q 003931          346 VAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE  407 (785)
Q Consensus       346 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  407 (785)
                      +.|++++|.+.+.  ..+..+++|+.+++++|++++..|  +..+. +|+.+++++|++++.
T Consensus       334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQAWTNA  390 (466)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEECCCEEEECC
T ss_pred             CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEeccCCcccCC
Confidence            9999999998865  467888889999998888887766  45554 788888888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.6e-36  Score=325.91  Aligned_cols=356  Identities=21%  Similarity=0.217  Sum_probs=276.0

Q ss_pred             CCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChh
Q 003931           17 LNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER   96 (785)
Q Consensus        17 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~   96 (785)
                      .....+..++++++|++|++++|.++.++  +|..+++|++|++++|.+++. +  +..+++|++|++++|.+++ ++  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--
Confidence            34445567888999999999999999874  688999999999999999876 3  8899999999999999985 44  


Q ss_pred             hhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCC
Q 003931           97 LFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL  176 (785)
Q Consensus        97 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  176 (785)
                       |.++++|++|++++|.+++. +  +..+++|++|++++|++++.   .++.+++|++|++++|...+.+  .++.+++|
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence             58899999999999999874 3  88999999999999999874   3888999999999999665555  47889999


Q ss_pred             CEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeec
Q 003931          177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN  256 (785)
Q Consensus       177 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  256 (785)
                      ++|++++|.+++ +|  ++.+++|+.|++++|.+++.   .++.+++|++|++++|++++ +|   ++.+++|++|++++
T Consensus       173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred             CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence            999999999986 34  78889999999999999865   47888999999999999985 55   77889999999999


Q ss_pred             CcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCC
Q 003931          257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP  336 (785)
Q Consensus       257 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  336 (785)
                      |.+++..   ++.+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|
T Consensus       243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence            9988753   456788888888765              46778999999888877  5789999999999998877665


Q ss_pred             CC--------CCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecC
Q 003931          337 PE--------IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL  408 (785)
Q Consensus       337 ~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  408 (785)
                      ..        +..+++|++|++++|++++.   .+..+++|+.+++++|++++.         +.+..+++++|.+.|. 
T Consensus       304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l---------~~L~~L~l~~n~l~g~-  370 (457)
T 3bz5_A          304 CQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF---------SSVGKIPALNNNFEAE-  370 (457)
T ss_dssp             CTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC---------TTGGGSSGGGTSEEEE-
T ss_pred             cCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc---------cccccccccCCcEEec-
Confidence            42        34455666666666666653   255666666666666666541         1444455555555544 


Q ss_pred             CccccCCCCCcEEEccCCCCcccCCcc
Q 003931          409 PHELCSGFALEELTVNGNNFTGSLPAC  435 (785)
Q Consensus       409 ~~~~~~~~~L~~L~l~~n~~~~~~~~~  435 (785)
                          +.+..+..+++++|+++|.+|..
T Consensus       371 ----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          371 ----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ----ceeeecCccccccCcEEEEcChh
Confidence                12233445555666665555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=327.79  Aligned_cols=323  Identities=22%  Similarity=0.168  Sum_probs=249.4

Q ss_pred             CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      -+.++.+++.++.++.. +  .+++++|++++|.+++..+..|.++++|++|++++|.+++..| ..|.++++|++|+|+
T Consensus        13 ~~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECC
Confidence            46788888888877643 2  2578889999988888888888888888888888888885434 445888888888888


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI  190 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  190 (785)
                      +|.++...+..|.++++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            88888777777888888888888888888777778888888888888888888777778888888888888888887666


Q ss_pred             CccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCC
Q 003931          191 PPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL  270 (785)
Q Consensus       191 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  270 (785)
                      +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++...+ ...+|++|++++|.+.+..+..+..+
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCc
Confidence            66677788888888888888777777777788888888888777767766633 34477888888877775444567777


Q ss_pred             CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEc
Q 003931          271 TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDV  350 (785)
Q Consensus       271 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  350 (785)
                      ++|++|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.+++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            77777777777777766677777777777777777777777777777777777777777777665556677777777777


Q ss_pred             cCCcCccc
Q 003931          351 NTNQLHGE  358 (785)
Q Consensus       351 ~~n~l~~~  358 (785)
                      ++|.+.+.
T Consensus       328 ~~N~l~c~  335 (477)
T 2id5_A          328 DSNPLACD  335 (477)
T ss_dssp             CSSCEECS
T ss_pred             cCCCccCc
Confidence            77776643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-34  Score=308.15  Aligned_cols=312  Identities=17%  Similarity=0.183  Sum_probs=232.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931           27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~  106 (785)
                      .++++++|++++|.++.++...|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...|.++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            3567777777777777776666777777777777777777666667777777777777777776 344455577777777


Q ss_pred             EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC
Q 003931          107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL  186 (785)
Q Consensus       107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  186 (785)
                      |++++|.++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++.   .++.+++|++|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            77777777755555567777777777777777766666677777777777777777654   245667777888877776


Q ss_pred             cccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931          187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE  266 (785)
Q Consensus       187 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  266 (785)
                      ++.     ...++|+.|++++|.+... |.  ...++|+.|++++|.+++. +  .++.+++|++|++++|.+.+..|..
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A--WLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H--HHcCCCCccEEECCCCcCCCcChhH
Confidence            532     3345778888888877654 22  2346788888888888742 2  3778888899999988888888888


Q ss_pred             CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931          267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV  346 (785)
Q Consensus       267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  346 (785)
                      +..+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~  342 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK  342 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred             ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence            8888999999999998875 4556677889999999999888 5566778888999999999988754 3  67788999


Q ss_pred             EEEccCCcCccc
Q 003931          347 AFDVNTNQLHGE  358 (785)
Q Consensus       347 ~L~l~~n~l~~~  358 (785)
                      .+++++|++.+.
T Consensus       343 ~L~l~~N~~~~~  354 (390)
T 3o6n_A          343 NLTLSHNDWDCN  354 (390)
T ss_dssp             EEECCSSCEEHH
T ss_pred             EEEcCCCCccch
Confidence            999999988764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.1e-33  Score=297.99  Aligned_cols=307  Identities=25%  Similarity=0.359  Sum_probs=227.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL  104 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L  104 (785)
                      +..+++|++|+++++.+..++  +|..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  |.++++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred             chhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcC
Confidence            456777788888887777654  36777788888888877775544  777788888888888776 3442  5778888


Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      ++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            888888887775433  7777888888888876553333 47778888888888887775433  777788888888888


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCC
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP  264 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  264 (785)
                      .+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+.  
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--
Confidence            7764332  6777888888888888775544  777788888888888887 3443  77788888888888887753  


Q ss_pred             ccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCC
Q 003931          265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMAS  344 (785)
Q Consensus       265 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  344 (785)
                      ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..|..++.+++|++|++++|++++..|  +..+++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~  334 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK  334 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred             hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence            4577888888888888888754  457788888888888888887777778888888888888888886655  778888


Q ss_pred             CCEEEccCCcCc
Q 003931          345 LVAFDVNTNQLH  356 (785)
Q Consensus       345 L~~L~l~~n~l~  356 (785)
                      |+.+++++|.++
T Consensus       335 L~~L~l~~N~i~  346 (347)
T 4fmz_A          335 MDSADFANQVIK  346 (347)
T ss_dssp             CSEESSSCC---
T ss_pred             cceeehhhhccc
Confidence            888888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.2e-33  Score=297.93  Aligned_cols=305  Identities=27%  Similarity=0.334  Sum_probs=221.6

Q ss_pred             CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      ++++|++|++++|.++...  .+..+++|++|++++|.++.+.+  |..+++|++|++++|.++..  ..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4567788888888776542  36778888888888887777654  77788888888888877754  357778888888


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      ++++|.+. .++.  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       116 ~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          116 YLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             ECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             ECcCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            88888777 3444  577888888888887555333 347778888888888887775433  67778888888888877


Q ss_pred             cccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccc
Q 003931          163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL  242 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  242 (785)
                      .+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++  .
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~  260 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--A  260 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--G
T ss_pred             ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--h
Confidence            75433  6777788888888887765433  6777788888888888775443  7777888888888887763 33  2


Q ss_pred             cCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCC
Q 003931          243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLL  322 (785)
Q Consensus       243 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  322 (785)
                      +..+++|++|++++|.+.+.  +.+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            67778888888888877754  357777888888888888877777777788888888888888876555  77778888


Q ss_pred             EEEccccccc
Q 003931          323 SLQLFSNNLS  332 (785)
Q Consensus       323 ~L~L~~n~l~  332 (785)
                      +|++++|.++
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            8888887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-33  Score=304.57  Aligned_cols=311  Identities=18%  Similarity=0.156  Sum_probs=213.8

Q ss_pred             CCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEE
Q 003931           52 MPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDL  131 (785)
Q Consensus        52 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  131 (785)
                      ++++++|++++|.++...+..|..+++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            467777777777777666666677777777777777776 3454455777777777777777776666677777777777


Q ss_pred             EcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc
Q 003931          132 RLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS  211 (785)
Q Consensus       132 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  211 (785)
                      ++++|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .++.+++|+.+++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            7777777754444467777777777777777766666677777777777777777643   2455677777777777665


Q ss_pred             cCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhc
Q 003931          212 GGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI  291 (785)
Q Consensus       212 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~  291 (785)
                      +.     ...++|++|++++|.+. .++..   ..++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..|..|
T Consensus       200 ~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          200 TL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             EE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            32     23456777777777776 33332   245677777777777653  456777777777777777777667777


Q ss_pred             cCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcE
Q 003931          292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNK  371 (785)
Q Consensus       292 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  371 (785)
                      ..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+... +  +..+++|+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~  343 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN  343 (390)
T ss_dssp             TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred             cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence            777777777777777764 4555566777777777777776 4555566677777777777777643 2  556677777


Q ss_pred             EEecCcccccc
Q 003931          372 FSVFTNNFSGS  382 (785)
Q Consensus       372 l~l~~n~l~~~  382 (785)
                      +++++|++.+.
T Consensus       344 L~l~~N~~~~~  354 (390)
T 3o6n_A          344 LTLSHNDWDCN  354 (390)
T ss_dssp             EECCSSCEEHH
T ss_pred             EEcCCCCccch
Confidence            77777776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-33  Score=319.36  Aligned_cols=313  Identities=17%  Similarity=0.180  Sum_probs=262.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931           27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~  106 (785)
                      .+.+++.+++++|.+..+++..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++ +|...|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence            45788888888888888888888888888888888888888888888888889999998888884 56666788888999


Q ss_pred             EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC
Q 003931          107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL  186 (785)
Q Consensus       107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  186 (785)
                      |+|++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++.   .++.+++|++|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99998888877666778888899999999988888888888889999999999988864   255678889999998887


Q ss_pred             cccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931          187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE  266 (785)
Q Consensus       187 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  266 (785)
                      ++     +...++|+.|++++|.++...+..   .++|+.|++++|.+++.   ..++.+++|+.|++++|.+.+..|..
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHH
Confidence            64     344568899999999887543322   36899999999999852   33888999999999999999998999


Q ss_pred             CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931          267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV  346 (785)
Q Consensus       267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  346 (785)
                      |+.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+++. +  +..+++|+
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~  348 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK  348 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCC
Confidence            9999999999999999986 5666788999999999999998 5777888999999999999999854 2  67889999


Q ss_pred             EEEccCCcCcccc
Q 003931          347 AFDVNTNQLHGEL  359 (785)
Q Consensus       347 ~L~l~~n~l~~~~  359 (785)
                      .|++++|.+.+..
T Consensus       349 ~L~l~~N~~~~~~  361 (597)
T 3oja_B          349 NLTLSHNDWDCNS  361 (597)
T ss_dssp             EEECCSSCEEHHH
T ss_pred             EEEeeCCCCCChh
Confidence            9999999988653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.5e-33  Score=316.02  Aligned_cols=313  Identities=18%  Similarity=0.164  Sum_probs=277.7

Q ss_pred             CCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcE
Q 003931           51 SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLID  130 (785)
Q Consensus        51 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  130 (785)
                      .+.+++.+++++|.+..+.+..|..+++|++|++++|.+++ ++...|..+++|++|+|++|.+++..+..|.++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            35789999999999998888889999999999999999985 55556799999999999999999988889999999999


Q ss_pred             EEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccc
Q 003931          131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQL  210 (785)
Q Consensus       131 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  210 (785)
                      |++++|.+++..+..|+++++|++|++++|.+.+..|..|+.+++|++|++++|.+++.   .++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99999999977776789999999999999999998888999999999999999999865   356788999999999988


Q ss_pred             ccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChh
Q 003931          211 SGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE  290 (785)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  290 (785)
                      ++     +...++|+.|++++|.+. .++..   ..++|+.|++++|.+.+  +..++.+++|++|++++|.+++..|..
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----ccCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            75     344578999999999997 44433   23689999999999986  467899999999999999999999999


Q ss_pred             ccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCc
Q 003931          291 IEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLN  370 (785)
Q Consensus       291 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  370 (785)
                      |+.+++|+.|+|++|.+++ +|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.+..   +..+++|+
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~  348 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK  348 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence            9999999999999999996 5777788999999999999998 67778889999999999999998652   66788999


Q ss_pred             EEEecCccccccC
Q 003931          371 KFSVFTNNFSGSI  383 (785)
Q Consensus       371 ~l~l~~n~l~~~~  383 (785)
                      .+++++|++.+..
T Consensus       349 ~L~l~~N~~~~~~  361 (597)
T 3oja_B          349 NLTLSHNDWDCNS  361 (597)
T ss_dssp             EEECCSSCEEHHH
T ss_pred             EEEeeCCCCCChh
Confidence            9999999998653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.2e-31  Score=278.80  Aligned_cols=289  Identities=25%  Similarity=0.270  Sum_probs=185.5

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL  109 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L  109 (785)
                      +++.++++++.++.++.. +  .+++++|++++|.+++..+..|..+++|++|++++|.+++..|. .|.++++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEEC
Confidence            566666666666555422 2  14566666666666655555666666666666666666533233 3466666666666


Q ss_pred             CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc--cCCccccCCCCCCEEEcccCcCc
Q 003931          110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG--QIPSSLGQLKNLQHLDLRMNALN  187 (785)
Q Consensus       110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~  187 (785)
                      ++|.++. .|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++
T Consensus       108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            6666653 233222  466666666666665555556666666666666666642  45556666677777777777666


Q ss_pred             ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccC
Q 003931          188 YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI  267 (785)
Q Consensus       188 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  267 (785)
                      . +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++. +...++.+++|++|++++|.+. .+|.++
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            3 343332  6677777777777766667777777777777777777743 3333677777888888888777 567777


Q ss_pred             cCCCCCcEEECcCccccccCChhccC------CCCCCEEECcCCcccc--cCCccCcCCCCCCEEEccccc
Q 003931          268 GLLTKLQYLFLYRNNFSGPIPSEIEK------LTSLENLDLSGNQLSG--TIPPTLWNLTNLLSLQLFSNN  330 (785)
Q Consensus       268 ~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~  330 (785)
                      ..+++|++|++++|.+++..+..|..      .+.++.+++++|++..  ..|..|..+++++.+++++|+
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            77888888888888887666666643      3678888998888763  456778888889999988874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.7e-31  Score=278.26  Aligned_cols=287  Identities=21%  Similarity=0.231  Sum_probs=173.1

Q ss_pred             CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEc
Q 003931           78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL  157 (785)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  157 (785)
                      +++.++++++.++ .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4555555555555 445433   245555666666655555555556666666666666665555555666666666666


Q ss_pred             ccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc--CCchhccCCCCCCEEEccCCCCc
Q 003931          158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG--GLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+..+.++++|++|++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            666555 2333332  456666666666665555555666666666666666542  44556666777777777777766


Q ss_pred             cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccC
Q 003931          236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL  315 (785)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  315 (785)
                       .+|...   .++|++|++++|.+.+..|..+..+++|++|++++|.+++..+.++..+++|++|++++|+++ .+|..+
T Consensus       185 -~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          185 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             -SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             -cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence             455442   256777777777777766677777777777777777777666667777777777777777777 566667


Q ss_pred             cCCCCCCEEEcccccccCCCCCCCCC------CCCCCEEEccCCcCcc--ccCccccccCCCcEEEecC
Q 003931          316 WNLTNLLSLQLFSNNLSGTIPPEIGS------MASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFT  376 (785)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~  376 (785)
                      ..+++|++|++++|++++..+..+..      .+.++.+++++|.+..  ..|..+..+..++.+++++
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence            77777777777777777655554432      2455666666665542  2233344444444443333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2e-31  Score=280.52  Aligned_cols=288  Identities=25%  Similarity=0.308  Sum_probs=223.6

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL  109 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L  109 (785)
                      +++.++++++.++.++...   .++|++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEEC
Confidence            6888888888887766433   2578888888888887777788888888888888888874 44444588888888888


Q ss_pred             CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc--ccCCccccCCCCCCEEEcccCcCc
Q 003931          110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT--GQIPSSLGQLKNLQHLDLRMNALN  187 (785)
Q Consensus       110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~  187 (785)
                      ++|.++. +|..+.  ++|++|++++|++++..+..|.++++|++|++++|.++  +..+..+..+ +|++|++++|.++
T Consensus       110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            8888874 343333  68888888888888766667888888888888888885  3666777777 8888888888887


Q ss_pred             ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccC
Q 003931          188 YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI  267 (785)
Q Consensus       188 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  267 (785)
                      + +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++ +++..++.+++|++|++++|.+. .+|..+
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            5 454443  688888888888888777888888888888998888884 44444788888999999998888 677778


Q ss_pred             cCCCCCcEEECcCccccccCChhccC------CCCCCEEECcCCccc--ccCCccCcCCCCCCEEEccccc
Q 003931          268 GLLTKLQYLFLYRNNFSGPIPSEIEK------LTSLENLDLSGNQLS--GTIPPTLWNLTNLLSLQLFSNN  330 (785)
Q Consensus       268 ~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~  330 (785)
                      ..+++|++|++++|.+++..+..|..      ...|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88899999999999988776666654      367889999999887  5677888899999999998875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=4.3e-31  Score=277.91  Aligned_cols=286  Identities=21%  Similarity=0.220  Sum_probs=146.2

Q ss_pred             ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF  158 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  158 (785)
                      ++.++++++.++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|++++..|..|+++++|++|+++
T Consensus        35 l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             TTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            444444444443 334322   1344444444444444444444444444444444444444444444444444444444


Q ss_pred             cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc--CCchhccCCCCCCEEEccCCCCcc
Q 003931          159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG--GLPLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      +|.++ .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.++ 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-  185 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence            44444 2222222  344445555444444333344444555555555554432  334444444 5555555555555 


Q ss_pred             ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCc
Q 003931          237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW  316 (785)
Q Consensus       237 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  316 (785)
                      .+|....   ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.+|..+++|+.|++++|+++ .+|..+.
T Consensus       186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            3443321   45666666666666555556666666666666666666655556666666666666666666 5555666


Q ss_pred             CCCCCCEEEcccccccCCCCCCCCC------CCCCCEEEccCCcCc--cccCccccccCCCcEEEecCc
Q 003931          317 NLTNLLSLQLFSNNLSGTIPPEIGS------MASLVAFDVNTNQLH--GELPENISRLVKLNKFSVFTN  377 (785)
Q Consensus       317 ~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~n  377 (785)
                      .+++|++|++++|++++..+..+..      ...|+.+++++|.+.  +..|..+..+++|+.+++++|
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            6666666666666666554444433      245566666666654  334445555555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.6e-32  Score=282.87  Aligned_cols=247  Identities=28%  Similarity=0.435  Sum_probs=108.2

Q ss_pred             CcEEECCCCCCcc--cCCccccCCCCCcEEEcCC-CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          104 LEYLNLTENQFQG--KLSPNVSKLSNLIDLRLAT-NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       104 L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      +++|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+.+.+|..+.++++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            3344444444433  3333444444444444442 334433444444444444444444444444444444444444444


Q ss_pred             cccCcCcccCCccccCCcccCeeeccccccccCCchhccCCC-CCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931          181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLS-KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF  259 (785)
Q Consensus       181 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  259 (785)
                      +++|.+++.+|..++.+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|.. ++.++ |++|++++|.+
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNML  209 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEE
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCcc
Confidence            444444444444444444444444444444444444444443 4444444444444333333 33333 44444444444


Q ss_pred             cccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC
Q 003931          260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI  339 (785)
Q Consensus       260 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  339 (785)
                      .+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. 
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            444444444444444444444444433332 444444444444444444444444444444444444444444444433 


Q ss_pred             CCCCCCCEEEccCCc
Q 003931          340 GSMASLVAFDVNTNQ  354 (785)
Q Consensus       340 ~~l~~L~~L~l~~n~  354 (785)
                      +.+++|+.+++++|.
T Consensus       288 ~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccccccChHHhcCCC
Confidence            444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.3e-31  Score=278.58  Aligned_cols=248  Identities=27%  Similarity=0.424  Sum_probs=159.5

Q ss_pred             CCCcEEEcCCCcccc--cCCcCCCCCCCCCEEEccc-CcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCe
Q 003931          126 SNLIDLRLATNKFSG--PIPGDIGSMSNLQLVELFN-NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY  202 (785)
Q Consensus       126 ~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  202 (785)
                      .+++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467777777777776  6677777777777777774 6777667777777777777777777777667777777777777


Q ss_pred             eeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCC-CCCEEEeecCcCcccCCccCcCCCCCcEEECcCc
Q 003931          203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT-ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN  281 (785)
Q Consensus       203 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  281 (785)
                      |++++|.+++.+|..+..+++|++|++++|.+++.+|.. ++.++ +|++|++++|.+.+.+|..++.++ |++|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            777777777666666666677777777777666666655 45554 666666666666666666666655 666666666


Q ss_pred             cccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCc
Q 003931          282 NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE  361 (785)
Q Consensus       282 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  361 (785)
                      .+++..|..|..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            66666666666666666666666666644443 55556666666666666655555555556666666665555555554


Q ss_pred             cccccCCCcEEEecCc
Q 003931          362 NISRLVKLNKFSVFTN  377 (785)
Q Consensus       362 ~~~~l~~L~~l~l~~n  377 (785)
                      . ..+++|+.+++.+|
T Consensus       287 ~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANN  301 (313)
T ss_dssp             S-TTGGGSCGGGTCSS
T ss_pred             C-ccccccChHHhcCC
Confidence            3 33444444434333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.4e-35  Score=322.75  Aligned_cols=355  Identities=19%  Similarity=0.155  Sum_probs=161.3

Q ss_pred             CCCcEEEccCCCCCCCcccc-ccCCCCCCEEeCCCCCCCCCC----ccccCCCCCCcEEEccCCCCcccCCccC-CCCC-
Q 003931            5 SELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLETPD----WSKFSSMPSLTHLGLYLNELTLEFPSFI-LTCR-   77 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~----~~~f~~l~~L~~L~L~~n~i~~~~~~~~-~~l~-   77 (785)
                      +++++|++++|+++...... +..+++|++|++++|.++...    +.+|..+++|++|++++|.++...+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45677777777766443332 566667777777777665332    2334555666666666665554322221 1222 


Q ss_pred             ---CccEEECCCCCCcc----cCChhhhcCCCCCcEEECCCCCCcccCCccc-----cCCCCCcEEEcCCCcccccCCcC
Q 003931           78 ---NLTYLDLSLNKLSG----LIPERLFTNLGKLEYLNLTENQFQGKLSPNV-----SKLSNLIDLRLATNKFSGPIPGD  145 (785)
Q Consensus        78 ---~L~~L~Ls~n~i~~----~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~~~~  145 (785)
                         +|++|++++|.++.    .++. .|..+++|++|++++|.+++..+..+     ...++|++|++++|.+++.... 
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-
Confidence               45555555555542    1122 23455555555555555543222221     1133455555555544432100 


Q ss_pred             CCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCcccc-----CCcccCeeeccccccccC----Cch
Q 003931          146 IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG-----LCTNLSYLALAVNQLSGG----LPL  216 (785)
Q Consensus       146 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~i~~~----~~~  216 (785)
                                         .++..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++.
T Consensus       161 -------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          161 -------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             -------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             -------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence                               1122333344444444444444332222221     123445555555544432    233


Q ss_pred             hccCCCCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCccc----CCccCcCCCCCcEEECcCccccccCC
Q 003931          217 SLSNLSKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFMGN----IPPEIGLLTKLQYLFLYRNNFSGPIP  288 (785)
Q Consensus       217 ~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p  288 (785)
                      .+..+++|++|++++|.+.+.    +....+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            444445555555555554421    1112122344555555555554432    23334445555555555555543322


Q ss_pred             hhccC-----CCCCCEEECcCCccccc----CCccCcCCCCCCEEEcccccccCCCCCCCCC-----CCCCCEEEccCCc
Q 003931          289 SEIEK-----LTSLENLDLSGNQLSGT----IPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS-----MASLVAFDVNTNQ  354 (785)
Q Consensus       289 ~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~  354 (785)
                      ..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|+.|++++|.
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            22221     13555555555555433    2333444455555555555544322222211     3455555555555


Q ss_pred             Ccc----ccCccccccCCCcEEEecCcccc
Q 003931          355 LHG----ELPENISRLVKLNKFSVFTNNFS  380 (785)
Q Consensus       355 l~~----~~~~~~~~l~~L~~l~l~~n~l~  380 (785)
                      +++    .+|..+..+++|+++++++|+++
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            543    34444444555555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.8e-35  Score=322.55  Aligned_cols=330  Identities=22%  Similarity=0.159  Sum_probs=234.4

Q ss_pred             CCCCCcEEEccCCCCCCC----ccccccCCCCCCEEeCCCCCCCCCCcccc-CCCC----CCcEEEccCCCCcc----cC
Q 003931            3 DLSELQYLSVYDNNLNGA----IPFQLSSLRKVRYLDLGGNFLETPDWSKF-SSMP----SLTHLGLYLNELTL----EF   69 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~f-~~l~----~L~~L~L~~n~i~~----~~   69 (785)
                      .+++|++|++++|.++..    ++..+..+++|++|++++|.+.......+ ..++    +|++|++++|.++.    ..
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            478999999999998843    46678889999999999999876444333 3344    79999999999985    45


Q ss_pred             CccCCCCCCccEEECCCCCCcccCChh----hhcCCCCCcEEECCCCCCcccC----CccccCCCCCcEEEcCCCccccc
Q 003931           70 PSFILTCRNLTYLDLSLNKLSGLIPER----LFTNLGKLEYLNLTENQFQGKL----SPNVSKLSNLIDLRLATNKFSGP  141 (785)
Q Consensus        70 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~  141 (785)
                      +..+..+++|++|++++|.+++..+..    ++...++|++|++++|.+++..    +..+..+++|++|++++|.+.+.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            888999999999999999987543332    2334678999999999998644    55667789999999999998765


Q ss_pred             CCcCCC-----CCCCCCEEEcccCccccc----CCccccCCCCCCEEEcccCcCcccC-----CccccCCcccCeeeccc
Q 003931          142 IPGDIG-----SMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMNALNYTI-----PPELGLCTNLSYLALAV  207 (785)
Q Consensus       142 ~~~~l~-----~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~  207 (785)
                      .+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.++...     +..+..+++|++|++++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence            443333     356899999999988753    4666778889999999998876532     22233577888888888


Q ss_pred             cccccC----CchhccCCCCCCEEEccCCCCccccCcc----ccCCCCCCCEEEeecCcCccc----CCccCcCCCCCcE
Q 003931          208 NQLSGG----LPLSLSNLSKLNDLGLSDNFLSGEISAN----LIGNWTELESLQIQNNSFMGN----IPPEIGLLTKLQY  275 (785)
Q Consensus       208 n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~  275 (785)
                      |.+++.    ++..+..+++|++|++++|.+.+..+..    .....++|++|++++|.+++.    ++..+..+++|++
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  345 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE  345 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence            887753    4566667788888888888776432221    112335677777777776654    3444555667777


Q ss_pred             EECcCccccccCChhccC-----CCCCCEEECcCCcccc----cCCccCcCCCCCCEEEccccccc
Q 003931          276 LFLYRNNFSGPIPSEIEK-----LTSLENLDLSGNQLSG----TIPPTLWNLTNLLSLQLFSNNLS  332 (785)
Q Consensus       276 L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~  332 (785)
                      |++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|+++
T Consensus       346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            777777665544433332     4566677777666664    45555566666666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=7.3e-29  Score=263.29  Aligned_cols=284  Identities=23%  Similarity=0.202  Sum_probs=198.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931           27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~  106 (785)
                      .|+.....+++++.++.++...+   ++|++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCE
Confidence            45566667888888887764332   478888888888887777778888888888888888874 44455688888888


Q ss_pred             EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccC-cccccCCccccCCCCCCEEEcccC
Q 003931          107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNN-SFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      |++++|.+++..+..|.++++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..++++++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            8888888886666668888888888888888885444 46788888888888888 466666778888889999999999


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccc--cCCCCCCCEEEeecCcCccc
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL--IGNWTELESLQIQNNSFMGN  262 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~  262 (785)
                      .+++..|..++.+++|++|++++|.++...+..+..+++|+.|++++|.+++..+...  ......++.++++++.+.+ 
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-  263 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-  263 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-
Confidence            8888888888888999999999988865444445567888888888888774322210  1122334444444443332 


Q ss_pred             CCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCC
Q 003931          263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT  334 (785)
Q Consensus       263 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (785)
                                        +.+. .+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+.
T Consensus       264 ------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          264 ------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             ------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                              1111 3455666667777777777776633222346667777777777766643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=262.95  Aligned_cols=283  Identities=20%  Similarity=0.194  Sum_probs=180.3

Q ss_pred             CCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcE
Q 003931           51 SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLID  130 (785)
Q Consensus        51 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  130 (785)
                      .|+...+.+.+++.++.+ |..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            345555566666666643 33332  36677777777766 345544566777777777777666666666666667777


Q ss_pred             EEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCC-ccccCCCCCCEEEcccC-cCcccCCccccCCcccCeeecccc
Q 003931          131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP-SSLGQLKNLQHLDLRMN-ALNYTIPPELGLCTNLSYLALAVN  208 (785)
Q Consensus       131 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  208 (785)
                      |++++|++++..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..++.+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            7777776665444446666666677766666664333 35666666666666666 355444555666666666666666


Q ss_pred             ccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCC
Q 003931          209 QLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP  288 (785)
Q Consensus       209 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  288 (785)
                      .+++..|..+..+++|++|++++|.+. .++..+++.+++|++|++++|.+.+..+..+..                   
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------  244 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------------------  244 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred             CcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc-------------------
Confidence            666555666666666666666666654 444443444555566666555555432221110                   


Q ss_pred             hhccCCCCCCEEECcCCcccc----cCCccCcCCCCCCEEEcccccccCCCCCC-CCCCCCCCEEEccCCcCccccC
Q 003931          289 SEIEKLTSLENLDLSGNQLSG----TIPPTLWNLTNLLSLQLFSNNLSGTIPPE-IGSMASLVAFDVNTNQLHGELP  360 (785)
Q Consensus       289 ~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~  360 (785)
                        ......++.++++++.+++    .+|..+..+++|++|++++|+++ .+|.. ++.+++|+++++++|.+.+..|
T Consensus       245 --~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          245 --GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence              1234566777777777665    36778899999999999999999 55555 6899999999999999988765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.1e-28  Score=254.32  Aligned_cols=281  Identities=21%  Similarity=0.185  Sum_probs=163.5

Q ss_pred             EEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCccc--CChhhhcCCCCCcEEECC
Q 003931           33 YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        33 ~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~f~~l~~L~~L~Ls  110 (785)
                      .++++++.++.++...+   ++|++|++++|.++.+.+..|.++++|++|++++|.++..  .+..+ ..+++|++|+++
T Consensus        11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECC
T ss_pred             EEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECC
Confidence            34444444444432211   3455555555555444444445555555555555554411  12222 345566666666


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc-
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-  188 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-  188 (785)
                      +|.+.. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ 
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            665552 34445556666666666666654433 355666666666666666665556666666666666666666654 


Q ss_pred             cCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCc
Q 003931          189 TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG  268 (785)
Q Consensus       189 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  268 (785)
                      ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..|..+.
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence            45666666666777777777666666666677777777777777776 34443467777777777777777777777777


Q ss_pred             CCC-CCcEEECcCccccccCC--hhccCCCCCCEEECcCCcccccCCccCcCCC
Q 003931          269 LLT-KLQYLFLYRNNFSGPIP--SEIEKLTSLENLDLSGNQLSGTIPPTLWNLT  319 (785)
Q Consensus       269 ~l~-~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  319 (785)
                      .++ +|++|++++|.+++..+  .....+...+.+....+.+....|..+.+.+
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            774 78888888887765321  1112223344455666666666676665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5.3e-28  Score=251.36  Aligned_cols=229  Identities=24%  Similarity=0.333  Sum_probs=112.6

Q ss_pred             CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccC--CccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931           29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEF--PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~  106 (785)
                      ++|++|++++|.++.++...|.++++|++|++++|.++...  +..+..+++|++|++++|.+. .+|.. |..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEE-EETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhh-cCCCCCCCE
Confidence            34555555555555544444555555555555555544221  333334455555555555554 23333 244555555


Q ss_pred             EECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc-cCCccccCCCCCCEEEcccC
Q 003931          107 LNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       107 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n  184 (785)
                      |++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            5555555543333 344555555555555555554444445555555555555555543 34444555555555555555


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC-CCCCEEEeecCcCc
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW-TELESLQIQNNSFM  260 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~  260 (785)
                      .+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.+.
T Consensus       186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEE
T ss_pred             CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCee
Confidence            555444445555555555555555555444444555555555555555554433333 3444 24555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.1e-27  Score=257.81  Aligned_cols=249  Identities=24%  Similarity=0.238  Sum_probs=140.1

Q ss_pred             ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF  158 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  158 (785)
                      .+.++.++..++ .+|..+   .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            345666666665 456533   2456666666666666556666666666666666666665555556666666666666


Q ss_pred             cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931          159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI  238 (785)
Q Consensus       159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  238 (785)
                      +|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++                        |...+.+
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE------------------------LKKLEYI  187 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC------------------------CTTCCEE
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC------------------------CCCcccc
Confidence            6666555445555555666666665555544444444445555555444                        3222234


Q ss_pred             CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931          239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL  318 (785)
Q Consensus       239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  318 (785)
                      +...+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++..|..|.++++|+.|++++|++++..|..|..+
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence            433344455555555555554432 2 34555555556666665555555555566666666666666655555556666


Q ss_pred             CCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc
Q 003931          319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG  357 (785)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  357 (785)
                      ++|++|++++|++++..+..+..+++|+.+++++|.+..
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            666666666666655555555556666666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.8e-27  Score=257.02  Aligned_cols=248  Identities=23%  Similarity=0.230  Sum_probs=132.1

Q ss_pred             ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF  158 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  158 (785)
                      .+.++.++..++ .+|..+   .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            445666666665 556543   2456666666666665555556666666666666666655555555555556666665


Q ss_pred             cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931          159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI  238 (785)
Q Consensus       159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  238 (785)
                      +|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++                        |...+.+
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE------------------------LKRLSYI  176 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC------------------------CTTCCEE
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC------------------------CCCccee
Confidence            5555544444555555555555555555544444444444444444444                        2222233


Q ss_pred             CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931          239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL  318 (785)
Q Consensus       239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  318 (785)
                      +...+.++++|++|++++|.++. +| .+..+++|++|+|++|.+++..|..|.++++|+.|++++|++++..+..|..+
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence            33334444444444444444442 22 24445555555555555555555555555555555555555555555555555


Q ss_pred             CCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCc
Q 003931          319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH  356 (785)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  356 (785)
                      ++|++|+|++|++++..+..+..+++|+.+++++|.+.
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            55555555555555444444555555555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.9e-27  Score=248.52  Aligned_cols=225  Identities=24%  Similarity=0.340  Sum_probs=131.7

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          101 LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       101 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      ..++++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            456667777776666 45555666667777777777666 56666667777777777777666 5566677777777777


Q ss_pred             cccCcCcccCCccccC---------CcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCE
Q 003931          181 LRMNALNYTIPPELGL---------CTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELES  251 (785)
Q Consensus       181 l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  251 (785)
                      +++|.+.+.+|..++.         +++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|.. ++.+++|++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEE  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCE
Confidence            7776666666655443         555555555555555 44445555555555555555555 23333 445555555


Q ss_pred             EEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccc
Q 003931          252 LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNL  331 (785)
Q Consensus       252 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (785)
                      |++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|..++.+++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4.9e-30  Score=293.13  Aligned_cols=408  Identities=14%  Similarity=0.097  Sum_probs=185.4

Q ss_pred             cCCCCCCCCCEEEcccCccc---ccCCcccc------------CCCCCCEEEcccCcCcccCCccccC-Cc-ccCeeecc
Q 003931          144 GDIGSMSNLQLVELFNNSFT---GQIPSSLG------------QLKNLQHLDLRMNALNYTIPPELGL-CT-NLSYLALA  206 (785)
Q Consensus       144 ~~l~~l~~L~~L~L~~n~~~---~~~~~~l~------------~l~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L~l~  206 (785)
                      ..+..+++|+.|+++++...   +.+|..++            .+++|++|++++|.+++..+..+.. ++ +|++|+++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence            33456677888888775431   22332222            4556666666666555443333333 22 25555555


Q ss_pred             ccc-ccc-CCchhccCCCCCCEEEccCCCCccccCc---cccCCCCCCCEEEeecCcCcc----cCCccCcCCCCCcEEE
Q 003931          207 VNQ-LSG-GLPLSLSNLSKLNDLGLSDNFLSGEISA---NLIGNWTELESLQIQNNSFMG----NIPPEIGLLTKLQYLF  277 (785)
Q Consensus       207 ~n~-i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~  277 (785)
                      +|. ++. .++....++++|++|++++|.+++.-..   ..+..+++|++|++++|.+.+    .++..+..+++|++|+
T Consensus       147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence            554 111 1111223455555555555554322110   113344455555555554431    1222233444455555


Q ss_pred             CcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc
Q 003931          278 LYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG  357 (785)
Q Consensus       278 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  357 (785)
                      +++|.+.+ +|..+..+++|++|+++.+......                     +..+..+..+++|+.++++.+. .+
T Consensus       227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~~~-~~  283 (592)
T 3ogk_B          227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---------------------PEKYMNLVFPRKLCRLGLSYMG-PN  283 (592)
T ss_dssp             CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---------------------TTSSSCCCCCTTCCEEEETTCC-TT
T ss_pred             ccCccHHH-HHHHHhhhhHHHhhcccccccccch---------------------HHHHHHhhccccccccCccccc-hh
Confidence            55444443 3344444444554444432111000                     1122233444445555444431 12


Q ss_pred             ccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccC-----------C
Q 003931          358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNG-----------N  426 (785)
Q Consensus       358 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n  426 (785)
                      .+|..+..+++|++|++++|.+++.....+....++|+.|+++++-..+.++.....+++|++|++++           +
T Consensus       284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~  363 (592)
T 3ogk_B          284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG  363 (592)
T ss_dssp             TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred             HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence            33444444455555555554443322211111223555555552211112222223445566666662           2


Q ss_pred             CCccc-CCccccCCCCCcEEEcccCccccccCcccCC-CCCCcEEEcc----CCeeeee-----cccchhcccccceecc
Q 003931          427 NFTGS-LPACLRNCSNLNRVRFDGNQFTGNITKAFGV-HPRLDFIRLS----GNQFVGE-----ISPDWGECRNLSNLQL  495 (785)
Q Consensus       427 ~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~L  495 (785)
                      .+++. ++.....+++|++|+++.|.+++.....++. +++|+.|+++    .|.+++.     ++..+..+++|+.|++
T Consensus       364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence            33322 1122344666666666666665554444443 5666666664    4444432     2223455666666666


Q ss_pred             ccce--eeeccCcchh-ccccCCeeecccCccccC-CCcccccCCCCCeecccCCcccCc-CCcccccCCCCCeEecCCC
Q 003931          496 DRNR--ISGGIPAELG-NLTRLGVLSLDSNELTGK-IPTDLGKLVKLFNLNLSNNHLTGE-IPKSISNLTELAYLDLSNN  570 (785)
Q Consensus       496 ~~n~--i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n  570 (785)
                      ++|.  +++..+..+. .+++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus       444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence            5332  4433333332 255666666666665542 233345556666666666665433 2233345566666666666


Q ss_pred             cCcc
Q 003931          571 KLTG  574 (785)
Q Consensus       571 ~l~~  574 (785)
                      +++.
T Consensus       524 ~it~  527 (592)
T 3ogk_B          524 RASM  527 (592)
T ss_dssp             BCCT
T ss_pred             cCCH
Confidence            6554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.2e-27  Score=245.75  Aligned_cols=225  Identities=24%  Similarity=0.155  Sum_probs=150.2

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      ++++.+++.++.++. .  -.++|++|++++|.++.+.+.+|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~-~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-G--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCT-T--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCc-C--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            466777766664432 2  2457777777777777777667777777777777777777666777777777777777777


Q ss_pred             C-CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931           88 K-LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI  166 (785)
Q Consensus        88 ~-i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  166 (785)
                      . +. .++...|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+++..
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            5 55 444444567777777777777777666666777777777777777776555555666777777777777666555


Q ss_pred             CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc
Q 003931          167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            5556666667777776666666666666666666666666666665555556666666666666666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.1e-27  Score=246.22  Aligned_cols=225  Identities=21%  Similarity=0.227  Sum_probs=144.2

Q ss_pred             cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc
Q 003931           80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN  159 (785)
Q Consensus        80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  159 (785)
                      ++++.+++.++ .+|..+   .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45566666655 455432   34666666666666655555666666666666666666655566666666666666666


Q ss_pred             Cc-ccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931          160 NS-FTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI  238 (785)
Q Consensus       160 n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  238 (785)
                      |. +....|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence            65 55554566666666666666666666555666666666666666666666555555666666677777766666 44


Q ss_pred             CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccc
Q 003931          239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG  309 (785)
Q Consensus       239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  309 (785)
                      +...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            44446666667777777776666666666667777777777777766555556667777777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-26  Score=254.23  Aligned_cols=248  Identities=22%  Similarity=0.248  Sum_probs=211.4

Q ss_pred             CcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccc
Q 003931          128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV  207 (785)
Q Consensus       128 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  207 (785)
                      ...++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456666666666 3454443  5778888888888877777788888888888888888877777888888888888888


Q ss_pred             cccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecC-cCcccCCccCcCCCCCcEEECcCcccccc
Q 003931          208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN-SFMGNIPPEIGLLTKLQYLFLYRNNFSGP  286 (785)
Q Consensus       208 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  286 (785)
                      |.+++..+..|..+++|++|++++|.++ .++...+.++++|++|++++| .+....+..|..+++|++|++++|.+++.
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            8888777777888999999999999998 666666999999999999995 55544455799999999999999999854


Q ss_pred             CChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccccc
Q 003931          287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL  366 (785)
Q Consensus       287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  366 (785)
                       | .+..+++|+.|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence             4 48899999999999999999999999999999999999999999889999999999999999999998888888999


Q ss_pred             CCCcEEEecCccccc
Q 003931          367 VKLNKFSVFTNNFSG  381 (785)
Q Consensus       367 ~~L~~l~l~~n~l~~  381 (785)
                      ++|+.+++++|.+..
T Consensus       290 ~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          290 RYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEccCCCcCC
Confidence            999999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.3e-30  Score=295.90  Aligned_cols=434  Identities=15%  Similarity=0.131  Sum_probs=240.1

Q ss_pred             CccccccCCCCCCEEeCCCCCCC---CC---Ccccc---------CCCCCCcEEEccCCCCcccCCccCCC-CC-CccEE
Q 003931           20 AIPFQLSSLRKVRYLDLGGNFLE---TP---DWSKF---------SSMPSLTHLGLYLNELTLEFPSFILT-CR-NLTYL   82 (785)
Q Consensus        20 ~~~~~~~~l~~L~~L~L~~n~i~---~~---~~~~f---------~~l~~L~~L~L~~n~i~~~~~~~~~~-l~-~L~~L   82 (785)
                      .++..+.++++|++|+++++...   ..   ..+.+         ..+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            34445567778888888765320   00   11111         15677778888777766555554444 23 37777


Q ss_pred             ECCCCC-CcccCChhhhcCCCCCcEEECCCCCCccc----CCccccCCCCCcEEEcCCCcccc----cCCcCCCCCCCCC
Q 003931           83 DLSLNK-LSGLIPERLFTNLGKLEYLNLTENQFQGK----LSPNVSKLSNLIDLRLATNKFSG----PIPGDIGSMSNLQ  153 (785)
Q Consensus        83 ~Ls~n~-i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~  153 (785)
                      ++++|. +.......+..++++|++|+|++|.+++.    ++..+..+++|++|++++|.+++    .++..+.++++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            777775 21111112234677777777777776544    22334566777777777777752    2233345677777


Q ss_pred             EEEcccCcccccCCccccCCCCCCEEEcccCcCc---ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEcc
Q 003931          154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN---YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS  230 (785)
Q Consensus       154 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  230 (785)
                      +|++++|.+.+ +|..+..+++|++|+++.....   ...+..+..+++|+.++++.+.. ..+|..+..+++|++|+++
T Consensus       224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls  301 (592)
T 3ogk_B          224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLL  301 (592)
T ss_dssp             EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEET
T ss_pred             EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecC
Confidence            77777777664 4566777777777777653322   22334455666677776665432 2455556666677777777


Q ss_pred             CCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcC-----------cccccc-CChhccCCCCCC
Q 003931          231 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR-----------NNFSGP-IPSEIEKLTSLE  298 (785)
Q Consensus       231 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~p~~~~~l~~L~  298 (785)
                      +|.+++......+..+++|++|+++++-..+.++..+..+++|++|++++           |.+++. ++..+..+++|+
T Consensus       302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            76655443333356666677776663322222232334556666666662           344332 112233466666


Q ss_pred             EEECcCCcccccCCccCcC-CCCCCEEEcc----cccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEE
Q 003931          299 NLDLSGNQLSGTIPPTLWN-LTNLLSLQLF----SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFS  373 (785)
Q Consensus       299 ~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  373 (785)
                      +|+++.|.+++..+..++. +++|++|+++    .|.+++. |..                  ..++..+..+++|+.|+
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~------------------~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD------------------NGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH------------------HHHHHHHHHCTTCCEEE
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH------------------HHHHHHHHhCCCCCEEE
Confidence            6666666666554444443 5666666664    3333321 000                  01122233445555555


Q ss_pred             ecCc--cccccCCcccccCCCCccEEEcccccceec-CCccccCCCCCcEEEccCCCCccc-CCccccCCCCCcEEEccc
Q 003931          374 VFTN--NFSGSIPGDFGKFSPSLINVSFSNNSFSGE-LPHELCSGFALEELTVNGNNFTGS-LPACLRNCSNLNRVRFDG  449 (785)
Q Consensus       374 l~~n--~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~  449 (785)
                      ++.|  .+++..+..+....++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++.....+++|++|++++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence            5432  233333333434334666666666666542 233345567788888888876543 333445678888888888


Q ss_pred             CccccccCccc-CCCCCCcEEEccCC
Q 003931          450 NQFTGNITKAF-GVHPRLDFIRLSGN  474 (785)
Q Consensus       450 n~l~~~~~~~~-~~~~~L~~L~Ls~n  474 (785)
                      |+++......+ ..+|.+....+..+
T Consensus       523 n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          523 YRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            88776544333 34666666655544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=252.21  Aligned_cols=248  Identities=23%  Similarity=0.281  Sum_probs=210.5

Q ss_pred             CcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccc
Q 003931          128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV  207 (785)
Q Consensus       128 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  207 (785)
                      ...++.++..++ .+|..+.  ++++.|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456666666666 4454443  5777888888888777777788888888888888888777777788888888888888


Q ss_pred             cccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecC-cCcccCCccCcCCCCCcEEECcCcccccc
Q 003931          208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN-SFMGNIPPEIGLLTKLQYLFLYRNNFSGP  286 (785)
Q Consensus       208 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  286 (785)
                      |++++..+..|..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..|..+++|++|++++|.++. 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence            8888776777888899999999999988 666666999999999999995 4554455579999999999999999984 


Q ss_pred             CChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccccc
Q 003931          287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL  366 (785)
Q Consensus       287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  366 (785)
                      +| .+..+++|+.|+|++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            55 48899999999999999999989999999999999999999999989999999999999999999998888889999


Q ss_pred             CCCcEEEecCccccc
Q 003931          367 VKLNKFSVFTNNFSG  381 (785)
Q Consensus       367 ~~L~~l~l~~n~l~~  381 (785)
                      ++|+.+++++|.+..
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            999999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.3e-27  Score=245.88  Aligned_cols=232  Identities=22%  Similarity=0.289  Sum_probs=137.4

Q ss_pred             CCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeee
Q 003931          125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLA  204 (785)
Q Consensus       125 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  204 (785)
                      .++++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..++.+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467777777777777 55666777777777777777777 66777777777777777777776 5666777777777777


Q ss_pred             ccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccc
Q 003931          205 LAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFS  284 (785)
Q Consensus       205 l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  284 (785)
                      +++|++.+.+|..+...               .++. .++++++|++|++++|.++ .+|..++.+++|++|++++|.++
T Consensus       157 L~~n~~~~~~p~~~~~~---------------~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAST---------------DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEETTCCCCCSCSEEE---------------C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCCccccChhHhhc---------------cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            77776666666554430               0000 0233455555555555554 44445555555555555555555


Q ss_pred             ccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccc
Q 003931          285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS  364 (785)
Q Consensus       285 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  364 (785)
                      + +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            3 333455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCCCcEEEecCc
Q 003931          365 RLVKLNKFSVFTN  377 (785)
Q Consensus       365 ~l~~L~~l~l~~n  377 (785)
                      .+++++.+.+..+
T Consensus       299 ~L~~L~~l~l~~~  311 (328)
T 4fcg_A          299 QLPANCIILVPPH  311 (328)
T ss_dssp             GSCTTCEEECCGG
T ss_pred             hccCceEEeCCHH
Confidence            5555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3e-28  Score=253.99  Aligned_cols=258  Identities=22%  Similarity=0.243  Sum_probs=156.4

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEc
Q 003931           54 SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL  133 (785)
Q Consensus        54 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  133 (785)
                      .++..+++.+.+.......+..+++|++|++++|.++ .++...|.++++|++|++++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            3455566666665555555566667777777777776 3444445777777777777777765443  667777777777


Q ss_pred             CCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC
Q 003931          134 ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG  213 (785)
Q Consensus       134 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~  213 (785)
                      ++|++++..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            777766432     236677777777766654333   245666677777766665555666666666666666666655


Q ss_pred             Cchhcc-CCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhcc
Q 003931          214 LPLSLS-NLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE  292 (785)
Q Consensus       214 ~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  292 (785)
                      .+..+. .+++|++|++++|.+++. +.  ...+++|++|++++|.+.+. |..+..+++|++|++++|.++ .+|..+.
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALR  234 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhh
Confidence            555543 556666666666666532 22  22356666666666666543 333555666666666666665 3455555


Q ss_pred             CCCCCCEEECcCCccc-ccCCccCcCCCCCCEEEcc
Q 003931          293 KLTSLENLDLSGNQLS-GTIPPTLWNLTNLLSLQLF  327 (785)
Q Consensus       293 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~  327 (785)
                      .+++|+.|++++|++. +.+|..+..+++|+.+++.
T Consensus       235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            6666666666666665 4455555556666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=9e-28  Score=250.41  Aligned_cols=258  Identities=19%  Similarity=0.155  Sum_probs=149.9

Q ss_pred             ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF  158 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  158 (785)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            444555555554 3444455556666666666666665555566666666666666666654433  5666666666666


Q ss_pred             cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931          159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI  238 (785)
Q Consensus       159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  238 (785)
                      +|.+++..     ..++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            66655322     2256666666666665443322   355666666666666555555666666666666666666444


Q ss_pred             CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931          239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL  318 (785)
Q Consensus       239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  318 (785)
                      +..++..+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|+++ .+|..+..+
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            444334556666666666666544 2 223356666666666666643 333566666666666666666 345556666


Q ss_pred             CCCCEEEccccccc-CCCCCCCCCCCCCCEEEcc
Q 003931          319 TNLLSLQLFSNNLS-GTIPPEIGSMASLVAFDVN  351 (785)
Q Consensus       319 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~  351 (785)
                      ++|+.|++++|++. +..|..+..+++|+.++++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            66666666666665 4445555556666666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.7e-28  Score=252.69  Aligned_cols=248  Identities=21%  Similarity=0.254  Sum_probs=139.0

Q ss_pred             CCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCc-ccCCcccc-------CCCCCcEEEcCCCcccccCCcC
Q 003931           74 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ-GKLSPNVS-------KLSNLIDLRLATNKFSGPIPGD  145 (785)
Q Consensus        74 ~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~  145 (785)
                      ...++|+.|++++|.+  .+|..++..   |++|++++|.+. ...+..+.       ++++|++|++++|++++..|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            3445566666666666  456554332   666666666663 23333333       5666666666666666666655


Q ss_pred             C--CCCCCCCEEEcccCcccccCCccccCC-----CCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC--Cch
Q 003931          146 I--GSMSNLQLVELFNNSFTGQIPSSLGQL-----KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG--LPL  216 (785)
Q Consensus       146 l--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~  216 (785)
                      +  ..+++|++|++++|.+++. |..++.+     ++|++|++++|.+.+..+..++.+++|++|++++|++.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            4  6666666666666666655 5555554     6666666666666655556666666666666666665443  222


Q ss_pred             hc--cCCCCCCEEEccCCCCcc--ccCccccCCCCCCCEEEeecCcCcccCC-ccCcCCCCCcEEECcCccccccCChhc
Q 003931          217 SL--SNLSKLNDLGLSDNFLSG--EISANLIGNWTELESLQIQNNSFMGNIP-PEIGLLTKLQYLFLYRNNFSGPIPSEI  291 (785)
Q Consensus       217 ~l--~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~  291 (785)
                      .+  ..+++|++|++++|.+++  .++...+.++++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            33  555666666666666652  2233334455556666666666555443 23444555555555555555 344444


Q ss_pred             cCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccccccc
Q 003931          292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS  332 (785)
Q Consensus       292 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (785)
                      .  ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            3  4555555555555543 33 555555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.4e-28  Score=252.17  Aligned_cols=253  Identities=20%  Similarity=0.196  Sum_probs=196.8

Q ss_pred             ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCc-ccCChhhh------cCCCCCcEEECCCCCCcccCCc
Q 003931           48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS-GLIPERLF------TNLGKLEYLNLTENQFQGKLSP  120 (785)
Q Consensus        48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~f------~~l~~L~~L~Ls~n~i~~~~~~  120 (785)
                      .+...++|++|++++|.+  ..|..+...  |++|++++|.+. ..+|..++      .++++|++|++++|.+++..|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            445566777777877777  445544432  777888888773 34554431      1678888888888888877777


Q ss_pred             cc--cCCCCCcEEEcCCCcccccCCcCCCCC-----CCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc--CC
Q 003931          121 NV--SKLSNLIDLRLATNKFSGPIPGDIGSM-----SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT--IP  191 (785)
Q Consensus       121 ~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~  191 (785)
                      .+  ..+++|++|++++|++++. |..++.+     ++|++|++++|.+.+..|..++++++|++|++++|.+.+.  .+
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            65  7888888888888888866 6666665     8889999999988887778888889999999999887654  23


Q ss_pred             ccc--cCCcccCeeeccccccccC---CchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931          192 PEL--GLCTNLSYLALAVNQLSGG---LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE  266 (785)
Q Consensus       192 ~~~--~~l~~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  266 (785)
                      ..+  +.+++|++|++++|.+++.   ....+..+++|++|++++|.+++..|...+..+++|++|++++|.++ .+|..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~  271 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG  271 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence            333  7888999999999988732   22344678999999999999987665555777899999999999998 67777


Q ss_pred             CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccccc
Q 003931          267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGT  310 (785)
Q Consensus       267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  310 (785)
                      +.  ++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            76  8999999999999876 66 88999999999999998853

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.3e-24  Score=244.15  Aligned_cols=264  Identities=25%  Similarity=0.252  Sum_probs=141.5

Q ss_pred             CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      +++|++++|.++.++...+   ++|++|++++|.++.+.+    .+++|++|++++|.++ .+|.    .+++|++|+++
T Consensus        42 l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEEC
T ss_pred             CcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECc
Confidence            4555555555544432211   455555555555543222    2345555555555554 3443    34555555555


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI  190 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  190 (785)
                      +|.+++...    .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++ +
T Consensus       110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             SCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence            555553222    34455555555555553 2322   2555555555555553 222   23455566666665553 3


Q ss_pred             CccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCC
Q 003931          191 PPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL  270 (785)
Q Consensus       191 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  270 (785)
                      |   ..+++|+.|++++|.+++ +|.   ..++|+.|++++|.++ .+|..    +++|+.|++++|.+++ +|   ..+
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCC
T ss_pred             c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCC
Confidence            3   234556666666666553 222   2356666666666665 44432    3566677777766664 34   344


Q ss_pred             CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCC
Q 003931          271 TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIG  340 (785)
Q Consensus       271 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  340 (785)
                      ++|++|++++|.+++ +|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus       241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            667777777776663 443   4566777777777776 5566677777777777777777665554433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.7e-24  Score=241.59  Aligned_cols=267  Identities=27%  Similarity=0.367  Sum_probs=189.6

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEc
Q 003931           54 SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL  133 (785)
Q Consensus        54 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  133 (785)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|+|++|.+++. |.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence            5778888888877 3344443  67888888888877 5665    467788888888887743 33   5678888888


Q ss_pred             CCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC
Q 003931          134 ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG  213 (785)
Q Consensus       134 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~  213 (785)
                      ++|.+++. |.   .+++|+.|++++|.+++ +|..   +++|++|++++|.+++ +|.   ..++|+.|++++|.+++ 
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            88887753 33   56778888888888775 4443   4778888888888774 333   24677888888888875 


Q ss_pred             CchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccC
Q 003931          214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK  293 (785)
Q Consensus       214 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  293 (785)
                      +|   ..+++|+.|++++|.++ .+|..    .++|+.|++++|.+.. +|.   .+++|++|++++|.+++ +|   ..
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~  239 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VL  239 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred             Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CC
Confidence            34   45677888888888877 35442    4678888888887773 443   24678888888888875 44   44


Q ss_pred             CCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccccc
Q 003931          294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL  366 (785)
Q Consensus       294 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  366 (785)
                      +++|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|..+..+++|+.|++++|.+.+..|..+..+
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            577888888888887 3454   5677888888888887 667778888888888888888887777665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5e-26  Score=250.97  Aligned_cols=235  Identities=23%  Similarity=0.263  Sum_probs=148.6

Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE  156 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  156 (785)
                      ++|++|++++|.+++ ++...|..+++|++|+|++|.+++..+  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            355555555555553 333334555555555555555554333  5555666666666665553321     25666666


Q ss_pred             cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhcc-CCCCCCEEEccCCCCc
Q 003931          157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLS-NLSKLNDLGLSDNFLS  235 (785)
Q Consensus       157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~  235 (785)
                      +++|.+.+..+.   .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            666666654333   345677777777777766666667777777777777777766666664 5677777777777776


Q ss_pred             cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccc-ccCCcc
Q 003931          236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS-GTIPPT  314 (785)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~  314 (785)
                      +. +.  ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus       183 ~~-~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          183 DV-KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             EE-EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cc-cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            43 22  3356777777777777775433 46777777777777777774 5666777777777777777776 555666


Q ss_pred             CcCCCCCCEEEcc
Q 003931          315 LWNLTNLLSLQLF  327 (785)
Q Consensus       315 l~~l~~L~~L~L~  327 (785)
                      +..++.|+.+++.
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            6667777666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.5e-28  Score=281.01  Aligned_cols=443  Identities=15%  Similarity=0.106  Sum_probs=242.8

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCC-CCCC--c------------cccCCCCCCcEEEccCCCCcccCCcc
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFL-ETPD--W------------SKFSSMPSLTHLGLYLNELTLEFPSF   72 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i-~~~~--~------------~~f~~l~~L~~L~L~~n~i~~~~~~~   72 (785)
                      +.+++.++... .....+.++++|++|+++++.. ....  +            ..+..+++|++|++++|.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            34556554322 2334467788888888888742 1111  0            11235678888888888777665555


Q ss_pred             CC-CCCCccEEECCCC-CCcccCChhhhcCCCCCcEEECCCCCCcccCCccc----cCCCCCcEEEcCCCc--cccc-CC
Q 003931           73 IL-TCRNLTYLDLSLN-KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV----SKLSNLIDLRLATNK--FSGP-IP  143 (785)
Q Consensus        73 ~~-~l~~L~~L~Ls~n-~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~n~--~~~~-~~  143 (785)
                      +. .+++|++|++++| .++......++.++++|++|++++|.+++..+..+    ..+++|+.|++++|.  +... ++
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            54 5778888888887 44432223344578888888888887665443333    356688888888775  2111 11


Q ss_pred             cCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc-------CcccCCccccCCcccCee-eccccccccCCc
Q 003931          144 GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-------LNYTIPPELGLCTNLSYL-ALAVNQLSGGLP  215 (785)
Q Consensus       144 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~l~~n~i~~~~~  215 (785)
                      ..+..+++|++|++++|...+.++..+..+++|++|+++.+.       +.+ ++..+.++++|+.+ .+..... +.++
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~  282 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP  282 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence            112346788888888773322356667777788888755443       222 23355667777777 3332221 2344


Q ss_pred             hhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCccc-CCccCcCCCCCcEEECcC---------ccccc
Q 003931          216 LSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN-IPPEIGLLTKLQYLFLYR---------NNFSG  285 (785)
Q Consensus       216 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~  285 (785)
                      ..+..+++|++|++++|.+++......+..+++|++|++++| +... ++.....+++|++|++.+         +.+++
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            444456777777777777654443444566777777777776 3221 121223466777777632         33433


Q ss_pred             cCChhcc-CCCCCCEEECcCCcccccCCccCc-CCCCCCEEEcc--c----ccccCCCCCCCCCCCCCCEEEccCCcCcc
Q 003931          286 PIPSEIE-KLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLF--S----NNLSGTIPPEIGSMASLVAFDVNTNQLHG  357 (785)
Q Consensus       286 ~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  357 (785)
                      .....+. .+++|+.|+++.|.+++..+..+. .+++|++|+++  +    +.++. .|..                  .
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~------------------~  422 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD------------------I  422 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH------------------H
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-Cchh------------------h
Confidence            2222222 366777776666666654444443 46667777776  2    22321 1100                  0


Q ss_pred             ccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccc-cCCCCCcEEEccCCCCcccCCc-c
Q 003931          358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHEL-CSGFALEELTVNGNNFTGSLPA-C  435 (785)
Q Consensus       358 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~  435 (785)
                      .++..+..+++|+.|++++ .+++..+..+....++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... .
T Consensus       423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~  501 (594)
T 2p1m_B          423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN  501 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred             HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence            1111123344444444433 33333333333322356666666665544333333 3456677777777776543322 3


Q ss_pred             ccCCCCCcEEEcccCccccccCccc-CCCCCCcEEEccCC
Q 003931          436 LRNCSNLNRVRFDGNQFTGNITKAF-GVHPRLDFIRLSGN  474 (785)
Q Consensus       436 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~Ls~n  474 (785)
                      ...+++|++|++++|+++......+ ..+|+++...+..+
T Consensus       502 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          502 ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            3456778888888887754433333 34567766655544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.3e-26  Score=249.20  Aligned_cols=236  Identities=20%  Similarity=0.166  Sum_probs=161.9

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          101 LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       101 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      +++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3478999999999988878888889999999999998886655  8888888888888888875432     37888888


Q ss_pred             cccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCc
Q 003931          181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM  260 (785)
Q Consensus       181 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  260 (785)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+...+++|++|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888888765443   34677788888888777777777777777777777777776555553346677777777777776


Q ss_pred             ccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccccccc-CCCCCCC
Q 003931          261 GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS-GTIPPEI  339 (785)
Q Consensus       261 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~  339 (785)
                      +..  ....+++|++|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus       183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            542  23346667777777776665333 36666666666666666663 4555666666666666666655 3333334


Q ss_pred             CCCCCCCEEEc
Q 003931          340 GSMASLVAFDV  350 (785)
Q Consensus       340 ~~l~~L~~L~l  350 (785)
                      ..++.|+.+++
T Consensus       259 ~~l~~L~~l~~  269 (487)
T 3oja_A          259 SKNQRVQTVAK  269 (487)
T ss_dssp             TTCHHHHHHHH
T ss_pred             HhCCCCcEEec
Confidence            44444443333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.2e-27  Score=273.38  Aligned_cols=174  Identities=16%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             cEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc---cCCcc------------ccCCCCCCEEEcccCcCcccCCcc
Q 003931          129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG---QIPSS------------LGQLKNLQHLDLRMNALNYTIPPE  193 (785)
Q Consensus       129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~---~~~~~------------l~~l~~L~~L~l~~n~l~~~~~~~  193 (785)
                      +.++++.+... .....+..+++|+.|+++++....   ..|..            ...+++|++|++++|.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            34555443322 112234566778888888775321   11111            224556666666666655444444


Q ss_pred             cc-CCcccCeeecccc-ccccC-CchhccCCCCCCEEEccCCCCccccCc---cccCCCCCCCEEEeecCc--Cccc-CC
Q 003931          194 LG-LCTNLSYLALAVN-QLSGG-LPLSLSNLSKLNDLGLSDNFLSGEISA---NLIGNWTELESLQIQNNS--FMGN-IP  264 (785)
Q Consensus       194 ~~-~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~--l~~~-~~  264 (785)
                      +. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.   .+...+++|++|++++|.  +... ++
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            43 4556666666665 33321 223333556666666666654432211   112244555555555554  1100 01


Q ss_pred             ccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECc
Q 003931          265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS  303 (785)
Q Consensus       265 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  303 (785)
                      ..+..+++|++|++++|...+.+|..+..+++|+.|+++
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            111234555555555552211244445555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.9e-24  Score=215.78  Aligned_cols=205  Identities=23%  Similarity=0.257  Sum_probs=105.2

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL  109 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L  109 (785)
                      +|++|++++|.++.+.+.+|.++++|++|++++|.+++..+..|..+++|++|++++|.++                   
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------   89 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------------------   89 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-------------------
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-------------------
Confidence            4555555555555554445555555555555555555444444555555555555555544                   


Q ss_pred             CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcc
Q 003931          110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                            +..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+. +|..++.+++|++|++++|.+++
T Consensus        90 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           90 ------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             ------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence                  44444444444444444444444443333444555555555555554432 34455555555555555555554


Q ss_pred             cCCccccCCcccC----eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc
Q 003931          189 TIPPELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG  261 (785)
Q Consensus       189 ~~~~~~~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  261 (785)
                      ..+..+..+++|+    .|++++|.+++..+..+. ..+|++|++++|.++ .+|...++.+++|++|++++|.+.+
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence            4444444444444    555555555543333332 235666666666665 4444445666666666666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.1e-23  Score=214.99  Aligned_cols=204  Identities=24%  Similarity=0.203  Sum_probs=98.6

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 003931          103 KLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR  182 (785)
Q Consensus       103 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~  182 (785)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555554444455555555555555555554444455555555555555555555544555555555555555


Q ss_pred             cCcCcccCCccccCCcccCeeeccccccccC-CchhccCCCCCCEEEccCCCCccccCccccCCCCCCC----EEEeecC
Q 003931          183 MNALNYTIPPELGLCTNLSYLALAVNQLSGG-LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELE----SLQIQNN  257 (785)
Q Consensus       183 ~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~----~L~L~~n  257 (785)
                      +|.+.+..+..++.+++|++|++++|.+++. +|..+..+++|++|++++|.+++ ++...+..+++|+    +|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCCC
Confidence            5555544444455555555555555555432 34455555555555555555542 2222233333333    4444444


Q ss_pred             cCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccc
Q 003931          258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       258 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  308 (785)
                      .+.+..+..+. ..+|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            44433222222 224444444444444333333344444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5.2e-23  Score=209.08  Aligned_cols=204  Identities=25%  Similarity=0.251  Sum_probs=131.0

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL  109 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L  109 (785)
                      +.++++++++.++.++.. +.  +++++|++++|.++...+..|.++++|++|++++|.++ .+|..+|.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence            455666666666554422 21  45666666666666555556666666666666666665 455555566666666666


Q ss_pred             CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc
Q 003931          110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT  189 (785)
Q Consensus       110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  189 (785)
                      ++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            66666655555566666666666666666665555666666777777777766655555566667777777777777665


Q ss_pred             CCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccc
Q 003931          190 IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE  237 (785)
Q Consensus       190 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  237 (785)
                      .+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            555666677777777777777665555667777777777777776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6e-23  Score=208.59  Aligned_cols=203  Identities=23%  Similarity=0.249  Sum_probs=132.9

Q ss_pred             CCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECC
Q 003931            6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLS   85 (785)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls   85 (785)
                      ..+.++++++.++.++ ..+.  +++++|++++|.++.+.+.+|.++++|++|++++|.++.+.+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3566667766666433 2222  456677777777766666666677777777777776666666666666777777777


Q ss_pred             CCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931           86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ  165 (785)
Q Consensus        86 ~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~  165 (785)
                      +|.++ .+|...|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            77666 45555566667777777777776666666666677777777777776655555566667777777777766665


Q ss_pred             CCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc
Q 003931          166 IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG  212 (785)
Q Consensus       166 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  212 (785)
                      .+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            55566666777777777776665555556666677777777766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.5e-23  Score=213.12  Aligned_cols=205  Identities=26%  Similarity=0.263  Sum_probs=120.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL  104 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L  104 (785)
                      +..+++|+.|++++|.++.+.  ++..+++|++|++++|.+++.  ..+..+++|++|++++|.++ .++...|.++++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred             cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence            345556666666666555433  355566666666666665542  34555666666666666665 3444444566666


Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            66666666666555555566666666666666666555555566666666666666666555555566666666666666


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcc
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN  241 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  241 (785)
                      .+++..+..+..+++|++|++++|.+.+.       +++|+.++++.|.++|.+|..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            66655555556666666666666655432       345556666666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5e-24  Score=216.75  Aligned_cols=227  Identities=25%  Similarity=0.237  Sum_probs=153.5

Q ss_pred             CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      +..+++..+.+...  ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+++ ++  .+..+++|++|+++
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECT
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECC
Confidence            33445555544433  2345566777777777776543  246667777777777777763 33  34677777777777


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI  190 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  190 (785)
                      +|.+++..+..|..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            77777666666777777777777777777666666777777777777777777666666677777777777777777666


Q ss_pred             CccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCC
Q 003931          191 PPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL  270 (785)
Q Consensus       191 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  270 (785)
                      +..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+        .+++|+.+++..|.+.|.+|.+++.+
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            6666777777777777777776666667777777777777776653        24456777777777777777766655


Q ss_pred             CC
Q 003931          271 TK  272 (785)
Q Consensus       271 ~~  272 (785)
                      +.
T Consensus       246 ~~  247 (272)
T 3rfs_A          246 AP  247 (272)
T ss_dssp             CG
T ss_pred             CC
Confidence            43

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2e-22  Score=206.34  Aligned_cols=203  Identities=23%  Similarity=0.140  Sum_probs=128.3

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL  104 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L  104 (785)
                      +.++++++.++++++.++.++...+   +++++|++++|.+++..+..|..+++|++|++++|.+++ ++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence            4555666666666666665543322   456666666666666555666666666666666666653 3321  456666


Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      ++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            66666666666 44555666666666666666666555566666666777777777666655555666667777777777


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      +++...+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            766555555566677777777777776 45556666667777777777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.3e-22  Score=203.91  Aligned_cols=202  Identities=25%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             cCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCC
Q 003931           49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNL  128 (785)
Q Consensus        49 f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  128 (785)
                      +.+++++++++++++.++.+.+ .+.  ++++.|++++|.+++ ++...|.++++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            3444455555555555543322 221  345555555555542 2323335555555555555555433221  445555


Q ss_pred             cEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccc
Q 003931          129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVN  208 (785)
Q Consensus       129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  208 (785)
                      ++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            55555555554 33444455555555555555555444444555555555555555555444444445555555555555


Q ss_pred             ccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931          209 QLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF  259 (785)
Q Consensus       209 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  259 (785)
                      ++++..+..|..+++|++|++++|.++ .+|.. +...++|+.+++++|.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCc
Confidence            555444444445555555555555554 44444 33334555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.8e-23  Score=222.16  Aligned_cols=252  Identities=22%  Similarity=0.245  Sum_probs=119.0

Q ss_pred             EEccCCCCcccCCccCCCCCCccEEECCCCCCcccCCh----hhhcCCC-CCcEEECCCCCCcccCCccccCC-----CC
Q 003931           58 LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPE----RLFTNLG-KLEYLNLTENQFQGKLSPNVSKL-----SN  127 (785)
Q Consensus        58 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~  127 (785)
                      +.+++|.+++.+|..+...++|++|++++|.++ ..+.    ..|.+++ +|++|+|++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            344555555554444444444555555555554 2332    3334555 55555555555554444444433     55


Q ss_pred             CcEEEcCCCcccccCCcC----CCCC-CCCCEEEcccCcccccCCccc----cC-CCCCCEEEcccCcCcccCC----cc
Q 003931          128 LIDLRLATNKFSGPIPGD----IGSM-SNLQLVELFNNSFTGQIPSSL----GQ-LKNLQHLDLRMNALNYTIP----PE  193 (785)
Q Consensus       128 L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~L~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~----~~  193 (785)
                      |++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.++...+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            555555555555433332    2222 455555555555554433322    22 2355666666655553222    22


Q ss_pred             ccCCc-ccCeeeccccccccCCchhc----cCC-CCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCcccC
Q 003931          194 LGLCT-NLSYLALAVNQLSGGLPLSL----SNL-SKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFMGNI  263 (785)
Q Consensus       194 ~~~l~-~L~~L~l~~n~i~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~  263 (785)
                      +...+ +|++|++++|.+++..+..+    ..+ ++|++|++++|.+.+.    ++..+....++|++|++++|.+.+..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            23333 55555555555554444322    223 3566666666655531    22221111335555555555555432


Q ss_pred             C----ccCcCCCCCcEEECcCccccccC-------ChhccCCCCCCEEECcCCccccc
Q 003931          264 P----PEIGLLTKLQYLFLYRNNFSGPI-------PSEIEKLTSLENLDLSGNQLSGT  310 (785)
Q Consensus       264 ~----~~~~~l~~L~~L~L~~n~l~~~~-------p~~~~~l~~L~~L~Ls~n~l~~~  310 (785)
                      +    ..+..+++|++|++++|.+.+..       +..+..+++|+.||+++|++.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            2    22344555666666655533221       12334455555555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.9e-22  Score=199.65  Aligned_cols=198  Identities=17%  Similarity=0.212  Sum_probs=168.8

Q ss_pred             CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC-CcccCCccCCCCCCccEEECCC-CCCcccCChhhhcCCCCCcE
Q 003931           29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE-LTLEFPSFILTCRNLTYLDLSL-NKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~f~~l~~L~~  106 (785)
                      ++|++|++++|.++.+.+.+|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++...|.++++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            389999999999999988899999999999999997 8888888899999999999998 8888 577777789999999


Q ss_pred             EECCCCCCcccCCccccCCCCCc---EEEcCCC-cccccCCcCCCCCCCCC-EEEcccCcccccCCccccCCCCCCEEEc
Q 003931          107 LNLTENQFQGKLSPNVSKLSNLI---DLRLATN-KFSGPIPGDIGSMSNLQ-LVELFNNSFTGQIPSSLGQLKNLQHLDL  181 (785)
Q Consensus       107 L~Ls~n~i~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l  181 (785)
                      |++++|.+++ +|. |..+++|+   +|++++| .+++..+..|.++++|+ +|++++|.++...+..+.. ++|++|++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            9999999986 444 88888888   9999999 89877777899999999 9999999998554445555 89999999


Q ss_pred             ccCc-CcccCCccccCC-cccCeeeccccccccCCchhccCCCCCCEEEccCCC
Q 003931          182 RMNA-LNYTIPPELGLC-TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF  233 (785)
Q Consensus       182 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~  233 (785)
                      ++|. ++...+..|..+ ++|+.|++++|.+++..+.   .+++|+.|+++++.
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9995 887777888888 9999999999999854433   67889999988763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=6.6e-24  Score=228.06  Aligned_cols=187  Identities=21%  Similarity=0.254  Sum_probs=88.1

Q ss_pred             CCCCCCCEEEcccCcccc----cCCccccCCCCCCEEEcccCcCcccCCcccc----CC---------cccCeeeccccc
Q 003931          147 GSMSNLQLVELFNNSFTG----QIPSSLGQLKNLQHLDLRMNALNYTIPPELG----LC---------TNLSYLALAVNQ  209 (785)
Q Consensus       147 ~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~  209 (785)
                      ..+++|++|++++|.+..    .+|..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            344555555555555543    2344445555555555555555432222222    12         455555555555


Q ss_pred             cc-cCCc---hhccCCCCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCc----ccCCccCcCCCCCcEEE
Q 003931          210 LS-GGLP---LSLSNLSKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFM----GNIPPEIGLLTKLQYLF  277 (785)
Q Consensus       210 i~-~~~~---~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~  277 (785)
                      ++ +.++   ..+..+++|++|++++|.+...    +.+..+..+++|++|++++|.++    +.+|..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            54 2222   2344455555555555555411    11112444555555555555553    33444455555555555


Q ss_pred             CcCcccccc----CChhcc--CCCCCCEEECcCCcccc----cCCccC-cCCCCCCEEEcccccccC
Q 003931          278 LYRNNFSGP----IPSEIE--KLTSLENLDLSGNQLSG----TIPPTL-WNLTNLLSLQLFSNNLSG  333 (785)
Q Consensus       278 L~~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~L~~n~l~~  333 (785)
                      |++|.+++.    ++.++.  .+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            555555433    233332  25555555555555554    244443 334555555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=208.76  Aligned_cols=83  Identities=25%  Similarity=0.304  Sum_probs=38.3

Q ss_pred             CCCCCCEEEeecCcCcccCCccCcCC---CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCC
Q 003931          245 NWTELESLQIQNNSFMGNIPPEIGLL---TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL  321 (785)
Q Consensus       245 ~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  321 (785)
                      ++++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            34444444444444444444333333   35555555555554 3343332  4555555555555532 21 3444555


Q ss_pred             CEEEccccccc
Q 003931          322 LSLQLFSNNLS  332 (785)
Q Consensus       322 ~~L~L~~n~l~  332 (785)
                      ++|++++|+++
T Consensus       297 ~~L~L~~N~l~  307 (310)
T 4glp_A          297 DNLTLDGNPFL  307 (310)
T ss_dssp             SCEECSSTTTS
T ss_pred             cEEECcCCCCC
Confidence            55555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4.3e-23  Score=217.53  Aligned_cols=252  Identities=21%  Similarity=0.242  Sum_probs=144.5

Q ss_pred             ccEEECCCCCCcccCChhhhcCC--CCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCccccc-CCcCCCCCCCCCEE
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNL--GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP-IPGDIGSMSNLQLV  155 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L  155 (785)
                      ++.++++++.+.    ...+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            566666666554    2233444  6677777777766654443 44566677777777666543 55556666677777


Q ss_pred             EcccCcccccCCccccCCCCCCEEEcccC-cCccc-CCccccCCcccCeeecccc-ccccC-CchhccCCC-CCCEEEcc
Q 003931          156 ELFNNSFTGQIPSSLGQLKNLQHLDLRMN-ALNYT-IPPELGLCTNLSYLALAVN-QLSGG-LPLSLSNLS-KLNDLGLS  230 (785)
Q Consensus       156 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~-~L~~L~L~  230 (785)
                      ++++|.+.+..+..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77777666555666666677777777766 45432 4444556666666666666 66543 345556666 66666666


Q ss_pred             CC--CCc-cccCccccCCCCCCCEEEeecCc-CcccCCccCcCCCCCcEEECcCcc-ccccCChhccCCCCCCEEECcCC
Q 003931          231 DN--FLS-GEISANLIGNWTELESLQIQNNS-FMGNIPPEIGLLTKLQYLFLYRNN-FSGPIPSEIEKLTSLENLDLSGN  305 (785)
Q Consensus       231 ~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n  305 (785)
                      +|  .++ +.++. .+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            66  333 22333 24556666666666666 454555566666666666666663 22111124556666666666666


Q ss_pred             cccccCCccCcCC-CCCCEEEcccccccCCCCCCCC
Q 003931          306 QLSGTIPPTLWNL-TNLLSLQLFSNNLSGTIPPEIG  340 (785)
Q Consensus       306 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~  340 (785)
                       ++..   .+..+ .++..|++++|++++..|..++
T Consensus       283 -i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          283 -VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             -cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence             3221   22222 1244455666666665555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.7e-23  Score=220.87  Aligned_cols=259  Identities=17%  Similarity=0.178  Sum_probs=150.1

Q ss_pred             EEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCC----ccccCCC-CCcEEEcCCCcccccCCcCCCCC-----C
Q 003931           81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS----PNVSKLS-NLIDLRLATNKFSGPIPGDIGSM-----S  150 (785)
Q Consensus        81 ~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~  150 (785)
                      ++++++|.+++.+|.. +...++|++|+|++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4677788877665553 3555558888888888776665    5666776 77777777777776555555443     6


Q ss_pred             CCCEEEcccCcccccCCccc----cCC-CCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccC-CCCC
Q 003931          151 NLQLVELFNNSFTGQIPSSL----GQL-KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSN-LSKL  224 (785)
Q Consensus       151 ~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~-l~~L  224 (785)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+..                    .+.. .++|
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L  140 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASI  140 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTC
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCce
Confidence            66666666666665444432    223 55666666666655433322211                    1112 1345


Q ss_pred             CEEEccCCCCccccCcc---ccCCCC-CCCEEEeecCcCcccCCcc----CcCC-CCCcEEECcCcccccc----CChhc
Q 003931          225 NDLGLSDNFLSGEISAN---LIGNWT-ELESLQIQNNSFMGNIPPE----IGLL-TKLQYLFLYRNNFSGP----IPSEI  291 (785)
Q Consensus       225 ~~L~L~~n~l~~~~~~~---~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~p~~~  291 (785)
                      ++|++++|.+.+.....   .+..++ +|++|++++|.+.+..+..    +..+ ++|++|+|++|.+++.    ++..+
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            55555555444211111   122232 5666666666655444432    2333 4677777777777642    33444


Q ss_pred             cC-CCCCCEEECcCCcccccCC----ccCcCCCCCCEEEcccccccCCC-------CCCCCCCCCCCEEEccCCcCcccc
Q 003931          292 EK-LTSLENLDLSGNQLSGTIP----PTLWNLTNLLSLQLFSNNLSGTI-------PPEIGSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       292 ~~-l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~-------p~~~~~l~~L~~L~l~~n~l~~~~  359 (785)
                      .. .++|++|+|++|.+++..+    ..+..+++|++|++++|.+.+..       +..+..+++|+.+|+++|.+....
T Consensus       221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            44 3578888888888775433    33466778888888888754332       234566777777777777776554


Q ss_pred             C
Q 003931          360 P  360 (785)
Q Consensus       360 ~  360 (785)
                      +
T Consensus       301 ~  301 (362)
T 3goz_A          301 S  301 (362)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4e-21  Score=191.38  Aligned_cols=196  Identities=15%  Similarity=0.168  Sum_probs=101.2

Q ss_pred             CCCEEEcccCcccccCCccccCCCCCCEEEcccCc-CcccCCccccCCcccCeeeccc-cccccCCchhccCCCCCCEEE
Q 003931          151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-LNYTIPPELGLCTNLSYLALAV-NQLSGGLPLSLSNLSKLNDLG  228 (785)
Q Consensus       151 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~  228 (785)
                      +|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444444444444444455555555543 4433333444455555555554 445444444455555555555


Q ss_pred             ccCCCCccccCccccCCCCCCC---EEEeecC-cCcccCCccCcCCCCCc-EEECcCccccccCChhccCCCCCCEEECc
Q 003931          229 LSDNFLSGEISANLIGNWTELE---SLQIQNN-SFMGNIPPEIGLLTKLQ-YLFLYRNNFSGPIPSEIEKLTSLENLDLS  303 (785)
Q Consensus       229 L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  303 (785)
                      +++|.+++ +|.  ++.+++|+   +|++++| .+.+..+..|..+++|+ +|++++|.++...+..|.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            55555542 443  44555555   6666666 55555445556666666 6666666665333333333 566666666


Q ss_pred             CCc-ccccCCccCcCC-CCCCEEEcccccccCCCCCCCCCCCCCCEEEccCC
Q 003931          304 GNQ-LSGTIPPTLWNL-TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN  353 (785)
Q Consensus       304 ~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n  353 (785)
                      +|+ +++..+..|..+ ++|++|++++|++++ +|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            663 655445555666 666666666666653 2322  4455555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8.7e-21  Score=190.34  Aligned_cols=180  Identities=25%  Similarity=0.307  Sum_probs=136.4

Q ss_pred             CCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECC
Q 003931            6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLS   85 (785)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls   85 (785)
                      ..++++++++.++.++. .+.  ++++.|++++|.++.+.+.+|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45778888888775443 233  578888888888888877778888888888888888887777778888888888888


Q ss_pred             CCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931           86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ  165 (785)
Q Consensus        86 ~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~  165 (785)
                      +|.++ .+|...|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++.
T Consensus        92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            88887 56666667788888888888888776666677777888888888877766666677777777777777777766


Q ss_pred             CCccccCCCCCCEEEcccCcCccc
Q 003931          166 IPSSLGQLKNLQHLDLRMNALNYT  189 (785)
Q Consensus       166 ~~~~l~~l~~L~~L~l~~n~l~~~  189 (785)
                      .+..+..+++|++|++++|.+.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            666777777777777777777643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=4.1e-23  Score=217.67  Aligned_cols=224  Identities=21%  Similarity=0.203  Sum_probs=129.2

Q ss_pred             CCCcEEECCCCCCcccCCccccCC--CCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCE
Q 003931          102 GKLEYLNLTENQFQGKLSPNVSKL--SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQH  178 (785)
Q Consensus       102 ~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~  178 (785)
                      ..++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34677788777665   3445555  6777777777777765543 44677777777777776644 5556667777777


Q ss_pred             EEcccCcCcccCCccccCCcccCeeecccc-cccc-CCchhccCCCCCCEEEccCC-CCccccCccccCCCC-CCCEEEe
Q 003931          179 LDLRMNALNYTIPPELGLCTNLSYLALAVN-QLSG-GLPLSLSNLSKLNDLGLSDN-FLSGEISANLIGNWT-ELESLQI  254 (785)
Q Consensus       179 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L  254 (785)
                      |++++|.+++..+..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++......+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777777766666666666666777777666 4554 24444556666666666666 555331122245555 6666666


Q ss_pred             ecC--cCc-ccCCccCcCCCCCcEEECcCcc-ccccCChhccCCCCCCEEECcCCc-ccccCCccCcCCCCCCEEEcccc
Q 003931          255 QNN--SFM-GNIPPEIGLLTKLQYLFLYRNN-FSGPIPSEIEKLTSLENLDLSGNQ-LSGTIPPTLWNLTNLLSLQLFSN  329 (785)
Q Consensus       255 ~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n  329 (785)
                      ++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            665  233 2334444455555555555555 444444455555555555555553 21111113444555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=8.2e-24  Score=227.31  Aligned_cols=239  Identities=20%  Similarity=0.248  Sum_probs=151.8

Q ss_pred             cccCCCCCcEEEcCCCccccc----CCcCCCCCCCCCEEEcccCc---ccccCCcc-------ccCCCCCCEEEcccCcC
Q 003931          121 NVSKLSNLIDLRLATNKFSGP----IPGDIGSMSNLQLVELFNNS---FTGQIPSS-------LGQLKNLQHLDLRMNAL  186 (785)
Q Consensus       121 ~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~---~~~~~~~~-------l~~l~~L~~L~l~~n~l  186 (785)
                      .+..+++|++|++++|.+...    ++..+..+++|++|++++|.   +.+.+|..       +..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            344444555555555544433    12234556666666666642   33334443       36788899999999988


Q ss_pred             cc----cCCccccCCcccCeeeccccccccCCchhcc----CC---------CCCCEEEccCCCCc-cccCc--cccCCC
Q 003931          187 NY----TIPPELGLCTNLSYLALAVNQLSGGLPLSLS----NL---------SKLNDLGLSDNFLS-GEISA--NLIGNW  246 (785)
Q Consensus       187 ~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~~--~~~~~l  246 (785)
                      +.    .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|.+. +.++.  ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            76    4566777888888888888888654433333    33         78888888888876 23331  235567


Q ss_pred             CCCCEEEeecCcCcc-----cCCccCcCCCCCcEEECcCcccc----ccCChhccCCCCCCEEECcCCccccc----CCc
Q 003931          247 TELESLQIQNNSFMG-----NIPPEIGLLTKLQYLFLYRNNFS----GPIPSEIEKLTSLENLDLSGNQLSGT----IPP  313 (785)
Q Consensus       247 ~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  313 (785)
                      ++|++|++++|.+..     ..+..+..+++|++|+|++|.++    +.+|..+..+++|++|+|++|.+++.    ++.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            778888888887762     23336667777777777777775    45666777777777777777777654    344


Q ss_pred             cC--cCCCCCCEEEcccccccC----CCCCCC-CCCCCCCEEEccCCcCcccc
Q 003931          314 TL--WNLTNLLSLQLFSNNLSG----TIPPEI-GSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       314 ~l--~~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~l~~n~l~~~~  359 (785)
                      .+  +.+++|++|++++|.+++    .+|..+ .++++|+.|++++|.+++..
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            44  236777777777777765    244444 44666666666666666444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.7e-21  Score=200.11  Aligned_cols=194  Identities=27%  Similarity=0.314  Sum_probs=100.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931           26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  105 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~  105 (785)
                      ..+++|++|++++|.++.++  ++..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++  .|..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence            44556666666666655543  35555566666666655554433  5555555555555555542 22  134555555


Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA  185 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  185 (785)
                      +|++++|.+++..  .+..+++|++|++++|.+++..+                          ++.+++|++|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~  162 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--------------------------LAGLTNLQYLSIGNAQ  162 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--------------------------ccCCCCccEEEccCCc
Confidence            5555555554321  24445555555555554443221                          4444455555555554


Q ss_pred             CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc
Q 003931          186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG  261 (785)
Q Consensus       186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  261 (785)
                      +++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ +++  +..+++|+.|++++|.+++
T Consensus       163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeec
Confidence            443221  4445555555555555543322  5555666666666666653 222  5666666666666666653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=6.4e-22  Score=205.47  Aligned_cols=223  Identities=17%  Similarity=0.198  Sum_probs=174.9

Q ss_pred             CCcEEEccCCCCCCCcc---ccccCCCCCCEEeCCCCCCCCCCcccc--CCCCCCcEEEccCCCCcccCC----ccCCCC
Q 003931            6 ELQYLSVYDNNLNGAIP---FQLSSLRKVRYLDLGGNFLETPDWSKF--SSMPSLTHLGLYLNELTLEFP----SFILTC   76 (785)
Q Consensus         6 ~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~~f--~~l~~L~~L~L~~n~i~~~~~----~~~~~l   76 (785)
                      .++.+.+.++.++...-   ..+..+++|++|++++|.+....+..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46788888877653211   112345679999999999988777777  889999999999999886544    445678


Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCccc---C-CccccCCCCCcEEEcCCCcccccCCc----CCCC
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK---L-SPNVSKLSNLIDLRLATNKFSGPIPG----DIGS  148 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~---~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~  148 (785)
                      ++|++|++++|.+. .++...|..+++|++|+|++|++.+.   . +..+..+++|++|++++|+++.. +.    .++.
T Consensus       145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhc
Confidence            89999999999997 45555668999999999999987642   1 23346788999999999998732 22    2467


Q ss_pred             CCCCCEEEcccCcccccCCccccCC---CCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCC
Q 003931          149 MSNLQLVELFNNSFTGQIPSSLGQL---KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLN  225 (785)
Q Consensus       149 l~~L~~L~L~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~  225 (785)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            8999999999999998878777776   69999999999998 5676664  7999999999999864 33 67889999


Q ss_pred             EEEccCCCCc
Q 003931          226 DLGLSDNFLS  235 (785)
Q Consensus       226 ~L~L~~n~l~  235 (785)
                      .|++++|.++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            9999999986

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.7e-21  Score=198.27  Aligned_cols=192  Identities=23%  Similarity=0.308  Sum_probs=157.1

Q ss_pred             CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      ++++|++|++++|.++.. + .+..+++|++|++++|.++.+.+  |..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            467899999999999865 3 58999999999999999998875  99999999999999999865  368999999999


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      ++++|.+++ ++.  |..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       113 ~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          113 DLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             ECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCC-chh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            999999984 554  6899999999999999986544  8899999999999999986433  78888888888888888


Q ss_pred             cccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc
Q 003931          163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS  211 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  211 (785)
                      ++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|.++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            75433  677777777777777776443  2555566666666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.7e-20  Score=186.80  Aligned_cols=179  Identities=22%  Similarity=0.255  Sum_probs=116.2

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL  109 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L  109 (785)
                      ..++++++++.++.++.. +.  +++++|++++|.+++..+..|.++++|++|++++|.+++ ++...|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence            456777877777776543 22  467777777777777777777777777777777777763 44455567777777777


Q ss_pred             CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc
Q 003931          110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT  189 (785)
Q Consensus       110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  189 (785)
                      ++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            77777766666666666777777777766655555556666666666666666655555566666666666666666555


Q ss_pred             CCccccCCcccCeeecccccccc
Q 003931          190 IPPELGLCTNLSYLALAVNQLSG  212 (785)
Q Consensus       190 ~~~~~~~l~~L~~L~l~~n~i~~  212 (785)
                      .+..+..+++|++|++++|.+.+
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeC
Confidence            44455555555555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.8e-20  Score=197.94  Aligned_cols=200  Identities=17%  Similarity=0.029  Sum_probs=115.7

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE-EECC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY-LNLT  110 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~-L~Ls  110 (785)
                      ++++.++++++.++.+.   .+++++|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.+|..+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666666666665322   2466777777777776666667777777777777777655666666677766654 4555


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc-CcccccCCccccCCC-CCCEEEcccCcCcc
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN-NSFTGQIPSSLGQLK-NLQHLDLRMNALNY  188 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~  188 (785)
                      +|+++...+..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            5666666666666777777777777766655554555555566666654 344444444444443 45566666666653


Q ss_pred             cCCccccCCcccCeeeccc-cccccCCchhccCCCCCCEEEccCCCCc
Q 003931          189 TIPPELGLCTNLSYLALAV-NQLSGGLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       189 ~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      . +......++|+.+++.+ |.++...+..|..+++|++|++++|+++
T Consensus       169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            3 22222344555555543 3344333334455555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=9.6e-20  Score=177.11  Aligned_cols=179  Identities=26%  Similarity=0.325  Sum_probs=89.0

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC
Q 003931            9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK   88 (785)
Q Consensus         9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~   88 (785)
                      .++.+++.++.++..   -.++|++|++++|.++.+....|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            445555554433221   12355555555555555555555555555555555555554444444555555555555555


Q ss_pred             CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCc
Q 003931           89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS  168 (785)
Q Consensus        89 i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  168 (785)
                      ++ .++...|..+++|++|++++|.+++..+..                        +..+++|++|++++|.+++..+.
T Consensus        88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGV------------------------FDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhH------------------------hccCCcCCEEECCCCccceeCHH
Confidence            54 334343444555555555555544444334                        44455555555555555444444


Q ss_pred             cccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCC
Q 003931          169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLS  222 (785)
Q Consensus       169 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~  222 (785)
                      .+..+++|++|++++|.+.+       .+++|+.|+++.|.++|.+|..++.++
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            44555555555555554432       234555555555555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.4e-19  Score=175.89  Aligned_cols=163  Identities=26%  Similarity=0.291  Sum_probs=131.7

Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE  156 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  156 (785)
                      ++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.++++|++|+
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            46666777777666 45555566777777777777777766666677777888888888888766666688899999999


Q ss_pred             cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc
Q 003931          157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|.++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            99999988777778999999999999999998777778999999999999998764       45789999999999999


Q ss_pred             ccCccccCCCCC
Q 003931          237 EISANLIGNWTE  248 (785)
Q Consensus       237 ~~~~~~~~~l~~  248 (785)
                      .+|.. ++.++.
T Consensus       180 ~ip~~-~~~l~~  190 (208)
T 2o6s_A          180 VVRNS-AGSVAP  190 (208)
T ss_dssp             TBBCT-TSSBCT
T ss_pred             eeecc-CccccC
Confidence            99987 666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.7e-19  Score=190.47  Aligned_cols=241  Identities=17%  Similarity=0.077  Sum_probs=134.0

Q ss_pred             cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCE-EEc
Q 003931           80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQL-VEL  157 (785)
Q Consensus        80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~L  157 (785)
                      ++++.++++++ .+|..+   .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45677777777 677654   2467777777777776555667777777777777777654333 45566666554 444


Q ss_pred             ccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccc
Q 003931          158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE  237 (785)
Q Consensus       158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  237 (785)
                      .+|.+....|..|..+++|++|++++|.+....+..+....++..+++.++                       +.+. .
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~-~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIH-T  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCC-E
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccc-c
Confidence            456666555666666666666666666665444333333334444444321                       2222 3


Q ss_pred             cCccccCCC-CCCCEEEeecCcCcccCCccCcCCCCCcEEECcC-ccccccCChhccCCCCCCEEECcCCcccccCCccC
Q 003931          238 ISANLIGNW-TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR-NNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL  315 (785)
Q Consensus       238 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  315 (785)
                      ++...+..+ ..++.|++++|+++.. |.......+|+++++.+ |.++.+.+..|..+++|+.||+++|+++...+.. 
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-  221 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-  221 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-
T ss_pred             ccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-
Confidence            333333333 2456666666666543 33333445666676654 4444333345667777777777777776443333 


Q ss_pred             cCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCC
Q 003931          316 WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN  353 (785)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n  353 (785)
                        +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       222 --~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 --LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             --CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             --hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence              3344445444443333444 3566666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.1e-18  Score=191.28  Aligned_cols=186  Identities=25%  Similarity=0.383  Sum_probs=97.4

Q ss_pred             CCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecc
Q 003931          127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA  206 (785)
Q Consensus       127 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  206 (785)
                      +|+.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..          
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~----------  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA----------  120 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT----------
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc----------
Confidence            56666666666664 44333  255666666666555 333   234455555555555543 333 322          


Q ss_pred             ccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccccc
Q 003931          207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP  286 (785)
Q Consensus       207 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  286 (785)
                                      +|++|++++|.+++ +|.    .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ 
T Consensus       121 ----------------~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-  174 (571)
T 3cvr_A          121 ----------------SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-  174 (571)
T ss_dssp             ----------------TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             ----------------CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-
Confidence                            44444444444442 332    24445555555555543 332   34555566666665554 


Q ss_pred             CChhccCCCCCCEEECcCCcccccCCccCcCCCCC-------CEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931          287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL-------LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  359 (785)
                      +|. |.  ++|+.|+|++|.++ .+|. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|.+++..
T Consensus       175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            444 43  56666666666665 3443 332  44       66666666666 45555556666666666666666666


Q ss_pred             Cccccc
Q 003931          360 PENISR  365 (785)
Q Consensus       360 ~~~~~~  365 (785)
                      |..+..
T Consensus       247 p~~l~~  252 (571)
T 3cvr_A          247 RESLSQ  252 (571)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=4e-18  Score=166.67  Aligned_cols=152  Identities=24%  Similarity=0.269  Sum_probs=85.3

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      +.++++++.++.++. .+.  ++|+.|++++|.|+.+.+.+|..+++|++|++++|.++++.|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            345566665554332 221  45666666666666665556666666666666666666555666666666666666666


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT  163 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~  163 (785)
                      .++ .+|..+|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            665 455555555666666666666555555555555555555555555555444444555555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=5e-18  Score=188.20  Aligned_cols=186  Identities=26%  Similarity=0.349  Sum_probs=145.4

Q ss_pred             CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931           30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL  109 (785)
Q Consensus        30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L  109 (785)
                      +|+.|++++|.++.++...+   ++|++|++++|.++. +|   ..+++|++|++++|.+++ +|. + ..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEEC
Confidence            88888888888887665432   678888888888884 44   456888899999998884 776 3 44  8889999


Q ss_pred             CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc
Q 003931          110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT  189 (785)
Q Consensus       110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  189 (785)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. |.  ++|++|++++|.++ .
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            9998886 444   67889999999998886 454   57889999999998886 565 65  78999999999988 5


Q ss_pred             CCccccCCccc-------CeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCC
Q 003931          190 IPPELGLCTNL-------SYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGN  245 (785)
Q Consensus       190 ~~~~~~~l~~L-------~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  245 (785)
                      +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|.. +..
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~  252 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES-LSQ  252 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH-HHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH-HHH
Confidence            555 554  67       99999999998 56777878999999999999999877766 443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2e-18  Score=176.80  Aligned_cols=171  Identities=27%  Similarity=0.324  Sum_probs=86.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931           26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  105 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~  105 (785)
                      ..+++|++|++++|.+..+.  .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++.  +..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS--LKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh--hccCCCCC
Confidence            44555666666666555542  35555556666666555554433  5555555555555555542 332  35555555


Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA  185 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  185 (785)
                      +|++++|.+++.  ..+..+++|+.|++++|++++.                          ..++.+++|++|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------------------------~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------------------------hhhccCCCCCEEEccCCc
Confidence            555555555532  2344445555555555544432                          234444444444444444


Q ss_pred             CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931          186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      +++..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus       168 l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          168 ISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             cccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            443322  44445555555555555432 2 2555566666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.7e-18  Score=175.82  Aligned_cols=171  Identities=26%  Similarity=0.294  Sum_probs=150.3

Q ss_pred             CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      ++++|+.|++++|.++...  .+..+++|++|++++|.++.+.+  |..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            4678999999999998663  48899999999999999998775  99999999999999999864  348999999999


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      ++++|.+++ ++  .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|++|++++|.+
T Consensus       118 ~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          118 SLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             ECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            999999984 43  358999999999999999965  679999999999999999997654  88999999999999999


Q ss_pred             cccCCccccCCCCCCEEEcccCcCcc
Q 003931          163 TGQIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      ++. + .+..+++|+.|++++|.+..
T Consensus       191 ~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          191 SDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCC-h-hhccCCCCCEEECcCCcccC
Confidence            864 3 48889999999999998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.77  E-value=5.2e-17  Score=173.20  Aligned_cols=264  Identities=10%  Similarity=0.099  Sum_probs=132.9

Q ss_pred             CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEE
Q 003931           29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN  108 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~  108 (785)
                      ..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|++|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence            3444444433 2444444444443 3444444433 444444444443 344444443 233 34444444455555555


Q ss_pred             CCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931          109 LTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       109 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      +++|.++.....+|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            544444444444443 344555554422 33334444555555555555442 33333344444 445555552 23333


Q ss_pred             cCCccccCCcccCeeeccccccc-----cCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccC
Q 003931          189 TIPPELGLCTNLSYLALAVNQLS-----GGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI  263 (785)
Q Consensus       189 ~~~~~~~~l~~L~~L~l~~n~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  263 (785)
                      .....|.+|++|+.+.+.+|.+.     ...+.+|.++++|+.+.+.+ .++ .++..+|.++++|+.+.+..+ +....
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            44445555555555555544433     23445566666666666663 344 555556666677777776443 55455


Q ss_pred             CccCcCCCCCcEEECcCccccccCChhccCCC-CCCEEECcCCcc
Q 003931          264 PPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLT-SLENLDLSGNQL  307 (785)
Q Consensus       264 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l  307 (785)
                      +.+|..+ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            5666666 677777777766555555566653 566666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=6.5e-19  Score=197.70  Aligned_cols=183  Identities=24%  Similarity=0.303  Sum_probs=92.3

Q ss_pred             EccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCc
Q 003931           11 SVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS   90 (785)
Q Consensus        11 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~   90 (785)
                      .+..+.+....+  +..+++|+.|++++|.+..++  .|..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.
T Consensus        27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             hccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence            344444443322  345666666666666665543  35556666666666666655443  555566666666666555


Q ss_pred             ccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccc
Q 003931           91 GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL  170 (785)
Q Consensus        91 ~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l  170 (785)
                       .+|  .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +
T Consensus       101 -~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A          101 -DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             -CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             -CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence             233  135555555555555555532  2355555555555555555433  334445555555555555444333  4


Q ss_pred             cCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccc
Q 003931          171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQL  210 (785)
Q Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  210 (785)
                      ..+++|++|+|++|.+++.  ..+..+++|+.|++++|.+
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence            4444444444444444432  2233344444444444433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=9.4e-18  Score=164.05  Aligned_cols=155  Identities=15%  Similarity=0.230  Sum_probs=103.3

Q ss_pred             eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCc
Q 003931          202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN  281 (785)
Q Consensus       202 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  281 (785)
                      .+++++|.++. +|..+.  +.+++|++++|.+++..+..+++.+++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            44555555442 333322  234566666666664444444666677777777777777666666777777777777777


Q ss_pred             cccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931          282 NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       282 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  359 (785)
                      .+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.+++++|.+.+..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            777666666777777777777777777766777777777777777777777666777777777777777777766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=3.4e-19  Score=186.46  Aligned_cols=285  Identities=13%  Similarity=0.081  Sum_probs=163.4

Q ss_pred             CCCCCEEeCCCCCCCCCCccccCC-CCCCcEEEccCCCCc--ccCCccCCCCCCccEEECCCCCCcccCChhhhcC----
Q 003931           28 LRKVRYLDLGGNFLETPDWSKFSS-MPSLTHLGLYLNELT--LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTN----  100 (785)
Q Consensus        28 l~~L~~L~L~~n~i~~~~~~~f~~-l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~----  100 (785)
                      +.+++.|.++++ +...+...+.. +++|++|+|++|.+.  ......+   +.++.+.+..+    .+|...|.+    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccc
Confidence            456677777653 22112222333 667777777777766  2222222   22444555544    456666777    


Q ss_pred             ----CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCc----ccccCCccccC
Q 003931          101 ----LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS----FTGQIPSSLGQ  172 (785)
Q Consensus       101 ----l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~----~~~~~~~~l~~  172 (785)
                          +++|++|+|.+ .++.+...+|.+|++|+.+++++|.+....+..|.++.++..+....+.    .......+|..
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                77777777777 6776677777777777777777777766666777776666666655421    12223344555


Q ss_pred             CCCCC-EEEcccCcC-cccCCccccCCcccCeeeccccccccCCchhc-cCCCCCCEEEccCCCCccccCccccCCCCCC
Q 003931          173 LKNLQ-HLDLRMNAL-NYTIPPELGLCTNLSYLALAVNQLSGGLPLSL-SNLSKLNDLGLSDNFLSGEISANLIGNWTEL  249 (785)
Q Consensus       173 l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  249 (785)
                      +..|+ .+.+....- .......-....+++.+.+.++-.. .....+ ..+++|+.+++++|.++ .++..+|.++++|
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L  252 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYL  252 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTC
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCC
Confidence            55665 444432211 0000000112344555555443221 111111 23667777777777766 6666667777777


Q ss_pred             CEEEeecCcCcccCCccCcCCCCCc-EEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEE
Q 003931          250 ESLQIQNNSFMGNIPPEIGLLTKLQ-YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ  325 (785)
Q Consensus       250 ~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  325 (785)
                      +++++.+| +....+.+|..|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.++++|+.++
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77777766 5555556677777777 777766 55555566677777777777766766655566666666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=9e-18  Score=164.18  Aligned_cols=154  Identities=23%  Similarity=0.237  Sum_probs=86.0

Q ss_pred             EEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc
Q 003931           81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN  159 (785)
Q Consensus        81 ~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  159 (785)
                      .+++++|.++ .+|..+   ...+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|.++++|++|++++
T Consensus        15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4555555554 344432   2234555555555554432 3345555555555555555555555555556666666666


Q ss_pred             CcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931          160 NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI  238 (785)
Q Consensus       160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  238 (785)
                      |.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+.+..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            6655555555556666666666666666555555556666666666666666555556666666666666666655433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=3.7e-18  Score=180.88  Aligned_cols=177  Identities=25%  Similarity=0.165  Sum_probs=122.7

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCC-CCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      ++++++++.++.++....   ..++.|+|++|.+++..+..|. .+++|++|++++|.++ .++...|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            567777777766653322   3467777777777766666666 7777777777777776 4555556777777777777


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccc---cCCCCCCEEEcccCcCc
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL---GQLKNLQHLDLRMNALN  187 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~  187 (785)
                      +|.++...+..|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|   ..+++|++|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            777776666677777777777777777776667777777777777777777775444444   56778888888888887


Q ss_pred             ccCCccccCCcc--cCeeecccccccc
Q 003931          188 YTIPPELGLCTN--LSYLALAVNQLSG  212 (785)
Q Consensus       188 ~~~~~~~~~l~~--L~~L~l~~n~i~~  212 (785)
                      ...+..+..++.  ++.|++++|.+..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccC
Confidence            655556666665  4778888887763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=4.4e-19  Score=185.67  Aligned_cols=287  Identities=13%  Similarity=0.059  Sum_probs=203.3

Q ss_pred             CCCCcEEEccCCCCCCCccccccC-CCCCCEEeCCCCCCC--CCCccccCCCCCCcEEEccCCCCcccCCccCCC-----
Q 003931            4 LSELQYLSVYDNNLNGAIPFQLSS-LRKVRYLDLGGNFLE--TPDWSKFSSMPSLTHLGLYLNELTLEFPSFILT-----   75 (785)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~-----   75 (785)
                      +.+++.|.++++ +.......+.. +++|++|||++|+|.  ....+.+.   .++.+.+..+   .+.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhccccccc
Confidence            456788888864 32221223333 788999999999887  33333332   3455555555   344567777     


Q ss_pred             ---CCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcc----cccCCcCCCC
Q 003931           76 ---CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF----SGPIPGDIGS  148 (785)
Q Consensus        76 ---l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~----~~~~~~~l~~  148 (785)
                         |++|+.+++++ .++ .++...|.+|++|++|++++|.+..+.+.+|.++.++..+.+..+..    .......|.+
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               89999999988 777 68888889999999999999988888888898888888877766322    2223445667


Q ss_pred             CCCCC-EEEcccCccc-ccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCE
Q 003931          149 MSNLQ-LVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND  226 (785)
Q Consensus       149 l~~L~-~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  226 (785)
                      +..|+ .+.+...... ......-....+++.+.+.++-...........+++|+.+++++|.++...+.+|.++++|+.
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            77777 5555433211 000011113456677777665322111111124788999999998888777888999999999


Q ss_pred             EEccCCCCccccCccccCCCCCCC-EEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEEC
Q 003931          227 LGLSDNFLSGEISANLIGNWTELE-SLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL  302 (785)
Q Consensus       227 L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  302 (785)
                      +++.+| ++ .++..+|.++++|+ .+++.+ .+....+.+|..|++|+.++++.|.++.+.+.+|.++++|+.++.
T Consensus       255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999988 65 78888899999999 999988 777777889999999999999999998888889999999998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.5e-17  Score=162.71  Aligned_cols=152  Identities=23%  Similarity=0.224  Sum_probs=85.1

Q ss_pred             cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc
Q 003931           80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN  159 (785)
Q Consensus        80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  159 (785)
                      +.++++++.++ .+|..+   .++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            34555555555 455433   14556666666666555555555566666666666666555555555666666666666


Q ss_pred             CcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931          160 NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      |.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6655444444555556666666666555555555555555555555555555444444555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=9.4e-18  Score=177.78  Aligned_cols=176  Identities=24%  Similarity=0.196  Sum_probs=109.9

Q ss_pred             cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhc-CCCCCcEEECCCCCCcccCCccccCCCCCcEEEcC
Q 003931           56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT-NLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLA  134 (785)
Q Consensus        56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  134 (785)
                      ++++++++.++.+ |..+.  +.++.|+|++|.++ .++...|. ++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            4566666666543 33332  34666777777666 34444445 66677777777777666666666667777777777


Q ss_pred             CCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccc---cCCcccCeeeccccccc
Q 003931          135 TNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL---GLCTNLSYLALAVNQLS  211 (785)
Q Consensus       135 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~i~  211 (785)
                      +|++++..+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.++...+..+   ..+++|+.|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            777666555566666777777777777666666666667777777777776664333333   45666777777777766


Q ss_pred             cCCchhccCCCC--CCEEEccCCCCc
Q 003931          212 GGLPLSLSNLSK--LNDLGLSDNFLS  235 (785)
Q Consensus       212 ~~~~~~l~~l~~--L~~L~L~~n~l~  235 (785)
                      +..+..+..++.  ++.|++++|.+.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            555555665555  366667766665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.74  E-value=1.7e-16  Score=169.28  Aligned_cols=270  Identities=10%  Similarity=0.066  Sum_probs=198.6

Q ss_pred             cCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCC
Q 003931           49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNL  128 (785)
Q Consensus        49 f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  128 (785)
                      +..+..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++ .++...|.++ +|+.+.+.. .++.+...+|.+|++|
T Consensus       109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence            34456777887765 3666777778775 6888888776 55 5777777774 688888875 5666777788888888


Q ss_pred             cEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccc
Q 003931          129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVN  208 (785)
Q Consensus       129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  208 (785)
                      +.++++.|.++......|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+
T Consensus       183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~  257 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN  257 (401)
T ss_dssp             CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred             CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence            8888888888866666666 578888888744 66666777888888888888764 55455566666 67888888 44


Q ss_pred             ccccCCchhccCCCCCCEEEccCCCCc----cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccc
Q 003931          209 QLSGGLPLSLSNLSKLNDLGLSDNFLS----GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFS  284 (785)
Q Consensus       209 ~i~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  284 (785)
                      .++.....+|.++++|+.+.+.+|.+.    ..++..+|.++++|+.+.+.+ .+......+|..|++|+.+.+..+ ++
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            566566778888888888888877653    136666788888888888874 466666677888888888888554 66


Q ss_pred             ccCChhccCCCCCCEEECcCCcccccCCccCcCCC-CCCEEEccccccc
Q 003931          285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLT-NLLSLQLFSNNLS  332 (785)
Q Consensus       285 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~  332 (785)
                      .+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            5667778888 888888888887766666777774 6778888776543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.7e-17  Score=186.22  Aligned_cols=176  Identities=25%  Similarity=0.285  Sum_probs=155.5

Q ss_pred             CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      ++++|+.|++++|.+....  .|..+++|+.|+|++|.+..+.+  |..+++|+.|+|++|.+.+.  ..+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEE
Confidence            4788999999999998653  48999999999999999998775  89999999999999999864  378999999999


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      +|++|.+.+ ++.  |..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+
T Consensus       115 ~Ls~N~l~~-l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          115 SLEHNGISD-ING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECTTSCCCC-CGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCC-Ccc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            999999984 443  58999999999999999975  679999999999999999997666  89999999999999999


Q ss_pred             cccCCccccCCCCCCEEEcccCcCcccCCcc
Q 003931          163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPE  193 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  193 (785)
                      .+.  ..+..+++|+.|++++|.+.+.....
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred             CCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence            864  46999999999999999997644333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.7e-16  Score=170.42  Aligned_cols=335  Identities=12%  Similarity=0.027  Sum_probs=245.9

Q ss_pred             CCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChh
Q 003931           17 LNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER   96 (785)
Q Consensus        17 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~   96 (785)
                      ++.+...+|.++.+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+...
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence            5566778899999999999975 488888889999999999999765 66677788999999998888765 33 46667


Q ss_pred             hhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCC
Q 003931           97 LFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL  176 (785)
Q Consensus        97 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  176 (785)
                      .|.++..++......  +......+|.+|++|+.+.+..+.. ......|.++.+|+.+++..+ ++.....+|.++..|
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            777776555444333  3334567888999999999876643 356677888999999888776 454566778888888


Q ss_pred             CEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeec
Q 003931          177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN  256 (785)
Q Consensus       177 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  256 (785)
                      +.+.+..+...  +.........|+.+.+... ++......+..+..++.+.+..+..  .+....|..+..++.+....
T Consensus       211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECS
T ss_pred             ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCc
Confidence            88887766442  2334445677888877643 3334456778888899998887754  45556688888888888776


Q ss_pred             CcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCC
Q 003931          257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP  336 (785)
Q Consensus       257 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  336 (785)
                      ..+   ....|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ ++....
T Consensus       286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  359 (394)
T 4fs7_A          286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA  359 (394)
T ss_dssp             SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence            542   3346788889999988765 55566778888999999999754 66566678889999999998776 655666


Q ss_pred             CCCCCCCCCCEEEccCCcCccccCccccccCCCcEE
Q 003931          337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKF  372 (785)
Q Consensus       337 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  372 (785)
                      .+|.+|.+|+.+++..+- . .+...|.++++|+.+
T Consensus       360 ~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             HHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            788899999999886542 2 234567777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=4.7e-17  Score=160.26  Aligned_cols=153  Identities=24%  Similarity=0.227  Sum_probs=102.7

Q ss_pred             CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931           31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT  110 (785)
Q Consensus        31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls  110 (785)
                      -+.++.+++.++.++....   ++|++|++++|.+++..+..|..+++|++|++++|.++ .+|...|..+++|++|+|+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence            3456666666666654322   56777777777777666666777777777777777775 5565666677777777777


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      +|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            77777666666666777777777777776 456666677777777777777766555566677777777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=6.5e-17  Score=159.22  Aligned_cols=155  Identities=23%  Similarity=0.263  Sum_probs=139.5

Q ss_pred             CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      -+.++.+++.++.++.. +  .++|++|++++|.++.+.+.+|..+++|++|++++|.++.+.+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45789999988855442 3  38999999999999999999999999999999999999988888899999999999999


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI  166 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~  166 (785)
                      |.++ .++...|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....
T Consensus        98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9999 677777899999999999999999 67888999999999999999999877788999999999999999987543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=5.1e-18  Score=170.88  Aligned_cols=168  Identities=19%  Similarity=0.241  Sum_probs=113.8

Q ss_pred             CCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEEC
Q 003931            5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL   84 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L   84 (785)
                      .++..++++++.+++..  .+..+++|++|++++|.++.++  .+..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34455667777776544  4677778888888888777665  56777777788887777776554  777777777777


Q ss_pred             CCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc
Q 003931           85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG  164 (785)
Q Consensus        85 s~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~  164 (785)
                      ++|.++ .+|..  .. ++|++|++++|.+++.  ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+.+
T Consensus        93 ~~N~l~-~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLK-NLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCS-CCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccC-CcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            777776 35542  22 7777777777777653  3466777777777777777653 2 46667777777777777665


Q ss_pred             cCCccccCCCCCCEEEcccCcCcc
Q 003931          165 QIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       165 ~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      .  ..+..+++|++|++++|.+..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             h--HHhccCCCCCEEeCCCCcccC
Confidence            4  456666677777777666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=3.3e-16  Score=168.16  Aligned_cols=319  Identities=13%  Similarity=0.057  Sum_probs=250.6

Q ss_pred             CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCC
Q 003931           40 FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS  119 (785)
Q Consensus        40 ~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~  119 (785)
                      .++.|...||.+|.+|+.+.+..+ ++.+...+|.+|++|+.++++.+ ++ .++...|.++.+|+.+.+..+ +.....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecc
Confidence            467788899999999999999854 77788899999999999999876 55 688888999999999888754 555677


Q ss_pred             ccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcc
Q 003931          120 PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN  199 (785)
Q Consensus       120 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  199 (785)
                      .+|.++..+........  ......+|.++++|+.+.+..+. ......+|..+.+|+.+++..+ ++......|.++..
T Consensus       134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            78888866555444333  22445679999999999998654 4466678999999999999876 55566778899999


Q ss_pred             cCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECc
Q 003931          200 LSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLY  279 (785)
Q Consensus       200 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  279 (785)
                      |+.+.+..+...  +.........|+.+.+.... + .+....+..+..++.+.+..+... .....|..+..++.+...
T Consensus       210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~  284 (394)
T 4fs7_A          210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG  284 (394)
T ss_dssp             CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred             cceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence            999988776543  22334456789999987653 2 566666889999999999877543 566788899999999887


Q ss_pred             CccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931          280 RNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       280 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  359 (785)
                      .+.+   ....|..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+|.+|+.+++..+ ++..-
T Consensus       285 ~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          285 SVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             SSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            7653   3356888999999999765 55566778999999999999754 66566778999999999999876 66666


Q ss_pred             CccccccCCCcEEEecCc
Q 003931          360 PENISRLVKLNKFSVFTN  377 (785)
Q Consensus       360 ~~~~~~l~~L~~l~l~~n  377 (785)
                      ..+|..|.+|+.+.+..+
T Consensus       359 ~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG
T ss_pred             HHHhhCCCCCCEEEECCC
Confidence            778999999999998655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.4e-17  Score=157.37  Aligned_cols=154  Identities=12%  Similarity=0.160  Sum_probs=107.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL  104 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L  104 (785)
                      ...+++|++|++++|.++.++  .+..+++|++|++++|.+...  ..+..+++|++|++++|.+++..+.. |..+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred             hhhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence            356667777777777777555  466777777777777755432  36677777777777777777544544 3677777


Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCc-ccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEccc
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK-FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM  183 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~  183 (785)
                      ++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|.+++. + .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence            777777777776667777777778888888777 54 334 577778888888888877753 3 577788888888888


Q ss_pred             CcCc
Q 003931          184 NALN  187 (785)
Q Consensus       184 n~l~  187 (785)
                      |.+.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            8765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.5e-17  Score=155.36  Aligned_cols=152  Identities=21%  Similarity=0.303  Sum_probs=86.7

Q ss_pred             CCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcE
Q 003931          196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY  275 (785)
Q Consensus       196 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  275 (785)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.+..+..++.+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3445555555555554 222 3555555666666655443 222  2556666666666666666555566666666666


Q ss_pred             EECcCccccccCChhccCCCCCCEEECcCCc-ccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCc
Q 003931          276 LFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ-LSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQ  354 (785)
Q Consensus       276 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~  354 (785)
                      |++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|++++. + .+..+++|+.|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            6666666665556666666666666666666 43 333 466666666666666666532 2 45556666666666665


Q ss_pred             Cc
Q 003931          355 LH  356 (785)
Q Consensus       355 l~  356 (785)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=8.3e-20  Score=203.81  Aligned_cols=105  Identities=22%  Similarity=0.306  Sum_probs=59.1

Q ss_pred             CCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECc
Q 003931          224 LNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS  303 (785)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  303 (785)
                      |+.|++++|.+++ +|.  ++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|+
T Consensus       443 L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            5556666666552 443  555555666666655555 445555555555555555555554 34 45555555555555


Q ss_pred             CCcccccC-CccCcCCCCCCEEEcccccccCC
Q 003931          304 GNQLSGTI-PPTLWNLTNLLSLQLFSNNLSGT  334 (785)
Q Consensus       304 ~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~  334 (785)
                      +|++++.. |..++.+++|+.|++++|++++.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            55555544 55555555555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.4e-16  Score=160.32  Aligned_cols=150  Identities=20%  Similarity=0.256  Sum_probs=132.0

Q ss_pred             CCCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccE
Q 003931            2 GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTY   81 (785)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   81 (785)
                      +++++|++|++++|.++...  .+..+++|++|++++|.++.+.+  |..+++|++|++++|.+++..+  +.. ++|++
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~  110 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSR  110 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCE
T ss_pred             hhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccE
Confidence            35789999999999998654  68999999999999999998875  9999999999999999987543  233 89999


Q ss_pred             EECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCc
Q 003931           82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS  161 (785)
Q Consensus        82 L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  161 (785)
                      |++++|.+++ ++.  |..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|.
T Consensus       111 L~L~~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          111 LFLDNNELRD-TDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EECCSSCCSB-SGG--GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred             EEccCCccCC-Chh--hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence            9999999984 543  68999999999999999975  3789999999999999999976  678999999999999999


Q ss_pred             cccc
Q 003931          162 FTGQ  165 (785)
Q Consensus       162 ~~~~  165 (785)
                      +.+.
T Consensus       184 ~~~~  187 (263)
T 1xeu_A          184 CVNE  187 (263)
T ss_dssp             EECC
T ss_pred             ccCC
Confidence            9855

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=4.3e-17  Score=187.93  Aligned_cols=161  Identities=25%  Similarity=0.322  Sum_probs=99.8

Q ss_pred             cCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCc
Q 003931          472 SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE  551 (785)
Q Consensus       472 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  551 (785)
                      +.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|+++ .
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            334333 44556667777777777777776 45555667777777777777777 66777777777777777777777 6


Q ss_pred             CCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCccccc
Q 003931          552 IPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK  631 (785)
Q Consensus       552 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~~  631 (785)
                      +|..|..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+......+++++|.+++.+|..   
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---  360 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---  360 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc---
Confidence            6777777777777777777776 556667777777777777777777777766555443333677777777766643   


Q ss_pred             CCCCceEeccCC
Q 003931          632 LTSLEILNLSRN  643 (785)
Q Consensus       632 l~~L~~L~l~~n  643 (785)
                         |..|++++|
T Consensus       361 ---l~~l~l~~n  369 (727)
T 4b8c_D          361 ---RRFIEINTD  369 (727)
T ss_dssp             ------------
T ss_pred             ---cceeEeecc
Confidence               334445554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=6.3e-18  Score=188.65  Aligned_cols=195  Identities=23%  Similarity=0.233  Sum_probs=127.4

Q ss_pred             CCCCCcEEEccCCeeeeecccchhcccccceeccccce-------------eeeccCcchhccccCCeee-cccCccccC
Q 003931          462 VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR-------------ISGGIPAELGNLTRLGVLS-LDSNELTGK  527 (785)
Q Consensus       462 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~n~l~~~  527 (785)
                      .+++|+.|++++|.+. .+|..++.|++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            3455555555555554 445556666666666665543             3445555666666666666 444433211


Q ss_pred             CCc-----ccc--cCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccC
Q 003931          528 IPT-----DLG--KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI  600 (785)
Q Consensus       528 ~~~-----~l~--~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  600 (785)
                      ...     .+.  ....|+.|++++|++++ +|. +..+++|++|++++|+++ .+|..++.+++|+.|++++|++++ +
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence            000     000  01247788888888875 565 788888888888888887 667788888888888888888875 5


Q ss_pred             CcccchhhhhhheeecccccCCCCC-CcccccCCCCceEeccCCceeeecCCc---ccccccceeee
Q 003931          601 PSNLGNLFVLQYMLDLSSNSLSGTI-PQELGKLTSLEILNLSRNQLSGRIPAS---LSSMISLRSVD  663 (785)
Q Consensus       601 p~~~~~l~~l~~~l~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~l~~l~  663 (785)
                      | .++++..|+. |++++|.+++.. |..++.+++|++|++++|++++.+|..   +..+++|+.|+
T Consensus       502 p-~l~~l~~L~~-L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          502 D-GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             G-GGTTCSSCCE-EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             c-ccCCCCCCcE-EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            5 6777777776 788888888776 778888888888888888887665432   22356666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=5.9e-17  Score=186.74  Aligned_cols=120  Identities=29%  Similarity=0.384  Sum_probs=52.5

Q ss_pred             CccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCC
Q 003931           70 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSM  149 (785)
Q Consensus        70 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l  149 (785)
                      +..|..++.|+.|+|++|.+. .+|..+| .+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            344444444444555444444 3444442 4444444444444444 33444444444444444444444 334444444


Q ss_pred             CCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccc
Q 003931          150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL  194 (785)
Q Consensus       150 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  194 (785)
                      ++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            44444444444443 334344444444444444444444444333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=3.1e-15  Score=142.68  Aligned_cols=112  Identities=22%  Similarity=0.352  Sum_probs=59.5

Q ss_pred             CCCEEEeecCcCcccCCc-cCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931          248 ELESLQIQNNSFMGNIPP-EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL  326 (785)
Q Consensus       248 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  326 (785)
                      ++++|++++|.+.+..+. .++.+++|++|+|++|.+++..|.+|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            445555555555443332 2445555555555555555555555555555555555555555555545555555555555


Q ss_pred             ccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931          327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL  359 (785)
Q Consensus       327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  359 (785)
                      ++|++++..|..+..+++|+.+++++|.+.+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            555555555555555555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=4.3e-15  Score=141.74  Aligned_cols=111  Identities=27%  Similarity=0.363  Sum_probs=59.0

Q ss_pred             CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEc
Q 003931           78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL  157 (785)
Q Consensus        78 ~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  157 (785)
                      +|++|++++|.+++..+..+|..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            44455555555442222223455555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931          158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      ++|.+++..|..+..+++|++|++++|.+.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            5555555555555555555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.3e-15  Score=142.13  Aligned_cols=133  Identities=21%  Similarity=0.143  Sum_probs=91.5

Q ss_pred             CCCCCEEeCCCCCCC-CCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931           28 LRKVRYLDLGGNFLE-TPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY  106 (785)
Q Consensus        28 l~~L~~L~L~~n~i~-~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~  106 (785)
                      .++|++|++++|.++ ...+..|..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|. .+.++++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCE
Confidence            356777777777776 22234466677777777777777655  6667777777777777777744443 3466777777


Q ss_pred             EECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEcccCccc
Q 003931          107 LNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELFNNSFT  163 (785)
Q Consensus       107 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~n~~~  163 (785)
                      |++++|.+++... ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777777775422 567777778888888887775544   36777788888888887766

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.60  E-value=9.5e-14  Score=148.91  Aligned_cols=323  Identities=10%  Similarity=0.074  Sum_probs=208.2

Q ss_pred             CCCCccccccCCC-CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC---CcccCCccCCCCCCccEEECCCCCCccc
Q 003931           17 LNGAIPFQLSSLR-KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE---LTLEFPSFILTCRNLTYLDLSLNKLSGL   92 (785)
Q Consensus        17 i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~   92 (785)
                      ++.+...+|.++. .|+.+.+..+ ++.|...||.+|.+|+.+.+..+.   ++.+...+|.+|.+|+.+.+..+ ++ .
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~  127 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E  127 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence            3445566777774 4788887654 777777888888888888877653   66666777888888887777655 33 4


Q ss_pred             CChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccC
Q 003931           93 IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ  172 (785)
Q Consensus        93 ~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~  172 (785)
                      ++...|..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....+|.. .+|+.+.+..+-. .....+|..
T Consensus       128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred             ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence            66677778888888888643 44466677778888888887655 33344455543 5677777765433 244556777


Q ss_pred             CCCCCEEEcccCcCcccCCcc-------------ccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccC
Q 003931          173 LKNLQHLDLRMNALNYTIPPE-------------LGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEIS  239 (785)
Q Consensus       173 l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  239 (785)
                      +.+++......+.........             +.....+..+.+. +.++.....+|.++..|+.+.+.++..  .+.
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~  280 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV--SIG  280 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC--EEC
T ss_pred             ccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc--eec
Confidence            777777766554432111110             1112233333332 223334456788888888888876654  466


Q ss_pred             ccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCC
Q 003931          240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLT  319 (785)
Q Consensus       240 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  319 (785)
                      ..+|.+++.|+.+.+. +.+......+|..|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+++
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            6668888889888886 4455566677888889999988754 55566678888899999988654 5555567788899


Q ss_pred             CCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcC
Q 003931          320 NLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL  355 (785)
Q Consensus       320 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  355 (785)
                      +|+.+++.++....   ..+..+.+|+.+.+..+.+
T Consensus       358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            99999888875432   3466777888877765543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.4e-15  Score=138.55  Aligned_cols=132  Identities=22%  Similarity=0.164  Sum_probs=63.8

Q ss_pred             CCCcEEECCCCCCc-ccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          102 GKLEYLNLTENQFQ-GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       102 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554 33444445555555555555555533  3455555555555555555544444444455555555


Q ss_pred             cccCcCcccC-CccccCCcccCeeeccccccccCCc---hhccCCCCCCEEEccCCCCc
Q 003931          181 LRMNALNYTI-PPELGLCTNLSYLALAVNQLSGGLP---LSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       181 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~n~l~  235 (785)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555554321 1344444444444444444443322   23444444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.4e-15  Score=137.20  Aligned_cols=127  Identities=21%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             CCCCEEeCCCCCCC-CCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEE
Q 003931           29 RKVRYLDLGGNFLE-TPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL  107 (785)
Q Consensus        29 ~~L~~L~L~~n~i~-~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L  107 (785)
                      ++|+.|++++|.++ ...+..|..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|. .+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence            34444444444444 12223344444455555554444433  3444455555555555555432332 23445555555


Q ss_pred             ECCCCCCccc-CCccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEcc
Q 003931          108 NLTENQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELF  158 (785)
Q Consensus       108 ~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~  158 (785)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555555542 22445555555555555555554433   245555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=3.3e-14  Score=135.47  Aligned_cols=127  Identities=24%  Similarity=0.220  Sum_probs=80.2

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      ++++++++.++.++...+   ++|++|++++|.++ .+|..|..+++|++|++++|.++ .++...|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence            456666666665543322   35666666666665 33456666666666666666666 34545556666666666666


Q ss_pred             CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931          112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT  163 (785)
Q Consensus       112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~  163 (785)
                      |.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6666666666666777777777777776555556667777777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=3.6e-14  Score=133.55  Aligned_cols=130  Identities=27%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      +.++++++.++.++...   .++|++|++++|.+++..+..|..+++|++|++++|.++ .+|...|..+++|++|++++
T Consensus        10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence            44455555544443221   134555555555555444445555555555555555555 34444445555666666666


Q ss_pred             CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931          112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ  165 (785)
Q Consensus       112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~  165 (785)
                      |.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            665555555555566666666666666644444455666666666666666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.56  E-value=2.9e-13  Score=145.17  Aligned_cols=322  Identities=12%  Similarity=0.099  Sum_probs=223.7

Q ss_pred             CCCCCccccCCCC-CCcEEEccCCCCcccCCccCCCCCCccEEECCCCC---CcccCChhhhcCCCCCcEEECCCCCCcc
Q 003931           41 LETPDWSKFSSMP-SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK---LSGLIPERLFTNLGKLEYLNLTENQFQG  116 (785)
Q Consensus        41 i~~~~~~~f~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~f~~l~~L~~L~Ls~n~i~~  116 (785)
                      ++.|...||.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+.   ++ .+....|.++.+|+.+.+..+ ++.
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence            5667788898885 5999999764 777888899999999999987653   55 577888899999998887654 565


Q ss_pred             cCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccC
Q 003931          117 KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL  196 (785)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  196 (785)
                      ....+|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +......+|.. .+|+.+.+..+.. ......|..
T Consensus       128 I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred             ehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence            777888999999999997553 3356677888999999998765 44344555654 5788888876543 355567778


Q ss_pred             CcccCeeeccccccccCCchh-------------ccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccC
Q 003931          197 CTNLSYLALAVNQLSGGLPLS-------------LSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI  263 (785)
Q Consensus       197 l~~L~~L~l~~n~i~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  263 (785)
                      +..++......+.........             +.....+..+.+... +. .+...+|.++..|+.+.+.++.. ...
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~-~I~  280 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVV-SIG  280 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCC-EEC
T ss_pred             ccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccc-eec
Confidence            888887766554433211111             112233444444322 22 44555688889999999876543 355


Q ss_pred             CccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCC
Q 003931          264 PPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMA  343 (785)
Q Consensus       264 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  343 (785)
                      ..+|.+++.|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++.....+|.+|.
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            6678889999999996 4565566678899999999999765 55556678899999999999755 5545567788999


Q ss_pred             CCCEEEccCCcCccccCccccccCCCcEEEecCcc
Q 003931          344 SLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN  378 (785)
Q Consensus       344 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~  378 (785)
                      +|+.+++.++....   ..+..+..|+.+.+..+.
T Consensus       358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             CCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            99999998875432   345667777777765553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=4.5e-14  Score=132.92  Aligned_cols=128  Identities=27%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931           56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT  135 (785)
Q Consensus        56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  135 (785)
                      +.++++++.++.... .+  .++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        10 ~~l~~~~~~l~~~p~-~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCT-TC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCCC-CC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            445555555543321 11  135555555555555 34444445555555555555555544444455555555555555


Q ss_pred             CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCc
Q 003931          136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN  187 (785)
Q Consensus       136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  187 (785)
                      |++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5555444444555555555555555555444444455555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.1e-15  Score=134.05  Aligned_cols=126  Identities=21%  Similarity=0.194  Sum_probs=60.9

Q ss_pred             CCCcEEECCCCCCc-ccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          102 GKLEYLNLTENQFQ-GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       102 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      ++|++|++++|.++ +..|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555554 34444444555555555555555433  3445555555555555555544444444455555555


Q ss_pred             cccCcCccc-CCccccCCcccCeeeccccccccCCc---hhccCCCCCCEEEc
Q 003931          181 LRMNALNYT-IPPELGLCTNLSYLALAVNQLSGGLP---LSLSNLSKLNDLGL  229 (785)
Q Consensus       181 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L  229 (785)
                      +++|.+++. .+..++.+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555432 12344444455555555554443333   23444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=5.4e-14  Score=134.01  Aligned_cols=127  Identities=24%  Similarity=0.360  Sum_probs=89.2

Q ss_pred             cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931           56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT  135 (785)
Q Consensus        56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  135 (785)
                      ++++++++.++.+ |..+.  ++|++|++++|.++ .+|. .|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4677777776643 33332  46777777777776 5663 457777777777777777776667777777777777777


Q ss_pred             CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCc
Q 003931          136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN  187 (785)
Q Consensus       136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  187 (785)
                      |++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777666667777777777777777777665556777777777777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.7e-14  Score=134.25  Aligned_cols=133  Identities=20%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccCCCC-CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCC
Q 003931           24 QLSSLRKVRYLDLGGNFLETPDWSKFSSMP-SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG  102 (785)
Q Consensus        24 ~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~  102 (785)
                      .+.++.+|++|++++|.++.++  .+..+. +|++|++++|.+++.  ..|..+++|++|++++|.++ .+|..+|..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            4677888899999998888763  344444 899999999988876  67888889999999999988 56767778899


Q ss_pred             CCcEEECCCCCCcccCCc--cccCCCCCcEEEcCCCcccccCCcC----CCCCCCCCEEEcccCccc
Q 003931          103 KLEYLNLTENQFQGKLSP--NVSKLSNLIDLRLATNKFSGPIPGD----IGSMSNLQLVELFNNSFT  163 (785)
Q Consensus       103 ~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~L~~n~~~  163 (785)
                      +|++|++++|.+.. .+.  .+..+++|+.|++++|.++. .|..    +..+++|++|++++|...
T Consensus        89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999999864 443  78888999999999999884 4543    788899999999988765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=4.5e-14  Score=132.70  Aligned_cols=134  Identities=17%  Similarity=0.209  Sum_probs=97.5

Q ss_pred             ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCC
Q 003931           48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN  127 (785)
Q Consensus        48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  127 (785)
                      .|..+.+|++|++++|.++.. +......++|++|++++|.+++ ++  .|..+++|++|++++|.+++..+..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            466777888888888888754 4333333488888888888874 32  3577888888888888888665555678888


Q ss_pred             CcEEEcCCCcccccCCc--CCCCCCCCCEEEcccCcccccCCc----cccCCCCCCEEEcccCcCc
Q 003931          128 LIDLRLATNKFSGPIPG--DIGSMSNLQLVELFNNSFTGQIPS----SLGQLKNLQHLDLRMNALN  187 (785)
Q Consensus       128 L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~  187 (785)
                      |++|++++|++.. +|.  .+..+++|++|++++|.+.. .|.    .+..+++|++|+++.|...
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888888888863 444  67778888888888888874 444    3777888888888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.41  E-value=2.8e-11  Score=129.09  Aligned_cols=304  Identities=11%  Similarity=0.044  Sum_probs=205.1

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL  104 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L  104 (785)
                      +....+|+.+.+.. .++.|...+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .+....|... +|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cc
Confidence            45556788887765 377777788888888888888654 666777778777 5777777654 33 5666777654 68


Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc------------cCCccccC
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG------------QIPSSLGQ  172 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~------------~~~~~l~~  172 (785)
                      +.+.+..+ +......+|.++ ++..+.+..+ ++......|..+.+++.+....+....            .....+..
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            88888764 333455566655 4566555443 333445567777777777766543221            12223445


Q ss_pred             CCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEE
Q 003931          173 LKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESL  252 (785)
Q Consensus       173 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  252 (785)
                      ...+..+.+..... ......+..+..|+.+.+..+ +......++..+..|+.+.+..+ ++ .+...+|.++.+|+.+
T Consensus       193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i  268 (379)
T 4h09_A          193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTL  268 (379)
T ss_dssp             TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEE
T ss_pred             ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhccc
Confidence            55666666554332 244556677788888877654 44455667788888888888766 44 5666668888889988


Q ss_pred             EeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccccccc
Q 003931          253 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS  332 (785)
Q Consensus       253 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (785)
                      .+..+ +.......|..|++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.....+|.++++|+.+.+..+ ++
T Consensus       269 ~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~  345 (379)
T 4h09_A          269 NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT  345 (379)
T ss_dssp             EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred             ccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC
Confidence            88654 55455567888899999999888887677788888999999998754 55555677888999998888654 44


Q ss_pred             CCCCCCCCCCCC
Q 003931          333 GTIPPEIGSMAS  344 (785)
Q Consensus       333 ~~~p~~~~~l~~  344 (785)
                      .+...+|.++..
T Consensus       346 ~I~~~aF~~c~~  357 (379)
T 4h09_A          346 LIESGAFEGSSI  357 (379)
T ss_dssp             EECTTTTTTSSC
T ss_pred             EEchhHhhCCCC
Confidence            344556666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=4.9e-15  Score=142.31  Aligned_cols=132  Identities=27%  Similarity=0.281  Sum_probs=77.9

Q ss_pred             ccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCC
Q 003931          459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKL  538 (785)
Q Consensus       459 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  538 (785)
                      .+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            45555566666666666654 33 5666666666666666665 345555556666666666666664 23 45666666


Q ss_pred             CeecccCCcccCcCC-cccccCCCCCeEecCCCcCccCCCcc----------ccccCCCcEEeCCCCcCc
Q 003931          539 FNLNLSNNHLTGEIP-KSISNLTELAYLDLSNNKLTGDVPQE----------LGRFDKLLSLNLSHNDLS  597 (785)
Q Consensus       539 ~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  597 (785)
                      ++|++++|++++..+ ..+..+++|++|++++|++.+.+|..          +..+++|+.||  +|+++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            666666666653221 34566666666666666665544432          55666666665  44443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=5.5e-15  Score=141.92  Aligned_cols=156  Identities=22%  Similarity=0.288  Sum_probs=91.5

Q ss_pred             hhcccccceeccccceeeeccCc------chhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccc
Q 003931          484 WGECRNLSNLQLDRNRISGGIPA------ELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS  557 (785)
Q Consensus       484 ~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~  557 (785)
                      |.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45556666666666666665554      55555666666666665554 33 5555555555555555555 3444444


Q ss_pred             cCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCC-cccccCCCCc
Q 003931          558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIP-QELGKLTSLE  636 (785)
Q Consensus       558 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~-~~~~~l~~L~  636 (785)
                      .+++|++|++++|++++ +| .+..+++|+.                         +++++|.+++..+ ..+..+++|+
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~-------------------------L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRV-------------------------LYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSE-------------------------EEESEEECCCHHHHHHHTTTTTCS
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCE-------------------------EECCCCcCCchhHHHHHhcCCCCC
Confidence            44555555555555543 22 3444444444                         4555555443222 3566788889


Q ss_pred             eEeccCCceeeecCCc----------ccccccceeeecCCCchhh
Q 003931          637 ILNLSRNQLSGRIPAS----------LSSMISLRSVDFSDNELTE  671 (785)
Q Consensus       637 ~L~l~~n~l~~~~~~~----------~~~l~~l~~l~l~~n~l~e  671 (785)
                      +|++++|.+.+..|..          +..+++|+.+|  ++++++
T Consensus       144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999999887766553          66778888876  666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.38  E-value=5.4e-11  Score=126.83  Aligned_cols=303  Identities=12%  Similarity=0.066  Sum_probs=170.0

Q ss_pred             ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCC
Q 003931           48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN  127 (785)
Q Consensus        48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  127 (785)
                      .|....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .|....|.++ +|+.+.+..+ ++.+...+|..+ +
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            355556677777654 355566667777777777777654 44 5666666666 4666665533 444555566554 5


Q ss_pred             CcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc------------cCCcccc
Q 003931          128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY------------TIPPELG  195 (785)
Q Consensus       128 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~~~  195 (785)
                      |+.+.+..+- +......|.++ +++.+.+..+ ++.....+|..+.+++...+..+....            .....+.
T Consensus       115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             CSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             cccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            7777776542 22333444443 4555554433 333444556666667666665443221            1112233


Q ss_pred             CCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcE
Q 003931          196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY  275 (785)
Q Consensus       196 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  275 (785)
                      .+..+..+.+.... .......+..+.+|+.+.+..+ +. .+....+.++..|+.+.+..+ ++.....+|..+..|+.
T Consensus       192 ~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          192 AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            33444444443322 2233445556667777766554 22 444455666777777777654 44445556667777777


Q ss_pred             EECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcC
Q 003931          276 LFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL  355 (785)
Q Consensus       276 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  355 (785)
                      +.+..+ +......+|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ +
T Consensus       268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v  344 (379)
T 4h09_A          268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I  344 (379)
T ss_dssp             EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred             cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c
Confidence            777543 44344556677777777777766666555666777777777777543 44344556677777777666443 3


Q ss_pred             ccccCcccccc
Q 003931          356 HGELPENISRL  366 (785)
Q Consensus       356 ~~~~~~~~~~l  366 (785)
                      +..-..+|.++
T Consensus       345 ~~I~~~aF~~c  355 (379)
T 4h09_A          345 TLIESGAFEGS  355 (379)
T ss_dssp             CEECTTTTTTS
T ss_pred             CEEchhHhhCC
Confidence            33333344443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=4.6e-12  Score=117.88  Aligned_cols=104  Identities=27%  Similarity=0.342  Sum_probs=53.8

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      +.+++++|.++.++...   .++|++|++++|.+++..+..|..+++|++|++++|+++ .+|...|.++++|++|+|++
T Consensus        12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence            44555555554443221   144555555555555555555555555555555555555 34444445555555555555


Q ss_pred             CCCcccCCccccCCCCCcEEEcCCCccc
Q 003931          112 NQFQGKLSPNVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus       112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~  139 (785)
                      |++++..+..|..+++|++|+|++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555444445555555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=4.4e-12  Score=118.01  Aligned_cols=104  Identities=25%  Similarity=0.254  Sum_probs=55.9

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      +.+++++|.++.++. .+  .++|++|+|++|.|+.+.+..|.++++|++|+|++|.++++.+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            455555555554322 22  245555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCc
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQ  115 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~  115 (785)
                      .++ .+|...|..+++|++|+|++|.+.
T Consensus        89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555 344444455555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=7.8e-12  Score=116.65  Aligned_cols=104  Identities=23%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      +.+++++|.++.++...+   ++|++|++++|.+++..|..|.++++|++|+|++|+++ .+|..+|.++++|++|+|++
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence            455555555555443211   45555555555555555555555555555555555555 34444445555555555555


Q ss_pred             CCCcccCCccccCCCCCcEEEcCCCccc
Q 003931          112 NQFQGKLSPNVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus       112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~  139 (785)
                      |++++..+..|..+++|++|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            5555433333444444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=9.7e-12  Score=116.02  Aligned_cols=107  Identities=23%  Similarity=0.234  Sum_probs=96.2

Q ss_pred             CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      -+.+++++|.++.++. .+.  ++|++|++++|.++.+.+..|.++++|++|+|++|.++++.+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4789999999985544 343  8999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCccc
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGK  117 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~  117 (785)
                      |.++ .+|...|..+++|++|+|++|.+...
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999 67877789999999999999998843

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=2.6e-13  Score=143.16  Aligned_cols=135  Identities=21%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             CCCcEEECCCCCCcccCCccc-cCCCCCcEEEcCCCcccccCCcCC-----CCCCCCCEEEcccCccccc----CCcccc
Q 003931          102 GKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDI-----GSMSNLQLVELFNNSFTGQ----IPSSLG  171 (785)
Q Consensus       102 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~~~~~----~~~~l~  171 (785)
                      ++|++|+|++|.++......+ ..+++|+.|+|++|.++......+     ...++|++|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455555555555543222222 123455555555555543222222     2345566666666665431    233345


Q ss_pred             CCCCCCEEEcccCcCccc----CCccccCCcccCeeeccccccccC----CchhccCCCCCCEEEccCCCCcc
Q 003931          172 QLKNLQHLDLRMNALNYT----IPPELGLCTNLSYLALAVNQLSGG----LPLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       172 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      ..++|++|++++|.++..    ++..+...++|++|++++|.+++.    +...+...++|++|+|++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            566666666666666532    233445556677777777766542    23334455777777777777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=5.7e-13  Score=140.53  Aligned_cols=159  Identities=17%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccc-----cCCCCCcEEEcCCCccccc----CCcCCC
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-----SKLSNLIDLRLATNKFSGP----IPGDIG  147 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~n~~~~~----~~~~l~  147 (785)
                      ++|++|+|++|.++......++..+++|++|+|++|.++......+     ...++|++|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3455555555544422222222334445555555555543222222     2234555555555555431    122234


Q ss_pred             CCCCCCEEEcccCccccc----CCccccCCCCCCEEEcccCcCccc----CCccccCCcccCeeeccccccccCCchhcc
Q 003931          148 SMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMNALNYT----IPPELGLCTNLSYLALAVNQLSGGLPLSLS  219 (785)
Q Consensus       148 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~  219 (785)
                      .+++|++|+|++|.+...    ++..+...++|++|++++|.++..    ++..+...++|++|++++|.+++.....+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            455555566655555432    233444555666666666666532    222333455666666666666544333332


Q ss_pred             CC---C--CCCEEE--ccCCCCc
Q 003931          220 NL---S--KLNDLG--LSDNFLS  235 (785)
Q Consensus       220 ~l---~--~L~~L~--L~~n~l~  235 (785)
                      .+   .  .|+.+.  +..+.+.
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HCC------CEEECCCC----CH
T ss_pred             HHhcCCCccchhhHhhhcCCccC
Confidence            22   1  155555  5555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=4.4e-10  Score=118.17  Aligned_cols=65  Identities=22%  Similarity=0.193  Sum_probs=26.3

Q ss_pred             CCCCCCCEEEeec-CcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccc
Q 003931          244 GNWTELESLQIQN-NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS  308 (785)
Q Consensus       244 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  308 (785)
                      ..+++|+.|+|++ |.+.+..+..|+.+++|++|+|++|++++..|..|.++++|+.|+|++|+++
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            3333344444432 3333333333444444444444444444433334444444444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=3.8e-10  Score=118.70  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             EEccCC-CCCCCccccccCCCCCCEEeCCC-CCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931           10 LSVYDN-NLNGAIPFQLSSLRKVRYLDLGG-NFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus        10 L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      ++.+++ .++.+ |. +..+++|++|+|++ |.++.+.+.+|.++++|++|+|++|.++++.|..|.++++|++|+|++|
T Consensus        13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 45432 22 55555555555553 5555555555555555555555555555555555555555555555555


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCc
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQ  115 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~  115 (785)
                      +++ .+|..+|..++ |++|+|.+|.+.
T Consensus        91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            554 34444433333 444444444443

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.03  E-value=2.8e-11  Score=123.47  Aligned_cols=82  Identities=23%  Similarity=0.398  Sum_probs=59.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-.....+.|+||||||||+.||+| |+.|..      ++..+....        .+..+.    ++-..+.+++..|
T Consensus       216 PE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~--------~~~~p~----~~~~~~~~li~~C  283 (308)
T 4gt4_A          216 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQ--------VLPCPD----DCPAWVYALMIEC  283 (308)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTC--------CCCCCT----TCCHHHHHHHHHH
T ss_pred             HHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--------CCCCcc----cchHHHHHHHHHH
Confidence            577778889999999999999999999 898843      222221111        111111    1223356788999


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ++.+|++||+|.||+++|+..
T Consensus       284 ~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          284 WNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             TCSSGGGSCCHHHHHHHHHTS
T ss_pred             cCCChhHCcCHHHHHHHHHhc
Confidence            999999999999999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.02  E-value=3.4e-11  Score=122.29  Aligned_cols=88  Identities=16%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ..++.|+||||||||+.||+||+.|.+-.   ..+.. .......+|.+......   +-..+.+++..|++.+|++||+
T Consensus       212 ~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~-~~~~~~~~p~~~~~~~~---~~~~l~~li~~cl~~dP~~RPs  287 (307)
T 3omv_A          212 NPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIF-MVGRGYASPDLSKLYKN---CPKAMKRLVADCVKKVKEERPL  287 (307)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH-HHHTTCCCCCSTTSCTT---SCHHHHHHHHHHTCSSSTTSCC
T ss_pred             CCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHH-HHhcCCCCCCccccccc---chHHHHHHHHHHcCCCHhHCcC
Confidence            45789999999999999999999995310   00000 00011222322211111   1123456788999999999999


Q ss_pred             hHHHHHHHHhccccc
Q 003931          753 MRFVAQELSAKTQAY  767 (785)
Q Consensus       753 m~~vv~~l~~~~~~~  767 (785)
                      |.||++.|+.++.+.
T Consensus       288 ~~ei~~~Le~l~~~l  302 (307)
T 3omv_A          288 FPQILSSIELLQHSL  302 (307)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999886654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.01  E-value=4.5e-11  Score=122.34  Aligned_cols=89  Identities=17%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchh--------hhccCccc--------ccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELI--------TSLSGELF--------LKDVLDQRLPPPTGQLAEAVVLTINVAL  740 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~--------~~~~~~~~--------~~~~~d~~l~~~~~~~~~~~~~~~~ial  740 (785)
                      ..+.|+||||||||+.||+||+.|....        .+......        ..+.++|.+... ....++...+.+++.
T Consensus       194 ~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~-~~~~~~~~~l~~li~  272 (303)
T 3hmm_A          194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMR  272 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHH
T ss_pred             ccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCcc-ccchHHHHHHHHHHH
Confidence            5788999999999999999998875311        11111000        112233333221 112244556778999


Q ss_pred             hcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          741 ACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .|++.+|++||||.||+++|+++.+.
T Consensus       273 ~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          273 ECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             TTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999988653

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.98  E-value=6.3e-11  Score=122.17  Aligned_cols=85  Identities=28%  Similarity=0.409  Sum_probs=60.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.|+|||||||++.||+| |+.|..      ++..+...        .++..+. .   +-..+.+++..|
T Consensus       229 PE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g--------~~~~~p~-~---~~~~~~~li~~c  296 (329)
T 4aoj_A          229 PESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG--------RELERPR-A---CPPEVYAIMRGC  296 (329)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT--------CCCCCCT-T---CCHHHHHHHHHH
T ss_pred             hhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC--------CCCCCcc-c---ccHHHHHHHHHH
Confidence            477777889999999999999999999 899953      11111111        0111111 1   112345778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++.+|++||+|.||+++|+.+.+.
T Consensus       297 l~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          297 WQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             CCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             cCcChhHCcCHHHHHHHHHHHhhC
Confidence            999999999999999999998664

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.98  E-value=5.9e-11  Score=120.54  Aligned_cols=86  Identities=23%  Similarity=0.353  Sum_probs=61.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-.....+.|+|||||||++.||+| |+.|..      +...+....        .+..+. .   +-..+.+++..|
T Consensus       199 PE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~--------~~~~p~-~---~~~~~~~li~~c  266 (299)
T 4asz_A          199 PESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGR--------VLQRPR-T---CPQEVYELMLGC  266 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTC--------CCCCCT-T---CCHHHHHHHHHH
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC--------CCCCCc-c---chHHHHHHHHHH
Confidence            477777889999999999999999999 899953      111111110        111111 1   112355778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      ++.+|++||+|.||+++|+++.+..
T Consensus       267 l~~dP~~RPs~~~i~~~L~~~~~~~  291 (299)
T 4asz_A          267 WQREPHMRKNIKGIHTLLQNLAKAS  291 (299)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             cCCChhHCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999999887653

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=98.83  E-value=3.7e-10  Score=117.38  Aligned_cols=90  Identities=24%  Similarity=0.308  Sum_probs=59.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccc-c-CCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVL-D-QRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~-d-~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+-.....+.|+|||||||++.||+| |+.|..-..   ....+...+ + .++..+. ..   -..+.++...|++.+
T Consensus       256 PE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~---~~~~~~~~i~~g~~~~~p~-~~---~~~~~~li~~c~~~d  328 (353)
T 4ase_A          256 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK---IDEEFCRRLKEGTRMRAPD-YT---TPEMYQTMLDCWHGE  328 (353)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC---CSHHHHHHHHHTCCCCCCT-TC---CHHHHHHHHHHTCSS
T ss_pred             HHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC---HHHHHHHHHHcCCCCCCCc-cC---CHHHHHHHHHHcCcC
Confidence            477777889999999999999999999 899953100   000000111 1 1111111 11   123456778999999


Q ss_pred             CCCCCChHHHHHHHHhcccc
Q 003931          747 PDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      |++||+|.||++.|+++-+.
T Consensus       329 P~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          329 PSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             GGGSCCHHHHHHHHHHHHHH
T ss_pred             hhHCcCHHHHHHHHHHHHHH
Confidence            99999999999999887543

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.80  E-value=2.2e-09  Score=111.69  Aligned_cols=94  Identities=33%  Similarity=0.469  Sum_probs=70.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-----------hhhhccC---cccccccccCCCCCCCchhHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-----------LITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLT  735 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-----------~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~  735 (785)
                      +|+-.....+.++|||||||++.|++||+.|.+           ...|+..   .....++.++.+...  ...++...+
T Consensus       204 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l  281 (326)
T 3uim_A          204 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN--YKDEEVEQL  281 (326)
T ss_dssp             HHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS--CCHHHHHHH
T ss_pred             HHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccc--cCHHHHHHH
Confidence            455556678899999999999999999999975           2333332   233455666665433  223456678


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHHHHHhccc
Q 003931          736 INVALACTSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+++..|.+.+|++||+|.||+++|++...
T Consensus       282 ~~li~~cl~~dP~~Rps~~ell~~L~~~~~  311 (326)
T 3uim_A          282 IQVALLCTQSSPMERPKMSEVVRMLEGDGL  311 (326)
T ss_dssp             HHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred             HHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence            889999999999999999999999987544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=3.3e-09  Score=110.66  Aligned_cols=84  Identities=14%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             CCCCCCEEEeecCcCcccCCccC---cCCCCCcEEECcCccccccC----ChhccCCCCCCEEECcCCcccccCCccCcC
Q 003931          245 NWTELESLQIQNNSFMGNIPPEI---GLLTKLQYLFLYRNNFSGPI----PSEIEKLTSLENLDLSGNQLSGTIPPTLWN  317 (785)
Q Consensus       245 ~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  317 (785)
                      .+++|++|++.+|.+.+..+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.+++..-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            35666666666666553222221   24567777777777765532    223345677788888777776443222322


Q ss_pred             -CCCCCEEEccccc
Q 003931          318 -LTNLLSLQLFSNN  330 (785)
Q Consensus       318 -l~~L~~L~L~~n~  330 (785)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=4.2e-09  Score=109.82  Aligned_cols=84  Identities=19%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CCCCCcEEECcCccccccCChhcc---CCCCCCEEECcCCccccc----CCccCcCCCCCCEEEcccccccCCCCCCCCC
Q 003931          269 LLTKLQYLFLYRNNFSGPIPSEIE---KLTSLENLDLSGNQLSGT----IPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS  341 (785)
Q Consensus       269 ~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  341 (785)
                      .+++|++|+|.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            467888888888877643333332   467888888888887753    2333345678888888888765322111221


Q ss_pred             -CCCCCEEEccCCc
Q 003931          342 -MASLVAFDVNTNQ  354 (785)
Q Consensus       342 -l~~L~~L~l~~n~  354 (785)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             1  3557777665

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.70  E-value=6.2e-09  Score=108.05  Aligned_cols=94  Identities=29%  Similarity=0.354  Sum_probs=69.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc---------hhhhccC---cccccccccCCCCCCCchhHHHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---------LITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTIN  737 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---------~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~  737 (785)
                      +|.......+.++|||||||++.|++||+.|..         ...|...   .....+++|+.+....  ..+....+.+
T Consensus       210 PE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  287 (321)
T 2qkw_B          210 PEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKI--RPESLRKFGD  287 (321)
T ss_dssp             HHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCS--CHHHHHHHHH
T ss_pred             HHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcccc--CHHHHHHHHH
Confidence            465556778999999999999999999999853         2233221   2334566676654321  2344556778


Q ss_pred             HHhhcCCCCCCCCCChHHHHHHHHhccc
Q 003931          738 VALACTSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       738 ial~C~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++..|.+.+|++||+|.||++.|+.+..
T Consensus       288 li~~~l~~dP~~Rps~~ell~~L~~~l~  315 (321)
T 2qkw_B          288 TAVKCLALSSEDRPSMGDVLWKLEYALR  315 (321)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence            8999999999999999999999987643

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.58  E-value=2e-08  Score=103.35  Aligned_cols=86  Identities=28%  Similarity=0.432  Sum_probs=61.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch-------hhhcc---C-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL-------ITSLS---G-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~-------~~~~~---~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      ..+.++||||||++++|++||+.|.+-       ..+..   . .....+.+++.+...   .......+.++...|++.
T Consensus       210 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~  286 (307)
T 2nru_A          210 EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDA---DSTSVEAMYSVASQCLHE  286 (307)
T ss_dssp             EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCC---CHHHHHHHHHHHHHHTCS
T ss_pred             CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhcccccccc---chHHHHHHHHHHHHHcCC
Confidence            478899999999999999999999641       11111   1 122344555555332   223344567889999999


Q ss_pred             CCCCCCChHHHHHHHHhccc
Q 003931          746 TPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      +|++||+|.+|++.|+++.+
T Consensus       287 ~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          287 KKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             STTTSCCHHHHHHHHHHHC-
T ss_pred             CcccCcCHHHHHHHHHHHhc
Confidence            99999999999999998865

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=98.40  E-value=6.6e-08  Score=99.68  Aligned_cols=95  Identities=22%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC--cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.++|||||||++.|++||+.|..-......  ........+........      ..+.++...|.+.+|
T Consensus       191 PE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dP  264 (310)
T 3s95_A          191 PEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCP------PSFFPITVRCCDLDP  264 (310)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCC------TTHHHHHHHHTCSSG
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCC------HHHHHHHHHHccCCh
Confidence            3555556778999999999999999999988531100000  00111111111111100      124567789999999


Q ss_pred             CCCCChHHHHHHHHhcccccCCC
Q 003931          748 DTRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      ++||+|.||+++|++++......
T Consensus       265 ~~Rps~~~l~~~L~~l~~~~~~~  287 (310)
T 3s95_A          265 EKRPSFVKLEHWLETLRMHLAGH  287 (310)
T ss_dssp             GGSCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhCcCHHHHHHHHHHHHHhccCc
Confidence            99999999999999987765443

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=96.94  Aligned_cols=87  Identities=25%  Similarity=0.358  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchh-------hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI-------TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~-------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++||+.|.+-.       .|......     .+....   ...   ..+.++...|
T Consensus       172 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~---~~l~~li~~~  240 (307)
T 2eva_A          172 PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT-----RPPLIK---NLP---KPIESLMTRC  240 (307)
T ss_dssp             HHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC-----CCCCBT---TCC---HHHHHHHHHH
T ss_pred             hhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC-----CCCccc---ccC---HHHHHHHHHH
Confidence            35555567789999999999999999999995411       01000000     011111   111   1244667889


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      .+.+|++||+|.||+++|+.+...+
T Consensus       241 l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          241 WSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             hcCChhhCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999886654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=98.39  E-value=3.9e-08  Score=101.96  Aligned_cols=90  Identities=12%  Similarity=0.106  Sum_probs=57.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCch---------hhhccCcccc--------cccccCCCCCCCchhHHHHHHHHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGEL---------ITSLSGELFL--------KDVLDQRLPPPTGQLAEAVVLTINV  738 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~---------~~~~~~~~~~--------~~~~d~~l~~~~~~~~~~~~~~~~i  738 (785)
                      ...+.++|||||||++.|++||+.|.+-         ..........        .....+.+... .....+...+.++
T Consensus       213 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l  291 (322)
T 3soc_A          213 RDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDY-WQKHAGMAMLCET  291 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHH
T ss_pred             cCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCcccc-ccccchHHHHHHH
Confidence            4567889999999999999999998531         0000000000        01111111110 0111234456788


Q ss_pred             HhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          739 ALACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ...|.+.+|++||+|.||+++|++++..
T Consensus       292 i~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          292 IEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            8999999999999999999999988653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=98.39  E-value=4.6e-08  Score=101.67  Aligned_cols=89  Identities=24%  Similarity=0.337  Sum_probs=58.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+|||||||+++|++| |+.|.+-..    .....+.+.........  ..+...+.+++..|++.+|+
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~  261 (327)
T 3poz_A          188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP----ASEISSILEKGERLPQP--PICTIDVYMIMVKCWMIDAD  261 (327)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----GGGHHHHHHTTCCCCCC--TTBCHHHHHHHHHHTCSCGG
T ss_pred             hHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC----HHHHHHHHHcCCCCCCC--ccCCHHHHHHHHHHcCCChh
Confidence            466666778999999999999999999 999954110    00111111111100000  01112355778899999999


Q ss_pred             CCCChHHHHHHHHhcc
Q 003931          749 TRPSMRFVAQELSAKT  764 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~  764 (785)
                      +||+|.||+++|+++.
T Consensus       262 ~Rps~~ell~~l~~~~  277 (327)
T 3poz_A          262 SRPKFRELIIEFSKMA  277 (327)
T ss_dssp             GSCCHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHH
Confidence            9999999999998764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.38  E-value=1.8e-08  Score=103.14  Aligned_cols=101  Identities=13%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++|||||||++.|++||+.|.+-............+.......+.... ...-..+.++...|.+.+|+
T Consensus       184 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  263 (296)
T 3uzp_A          184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD  263 (296)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTT
T ss_pred             hhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcC
Confidence            45555566788999999999999999999995311110000000011110000000000 00012355678899999999


Q ss_pred             CCCChHHHHHHHHhcccccCCC
Q 003931          749 TRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      +||++.+|++.|+++.......
T Consensus       264 ~Rps~~~l~~~l~~~~~~~~~~  285 (296)
T 3uzp_A          264 DKPDYSYLRQLFRNLFHRQGFS  285 (296)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhcCCc
Confidence            9999999999999886654443

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=98.37  E-value=8.4e-08  Score=98.66  Aligned_cols=91  Identities=22%  Similarity=0.350  Sum_probs=57.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|.......+.++|||||||++.|++||+.|.+-      ...+...     .-...+..   ....   .+.++...|.
T Consensus       208 PE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~---~l~~li~~~l  276 (309)
T 3p86_A          208 PEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFK-----CKRLEIPR---NLNP---QVAAIIEGCW  276 (309)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHS-----CCCCCCCT---TSCH---HHHHHHHHHT
T ss_pred             hhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhc-----CCCCCCCc---cCCH---HHHHHHHHHc
Confidence            3555556678999999999999999999999541      1111000     00011111   1111   2446677899


Q ss_pred             CCCCCCCCChHHHHHHHHhcccccCCCC
Q 003931          744 STTPDTRPSMRFVAQELSAKTQAYLPEP  771 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~~~~~~~  771 (785)
                      +.+|++||++.+|++.|+.+.....+++
T Consensus       277 ~~dP~~Rps~~~ll~~L~~~~~~~~p~~  304 (309)
T 3p86_A          277 TNEPWKRPSFATIMDLLRPLIKSAVPPP  304 (309)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHC------
T ss_pred             cCChhhCcCHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999998876654443

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.36  E-value=3e-08  Score=104.78  Aligned_cols=93  Identities=11%  Similarity=0.084  Sum_probs=61.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-------hhhhccC--cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL  740 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial  740 (785)
                      +|+......+.++|||||||+++||+||+.|.+       ++.+...  .....+++|+.+...  ..   -..+.++..
T Consensus       230 PE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~li~  304 (364)
T 3op5_A          230 IDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAA--NA---PGEIAKYME  304 (364)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTT--CC---CHHHHHHHH
T ss_pred             HHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccc--cC---HHHHHHHHH
Confidence            355556667899999999999999999999964       1111111  112233344333211  00   123456677


Q ss_pred             hcCCCCCCCCCChHHHHHHHHhccccc
Q 003931          741 ACTSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      .|.+.+|++||+|.+|++.|+++-...
T Consensus       305 ~cl~~~p~~RP~~~~l~~~l~~~~~~~  331 (364)
T 3op5_A          305 TVKLLDYTEKPLYENLRDILLQGLKAI  331 (364)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence            899999999999999999998775543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=98.35  E-value=2.6e-08  Score=103.09  Aligned_cols=100  Identities=19%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchh--------hhccC---cccccccccCCCCCCCchhHHHHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI--------TSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTINV  738 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~--------~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~i  738 (785)
                      +|.......+.++||||||++++|++||+.|....        .+...   .....+.++.........  ..-..+.++
T Consensus       206 PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~l  283 (318)
T 3lxp_A          206 PECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPD--KCPAEVYHL  283 (318)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCT--TCCHHHHHH
T ss_pred             hHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCc--cccHHHHHH
Confidence            45555667888999999999999999999996411        11100   001112222211110000  111235567


Q ss_pred             HhhcCCCCCCCCCChHHHHHHHHhcccccCCCC
Q 003931          739 ALACTSTTPDTRPSMRFVAQELSAKTQAYLPEP  771 (785)
Q Consensus       739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~~~~~~  771 (785)
                      ...|.+.+|++||+|.||+++|+++.+.+..++
T Consensus       284 i~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~~  316 (318)
T 3lxp_A          284 MKNCWETEASFRPTFENLIPILKTVHEKYQGQA  316 (318)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHcCCCcccCcCHHHHHHHHHHHHHhhccCC
Confidence            789999999999999999999999988765544

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=98.35  E-value=1.8e-07  Score=95.86  Aligned_cols=87  Identities=20%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccC-----CCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ-----RLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~-----~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      +|.-.....+.++|||||||++.||+||+.|..-...   ......+...     .+..   ....   .+.++...|.+
T Consensus       225 PE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~---~~s~---~~~~li~~~L~  295 (336)
T 4g3f_A          225 PEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR---GPLCLKIASEPPPIREIPP---SCAP---LTAQAIQEGLR  295 (336)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC---SCCHHHHHHSCCGGGGSCT---TSCH---HHHHHHHHHTC
T ss_pred             HHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH---HHHHHHHHcCCCCchhcCc---cCCH---HHHHHHHHHcc
Confidence            4665666788999999999999999999999530000   0000001100     1111   1111   23355678999


Q ss_pred             CCCCCCCChHHHHHHHHhccc
Q 003931          745 TTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       745 ~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+|++||++.|+.+.|....+
T Consensus       296 ~dP~~R~sa~el~~~l~~~l~  316 (336)
T 4g3f_A          296 KEPVHRASAMELRRKVGKALQ  316 (336)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCHhHCcCHHHHHHHHHHHHh
Confidence            999999999999988866543

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=98.34  E-value=6.2e-08  Score=102.79  Aligned_cols=89  Identities=25%  Similarity=0.393  Sum_probs=58.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|.......+.|+|||||||++.|++| |+.|..-...    ....+.++.  ++..+. .   +-..+.++...|.+.+
T Consensus       284 PE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~-~---~~~~l~~li~~cl~~d  355 (377)
T 3cbl_A          284 PEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN----QQTREFVEKGGRLPCPE-L---CPDAVFRLMEQCWAYE  355 (377)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH----HHHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSS
T ss_pred             HhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCCC
Confidence            455556778999999999999999999 9988531100    000011111  111010 1   1123456778999999


Q ss_pred             CCCCCChHHHHHHHHhcccc
Q 003931          747 PDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      |++||+|.+|+++|++++..
T Consensus       356 P~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          356 PGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             GGGSCCHHHHHHHHHHHHHH
T ss_pred             chhCcCHHHHHHHHHHHHhh
Confidence            99999999999999998654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.34  E-value=3e-08  Score=101.52  Aligned_cols=99  Identities=13%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++|||||||++.|++||+.|..-............+.......+.... ...-..+.++...|.+.+|+
T Consensus       184 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  263 (296)
T 4hgt_A          184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD  263 (296)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTT
T ss_pred             hHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCC
Confidence            35555556788999999999999999999995311100000000011110000000000 00012355677889999999


Q ss_pred             CCCChHHHHHHHHhcccccC
Q 003931          749 TRPSMRFVAQELSAKTQAYL  768 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~~  768 (785)
                      +||++.+|++.|+++.....
T Consensus       264 ~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          264 DKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhC
Confidence            99999999999998766543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=98.32  E-value=4.1e-08  Score=103.88  Aligned_cols=90  Identities=21%  Similarity=0.315  Sum_probs=57.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||+++|++| |+.|..-.    ......+.++.....+..  ..+-..+.++...|.+.+|+
T Consensus       219 PE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~----~~~~~~~~i~~~~~~~~~--~~~~~~l~~li~~cl~~dp~  292 (373)
T 2qol_A          219 PEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM----SNQDVIKAVDEGYRLPPP--MDCPAALYQLMLDCWQKDRN  292 (373)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC----CHHHHHHHHHTTEECCCC--TTCBHHHHHHHHHHTCSSGG
T ss_pred             hhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC----CHHHHHHHHHcCCCCCCC--ccccHHHHHHHHHHhCcChh
Confidence            466666778899999999999999998 99995310    000001111111100000  01112356778899999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||+|.+|+++|+++..
T Consensus       293 ~RPs~~~i~~~L~~~~~  309 (373)
T 2qol_A          293 NRPKFEQIVSILDKLIR  309 (373)
T ss_dssp             GSCCHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHh
Confidence            99999999999987743

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=98.31  E-value=6e-08  Score=99.14  Aligned_cols=96  Identities=19%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCcc-------cccccccCCCCCCCchhHHHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGEL-------FLKDVLDQRLPPPTGQLAEAVVLTIN  737 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~  737 (785)
                      +|.......+.++|||||||++.|++||+.|...     ..+.....       ...+.+......+..  ..+-..+.+
T Consensus       186 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~  263 (295)
T 3ugc_A          186 PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRP--DGCPDEIYM  263 (295)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCC--TTCCHHHHH
T ss_pred             cHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCC--cCcCHHHHH
Confidence            3555566778999999999999999999988641     11111100       011111111100000  011123556


Q ss_pred             HHhhcCCCCCCCCCChHHHHHHHHhccccc
Q 003931          738 VALACTSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       738 ial~C~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      +...|.+.+|++||+|.||+++|+++....
T Consensus       264 li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          264 IMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            788999999999999999999999987653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.30  E-value=2.3e-08  Score=102.48  Aligned_cols=101  Identities=10%  Similarity=0.077  Sum_probs=60.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCch-hHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQ-LAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~-~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.-.....+.++|||||||++.|++||+.|..-............+........... ....-..+.++...|.+.+|+
T Consensus       187 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  266 (298)
T 1csn_A          187 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFD  266 (298)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTT
T ss_pred             chhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcc
Confidence            3555556678899999999999999999999531100000000000000000000000 000012345677889999999


Q ss_pred             CCCChHHHHHHHHhcccccCCC
Q 003931          749 TRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      +||++.+|++.|+++.......
T Consensus       267 ~RP~~~~l~~~l~~~~~~~~~~  288 (298)
T 1csn_A          267 ATPDYDYLQGLFSKVLERLNTT  288 (298)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999887654443

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.29  E-value=1.2e-07  Score=103.20  Aligned_cols=86  Identities=28%  Similarity=0.466  Sum_probs=59.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.|+|||||||++.|++| |+.|..      +...+...        .++..+. .   +-..+.++...|
T Consensus       354 PE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~--------~~~~~~~-~---~~~~l~~li~~c  421 (454)
T 1qcf_A          354 PEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG--------YRMPRPE-N---CPEELYNIMMRC  421 (454)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHT--------CCCCCCT-T---SCHHHHHHHHHH
T ss_pred             HHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC--------CCCCCCC-C---CCHHHHHHHHHH
Confidence            355556678899999999999999999 999853      11111100        0111111 1   112355678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      .+.+|++||+|.+|+++|+++....
T Consensus       422 l~~dp~~RPt~~~i~~~L~~~~~~~  446 (454)
T 1qcf_A          422 WKNRPEERPTFEYIQSVLDDFYTAT  446 (454)
T ss_dssp             TCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred             ccCChhHCcCHHHHHHHHHHHHhcc
Confidence            9999999999999999999986643

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=98.29  E-value=2.3e-07  Score=95.04  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             ccccccceeeeehhhhhhhhC----------CCCCchhhhccCcc---ccc-----ccccCCCCCCCchhHHHHHHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMG----------RHPGELITSLSGEL---FLK-----DVLDQRLPPPTGQLAEAVVLTINV  738 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltg----------k~p~~~~~~~~~~~---~~~-----~~~d~~l~~~~~~~~~~~~~~~~i  738 (785)
                      ..+.++|||||||++.|++||          +.|..  .......   ...     +...+.+... .........+.++
T Consensus       199 ~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l  275 (301)
T 3q4u_A          199 DSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFY--DVVPNDPSFEDMRKVVCVDQQRPNIPNR-WFSDPTLTSLAKL  275 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT--TTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHHHHhhhcCcccccccccccc--ccCCCCcchhhhhHHHhccCCCCCCChh-hccCccHHHHHHH
Confidence            456799999999999999999          44421  0000000   000     1111111110 0112334557788


Q ss_pred             HhhcCCCCCCCCCChHHHHHHHHhc
Q 003931          739 ALACTSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       739 al~C~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ...|.+.+|++||+|.||+++|+++
T Consensus       276 i~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          276 MKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHhhcChhhCCCHHHHHHHHhcc
Confidence            9999999999999999999999876

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=98.26  E-value=3.1e-07  Score=92.50  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||++++|++||+.|..-...... ......-.......   ..   -..+.++...|.+.+|+
T Consensus       183 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~li~~~l~~~p~  256 (271)
T 3dtc_A          183 PEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPS---TC---PEPFAKLMEDCWNPDPH  256 (271)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCT---TC---CHHHHHHHHHHTCSSGG
T ss_pred             HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCc---cc---CHHHHHHHHHHhcCCcc
Confidence            3555556678899999999999999999999531000000 00000000111111   11   12345677889999999


Q ss_pred             CCCChHHHHHHHHhc
Q 003931          749 TRPSMRFVAQELSAK  763 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~  763 (785)
                      +||++.||++.|+++
T Consensus       257 ~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          257 SRPSFTNILDQLTTI  271 (271)
T ss_dssp             GSCCHHHHHHHHHC-
T ss_pred             cCcCHHHHHHHHhcC
Confidence            999999999999764

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.25  E-value=2.3e-07  Score=96.74  Aligned_cols=95  Identities=11%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhh-----------ccCccc--------ccccccCCCCCCCchhHHHHHHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITS-----------LSGELF--------LKDVLDQRLPPPTGQLAEAVVLTI  736 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~-----------~~~~~~--------~~~~~d~~l~~~~~~~~~~~~~~~  736 (785)
                      ...+.++|||||||++.||+||+.|..-...           ......        ..+...+.+.............+.
T Consensus       210 ~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  289 (336)
T 3g2f_A          210 ESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLK  289 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHH
Confidence            4567899999999999999999877320000           000000        001111111111111112333567


Q ss_pred             HHHhhcCCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931          737 NVALACTSTTPDTRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       737 ~ial~C~~~~p~~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      ++...|.+.+|++||++.||+++|+++...+...
T Consensus       290 ~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~  323 (336)
T 3g2f_A          290 ETIEDCWDQDAEARLTAQXAEERMAELMMIWERN  323 (336)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred             HHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence            8889999999999999999999999987765443

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=98.25  E-value=2.8e-07  Score=92.67  Aligned_cols=88  Identities=19%  Similarity=0.359  Sum_probs=57.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhcc---CcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLS---GELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|.......+.++||||||+++.|++| |+.|.+......   ..........+..     .. +   .+.++...|.+.
T Consensus       174 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~---~l~~li~~~l~~  244 (268)
T 3sxs_A          174 PEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHL-----AS-D---TIYQIMYSCWHE  244 (268)
T ss_dssp             HHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTT-----SC-H---HHHHHHHHTTCS
T ss_pred             HHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCc-----Ch-H---HHHHHHHHHcCC
Confidence            455556678899999999999999999 999964111000   0000000111111     11 1   245677889999


Q ss_pred             CCCCCCChHHHHHHHHhcccc
Q 003931          746 TPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      +|++||++.||++.|+.+++.
T Consensus       245 ~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          245 LPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             SGGGSCCHHHHHHHHGGGCC-
T ss_pred             ChhhCcCHHHHHHHHHHhhhc
Confidence            999999999999999988654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.24  E-value=3.8e-07  Score=91.70  Aligned_cols=72  Identities=17%  Similarity=0.301  Sum_probs=46.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      .+.+.|+|||||||++.||+||+.|..       +...+.... ....+++..       ..   .+.++...|.+.+|+
T Consensus       204 ~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~-~~~~~~~~~-------~~---~~~~li~~~L~~dP~  272 (290)
T 3fpq_A          204 EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGV-KPASFDKVA-------IP---EVKEIIEGCIRQNKD  272 (290)
T ss_dssp             TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTC-CCGGGGGCC-------CH---HHHHHHHHHSCSSGG
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCC-CCCCCCccC-------CH---HHHHHHHHHccCChh
Confidence            357899999999999999999999953       111111100 000011111       01   234567789999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +|||+.|+.+
T Consensus       273 ~R~s~~e~l~  282 (290)
T 3fpq_A          273 ERYSIKDLLN  282 (290)
T ss_dssp             GSCCHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999853

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=98.23  E-value=2.3e-07  Score=96.99  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=56.0

Q ss_pred             ccccccceeeeehhhhhhhhCC----------CCCchhhhccCc----ccc----cccccCCCCCCCchhHHHHHHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGR----------HPGELITSLSGE----LFL----KDVLDQRLPPPTGQLAEAVVLTINV  738 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk----------~p~~~~~~~~~~----~~~----~~~~d~~l~~~~~~~~~~~~~~~~i  738 (785)
                      ..+.++|||||||++.||+||+          .|..  ......    ...    .....+.+... ....++...+.++
T Consensus       233 ~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l  309 (342)
T 1b6c_B          233 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY--DLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKI  309 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT--TTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGTSHHHHHHHHH
T ss_pred             ccCCcccHHHHHHHHHHHHhccCcCCcccccccCcc--ccCcCcccHHHHHHHHHHHHhCCCCccc-ccchhHHHHHHHH
Confidence            3457899999999999999994          4421  000000    000    11122222110 0112344567788


Q ss_pred             HhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          739 ALACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ...|++.+|++||+|.||++.|+++.++
T Consensus       310 i~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          310 MRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             HHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=3.3e-07  Score=90.26  Aligned_cols=64  Identities=31%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             hccccCCeeecccCcccc--CCCcccccCCCCCeecccCCcccCcCCcccccCC--CCCeEecCCCcCcc
Q 003931          509 GNLTRLGVLSLDSNELTG--KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT--ELAYLDLSNNKLTG  574 (785)
Q Consensus       509 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~  574 (785)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  .|++|++++|.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            344555555555555554  2233444555555555555555432  1122222  44444444444443

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.23  E-value=2.3e-07  Score=100.89  Aligned_cols=89  Identities=26%  Similarity=0.434  Sum_probs=60.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.|+|||||||++.|++| |+.|..      ....+....        ++..+. .   +-..+.++...|
T Consensus       350 PE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~--------~~~~~~-~---~~~~l~~li~~c  417 (452)
T 1fmk_A          350 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY--------RMPCPP-E---CPESLHDLMCQC  417 (452)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC--------CCCCCT-T---SCHHHHHHHHHH
T ss_pred             HhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-C---CCHHHHHHHHHH
Confidence            455556678899999999999999999 898853      111111100        111010 1   112345677899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      .+.+|++||+|.+|+++|+++.....++
T Consensus       418 l~~dP~~Rpt~~~l~~~L~~~~~~~~~~  445 (452)
T 1fmk_A          418 WRKEPEERPTFEYLQAFLEDYFTSTEPQ  445 (452)
T ss_dssp             TCSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred             ccCChhhCcCHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999886654443

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.23  E-value=1.2e-07  Score=99.32  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch--hh-----hccC--cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL--IT-----SLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL  740 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~--~~-----~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial  740 (785)
                      +|+......+.++|||||||+++|++||+.|.+-  ..     ....  .....+.+......  ..   .-..+.++..
T Consensus       229 PE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~~li~  303 (345)
T 2v62_A          229 LDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPS--GS---SCCEIAQFLV  303 (345)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCT--TS---CCHHHHHHHH
T ss_pred             HHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccc--cc---cHHHHHHHHH
Confidence            4555566778999999999999999999999630  00     0000  00000000000000  00   0113556677


Q ss_pred             hcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          741 ACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .|.+.+|++||+|.+|++.|++....
T Consensus       304 ~~l~~dp~~Rps~~~l~~~L~~~~~~  329 (345)
T 2v62_A          304 CAHSLAYDEKPNYQALKKILNPHGIP  329 (345)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHCTTCCC
T ss_pred             HHhhcCcccCCCHHHHHHHHhccCCc
Confidence            99999999999999999999887553

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.22  E-value=1.5e-07  Score=98.86  Aligned_cols=94  Identities=13%  Similarity=-0.003  Sum_probs=60.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhh--------hccC-cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELIT--------SLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL  740 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~--------~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial  740 (785)
                      +|+......+.++|||||||+++|++||+.|..-..        .... .....+..++....  ....   ..+.++..
T Consensus       237 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~l~~li~  311 (352)
T 2jii_A          237 MDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHW--IRPS---ETLQKYLK  311 (352)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCE--ECCC---HHHHHHHH
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhcccc--CCCc---HHHHHHHH
Confidence            355555677899999999999999999999964111        0000 00111111111100  0001   23456677


Q ss_pred             hcCCCCCCCCCChHHHHHHHHhcccccC
Q 003931          741 ACTSTTPDTRPSMRFVAQELSAKTQAYL  768 (785)
Q Consensus       741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~~~  768 (785)
                      .|.+.+|++||+|.+|+++|+++.....
T Consensus       312 ~~l~~dp~~Rps~~~l~~~L~~~~~~~~  339 (352)
T 2jii_A          312 VVMALTYEEKPPYAMLRNNLEALLQDLR  339 (352)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence            8999999999999999999998866543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=98.22  E-value=1.9e-07  Score=96.85  Aligned_cols=85  Identities=25%  Similarity=0.323  Sum_probs=58.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||+++|++| |+.|..      +...+...      ..+....   .   .-..+.++...|
T Consensus       223 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~------~~~~~~~---~---~~~~l~~li~~~  290 (325)
T 3kul_A          223 PEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG------YRLPAPM---G---CPHALHQLMLDC  290 (325)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT------CCCCCCT---T---CCHHHHHHHHHH
T ss_pred             HhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcC------CCCCCCC---C---cCHHHHHHHHHH
Confidence            455556678899999999999999999 999953      11111110      0000100   1   112345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .+.+|++||+|.||+++|+.+...
T Consensus       291 l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          291 WHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ccCChhhCcCHHHHHHHHHHHHhC
Confidence            999999999999999999988654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.22  E-value=3.4e-07  Score=94.66  Aligned_cols=87  Identities=14%  Similarity=0.184  Sum_probs=52.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++||||||+++.|++||+.|.+-...-........-..+.....  ...   ..+.++...|.+.+|++||++.+
T Consensus       218 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~li~~~l~~~p~~Rpt~~~  292 (319)
T 2y4i_B          218 LPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQI--GMG---KEISDILLFCWAFEQEERPTFTK  292 (319)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCS--SCC---TTHHHHHHHHHCSSTTTSCCHHH
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcC--CCC---HHHHHHHHHHhcCChhhCcCHHH
Confidence            3467899999999999999999999541000000000000011111110  000   12446778899999999999999


Q ss_pred             HHHHHHhccccc
Q 003931          756 VAQELSAKTQAY  767 (785)
Q Consensus       756 vv~~l~~~~~~~  767 (785)
                      |+++|+++....
T Consensus       293 l~~~l~~l~~~~  304 (319)
T 2y4i_B          293 LMDMLEKLPKRN  304 (319)
T ss_dssp             HHHHHTTC----
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=2.2e-07  Score=87.21  Aligned_cols=118  Identities=9%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             cccccCCCCCCEEeCCCC-CCCCCC----ccccCCCCCCcEEEccCCCCcccC----CccCCCCCCccEEECCCCCCccc
Q 003931           22 PFQLSSLRKVRYLDLGGN-FLETPD----WSKFSSMPSLTHLGLYLNELTLEF----PSFILTCRNLTYLDLSLNKLSGL   92 (785)
Q Consensus        22 ~~~~~~l~~L~~L~L~~n-~i~~~~----~~~f~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~   92 (785)
                      ...+...++|++|+|++| .+....    ..++...++|++|+|++|.+....    ...+...+.|++|+|++|.|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345677888888888888 776432    234566788888888888887532    33445567889999999988743


Q ss_pred             CC---hhhhcCCCCCcEEEC--CCCCCcccC----CccccCCCCCcEEEcCCCccc
Q 003931           93 IP---ERLFTNLGKLEYLNL--TENQFQGKL----SPNVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus        93 ~~---~~~f~~l~~L~~L~L--s~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~  139 (785)
                      -.   ...+...+.|++|+|  ++|.+....    ...+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            11   122356778999999  778887542    344556688999999998875

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.20  E-value=3.1e-07  Score=92.37  Aligned_cols=91  Identities=22%  Similarity=0.296  Sum_probs=57.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++||||+|+++.|++| |+.|.+-...........+-..+.....  . .   ..+.++...|.+.+|+
T Consensus       176 PE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~li~~~l~~~p~  249 (269)
T 4hcu_A          176 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRL--A-S---THVYQIMNHCWRERPE  249 (269)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTT--S-C---HHHHHHHHHHTCSSGG
T ss_pred             HHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCc--C-C---HHHHHHHHHHccCCcc
Confidence            455556678889999999999999999 8988541100000000000000111000  1 1   1245667889999999


Q ss_pred             CCCChHHHHHHHHhcccc
Q 003931          749 TRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~  766 (785)
                      +||++.||++.|+++.++
T Consensus       250 ~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          250 DRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             GSCCHHHHHHHHHHHHHC
T ss_pred             cCcCHHHHHHHHHHHHHc
Confidence            999999999999988653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=98.20  E-value=3.8e-07  Score=91.77  Aligned_cols=81  Identities=17%  Similarity=0.320  Sum_probs=51.4

Q ss_pred             ccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      +.++||||||+++.|++||+.|.+-...... .....+-..+.....   ...   .+.++...|.+.+|++||++.||+
T Consensus       189 ~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~li~~~l~~~p~~Rps~~~il  262 (271)
T 3kmu_A          189 RRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPG---ISP---HVSKLMKICMNEDPAKRPKFDMIV  262 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTT---CCH---HHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCC---CCH---HHHHHHHHHcCCChhhCcCHHHHH
Confidence            3479999999999999999999541000000 000001111111111   111   244667789999999999999999


Q ss_pred             HHHHhccc
Q 003931          758 QELSAKTQ  765 (785)
Q Consensus       758 ~~l~~~~~  765 (785)
                      +.|+++.+
T Consensus       263 ~~L~~l~~  270 (271)
T 3kmu_A          263 PILEKMQD  270 (271)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhhc
Confidence            99998864

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=98.19  E-value=4.8e-07  Score=93.10  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=59.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      +|.......+.++||||||+++.|++||+.|..-     ......   ....-.+....  ....+   .+.++...|.+
T Consensus       205 PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~---~l~~li~~~l~  276 (310)
T 2wqm_A          205 PERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKK---IEQCDYPPLPS--DHYSE---ELRQLVNMCIN  276 (310)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHH---HHTTCSCCCCT--TTSCH---HHHHHHHHHTC
T ss_pred             hHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHH---hhcccCCCCcc--cccCH---HHHHHHHHHcC
Confidence            3554556678899999999999999999999531     000000   00000011110  01111   24466778999


Q ss_pred             CCCCCCCChHHHHHHHHhcccccCCCC
Q 003931          745 TTPDTRPSMRFVAQELSAKTQAYLPEP  771 (785)
Q Consensus       745 ~~p~~Rp~m~~vv~~l~~~~~~~~~~~  771 (785)
                      .+|++||++.+|++.|++++.....++
T Consensus       277 ~dp~~Rps~~~il~~l~~l~~~~~~~~  303 (310)
T 2wqm_A          277 PDPEKRPDVTYVYDVAKRMHACTASSL  303 (310)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred             CChhhCCCHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999877654443

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=98.19  E-value=4.2e-07  Score=91.94  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||+++.|++| |+.|..-............-..+....   ...   ..+.++.-.|.+.+|+
T Consensus       183 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~~p~  256 (278)
T 1byg_A          183 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD---GCP---PAVYEVMKNCWHLDAA  256 (278)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCT---TCC---HHHHHHHHHHTCSSGG
T ss_pred             HHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcc---cCC---HHHHHHHHHHhcCChh
Confidence            355455667889999999999999999 998853110000000000001111111   111   2244567789999999


Q ss_pred             CCCChHHHHHHHHhcccc
Q 003931          749 TRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~  766 (785)
                      +||++.||++.|++++..
T Consensus       257 ~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          257 MRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             GSCCHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHhh
Confidence            999999999999998764

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.19  E-value=5.8e-07  Score=91.45  Aligned_cols=83  Identities=22%  Similarity=0.353  Sum_probs=54.3

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      ....+.++||||||++++|++||+.|.+       +...+..     ....+........   +-..+.++...|.+.+|
T Consensus       199 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p  270 (289)
T 3og7_A          199 SNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGR-----GSLSPDLSKVRSN---CPKRMKRLMAECLKKKR  270 (289)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHH-----TSCCCCTTSSCTT---SCHHHHHHHHHHTCSSG
T ss_pred             CCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcc-----cccCcchhhcccc---CCHHHHHHHHHHccCCh
Confidence            3456779999999999999999999953       1111110     0111111110001   11234567788999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||++.||+++|+++..
T Consensus       271 ~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          271 DERPSFPRILAEIEELAR  288 (289)
T ss_dssp             GGSCCHHHHHHHHHHTTC
T ss_pred             hhCCCHHHHHHHHHHHhh
Confidence            999999999999998754

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=98.18  E-value=1.8e-07  Score=97.21  Aligned_cols=93  Identities=22%  Similarity=0.329  Sum_probs=60.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-----hhhhccCcc-------cccccccCC--CCCCCchhHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-----LITSLSGEL-------FLKDVLDQR--LPPPTGQLAEAVVLT  735 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-----~~~~~~~~~-------~~~~~~d~~--l~~~~~~~~~~~~~~  735 (785)
                      +|.......+.++||||||+++.|++||+.|..     +........       ...+.+...  ...+. .   .-..+
T Consensus       217 PE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l  292 (326)
T 2w1i_A          217 PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-G---CPDEI  292 (326)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCT-T---CCHHH
T ss_pred             chhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCC-c---ccHHH
Confidence            355555677899999999999999999998854     111111100       011111111  11111 1   11235


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          736 INVALACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .++...|.+.+|++||++.||+++|++++..
T Consensus       293 ~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          293 YMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            5677899999999999999999999988764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.18  E-value=2.4e-07  Score=100.70  Aligned_cols=90  Identities=22%  Similarity=0.317  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.|+|||||||++.||+| |+.|..-...   ......+... ++..+. .   +-..+.++...|++.+|
T Consensus       355 PE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~---~~~~~~i~~~~~~~~p~-~---~~~~l~~li~~cl~~dp  427 (450)
T 1k9a_A          355 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL---KDVVPRVEKGYKMDAPD-G---CPPAVYDVMKNCWHLDA  427 (450)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT---TTHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSSG
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHHHcCCCCCCCC-c---CCHHHHHHHHHHcCCCh
Confidence            455556778899999999999999999 9988531100   0000000000 111111 1   11234566788999999


Q ss_pred             CCCCChHHHHHHHHhcccc
Q 003931          748 DTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++||+|.++++.|+++...
T Consensus       428 ~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          428 ATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             GGSCCHHHHHHHHHHHHHT
T ss_pred             hHCcCHHHHHHHHHHHHHh
Confidence            9999999999999988654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=98.18  E-value=3.9e-07  Score=96.82  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=59.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++| |+.|..      +...+....      .+....   ..   -..+.++...|
T Consensus       262 PE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~---~~~l~~li~~~  329 (382)
T 3tt0_A          262 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH------RMDKPS---NC---TNELYMMMRDC  329 (382)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC------CCCCCS---SC---CHHHHHHHHHH
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC------CCCCCc---cC---CHHHHHHHHHH
Confidence            455556678899999999999999999 998854      111111110      011111   11   12345677889


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccccC
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAYL  768 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~  768 (785)
                      .+.+|++||+|.||++.|+++.....
T Consensus       330 l~~dP~~Rps~~ell~~L~~~~~~~~  355 (382)
T 3tt0_A          330 WHAVPSQRPTFKQLVEDLDRIVALTS  355 (382)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred             cCCChhhCcCHHHHHHHHHHHHHHHh
Confidence            99999999999999999998865443

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=98.18  E-value=6.1e-07  Score=93.04  Aligned_cols=83  Identities=22%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.++|||||||+++|++| |+.|.+-      ...+....   ....+..         +-..+.++...|
T Consensus       186 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~li~~~  253 (325)
T 3kex_A          186 LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGE---RLAQPQI---------CTIDVYMVMVKC  253 (325)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTC---BCCCCTT---------BCTTTTHHHHHH
T ss_pred             hHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCC---CCCCCCc---------CcHHHHHHHHHH
Confidence            455556678899999999999999999 9999541      11111100   0000000         001234567789


Q ss_pred             CCCCCCCCCChHHHHHHHHhcc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      .+.+|++||+|.||++.|+++.
T Consensus       254 l~~dp~~Rps~~el~~~l~~~~  275 (325)
T 3kex_A          254 WMIDENIRPTFKELANEFTRMA  275 (325)
T ss_dssp             TCSCTTTSCCHHHHHHHHHHHT
T ss_pred             cCCChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999998764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=98.17  E-value=2.6e-07  Score=95.55  Aligned_cols=87  Identities=17%  Similarity=0.297  Sum_probs=55.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ..+.++|||||||+++|++||+.|.+.....  .......+......+ .....   ..+.++...|.+.+|++||++.|
T Consensus       222 ~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~  296 (317)
T 2buj_A          222 VIDERTDVWSLGCVLYAMMFGEGPYDMVFQK--GDSVALAVQNQLSIPQSPRHS---SALWQLLNSMMTVDPHQRPHIPL  296 (317)
T ss_dssp             EECTHHHHHHHHHHHHHHHHSSCTTHHHHHT--TSCHHHHHHCC--CCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCChhhhhcc--cchhhHHhhccCCCCccccCC---HHHHHHHHHHhhcChhhCCCHHH
Confidence            3578999999999999999999996421110  000000000010000 00111   13456778899999999999999


Q ss_pred             HHHHHHhcccccC
Q 003931          756 VAQELSAKTQAYL  768 (785)
Q Consensus       756 vv~~l~~~~~~~~  768 (785)
                      |++.|+.+.....
T Consensus       297 ll~~L~~~~~~~~  309 (317)
T 2buj_A          297 LLSQLEALQPPAP  309 (317)
T ss_dssp             HHHHHHHTCCCCC
T ss_pred             HHHHhhhcCCCCC
Confidence            9999999876533

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=98.17  E-value=3.9e-07  Score=102.85  Aligned_cols=86  Identities=20%  Similarity=0.282  Sum_probs=59.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.|+|||||||++.||+| |+.|..      +...+....        ++..+. .   +-..+.++...|
T Consensus       508 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~--------~~~~p~-~---~~~~l~~li~~c  575 (613)
T 2ozo_A          508 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK--------RMECPP-E---CPPELYALMSDC  575 (613)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTC--------CCCCCT-T---CCHHHHHHHHHT
T ss_pred             HhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-c---CCHHHHHHHHHH
Confidence            466666788999999999999999998 999953      111111100        111111 1   112355778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      ++.+|++||+|.+|+++|+.+..+.
T Consensus       576 l~~dP~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          576 WIYKWEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             TCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             cCCChhHCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999998875543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.17  E-value=4.3e-07  Score=91.99  Aligned_cols=89  Identities=24%  Similarity=0.313  Sum_probs=56.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++||||||+++.|++| |+.|......   ......+... ....+. ...   ..+.++...|.+.+|
T Consensus       183 PE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~---~~~~~~~~~~~~~~~~~-~~~---~~l~~li~~~l~~~p  255 (281)
T 3cc6_A          183 PESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN---KDVIGVLEKGDRLPKPD-LCP---PVLYTLMTRCWDYDP  255 (281)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG---GGHHHHHHHTCCCCCCT-TCC---HHHHHHHHHHTCSSG
T ss_pred             chhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh---HHHHHHHhcCCCCCCCC-CCC---HHHHHHHHHHccCCc
Confidence            355555677889999999999999999 9999531110   0000000000 000000 111   124566788999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||++.||++.|+++.+
T Consensus       256 ~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          256 SDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             GGSCCHHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHHH
Confidence            999999999999988754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.17  E-value=4.1e-07  Score=91.32  Aligned_cols=85  Identities=25%  Similarity=0.388  Sum_probs=57.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.++||||||+++.|++| |+.|.+-      ...+...      ..+.....  ..    ..+.++...|
T Consensus       174 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~------~~~~~~~~--~~----~~l~~li~~~  241 (267)
T 3t9t_A          174 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG------FRLYKPRL--AS----THVYQIMNHC  241 (267)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT------CCCCCCTT--SC----HHHHHHHHHH
T ss_pred             hhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcC------CcCCCCcc--Cc----HHHHHHHHHH
Confidence            354455667889999999999999999 8888531      1111100      00011000  11    1245677899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .+.+|++||++.|+++.|+++.++
T Consensus       242 l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          242 WRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ccCChhhCcCHHHHHHHHHHHHhc
Confidence            999999999999999999988653

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.16  E-value=2.1e-07  Score=97.07  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=55.1

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ....+.++|||||||+++|++||+.|.+-..       ..++++....... ....   ..+.++...|.+.+|++||++
T Consensus       227 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~  296 (337)
T 3ll6_A          227 NFPIGEKQDIWALGCILYLLCFRQHPFEDGA-------KLRIVNGKYSIPPHDTQY---TVFHSLIRAMLQVNPEERLSI  296 (337)
T ss_dssp             TSCSSHHHHHHHHHHHHHHHHHSSCCC-------------------CCCCTTCCSS---GGGHHHHHHHSCSSGGGSCCH
T ss_pred             cCCCChHHhHHHHHHHHHHHHhCCCCCcchh-------HHHhhcCcccCCcccccc---hHHHHHHHHHccCChhhCcCH
Confidence            3456789999999999999999999953110       0111111111000 0000   113456788999999999999


Q ss_pred             HHHHHHHHhcccccCCCC
Q 003931          754 RFVAQELSAKTQAYLPEP  771 (785)
Q Consensus       754 ~~vv~~l~~~~~~~~~~~  771 (785)
                      .||++.|.++.......+
T Consensus       297 ~e~l~~l~~~~~~~~~~~  314 (337)
T 3ll6_A          297 AEVVHQLQEIAAARNVNP  314 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHhccCCCC
Confidence            999999998876544443

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=98.16  E-value=5e-07  Score=92.37  Aligned_cols=95  Identities=25%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC-chhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG-ELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||+++.|++||+.|- .-..   .......+.............+   .+.++...|.+.+|+
T Consensus       201 PE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~~p~  274 (298)
T 3f66_A          201 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN---TFDITVYLLQGRRLLQPEYCPD---PLYEVMLKCWHPKAE  274 (298)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC---TTTHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGG
T ss_pred             hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCC---HHHHHHHHhcCCCCCCCccCCH---HHHHHHHHHcCCChh
Confidence            35455567788999999999999999976652 1000   0000000000000000001111   245677889999999


Q ss_pred             CCCChHHHHHHHHhcccccCCC
Q 003931          749 TRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      +||++.||+++|+++...+...
T Consensus       275 ~Rps~~ell~~L~~~~~~~~~~  296 (298)
T 3f66_A          275 MRPSFSELVSRISAIFSTFIGE  296 (298)
T ss_dssp             GSCCHHHHHHHHHHHHHTSCCS
T ss_pred             hCcCHHHHHHHHHHHHHhhccC
Confidence            9999999999999987765543

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=98.16  E-value=1.6e-07  Score=97.49  Aligned_cols=95  Identities=20%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCc------ccccccccCCCCCCCchhHHHHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGE------LFLKDVLDQRLPPPTGQLAEAVVLTINV  738 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~------~~~~~~~d~~l~~~~~~~~~~~~~~~~i  738 (785)
                      +|+......+.++||||||+++.|++||+.|...     .......      ....+.+.........  ...-..+.++
T Consensus       199 PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l  276 (327)
T 3lxl_A          199 PESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAP--PACPAEVHEL  276 (327)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCC--TTCCHHHHHH
T ss_pred             HHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCC--CcccHHHHHH
Confidence            3555566678899999999999999999999541     1110000      0011111111110000  0011234567


Q ss_pred             HhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          739 ALACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ...|.+.+|++||+|.||++.|+++...
T Consensus       277 i~~~l~~dP~~Rps~~ell~~L~~~~~~  304 (327)
T 3lxl_A          277 MKLCWAPSPQDRPSFSALGPQLDMLWSG  304 (327)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            7889999999999999999999987553

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.16  E-value=6.3e-07  Score=93.47  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=54.3

Q ss_pred             cccceeeeehhhhhhhhCCCCCch--------hhhccCcc---cccc-----cccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          680 DKCDVFSFGVVALEVMMGRHPGEL--------ITSLSGEL---FLKD-----VLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       680 ~k~DVYSfGvvlLElltgk~p~~~--------~~~~~~~~---~~~~-----~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      .++|||||||++.||+||+.|.+.        ........   ...+     ...+..... ....++...+.++...|.
T Consensus       231 ~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l  309 (337)
T 3mdy_A          231 IMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNR-WSSDECLRQMGKLMTECW  309 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGSHHHHHHHHHHHHHS
T ss_pred             cccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCcccccc-chhhHHHHHHHHHHHHhh
Confidence            359999999999999999555321        11110000   0011     111111110 011234455778899999


Q ss_pred             CCCCCCCCChHHHHHHHHhcccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      +.+|++||++.||++.|+++.+.
T Consensus       310 ~~dP~~Rps~~ell~~L~~l~~~  332 (337)
T 3mdy_A          310 AHNPASRLTALRVKKTLAKMSES  332 (337)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             hhChhhCCCHHHHHHHHHHHHhh
Confidence            99999999999999999988764

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=98.15  E-value=5.6e-07  Score=91.66  Aligned_cols=83  Identities=22%  Similarity=0.249  Sum_probs=56.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.++||||||+++.|++| |+.|..-      ...+....      .+....   ..   -..+.++...|
T Consensus       189 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~---~~~l~~li~~~  256 (291)
T 1xbb_A          189 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGE------RMGCPA---GC---PREMYDLMNLC  256 (291)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC------CCCCCT---TC---CHHHHHHHHHH
T ss_pred             hHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC------CCCCCC---CC---CHHHHHHHHHH
Confidence            355556677889999999999999999 9999531      11111100      011111   11   12345677889


Q ss_pred             CCCCCCCCCChHHHHHHHHhcc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~  764 (785)
                      .+.+|++||++.||+++|+++-
T Consensus       257 l~~dp~~Rps~~~l~~~L~~~~  278 (291)
T 1xbb_A          257 WTYDVENRPGFAAVELRLRNYY  278 (291)
T ss_dssp             TCSSTTTSCCHHHHHHHHHHHH
T ss_pred             cCCChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999998763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.15  E-value=3.8e-07  Score=85.61  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             ccccCCCCCeEec--CCCcCccC----CCccccccCCCcEEeCCCCcCc
Q 003931          555 SISNLTELAYLDL--SNNKLTGD----VPQELGRFDKLLSLNLSHNDLS  597 (785)
Q Consensus       555 ~~~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~  597 (785)
                      .+...+.|++|++  ++|.+...    +...+...++|+.|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3444455555555  44555421    2223344456666666666653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=98.15  E-value=3.9e-07  Score=96.01  Aligned_cols=88  Identities=25%  Similarity=0.319  Sum_probs=57.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+......+.++|||||||+++|++| |+.|..-.   ..+..  ...+-..+....   ...   ..+.++...|.+.
T Consensus       264 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~--~~~~~~~~~~~~---~~~---~~l~~li~~~l~~  335 (359)
T 3vhe_A          264 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR--RLKEGTRMRAPD---YTT---PEMYQTMLDCWHG  335 (359)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH--HHHHTCCCCCCT---TCC---HHHHHHHHHHTCS
T ss_pred             hhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHH--HHHcCCCCCCCC---CCC---HHHHHHHHHHccC
Confidence            465566778899999999999999999 99985310   00000  000000011111   111   1245667889999


Q ss_pred             CCCCCCChHHHHHHHHhccc
Q 003931          746 TPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      +|++||+|.||++.|+++.+
T Consensus       336 dP~~Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          336 EPSQRPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             SGGGSCCHHHHHHHHHHHHH
T ss_pred             ChhhCCCHHHHHHHHHHHHH
Confidence            99999999999999988754

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.15  E-value=1.3e-07  Score=103.11  Aligned_cols=96  Identities=11%  Similarity=0.140  Sum_probs=57.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++||||||||++||+||+.|..-............+.+..+....... ...-..+.++...|.+.+|+
T Consensus       182 PE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~  261 (483)
T 3sv0_A          182 VNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFD  261 (483)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTT
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChh
Confidence            35555566788999999999999999999995311000000000011110000000000 00012356778899999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||+|.+|+++|+++..
T Consensus       262 ~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          262 DKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             CCCCHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHH
Confidence            99999999999988744

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=98.15  E-value=6.1e-07  Score=94.73  Aligned_cols=95  Identities=27%  Similarity=0.311  Sum_probs=59.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCC-CCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRH-PGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~-p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++|||||||++.|++||++ |..-...   ......+... ....+. ..   -..+.++...|++.+|
T Consensus       265 PE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~---~~~~~~~~~~~~~~~p~-~~---~~~l~~li~~cl~~dp  337 (373)
T 3c1x_A          265 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT---FDITVYLLQGRRLLQPE-YC---PDPLYEVMLKCWHPKA  337 (373)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS---SCHHHHHHTTCCCCCCT-TC---CHHHHHHHHHHTCSSG
T ss_pred             hHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH---HHHHHHHHcCCCCCCCC-CC---CHHHHHHHHHHcCCCh
Confidence            355556778899999999999999999544 4320000   0000000000 000010 11   1234567789999999


Q ss_pred             CCCCChHHHHHHHHhcccccCCCC
Q 003931          748 DTRPSMRFVAQELSAKTQAYLPEP  771 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~~~~~~~  771 (785)
                      ++||++.||++.|+++...+....
T Consensus       338 ~~RPs~~ell~~L~~i~~~~~~~~  361 (373)
T 3c1x_A          338 EMRPSFSELVSRISAIFSTFIGEH  361 (373)
T ss_dssp             GGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred             hhCcCHHHHHHHHHHHHHhccccc
Confidence            999999999999999877665443

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=98.14  E-value=3.7e-07  Score=95.53  Aligned_cols=93  Identities=24%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++|||||||++.|++| |+.|..-...   ......+.+..........   -..+.++...|.+.+|+
T Consensus       245 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~  318 (343)
T 1luf_A          245 PESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH---EEVIYYVRDGNILACPENC---PLELYNLMRLCWSKLPA  318 (343)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGG
T ss_pred             hhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh---HHHHHHHhCCCcCCCCCCC---CHHHHHHHHHHcccCcc
Confidence            355556678899999999999999999 9988531000   0000011111111000011   12345677899999999


Q ss_pred             CCCChHHHHHHHHhcccccC
Q 003931          749 TRPSMRFVAQELSAKTQAYL  768 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~~  768 (785)
                      +||++.||++.|+++.+.+.
T Consensus       319 ~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          319 DRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             GSCCHHHHHHHHHHTTC---
T ss_pred             cCCCHHHHHHHHHHHHhhhh
Confidence            99999999999999876543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=98.14  E-value=4.8e-07  Score=91.50  Aligned_cols=86  Identities=24%  Similarity=0.328  Sum_probs=57.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.++||||||+++.|++| |+.|..      +...+...      ..+....   ...   ..+.++...|
T Consensus       179 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~------~~~~~~~---~~~---~~l~~li~~~  246 (279)
T 1qpc_A          179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG------YRMVRPD---NCP---EELYQLMRLC  246 (279)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT------CCCCCCT---TCC---HHHHHHHHHH
T ss_pred             hhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcc------cCCCCcc---ccc---HHHHHHHHHH
Confidence            355555677899999999999999999 888853      11111110      0011100   111   2345677889


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      .+.+|++||+|.+++++|+++....
T Consensus       247 l~~~p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          247 WKERPEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             hccChhhCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999998876544

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=98.13  E-value=5.9e-07  Score=91.85  Aligned_cols=94  Identities=28%  Similarity=0.338  Sum_probs=58.6

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCC-CCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRL-PPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |.......+.++||||||++++|++||+.|-.-..   ......+.+.... ........   ..+.++...|.+.+|++
T Consensus       198 E~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~  271 (298)
T 3pls_A          198 ESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI---DPFDLTHFLAQGRRLPQPEYCP---DSLYQVMQQCWEADPAV  271 (298)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS---CGGGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGG
T ss_pred             hhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC---CHHHHHHHhhcCCCCCCCccch---HHHHHHHHHHccCChhh
Confidence            44455667889999999999999999877731000   0000000000000 00000111   13456778999999999


Q ss_pred             CCChHHHHHHHHhcccccCCC
Q 003931          750 RPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      ||++.+|+++|+++.......
T Consensus       272 Rps~~~ll~~l~~~~~~l~~~  292 (298)
T 3pls_A          272 RPTFRVLVGEVEQIVSALLGD  292 (298)
T ss_dssp             SCCHHHHHHHHHHHHHHCCSC
T ss_pred             CcCHHHHHHHHHHHHHHHhcc
Confidence            999999999999987765443

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=98.13  E-value=6.4e-07  Score=94.58  Aligned_cols=91  Identities=21%  Similarity=0.280  Sum_probs=57.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++|||||||++.||+| |+.|..-...   ......+...........   +-..+.++...|.+.+|+
T Consensus       274 PE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~dP~  347 (370)
T 2psq_A          274 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV---EELFKLLKEGHRMDKPAN---CTNELYMMMRDCWHAVPS  347 (370)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG---GGHHHHHHTTCCCCCCTT---SCHHHHHHHHHHTCSSGG
T ss_pred             HhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH---HHHHHHHhcCCCCCCCCC---CCHHHHHHHHHHcCCChh
Confidence            355556678899999999999999999 8888531000   000000000000000001   112345667789999999


Q ss_pred             CCCChHHHHHHHHhcccc
Q 003931          749 TRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~  766 (785)
                      +||++.||++.|+++...
T Consensus       348 ~Rpt~~ell~~L~~il~~  365 (370)
T 2psq_A          348 QRPTFKQLVEDLDRILTL  365 (370)
T ss_dssp             GSCCHHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHHH
Confidence            999999999999987543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=98.13  E-value=7.7e-07  Score=90.41  Aligned_cols=82  Identities=23%  Similarity=0.359  Sum_probs=52.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccC---cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ...+.++|||||||++.|++||+.|.+-......   ......-..+......      -..+.++...|.+.+|++||+
T Consensus       203 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps  276 (287)
T 4f0f_A          203 ESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDC------PPRLRNVIELCWSGDPKKRPH  276 (287)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTS------CHHHHHHHHHHTCSSGGGSCC
T ss_pred             CCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCccc------CHHHHHHHHHHhcCChhhCcC
Confidence            4467899999999999999999999541100000   0000001111111111      123456778899999999999


Q ss_pred             hHHHHHHHHhc
Q 003931          753 MRFVAQELSAK  763 (785)
Q Consensus       753 m~~vv~~l~~~  763 (785)
                      +.||+++|+++
T Consensus       277 ~~~ll~~L~~l  287 (287)
T 4f0f_A          277 FSYIVKELSEL  287 (287)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=98.13  E-value=3.7e-07  Score=96.39  Aligned_cols=84  Identities=21%  Similarity=0.302  Sum_probs=57.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.||+| |+.|..      +...+.....      +....   ..   -..+.++...|
T Consensus       255 PE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~------~~~~~---~~---~~~l~~li~~~  322 (367)
T 3l9p_A          255 PEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGR------MDPPK---NC---PGPVYRIMTQC  322 (367)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC------CCCCT---TC---CHHHHHHHHHH
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC------CCCCc---cC---CHHHHHHHHHH
Confidence            355556678899999999999999998 888853      1111111100      00000   11   12345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+.+|++||+|.||++.|+.+..
T Consensus       323 l~~dP~~Rps~~eil~~l~~~~~  345 (367)
T 3l9p_A          323 WQHQPEDRPNFAIILERIEYCTQ  345 (367)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHHHHHhh
Confidence            99999999999999999987754

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=98.13  E-value=8.2e-07  Score=90.30  Aligned_cols=88  Identities=24%  Similarity=0.355  Sum_probs=53.1

Q ss_pred             hhhhh-cccccccceeeeehhhhhhhhCCCCC-chhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPG-ELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |.... ...+.++|||||||++.|++||+.|- .-...........  ..+.+.....      ..+.++...|.+.+|+
T Consensus       187 E~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~li~~~l~~dp~  258 (289)
T 4fvq_A          187 ECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYE--DRHQLPAPKA------AELANLINNCMDYEPD  258 (289)
T ss_dssp             HHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH--TTCCCCCCSS------CTTHHHHHHHSCSSGG
T ss_pred             HHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhh--ccCCCCCCCC------HHHHHHHHHHcCCChh
Confidence            44333 56788999999999999999976652 1000000000000  0001111000      1134567789999999


Q ss_pred             CCCChHHHHHHHHhcccc
Q 003931          749 TRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~  766 (785)
                      +||++.||++.|+++-.+
T Consensus       259 ~Rps~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          259 HRPSFRAIIRDLNSLFTP  276 (289)
T ss_dssp             GSCCHHHHHHHHHTCC--
T ss_pred             HCcCHHHHHHHHHHhcCC
Confidence            999999999999988654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=4.1e-07  Score=89.64  Aligned_cols=80  Identities=28%  Similarity=0.369  Sum_probs=58.1

Q ss_pred             hcccccceeccccceeee--ccCcchhccccCCeeecccCccccCCCcccccCC--CCCeecccCCcccCcCCc------
Q 003931          485 GECRNLSNLQLDRNRISG--GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV--KLFNLNLSNNHLTGEIPK------  554 (785)
Q Consensus       485 ~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~p~------  554 (785)
                      ..+++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|.+.+.+|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456778888888888876  4456677888888888888888754  3344444  888999999988876552      


Q ss_pred             -ccccCCCCCeEe
Q 003931          555 -SISNLTELAYLD  566 (785)
Q Consensus       555 -~~~~l~~L~~L~  566 (785)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             356677777776

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.12  E-value=6.7e-07  Score=92.75  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=57.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCC-CCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPP-PTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++|||||||++.|++| |+.|.+-...    ....+.+...... .....   -..+.++...|.+.+|
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp  260 (327)
T 3lzb_A          188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA----SEISSILEKGERLPQPPIC---TIDVYMIMRKCWMIDA  260 (327)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG----GGHHHHHHTTCCCCCCTTB---CHHHHHHHHHHTCSSG
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH----HHHHHHHHcCCCCCCCccC---CHHHHHHHHHHcCCCh
Confidence            355556677889999999999999999 9999541100    0011111111000 00011   1234567788999999


Q ss_pred             CCCCChHHHHHHHHhcc
Q 003931          748 DTRPSMRFVAQELSAKT  764 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~  764 (785)
                      ++||+|.||++.|+++.
T Consensus       261 ~~Rps~~ell~~L~~~~  277 (327)
T 3lzb_A          261 DSRPKFRELIIEFSKMA  277 (327)
T ss_dssp             GGSCCHHHHHHHHHHHH
T ss_pred             hHCcCHHHHHHHHHHHH
Confidence            99999999999998775

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.12  E-value=7.2e-07  Score=98.13  Aligned_cols=88  Identities=24%  Similarity=0.319  Sum_probs=58.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCC--CCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQR--LPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|.......+.|+|||||||++.||+| |+.|..-...    ....+.+...  +..+. .   +-..+.++...|.+.+
T Consensus       388 PE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~-~---~~~~l~~li~~cl~~d  459 (495)
T 1opk_A          388 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVYELLEKDYRMERPE-G---CPEKVYELMRACWQWN  459 (495)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSS
T ss_pred             HhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCcC
Confidence            355556678899999999999999999 8888531100    0011111111  11111 1   1123456778999999


Q ss_pred             CCCCCChHHHHHHHHhccc
Q 003931          747 PDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~  765 (785)
                      |++||+|.+|+++|+.+..
T Consensus       460 P~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          460 PSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             GGGSCCHHHHHHHHHTSCS
T ss_pred             hhHCcCHHHHHHHHHHHHh
Confidence            9999999999999988754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.12  E-value=9.2e-07  Score=90.03  Aligned_cols=86  Identities=24%  Similarity=0.386  Sum_probs=56.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++||||||++++|++| |+.|..      +...+....       ....... ..   -..+.++...|
T Consensus       193 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~~-~~---~~~l~~li~~~  261 (291)
T 1u46_A          193 PESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEG-------ERLPRPE-DC---PQDIYNVMVQC  261 (291)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSC-------CCCCCCT-TC---CHHHHHHHHHH
T ss_pred             chhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccC-------CCCCCCc-Cc---CHHHHHHHHHH
Confidence            355555667899999999999999999 999853      111111100       0000000 11   12345677889


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .+.+|++||++.+|++.|+++...
T Consensus       262 l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          262 WAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             ccCCcccCcCHHHHHHHHHHhCcc
Confidence            999999999999999999987654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.12  E-value=7.8e-07  Score=92.53  Aligned_cols=89  Identities=26%  Similarity=0.389  Sum_probs=56.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++|||||||++.|++| |+.|..-...   ......+.+. ....+. ..   -..+.++...|++.+|
T Consensus       219 PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~---~~~~~~~~~~~~~~~~~-~~---~~~l~~li~~~l~~~p  291 (333)
T 1mqb_A          219 PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN---HEVMKAINDGFRLPTPM-DC---PSAIYQLMMQCWQQER  291 (333)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH---HHHHHHHHTTCCCCCCT-TC---BHHHHHHHHHHTCSST
T ss_pred             chhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH---HHHHHHHHCCCcCCCcc-cC---CHHHHHHHHHHcCCCh
Confidence            355455667889999999999999999 9998531000   0000001111 010010 11   1234567889999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||+|.||+++|+++..
T Consensus       292 ~~Rps~~~l~~~L~~~~~  309 (333)
T 1mqb_A          292 ARRPKFADIVSILDKLIR  309 (333)
T ss_dssp             TTSCCHHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHHh
Confidence            999999999999987643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=98.11  E-value=1.3e-07  Score=98.27  Aligned_cols=96  Identities=9%  Similarity=0.063  Sum_probs=57.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-............+.+.....+........-.+.++...|.+.+|.+
T Consensus       186 PE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~li~~~l~~~p~~  265 (330)
T 2izr_A          186 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFE  265 (330)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHCCTTC
T ss_pred             hHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccChHHHHHHHHHHhCCCCC
Confidence            35555566788999999999999999999995311000000000001010000000000000115667788899999999


Q ss_pred             CCChHHHHHHHHhccc
Q 003931          750 RPSMRFVAQELSAKTQ  765 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~  765 (785)
                      ||++.+|++.|+++..
T Consensus       266 RP~~~~l~~~l~~~~~  281 (330)
T 2izr_A          266 KPDYDYLRKLFTDLFD  281 (330)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999987643

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=98.11  E-value=7.2e-07  Score=90.43  Aligned_cols=90  Identities=19%  Similarity=0.331  Sum_probs=57.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||+++.|++| |+.|.+-.........+.+...+.....  ..    ..+.++...|.+.+|+
T Consensus       190 PE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~li~~~l~~~p~  263 (283)
T 3gen_A          190 PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHL--AS----EKVYTIMYSCWHEKAD  263 (283)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTT--CC----HHHHHHHHHTTCSSGG
T ss_pred             HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCc--CC----HHHHHHHHHHccCChh
Confidence            355555677889999999999999999 9998541100000000000011111110  11    1245677899999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||++.||++.|.++..
T Consensus       264 ~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          264 ERPTFKILLSNILDVMD  280 (283)
T ss_dssp             GSCCHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHhh
Confidence            99999999999988754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=98.10  E-value=5.8e-07  Score=91.14  Aligned_cols=89  Identities=12%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.......+.++||||||++++|++||+.|..-....     ..++.+..+.....   ..   +.++...|.+.+|++
T Consensus       190 PE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~---~~~li~~~l~~dp~~  258 (284)
T 2a19_B          190 PEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKF-----FTDLRDGIISDIFD---KK---EKTLLQKLLSKKPED  258 (284)
T ss_dssp             HHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHH-----HHHHHTTCCCTTSC---HH---HHHHHHHHTCSSGGG
T ss_pred             hhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHH-----HHHhhcccccccCC---HH---HHHHHHHHccCChhh
Confidence            35555566789999999999999999999885311000     00111111111111   11   335667899999999


Q ss_pred             CCChHHHHHHHHhcccccCC
Q 003931          750 RPSMRFVAQELSAKTQAYLP  769 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~~~~~  769 (785)
                      ||++.||++.|..++.....
T Consensus       259 Rps~~e~l~~l~~~~~~~~~  278 (284)
T 2a19_B          259 RPNTSEILRTLTVWKKSPEK  278 (284)
T ss_dssp             SCCHHHHHHHHHHHTC----
T ss_pred             CcCHHHHHHHHHHHhhCCCc
Confidence            99999999999988765433

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=98.10  E-value=7.5e-07  Score=91.82  Aligned_cols=89  Identities=24%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCC-CCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRL-PPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++||||||+++.|++| |+.|..-...    ....+.+.... ........   ..+.++...|.+.+|
T Consensus       221 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~dp  293 (314)
T 2ivs_A          221 IESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP----ERLFNLLKTGHRMERPDNCS---EEMYRLMLQCWKQEP  293 (314)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSG
T ss_pred             hhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHhhcCCcCCCCccCC---HHHHHHHHHHccCCh
Confidence            355556678899999999999999999 9988531100    00001110000 00000111   234567789999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||++.||++.|+++..
T Consensus       294 ~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          294 DKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             GGSCCHHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHHh
Confidence            999999999999988754

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=98.10  E-value=6.7e-07  Score=92.16  Aligned_cols=91  Identities=19%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++||||||+++.|++| |+.|..-...... .....+...+....   ...   ..+.++...|.+.+|
T Consensus       216 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~dp  289 (313)
T 1t46_A          216 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE---HAP---AEMYDIMKTCWDADP  289 (313)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCT---TSC---HHHHHHHHHHTCSSG
T ss_pred             hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcc---cCC---HHHHHHHHHHcCCCc
Confidence            355556678899999999999999999 8888531100000 00000111111111   111   234566789999999


Q ss_pred             CCCCChHHHHHHHHhcccc
Q 003931          748 DTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++||++.||+++|+++...
T Consensus       290 ~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          290 LKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             GGSCCHHHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHHHH
Confidence            9999999999999887654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.10  E-value=5.7e-07  Score=99.92  Aligned_cols=89  Identities=26%  Similarity=0.434  Sum_probs=60.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.|+|||||||++.||+| |+.|..      +...+....        ++..+. .   +-..+.++...|
T Consensus       433 PE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~--------~~~~~~-~---~~~~l~~li~~c  500 (535)
T 2h8h_A          433 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY--------RMPCPP-E---CPESLHDLMCQC  500 (535)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTC--------CCCCCT-T---CCHHHHHHHHHH
T ss_pred             HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-C---CCHHHHHHHHHH
Confidence            355556678899999999999999999 888853      111111110        111000 1   112345677899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      ++.+|++||+|.+|+++|+++.....++
T Consensus       501 l~~dP~~RPt~~~l~~~L~~~~~~~~~~  528 (535)
T 2h8h_A          501 WRKEPEERPTFEYLQAFLEDYFTSTEPQ  528 (535)
T ss_dssp             TCSSGGGSCCHHHHHHHHHTSSCCCSCS
T ss_pred             cCCChhHCcCHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999886654443

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=98.09  E-value=7.7e-07  Score=91.70  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |.......+.++||||||++++|++| |+.|..-...   ......+...........   .-..+.++...|.+.+|++
T Consensus       219 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~dp~~  292 (313)
T 3brb_A          219 ESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN---HEMYDYLLHGHRLKQPED---CLDELYEIMYSCWRTDPLD  292 (313)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG---GGHHHHHHTTCCCCCBTT---CCHHHHHHHHHTTCSSGGG
T ss_pred             hhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH---HHHHHHHHcCCCCCCCcc---ccHHHHHHHHHHcCCChhh
Confidence            44445667889999999999999999 7777531100   000000111100000001   1123456778999999999


Q ss_pred             CCChHHHHHHHHhcccc
Q 003931          750 RPSMRFVAQELSAKTQA  766 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~~  766 (785)
                      ||++.+|++.|+++...
T Consensus       293 Rps~~~l~~~L~~l~~~  309 (313)
T 3brb_A          293 RPTFSVLRLQLEKLLES  309 (313)
T ss_dssp             SCCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999988654

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=98.09  E-value=7.9e-07  Score=90.01  Aligned_cols=90  Identities=21%  Similarity=0.290  Sum_probs=56.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.++||||||+++.|++| |+.|.+-...   ......+.+...........   ..+.++...|.+.+|+
T Consensus       186 PE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~---~~l~~li~~~l~~~p~  259 (281)
T 1mp8_A          186 PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN---NDVIGRIENGERLPMPPNCP---PTLYSLMTKCWAYDPS  259 (281)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG---GGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGG
T ss_pred             hhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH---HHHHHHHHcCCCCCCCCCCC---HHHHHHHHHHccCChh
Confidence            354455667889999999999999997 8888531100   00000111100000000111   2244667889999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||++.||++.|+++..
T Consensus       260 ~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          260 RRPRFTELKAQLSTILE  276 (281)
T ss_dssp             GSCCHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHH
Confidence            99999999999988754

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.08  E-value=7.5e-07  Score=90.51  Aligned_cols=86  Identities=20%  Similarity=0.287  Sum_probs=58.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++||||||++++|++| |+.|..      +...+....      .+....   ...   ..+.++...|
T Consensus       182 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~------~~~~~~---~~~---~~l~~li~~~  249 (287)
T 1u59_A          182 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK------RMECPP---ECP---PELYALMSDC  249 (287)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTC------CCCCCT---TCC---HHHHHHHHHT
T ss_pred             HHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCC------cCCCCC---CcC---HHHHHHHHHH
Confidence            355555678899999999999999999 999953      111111100      011111   111   2345677899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~  767 (785)
                      .+.+|++||++.||++.|.++..+.
T Consensus       250 l~~~p~~Rps~~~l~~~l~~~~~~~  274 (287)
T 1u59_A          250 WIYKWEDRPDFLTVEQRMRACYYSL  274 (287)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             cCCChhhCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999998875443

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=98.07  E-value=1.1e-06  Score=91.10  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=57.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |.......+.++|||||||++.|++| |+.|.+-...   ......+............   ...+.++...|.+.+|++
T Consensus       209 E~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~  282 (323)
T 3qup_A          209 ESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN---AEIYNYLIGGNRLKQPPEC---MEEVYDLMYQCWSADPKQ  282 (323)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG---GGHHHHHHTTCCCCCCTTC---CHHHHHHHHHTTCSSGGG
T ss_pred             hhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh---HHHHHHHhcCCCCCCCCcc---CHHHHHHHHHHccCChhh
Confidence            44455667899999999999999999 8888531100   0000011111100000011   123557788999999999


Q ss_pred             CCChHHHHHHHHhcccc
Q 003931          750 RPSMRFVAQELSAKTQA  766 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~~  766 (785)
                      ||++.+|++.|+++-..
T Consensus       283 Rps~~~l~~~l~~~l~~  299 (323)
T 3qup_A          283 RPSFTCLRMELENILGH  299 (323)
T ss_dssp             SCCHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999987543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=98.06  E-value=1.1e-06  Score=91.22  Aligned_cols=92  Identities=21%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++||||||+++.|++| |+.|..-.........+..-..+....   ...   ..+.++...|.+.+|+
T Consensus       210 PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~dp~  283 (327)
T 1fvr_A          210 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL---NCD---DEVYDLMRQCWREKPY  283 (327)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCT---TBC---HHHHHHHHHHTCSSGG
T ss_pred             hhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCC---CCC---HHHHHHHHHHccCChh
Confidence            355555667899999999999999999 999953110000000000000111111   111   1244667889999999


Q ss_pred             CCCChHHHHHHHHhccccc
Q 003931          749 TRPSMRFVAQELSAKTQAY  767 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~~~  767 (785)
                      +||++.||++.|.++....
T Consensus       284 ~Rps~~ell~~L~~~~~~~  302 (327)
T 1fvr_A          284 ERPSFAQILVSLNRMLEER  302 (327)
T ss_dssp             GSCCHHHHHHHHHHHHHSS
T ss_pred             hCcCHHHHHHHHHHHHHhh
Confidence            9999999999998875543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=98.05  E-value=8.1e-07  Score=92.46  Aligned_cols=89  Identities=20%  Similarity=0.302  Sum_probs=56.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCC--CCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLP--PPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|.......+.++|||||||++.|++| |+.|.+-...   .....+++.....  .+. ...   ..+.++...|.+.+
T Consensus       235 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~-~~~---~~l~~li~~~l~~~  307 (333)
T 2i1m_A          235 PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV---NSKFYKLVKDGYQMAQPA-FAP---KNIYSIMQACWALE  307 (333)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS---SHHHHHHHHHTCCCCCCT-TCC---HHHHHHHHHHTCSS
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch---hHHHHHHHhcCCCCCCCC-CCC---HHHHHHHHHHhccC
Confidence            355556678899999999999999999 8888531000   0000011110000  000 001   23456778899999


Q ss_pred             CCCCCChHHHHHHHHhccc
Q 003931          747 PDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~  765 (785)
                      |++||++.||++.|+++..
T Consensus       308 p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          308 PTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             GGGSCCHHHHHHHHHHHHH
T ss_pred             hhhCcCHHHHHHHHHHHHH
Confidence            9999999999999988754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.05  E-value=8e-07  Score=91.90  Aligned_cols=85  Identities=14%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||+++|++||+.|..-......-..+.+...+.+.... ....   .+.++...|.+.+|++
T Consensus       210 PE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~~li~~~l~~dp~~  285 (321)
T 2c30_A          210 PEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSH-KVSP---VLRDFLERMLVRDPQE  285 (321)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGG-GSCH---HHHHHHHHHSCSSTTT
T ss_pred             HhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccc-cCCH---HHHHHHHHHccCChhh
Confidence            45555667889999999999999999999995310000000001111111111100 1111   2345667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||+|.||++
T Consensus       286 Rps~~ell~  294 (321)
T 2c30_A          286 RATAQELLD  294 (321)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhc
Confidence            999999965

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=98.04  E-value=9.7e-07  Score=91.89  Aligned_cols=85  Identities=22%  Similarity=0.325  Sum_probs=57.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||+++|++| |+.|..      +...+....      .+....   ..   -..+.++...|
T Consensus       228 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~---~~~l~~li~~~  295 (334)
T 2pvf_A          228 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGH------RMDKPA---NC---TNELYMMMRDC  295 (334)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTC------CCCCCT---TC---CHHHHHHHHHH
T ss_pred             hHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCC------CCCCCc---cC---CHHHHHHHHHH
Confidence            455556678899999999999999999 998853      111111000      011111   11   12345667889


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .+.+|++||++.||++.|+++...
T Consensus       296 l~~dp~~Rps~~ell~~L~~l~~~  319 (334)
T 2pvf_A          296 WHAVPSQRPTFKQLVEDLDRILTL  319 (334)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccCChhhCcCHHHHHHHHHHHHhc
Confidence            999999999999999999988654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=98.04  E-value=9.1e-07  Score=100.16  Aligned_cols=88  Identities=20%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCC--CCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQR--LPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+......+.|+|||||||+++||+| |+.|..-...    ....+.+...  ...+. .   +-..+.++...|++.+
T Consensus       541 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~----~~~~~~i~~~~~~~~p~-~---~~~~l~~li~~cl~~d  612 (635)
T 4fl3_A          541 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SEVTAMLEKGERMGCPA-G---CPREMYDLMNLCWTYD  612 (635)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSS
T ss_pred             hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCCC
Confidence            466666778999999999999999999 9999531000    0000111100  00000 1   1123456778899999


Q ss_pred             CCCCCChHHHHHHHHhccc
Q 003931          747 PDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~~  765 (785)
                      |++||+|.+|+++|+++-.
T Consensus       613 P~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          613 VENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             TTTSCCHHHHHHHHHHHHH
T ss_pred             HhHCcCHHHHHHHHHHHHH
Confidence            9999999999999987643

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.04  E-value=3.9e-07  Score=95.26  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||+++||+||+.|.+-.  .........++++...... .....   .+.++...|.+.+|++||+|.
T Consensus       195 ~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~L~~dp~~Rpt~~  269 (343)
T 3dbq_A          195 SKISPKSDVWSLGCILYYMTYGKTPFQQI--INQISKLHAIIDPNHEIEFPDIPEK---DLQDVLKCCLKRDPKQRISIP  269 (343)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSSCTTTTC--CSHHHHHHHHHCTTSCCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHH
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCcchhh--hhHHHHHHHHhcCCcccCCcccCCH---HHHHHHHHHcCCChhHCCCHH
Confidence            56788999999999999999999995310  0000111222332221110 01111   234667789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ||++
T Consensus       270 e~l~  273 (343)
T 3dbq_A          270 ELLA  273 (343)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9976

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=98.04  E-value=5.5e-07  Score=95.84  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCc-hhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTG-QLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||++.||+||+.|.+-.  ........+++++....... ....   .+.++...|.+.+|++||+|.
T Consensus       242 ~~~~~~~DiwSlGvil~ell~G~~Pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~L~~dP~~Rps~~  316 (390)
T 2zmd_A          242 SKISPKSDVWSLGCILYYMTYGKTPFQQI--INQISKLHAIIDPNHEIEFPDIPEK---DLQDVLKCCLKRDPKQRISIP  316 (390)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSSCTTTTC--CCHHHHHHHHHCTTSCCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHH
T ss_pred             cCCCChhhHHHHHHHHHHHHHCCCcchhh--hHHHHHHHHHhCccccCCCCccchH---HHHHHHHHHcccChhhCCCHH
Confidence            35788999999999999999999995310  00001122333333221100 1111   244667789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ||++
T Consensus       317 ell~  320 (390)
T 2zmd_A          317 ELLA  320 (390)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9975

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=98.02  E-value=2.7e-06  Score=87.33  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhh------hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELIT------SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      |+......+.++||||||+++.|++||+.|.+-..      .+...........+.+.          ..+.++...|.+
T Consensus       205 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~li~~~l~  274 (309)
T 2h34_A          205 ERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIP----------VAFDAVIARGMA  274 (309)
T ss_dssp             GGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCC----------THHHHHHHHHTC
T ss_pred             HHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCC----------HHHHHHHHHhcc
Confidence            44444566889999999999999999999964111      01000000011111111          123456778999


Q ss_pred             CCCCCCC-ChHHHHHHHHhcccc
Q 003931          745 TTPDTRP-SMRFVAQELSAKTQA  766 (785)
Q Consensus       745 ~~p~~Rp-~m~~vv~~l~~~~~~  766 (785)
                      .+|++|| ++.++++.|++.-..
T Consensus       275 ~dP~~Rp~s~~~l~~~l~~~l~~  297 (309)
T 2h34_A          275 KNPEDRYVTCGDLSAAAHAALAT  297 (309)
T ss_dssp             SSGGGSCSSHHHHHHHHHHTCC-
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHh
Confidence            9999999 999999999876443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=98.02  E-value=1.4e-06  Score=88.44  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=56.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.++||||||+++.|++| |+.|..-...    ....+.+....... .....   ..+.++...|.+.+|
T Consensus       181 PE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp  253 (288)
T 3kfa_A          181 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVYELLEKDYRMERPEGCP---EKVYELMRACWQWNP  253 (288)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSG
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHhccCCCCCCCCCC---HHHHHHHHHHhCCCh
Confidence            455555677889999999999999999 8888531100    00001111110000 00111   234566778999999


Q ss_pred             CCCCChHHHHHHHHhccc
Q 003931          748 DTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++||++.||+++|+++..
T Consensus       254 ~~Rps~~~~~~~l~~~~~  271 (288)
T 3kfa_A          254 SDRPSFAEIHQAFETMFQ  271 (288)
T ss_dssp             GGSCCHHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHHH
Confidence            999999999999987654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=98.02  E-value=1.2e-06  Score=91.56  Aligned_cols=91  Identities=18%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++|||||||+++|++| |+.|..-...   .....+++....... .....   ..+.++...|.+.+|
T Consensus       243 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp  316 (344)
T 1rjb_A          243 PESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV---DANFYKLIQNGFKMDQPFYAT---EEIYIIMQSCWAFDS  316 (344)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC---SHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSG
T ss_pred             HHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc---HHHHHHHHhcCCCCCCCCCCC---HHHHHHHHHHcCCCc
Confidence            455556678899999999999999999 9988531100   000001111110000 00111   224566788999999


Q ss_pred             CCCCChHHHHHHHHhcccc
Q 003931          748 DTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++||++.||++.|+.+...
T Consensus       317 ~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          317 RKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             GGSCCHHHHHHHHHHHC--
T ss_pred             hhCcCHHHHHHHHHHHHHH
Confidence            9999999999999887554

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=98.02  E-value=1.1e-06  Score=90.70  Aligned_cols=91  Identities=25%  Similarity=0.271  Sum_probs=57.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++||||||++++|++| |+.|..-...... .....+-..+....   ...   ..+.++...|.+.+|
T Consensus       219 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~dp  292 (316)
T 2xir_A          219 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD---YTT---PEMYQTMLDCWHGEP  292 (316)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCT---TCC---HHHHHHHHHHTCSSG
T ss_pred             chhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCC---CCC---HHHHHHHHHHcCCCh
Confidence            355556677899999999999999999 9988531100000 00000000011111   111   124566778999999


Q ss_pred             CCCCChHHHHHHHHhcccc
Q 003931          748 DTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       748 ~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++||++.||++.|+.+.+.
T Consensus       293 ~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          293 SQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             GGSCCHHHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHHhh
Confidence            9999999999999887654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=98.00  E-value=9.3e-07  Score=90.53  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc--hh---hhccC---c---ccccccccCCCCC-CCchhHHHHHHHHH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE--LI---TSLSG---E---LFLKDVLDQRLPP-PTGQLAEAVVLTIN  737 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~--~~---~~~~~---~---~~~~~~~d~~l~~-~~~~~~~~~~~~~~  737 (785)
                      +|.......+.++||||+|++++|++||+.|..  ..   .....   .   ....+.+...... ......   ..+.+
T Consensus       198 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~  274 (302)
T 4e5w_A          198 PECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCP---DEVYQ  274 (302)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCC---HHHHH
T ss_pred             CeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCC---HHHHH
Confidence            455556677889999999999999999999854  11   11000   0   0000111111000 000111   23456


Q ss_pred             HHhhcCCCCCCCCCChHHHHHHHHhc
Q 003931          738 VALACTSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       738 ial~C~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      +...|.+.+|++||++.||+++|+++
T Consensus       275 li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          275 LMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            78899999999999999999999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=97.99  E-value=1.5e-06  Score=90.17  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.++||||||++++|++| |+.|..      +..++....      .+....   ...   ..+.++...|
T Consensus       214 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~~---~~l~~li~~~  281 (327)
T 2yfx_A          214 PEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG------RMDPPK---NCP---GPVYRIMTQC  281 (327)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC------CCCCCT---TCC---HHHHHHHHHH
T ss_pred             HhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCC------CCCCCC---CCC---HHHHHHHHHH
Confidence            355556677899999999999999999 888853      111111110      001111   111   1345677899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+.+|++||+|.||++.|..+..
T Consensus       282 l~~dp~~Rps~~~ll~~l~~~~~  304 (327)
T 2yfx_A          282 WQHQPEDRPNFAIILERIEYCTQ  304 (327)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hcCChhhCcCHHHHHHHHHHHhc
Confidence            99999999999999999987644

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=97.96  E-value=1.7e-06  Score=88.36  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      .....+.++|||||||++.|++||+.|..-...... ......+.......+.......-..+.++...|.+.+|++||+
T Consensus       171 ~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps  250 (299)
T 3m2w_A          171 TGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  250 (299)
T ss_dssp             TTCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             ccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCC
Confidence            345678899999999999999999999531100000 0000001111110000000001123456778899999999999


Q ss_pred             hHHHHH--HHHhc
Q 003931          753 MRFVAQ--ELSAK  763 (785)
Q Consensus       753 m~~vv~--~l~~~  763 (785)
                      +.||++  .+.+.
T Consensus       251 ~~e~l~hp~~~~~  263 (299)
T 3m2w_A          251 ITEFMNHPWIMQS  263 (299)
T ss_dssp             HHHHHTSHHHHTG
T ss_pred             HHHHhcChhhccc
Confidence            999987  45443

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=97.95  E-value=1.3e-06  Score=88.36  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |.......+.++||||||+++.|++||+.|.+-...   ......+.......+. ...   ..+.++...|.+.+|++|
T Consensus       182 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~-~~~---~~~~~li~~~l~~dp~~R  254 (278)
T 3cok_A          182 EIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV---KNTLNKVVLADYEMPS-FLS---IEAKDLIHQLLRRNPADR  254 (278)
T ss_dssp             ----------CTHHHHHHHHHHHHHHSSCSSCCCSC---C-----CCSSCCCCCT-TSC---HHHHHHHHHHSCSSGGGS
T ss_pred             chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH---HHHHHHHhhcccCCcc-ccC---HHHHHHHHHHcccCHhhC
Confidence            333344567899999999999999999999542111   0011111111111111 111   124467788999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.+|++
T Consensus       255 ps~~~~l~  262 (278)
T 3cok_A          255 LSLSSVLD  262 (278)
T ss_dssp             CCHHHHTT
T ss_pred             CCHHHHhc
Confidence            99999864

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=97.94  E-value=1.1e-06  Score=90.54  Aligned_cols=83  Identities=17%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.....+.++||||+||++.||+||+.|.+-...   ......++.............+   +.++...|.+.+|++
T Consensus       194 PE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~i~~~~~~~~~~~~s~~---~~~li~~~L~~dP~~  267 (350)
T 4b9d_A          194 PEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM---KNLVLKIISGSFPPVSLHYSYD---LRSLVSQLFKRNPRD  267 (350)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHTCCCCCCTTSCHH---HHHHHHHHTCSSGGG
T ss_pred             HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH---HHHHHHHHcCCCCCCCccCCHH---HHHHHHHHccCChhH
Confidence            3555566678899999999999999999999530000   0000111111111000011122   335567899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       268 R~s~~e~l~  276 (350)
T 4b9d_A          268 RPSVNSILE  276 (350)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhc
Confidence            999999865

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=97.94  E-value=1.4e-06  Score=90.16  Aligned_cols=90  Identities=22%  Similarity=0.305  Sum_probs=56.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.++||||||++++|++| |+.|..-...   ......+.+...........   ..+.++...|.+.+|+
T Consensus       209 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~  282 (322)
T 1p4o_A          209 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN---EQVLRFVMEGGLLDKPDNCP---DMLFELMRMCWQYNPK  282 (322)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH---HHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGG
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH---HHHHHHHHcCCcCCCCCCCC---HHHHHHHHHHcCCCcc
Confidence            355555667899999999999999999 7887531000   00000111111110000111   1244667789999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||++.||++.|+++..
T Consensus       283 ~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          283 MRPSFLEIISSIKEEME  299 (322)
T ss_dssp             GSCCHHHHHHHHGGGSC
T ss_pred             cCcCHHHHHHHHHHhhc
Confidence            99999999999987633

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=97.92  E-value=1.3e-06  Score=91.44  Aligned_cols=87  Identities=13%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-...  .......+.+...........+.-..+.++...|.+.+|++
T Consensus       219 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  296 (349)
T 2w4o_A          219 PEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG--DQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKK  296 (349)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTC--HHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGG
T ss_pred             HHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcc--cHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhh
Confidence            4555566788999999999999999999999520000  00000111111110000000000112446678999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       297 Rpt~~e~l~  305 (349)
T 2w4o_A          297 RLTTFQALQ  305 (349)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999865

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=97.92  E-value=1e-06  Score=89.28  Aligned_cols=89  Identities=13%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||++.|++||+.|.+-......-......+..............-..+.++...|.+.+|++| ++.|+
T Consensus       178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el  256 (286)
T 3uqc_A          178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTL  256 (286)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHH
Confidence            57899999999999999999999953110000000000000100000000000001124566788999999999 99999


Q ss_pred             HHHHHhcccc
Q 003931          757 AQELSAKTQA  766 (785)
Q Consensus       757 v~~l~~~~~~  766 (785)
                      +++|+++...
T Consensus       257 ~~~L~~~~~~  266 (286)
T 3uqc_A          257 LNLMQQATAV  266 (286)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhcc
Confidence            9999987654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=97.91  E-value=1.8e-06  Score=88.83  Aligned_cols=85  Identities=18%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-......-..+.+...+.+... .....+   +.++.-.|.+.+|++
T Consensus       239 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~-~~~s~~---~~dli~~~L~~dP~~  314 (346)
T 4fih_A          239 PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL-HKVSPS---LKGFLDRLLVRDPAQ  314 (346)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCG-GGSCHH---HHHHHHHHSCSSTTT
T ss_pred             HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCcc-ccCCHH---HHHHHHHHcCCChhH
Confidence            4555556678999999999999999999999530000000000111111222111 011122   234566899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+.+
T Consensus       315 R~ta~e~l~  323 (346)
T 4fih_A          315 RATAAELLK  323 (346)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999998854

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.91  E-value=6.3e-06  Score=85.05  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCch----------h-hhccC--ccccccc---------ccCCCCCCCchhHHHH
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGEL----------I-TSLSG--ELFLKDV---------LDQRLPPPTGQLAEAV  732 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~----------~-~~~~~--~~~~~~~---------~d~~l~~~~~~~~~~~  732 (785)
                      ....+.++|||||||++.|++||+.|.+-          . .....  ......+         .++.+..........-
T Consensus       197 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (319)
T 4euu_A          197 QKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQ  276 (319)
T ss_dssp             CCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHH
Confidence            35678899999999999999999999530          0 00000  0000000         1111111111112222


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHHHHHhc
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ..+..+.-.|.+.+|++||++.|+++...+.
T Consensus       277 ~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          277 VLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             HHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             HHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence            3345677889999999999999999887654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=97.90  E-value=2e-06  Score=90.99  Aligned_cols=86  Identities=13%  Similarity=0.017  Sum_probs=50.7

Q ss_pred             hhhhhh--cccccccceeeeehhhhhhhhCCCCCchhhhccCccc----ccccccCCCCCCC-chhHHHHHHHHHHHhhc
Q 003931          670 TELAVT--MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF----LKDVLDQRLPPPT-GQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~--~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~----~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C  742 (785)
                      +|+...  ...+.++|||||||++.||+||+.|.+-.........    ...........+. ....+   .+.++...|
T Consensus       260 PE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~  336 (371)
T 3q60_A          260 REFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPD---FVKTLIGRF  336 (371)
T ss_dssp             HHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCH---HHHHHHHHH
T ss_pred             hhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCH---HHHHHHHHH
Confidence            355444  5678999999999999999999999541100000000    0000111111000 01111   244567789


Q ss_pred             CCCCCCCCCChHHHHH
Q 003931          743 TSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~  758 (785)
                      .+.+|++||++.|+++
T Consensus       337 L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          337 LNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TCSSTTTCCCHHHHTT
T ss_pred             cCCChhhCCCHHHHhc
Confidence            9999999999999864

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=97.90  E-value=9.1e-07  Score=91.17  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||+++|++||+.|.+-.  ........+++++...... .....   .+.++...|.+.+|++||++.
T Consensus       214 ~~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~  288 (313)
T 3cek_A          214 SKISPKSDVWSLGCILYYMTYGKTPFQQI--INQISKLHAIIDPNHEIEFPDIPEK---DLQDVLKCCLKRDPKQRISIP  288 (313)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSSCTTTTC--CSHHHHHHHHHCTTSCCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHH
T ss_pred             ccCCchHHHHHHHHHHHHHHhCCCchhhH--HHHHHHHHHHHhcccccCCcccchH---HHHHHHHHHccCCcccCcCHH
Confidence            45778999999999999999999995310  0000011222232221100 01111   234566789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ||++
T Consensus       289 ell~  292 (313)
T 3cek_A          289 ELLA  292 (313)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9975

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=97.90  E-value=3e-06  Score=89.73  Aligned_cols=76  Identities=9%  Similarity=-0.070  Sum_probs=48.8

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||++.||+||+.|..-...   ......+.. ....   . .+   .+.++...|.+.+|++||++.||
T Consensus       289 ~~~~~~DvwSlG~il~elltg~~Pf~~~~~---~~~~~~~~~-~~~~---~-~~---~~~~li~~~L~~dp~~Rpt~~e~  357 (377)
T 3byv_A          289 LMTFSFDAWALGLVIYWIWCADLPITKDAA---LGGSEWIFR-SCKN---I-PQ---PVRALLEGFLRYPKEDRLLPLQA  357 (377)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHSSCCC---------CCSGGGGS-SCCC---C-CH---HHHHHHHHHTCSSGGGCCCHHHH
T ss_pred             cCChhhhHHHHHHHHHHHHHCCCCCccccc---ccchhhhhh-hccC---C-CH---HHHHHHHHHcCCCchhCCCHHHH
Confidence            788999999999999999999999531110   001111111 1111   1 11   24466788999999999999999


Q ss_pred             HH--HHHhc
Q 003931          757 AQ--ELSAK  763 (785)
Q Consensus       757 v~--~l~~~  763 (785)
                      ++  .+.++
T Consensus       358 l~hp~f~~~  366 (377)
T 3byv_A          358 METPEYEQL  366 (377)
T ss_dssp             HTSHHHHHH
T ss_pred             hhChHHHHH
Confidence            86  44444

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=97.89  E-value=6.4e-06  Score=83.83  Aligned_cols=90  Identities=20%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhc---cC--cccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSL---SG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS  744 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~---~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~  744 (785)
                      +|.......+.++|||||||++.|++||+.|.+-....   ..  ....... .+....   ..   -..+.++...|.+
T Consensus       181 PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~---~~~l~~li~~~l~  253 (294)
T 4eqm_A          181 PEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNV-TTDVRK---DI---PQSLSNVILRATE  253 (294)
T ss_dssp             HHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCH-HHHSCT---TS---CHHHHHHHHHHSC
T ss_pred             HhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCc-chhccc---CC---CHHHHHHHHHHhc
Confidence            45555666788999999999999999999995411000   00  0000000 000000   00   1224466788999


Q ss_pred             CCCCCCC-ChHHHHHHHHhcccc
Q 003931          745 TTPDTRP-SMRFVAQELSAKTQA  766 (785)
Q Consensus       745 ~~p~~Rp-~m~~vv~~l~~~~~~  766 (785)
                      .+|++|| ++.++.+.|.++...
T Consensus       254 ~dp~~R~~~~~~l~~~l~~~~~~  276 (294)
T 4eqm_A          254 KDKANRYKTIQEMKDDLSSVLHE  276 (294)
T ss_dssp             SSGGGSCSSHHHHHHHHHTSSSS
T ss_pred             CCHhHccccHHHHHHHHHHHHhh
Confidence            9999999 999999999887554

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.88  E-value=1.6e-06  Score=87.87  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=55.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++||||||+++.|++||+.|..-...   ......+...............-..+.++...|.+.+|++
T Consensus       180 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  256 (283)
T 3bhy_A          180 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK---QETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKR  256 (283)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGG
T ss_pred             cceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch---HHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhH
Confidence            3544556678899999999999999999999531000   0000000000000000000000123456788999999999


Q ss_pred             CCChHHHHH--HHHhcccc
Q 003931          750 RPSMRFVAQ--ELSAKTQA  766 (785)
Q Consensus       750 Rp~m~~vv~--~l~~~~~~  766 (785)
                      ||++.|+++  .++.++..
T Consensus       257 Rps~~~~l~h~~~~~~~~~  275 (283)
T 3bhy_A          257 RMTIAQSLEHSWIKAIRRR  275 (283)
T ss_dssp             SCCHHHHHHCHHHHHHHHC
T ss_pred             CcCHHHHHhCHHHHHHHHH
Confidence            999999987  45555443

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=97.87  E-value=2.1e-06  Score=87.56  Aligned_cols=85  Identities=20%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-.............-.+.+..+ ....   ..+.++...|.+.+|++
T Consensus       185 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~li~~~l~~dp~~  260 (297)
T 3fxz_A          185 PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP-EKLS---AIFRDFLNRCLEMDVEK  260 (297)
T ss_dssp             HHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCG-GGSC---HHHHHHHHHHSCSSTTT
T ss_pred             hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCc-cccC---HHHHHHHHHHccCChhH
Confidence            3555556678999999999999999999999531000000000000001111110 0111   12345677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       261 Rps~~ell~  269 (297)
T 3fxz_A          261 RGSAKELLQ  269 (297)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhh
Confidence            999999865

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=97.87  E-value=2.2e-06  Score=86.56  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=50.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |.......+.++||||||+++.|++||+.|.+-....   .....+.+...........   ..+.++...|.+.+|++|
T Consensus       186 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~i~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~R  259 (279)
T 2w5a_A          186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK---ELAGKIREGKFRRIPYRYS---DELNEIITRMLNLKDYHR  259 (279)
T ss_dssp             HHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCCTTSC---HHHHHHHHHHTCSSGGGS
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH---HHHHHHhhcccccCCcccC---HHHHHHHHHHcCCCcccC
Confidence            4444556788999999999999999999995411000   0000010111000000111   124466788999999999


Q ss_pred             CChHHHHHHH
Q 003931          751 PSMRFVAQEL  760 (785)
Q Consensus       751 p~m~~vv~~l  760 (785)
                      |++.||++.+
T Consensus       260 ps~~~ll~~~  269 (279)
T 2w5a_A          260 PSVEEILENP  269 (279)
T ss_dssp             CCHHHHHTST
T ss_pred             CCHHHHHhCh
Confidence            9999998654

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=97.86  E-value=1.4e-06  Score=89.93  Aligned_cols=86  Identities=13%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.......+.++|||||||++.|++||+.|..-...   ......+...............-..+.++...|.+.+|++
T Consensus       172 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~  248 (321)
T 1tki_A          172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN---QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKS  248 (321)
T ss_dssp             HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGG
T ss_pred             cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH---HHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhH
Confidence            3544455678899999999999999999999531000   0001111111111100000000123456778999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       249 Rpt~~e~l~  257 (321)
T 1tki_A          249 RMTASEALQ  257 (321)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999987

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.86  E-value=5.6e-06  Score=88.29  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc-----------hhhhccC--ccccccc---------ccCCCCCCCchhHHHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE-----------LITSLSG--ELFLKDV---------LDQRLPPPTGQLAEAVV  733 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~-----------~~~~~~~--~~~~~~~---------~d~~l~~~~~~~~~~~~  733 (785)
                      ...+.++|||||||++.|++||+.|..           +......  ......+         .+..+..........-.
T Consensus       198 ~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  277 (396)
T 4eut_A          198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQV  277 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHh
Confidence            466789999999999999999999953           0000000  0000000         01111111111122233


Q ss_pred             HHHHHHhhcCCCCCCCCCChHHHHHHHHhccc
Q 003931          734 LTINVALACTSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       734 ~~~~ial~C~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+..+.-.|.+.+|++||++.|+.+.+.++-.
T Consensus       278 ~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          278 LLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             HHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             hchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            45577789999999999999999999887633

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.86  E-value=2.2e-06  Score=89.69  Aligned_cols=80  Identities=20%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++|||||||++.|++||+.|..-...   ......+++.............-..+.++.-.|.+.+|++||++.|
T Consensus       251 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  327 (345)
T 3hko_A          251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGVND---ADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMR  327 (345)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCh---HHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHH
Confidence            4567899999999999999999999531100   0001111111111100000000112445677899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      |++
T Consensus       328 ~l~  330 (345)
T 3hko_A          328 ALQ  330 (345)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            976

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.85  E-value=4.9e-06  Score=85.53  Aligned_cols=72  Identities=18%  Similarity=0.134  Sum_probs=45.8

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-hhhhcc-CcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-LITSLS-GELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ..+.++|||||||+++|++||+.|-. -..|.. .......-+.+.+          -..+.++...|.+.+|++||++.
T Consensus       231 ~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~li~~~L~~dP~~Rpt~~  300 (311)
T 3p1a_A          231 SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGL----------SSELRSVLVMMLEPDPKLRATAE  300 (311)
T ss_dssp             CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTS----------CHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCC----------CHHHHHHHHHHcCCChhhCcCHH
Confidence            57889999999999999999977632 111100 0000000001111          12345677889999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      ||++
T Consensus       301 ell~  304 (311)
T 3p1a_A          301 ALLA  304 (311)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9864

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=97.84  E-value=2.6e-06  Score=87.20  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=51.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++||||||+++.|++||+.|.+-...........+...+.+.....      ..+.++...|.+.+|++
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~  261 (303)
T 3a7i_A          188 PEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYS------KPLKEFVEACLNKEPSF  261 (303)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCC------HHHHHHHHHHCCSSGGG
T ss_pred             HHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccC------HHHHHHHHHHcCCChhh
Confidence            355555667889999999999999999999954110000000000000111111111      12456678899999999


Q ss_pred             CCChHHHHHH
Q 003931          750 RPSMRFVAQE  759 (785)
Q Consensus       750 Rp~m~~vv~~  759 (785)
                      ||++.||++.
T Consensus       262 Rps~~~ll~~  271 (303)
T 3a7i_A          262 RPTAKELLKH  271 (303)
T ss_dssp             SCCHHHHTTC
T ss_pred             CcCHHHHhhC
Confidence            9999999764

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=97.83  E-value=2.1e-06  Score=89.37  Aligned_cols=92  Identities=15%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++||||||+++.|++||+.|..-...... ......+.......+.......-..+.++...|.+.+|++
T Consensus       199 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  278 (336)
T 3fhr_A          199 EVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTE  278 (336)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGG
T ss_pred             hhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhH
Confidence            333445667899999999999999999999531100000 0000000000000000000000112446677899999999


Q ss_pred             CCChHHHHH--HHHh
Q 003931          750 RPSMRFVAQ--ELSA  762 (785)
Q Consensus       750 Rp~m~~vv~--~l~~  762 (785)
                      ||++.||++  ++.+
T Consensus       279 Rpt~~ell~hp~~~~  293 (336)
T 3fhr_A          279 RLTITQFMNHPWINQ  293 (336)
T ss_dssp             SCCHHHHHHSHHHHT
T ss_pred             CcCHHHHhcCccccc
Confidence            999999987  4544

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=97.83  E-value=1e-06  Score=89.65  Aligned_cols=79  Identities=20%  Similarity=0.337  Sum_probs=47.4

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCC-CCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPP-PTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ....+.++||||||+++.|++||+.|.+-  +..........++..... .......   .+.++...|.+.+|++||++
T Consensus       187 ~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rpt~  261 (290)
T 3fme_A          187 QKGYSVKSDIWSLGITMIELAILRFPYDS--WGTPFQQLKQVVEEPSPQLPADKFSA---EFVDFTSQCLKKNSKERPTY  261 (290)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHTSCSSCC--CSCHHHHHHHHHHSCCCCCCTTTSCH---HHHHHHHHHTCSSGGGSCCH
T ss_pred             CcCCCcHHHHHHHHHHHHHHHHCCCCccc--cCchHHHHHHHhccCCCCcccccCCH---HHHHHHHHHhhcChhhCcCH
Confidence            44567899999999999999999999641  000000001111111100 0001111   24566778999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .||++
T Consensus       262 ~e~l~  266 (290)
T 3fme_A          262 PELMQ  266 (290)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99977

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.82  E-value=2.2e-06  Score=88.82  Aligned_cols=79  Identities=22%  Similarity=0.296  Sum_probs=46.8

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc---CCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD---QRLPPPT-GQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d---~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      ....+.++||||||++++|++||+.|.+-....  ......+..   +.+.... ...   -..+.++...|.+.+|++|
T Consensus       203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~R  277 (327)
T 3aln_A          203 RQGYDVRSDVWSLGITLYELATGRFPYPKWNSV--FDQLTQVVKGDPPQLSNSEEREF---SPSFINFVNLCLTKDESKR  277 (327)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHSCCCSSCC---------CCCCCSCCCCCCCCSSCCC---CHHHHHHHHHHTCSSGGGS
T ss_pred             cCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH--HHHHHHHhcCCCCCCCCcccccC---CHHHHHHHHHHhhCChhhC
Confidence            345678999999999999999999995311000  001111111   1111100 001   1234567788999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.||++
T Consensus       278 ps~~ell~  285 (327)
T 3aln_A          278 PKYKELLK  285 (327)
T ss_dssp             CCHHHHTT
T ss_pred             cCHHHHHh
Confidence            99999976

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=97.82  E-value=5.3e-06  Score=88.01  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.||+||+.|..
T Consensus       227 PE~~~~~~~~~~~DiwSlG~il~elltg~~pf~  259 (382)
T 2vx3_A          227 PEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS  259 (382)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             hHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            465566678899999999999999999999954

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=97.82  E-value=2.2e-06  Score=86.82  Aligned_cols=80  Identities=13%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++||||||+++.|++||+.|..      ....+....  .....+...    ....   .+.++...|.
T Consensus       176 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~---~~~~li~~~l  246 (284)
T 3kk8_A          176 PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA--YDYPSPEWD----TVTP---EAKSLIDSML  246 (284)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTTTT----TSCH---HHHHHHHHHS
T ss_pred             chhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcc--ccCCchhhc----ccCH---HHHHHHHHHc
Confidence            355555667889999999999999999999953      111100000  000011100    1111   2346677899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.|+++
T Consensus       247 ~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          247 TVNPKKRITADQALK  261 (284)
T ss_dssp             CSSTTTSCCHHHHTT
T ss_pred             ccChhhCCCHHHHhc
Confidence            999999999999976

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=2.2e-06  Score=77.95  Aligned_cols=84  Identities=8%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC-CcccCCccCCCC----CCccEEECCCCC-CcccCChhhhcCCC
Q 003931           29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE-LTLEFPSFILTC----RNLTYLDLSLNK-LSGLIPERLFTNLG  102 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~~~~~~f~~l~  102 (785)
                      .+|+.||++++.|+......+.++++|++|+|++|. ++...-..+..+    ++|++|++++|. +++.--.. +.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcCC
Confidence            478999999998888777778899999999999985 776555556654    479999999984 76433333 36789


Q ss_pred             CCcEEECCCCC
Q 003931          103 KLEYLNLTENQ  113 (785)
Q Consensus       103 ~L~~L~Ls~n~  113 (785)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999875

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.80  E-value=6.8e-06  Score=84.03  Aligned_cols=77  Identities=22%  Similarity=0.367  Sum_probs=47.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhh-------hccCc--ccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELIT-------SLSGE--LFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~-------~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      ...+.++||||||++++|++||+.|.+-..       .....  .......++.......   .   .+.++...|.+.+
T Consensus       202 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~li~~~l~~d  275 (303)
T 2vwi_A          202 RGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYG---K---SFRKMISLCLQKD  275 (303)
T ss_dssp             HCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCC---H---HHHHHHHHHCCSS
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhh---H---HHHHHHHHHccCC
Confidence            346889999999999999999999954110       00000  0011111222211111   1   2446677899999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||++.||++
T Consensus       276 p~~Rps~~~ll~  287 (303)
T 2vwi_A          276 PEKRPTAAELLR  287 (303)
T ss_dssp             GGGSCCHHHHHT
T ss_pred             hhhCcCHHHHhh
Confidence            999999999975

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=97.80  E-value=2.1e-06  Score=88.85  Aligned_cols=86  Identities=16%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-...   ......+...............-..+.++...|.+.+|++
T Consensus       186 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  262 (326)
T 2y0a_A          186 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKK  262 (326)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGG
T ss_pred             ceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH---HHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhh
Confidence            3555556678899999999999999999999530000   0000000000000000000000112346677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       263 Rpt~~e~l~  271 (326)
T 2y0a_A          263 RMTIQDSLQ  271 (326)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHhc
Confidence            999999975

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=97.79  E-value=2e-06  Score=89.18  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|..-....   .....+...............-..+.++...|.+.+|++
T Consensus       202 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  278 (327)
T 3lm5_A          202 PEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ---ETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEK  278 (327)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGG
T ss_pred             CeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch---HHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhh
Confidence            35555567789999999999999999999995310000   000000000000000000000112446678899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       279 Rpt~~~ll~  287 (327)
T 3lm5_A          279 RPTAEICLS  287 (327)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhC
Confidence            999999865

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.79  E-value=6.8e-06  Score=83.46  Aligned_cols=72  Identities=17%  Similarity=0.262  Sum_probs=47.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCch-------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGEL-------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~-------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      ...+.++||||+|++++|++||+.|..-       ...+.. .......+...          ...+.++...|.+.+|+
T Consensus       204 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~l~~li~~~l~~dp~  272 (290)
T 1t4h_A          204 EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS-GVKPASFDKVA----------IPEVKEIIEGCIRQNKD  272 (290)
T ss_dssp             TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTT-TCCCGGGGGCC----------CHHHHHHHHHHSCSSGG
T ss_pred             ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhc-cCCccccCCCC----------CHHHHHHHHHHccCChh
Confidence            3478899999999999999999999531       111100 00000111110          12345677889999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||++.||++
T Consensus       273 ~Rps~~ell~  282 (290)
T 1t4h_A          273 ERYSIKDLLN  282 (290)
T ss_dssp             GSCCHHHHHT
T ss_pred             hCCCHHHHhh
Confidence            9999999864

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=97.79  E-value=3.1e-06  Score=89.37  Aligned_cols=86  Identities=16%  Similarity=0.056  Sum_probs=51.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||+++||+||+.|..-...   ......++..............-..+.++...|.+.+|++
T Consensus       257 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~  333 (373)
T 2x4f_A          257 PEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND---AETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSW  333 (373)
T ss_dssp             HHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGG
T ss_pred             hhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhh
Confidence            4555556778899999999999999999999530000   0000111111100000000000112456678999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       334 Rps~~e~l~  342 (373)
T 2x4f_A          334 RISASEALK  342 (373)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHhc
Confidence            999999987

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.79  E-value=8.6e-06  Score=87.27  Aligned_cols=74  Identities=7%  Similarity=-0.112  Sum_probs=47.4

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      .....+.++|||||||++.||+||+.|.+-...   ......++.... .   .. +   .+.++...|.+.+|++||++
T Consensus       290 ~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~-~---~~-~---~~~~li~~~l~~dP~~Rpt~  358 (413)
T 3dzo_A          290 HPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAA---LGGSEWIFRSCK-N---IP-Q---PVRALLEGFLRYPKEDRLLP  358 (413)
T ss_dssp             CCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGG---GSCSGGGGSSCC-C---CC-H---HHHHHHHHHTCSSGGGSCCH
T ss_pred             cCcCCCchhhHHHHHHHHHHHHHCCCCCCCcch---hhhHHHHHhhcc-c---CC-H---HHHHHHHHHccCChhhCcCH
Confidence            444578899999999999999999999531111   011111111110 0   11 2   24456678999999999998


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .|+++
T Consensus       359 ~~~l~  363 (413)
T 3dzo_A          359 LQAME  363 (413)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            77643

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=97.78  E-value=1.3e-06  Score=90.48  Aligned_cols=88  Identities=15%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC----cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG----ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      |+-.....+.++|||||||++.|++||+.|.+-......    ......+...............-..+.++...|.+.+
T Consensus       179 E~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  258 (325)
T 3kn6_A          179 ELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVD  258 (325)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCC
T ss_pred             HHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCC
Confidence            443445567899999999999999999999541110000    0001111111111111110111123456677899999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||++.||++
T Consensus       259 P~~Rpt~~ell~  270 (325)
T 3kn6_A          259 PNKRLKMSGLRY  270 (325)
T ss_dssp             TTTCCCTTTSTT
T ss_pred             hhHCCCHHHHhc
Confidence            999999999863

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=97.78  E-value=2e-06  Score=86.96  Aligned_cols=80  Identities=24%  Similarity=0.328  Sum_probs=50.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|.......+.++||||||++++|++||+.|.+-.....   ....+.  +......   ..+   .+.++...|.+.+|
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~---~~~---~~~~li~~~l~~~p  246 (279)
T 3fdn_A          176 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE---TYKRISRVEFTFPDF---VTE---GARDLISRLLKHNP  246 (279)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHHHHTCCCCCTT---SCH---HHHHHHHHHCCSSG
T ss_pred             HhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH---HHHHHHhCCCCCCCc---CCH---HHHHHHHHHhccCh
Confidence            355555667889999999999999999999954111000   000010  1111110   111   23456778999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.||++
T Consensus       247 ~~Rps~~e~l~  257 (279)
T 3fdn_A          247 SQRPMLREVLE  257 (279)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hhCCCHHHHhh
Confidence            99999999986

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=97.77  E-value=1.6e-06  Score=86.40  Aligned_cols=81  Identities=19%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             hhhhhcc-cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMR-VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~-~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |.-.... .+.++||||+||++.||+||+.|.+-...   ......+......-+. ....+   +.++...|.+.+|++
T Consensus       181 E~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dP~~  253 (275)
T 3hyh_A          181 EVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI---PVLFKNISNGVYTLPK-FLSPG---AAGLIKRMLIVNPLN  253 (275)
T ss_dssp             HHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCT-TSCHH---HHHHHHHHSCSSGGG
T ss_pred             hhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCHH---HHHHHHHHccCChhH
Confidence            4433333 35789999999999999999999530000   0000011111111010 11112   234566899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      |||+.|+.+
T Consensus       254 R~s~~eil~  262 (275)
T 3hyh_A          254 RISIHEIMQ  262 (275)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHc
Confidence            999999865

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=97.77  E-value=7.2e-06  Score=83.06  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=46.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhh--hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELIT--SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ...+.++||||||+++.|++||+.|..-..  .+...   .....+...........   .+.++...|.+.+|++||++
T Consensus       200 ~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~li~~~L~~dP~~Rps~  273 (285)
T 3is5_A          200 RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQK---ATYKEPNYAVECRPLTP---QAVDLLKQMLTKDPERRPSA  273 (285)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---HHHCCCCCCC--CCCCH---HHHHHHHHHTCSCTTTSCCH
T ss_pred             cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhh---hccCCcccccccCcCCH---HHHHHHHHHccCChhhCcCH
Confidence            356789999999999999999999954110  00000   00000111000000011   23466778999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .||++
T Consensus       274 ~e~l~  278 (285)
T 3is5_A          274 AQVLH  278 (285)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99864

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=97.77  E-value=4e-06  Score=86.64  Aligned_cols=86  Identities=13%  Similarity=0.090  Sum_probs=50.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.......+.++||||||+++.|++||+.|..-...   ......+...............-..+.++...|.+.+|++
T Consensus       187 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  263 (321)
T 2a2a_A          187 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRK  263 (321)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTT
T ss_pred             cccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhh
Confidence            3544556678899999999999999999999531000   0000001110000000000000112456778999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       264 Rps~~e~l~  272 (321)
T 2a2a_A          264 RLTIQEALR  272 (321)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999975

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=97.76  E-value=4.5e-06  Score=89.05  Aligned_cols=88  Identities=16%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.....+.++|||||||++.||+||+.|..-...... ......+.......+.......-..+.++.-.|.+.+|++
T Consensus       233 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  312 (400)
T 1nxk_A          233 EVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQ  312 (400)
T ss_dssp             GGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGG
T ss_pred             hhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhH
Confidence            444455678899999999999999999999531100000 0000000000000000000000112456678999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       313 Rpt~~eil~  321 (400)
T 1nxk_A          313 RMTITEFMN  321 (400)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999976

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=97.76  E-value=5.8e-06  Score=93.94  Aligned_cols=84  Identities=25%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.|++| |+.|..      ....+....      .+....   ..   -..+.++...|
T Consensus       561 PE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~------~~~~~~---~~---~~~l~~li~~~  628 (656)
T 2j0j_A          561 PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE------RLPMPP---NC---PPTLYSLMTKC  628 (656)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTC------CCCCCT---TC---CHHHHHHHHHH
T ss_pred             HHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC------CCCCCc---cc---cHHHHHHHHHH
Confidence            455556678899999999999999997 888853      111111000      001111   11   12345677899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+.+|++||+|.||+++|+++..
T Consensus       629 l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          629 WAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCChhHCcCHHHHHHHHHHHHH
Confidence            99999999999999999988743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=1.1e-05  Score=73.29  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=34.1

Q ss_pred             CCCEEEcccCcccccCCccccCCCCCCEEEcccCc-CcccCCccccCC----cccCeeeccccc-cccCCchhccCCCCC
Q 003931          151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-LNYTIPPELGLC----TNLSYLALAVNQ-LSGGLPLSLSNLSKL  224 (785)
Q Consensus       151 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~l~~l~~L  224 (785)
                      .|+.||+++|.++...-..+..+++|++|+|++|. ++...-..+..+    ++|++|++++|. +++.--..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44555555554443333334445555555555543 332222222221    234444444442 433222333444444


Q ss_pred             CEEEccCC
Q 003931          225 NDLGLSDN  232 (785)
Q Consensus       225 ~~L~L~~n  232 (785)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444444

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=97.75  E-value=2.6e-06  Score=90.14  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|.-.....+.++|||||||++.|++||+.|.+
T Consensus       204 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  236 (373)
T 1q8y_A          204 PEVLLGAPWGCGADIWSTACLIFELITGDFLFE  236 (373)
T ss_dssp             HHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             cHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            355555667899999999999999999999954

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=97.74  E-value=5.8e-06  Score=84.82  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---cccccc------cccCCCCCCCchh-H
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELFLKD------VLDQRLPPPTGQL-A  729 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~~~~------~~d~~l~~~~~~~-~  729 (785)
                      +|.-.....+.++|||||||++.|++||+.|..          +......   ..+...      .+.+......... .
T Consensus       188 PE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (308)
T 3g33_A          188 PEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVP  267 (308)
T ss_dssp             HHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSC
T ss_pred             chHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCc
Confidence            455556678899999999999999999999963          1110000   011000      0111100000000 0


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          730 EAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       730 ~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.-..+.++...|.+.+|++||++.|+++
T Consensus       268 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          268 EMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             SCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            00123456778899999999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=97.73  E-value=1.7e-05  Score=84.59  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.++|||||||++.||+||+.|.+
T Consensus       262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~  294 (397)
T 1wak_A          262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFE  294 (397)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCC
Confidence            355555667899999999999999999999853

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=97.73  E-value=5.4e-06  Score=85.94  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++|||||||++.|++||+.|.+-...   ......+.......+. ....   .+.++.-.|.+.+|++||++.|+++
T Consensus       186 ~~~~DiwslG~il~~ll~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~---~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          186 GPEVDVWSCGIVLYVMLVGRLPFDDEFI---PNLFKKVNSCVYVMPD-FLSP---GAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSBCSSS---TTCBCCCCSSCCCCCT-TSCH---HHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             CCccchhHHHHHHHHHHhCCCCCCCccH---HHHHHHHHcCCCCCcc-cCCH---HHHHHHHHHcCCChhHCcCHHHHHh
Confidence            5789999999999999999999641100   0001111111110010 1111   2345677899999999999999975

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=97.73  E-value=1.1e-05  Score=83.62  Aligned_cols=75  Identities=12%  Similarity=0.243  Sum_probs=48.6

Q ss_pred             hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-..... +.++|||||||++.|++||+.|..-..         +..+.....+.... .   .+.++...|.+.+|++
T Consensus       199 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---------~~~~~~~~~~~~~~-~---~l~~li~~~L~~dP~~  265 (335)
T 3dls_A          199 EVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE---------ETVEAAIHPPYLVS-K---ELMSLVSGLLQPVPER  265 (335)
T ss_dssp             HHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG---------GGTTTCCCCSSCCC-H---HHHHHHHHHTCSSGGG
T ss_pred             hhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH---------HHHhhccCCCcccC-H---HHHHHHHHHccCChhh
Confidence            44334444 778999999999999999999953111         11111111111111 1   2345667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       266 Rps~~ell~  274 (335)
T 3dls_A          266 RTTLEKLVT  274 (335)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999976

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.72  E-value=9.3e-06  Score=83.40  Aligned_cols=93  Identities=20%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.|++||+.|.+-....   .....................-..+.++...|.+.+|++
T Consensus       188 PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  264 (311)
T 3ork_A          188 PEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV---SVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPEN  264 (311)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH---HHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhh
Confidence            35555667788999999999999999999995310000   000000000000000000000112446678899999999


Q ss_pred             CCChHHHH-HHHHhccc
Q 003931          750 RPSMRFVA-QELSAKTQ  765 (785)
Q Consensus       750 Rp~m~~vv-~~l~~~~~  765 (785)
                      ||++.+++ +.+.++..
T Consensus       265 R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          265 RYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             SCSSHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHHHHHHhc
Confidence            99777655 45555443

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=97.72  E-value=6.3e-06  Score=87.02  Aligned_cols=85  Identities=18%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-......-..+.+...+.+.... ....+   +..+.-.|...+|++
T Consensus       316 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~-~~s~~---~~dli~~~L~~dP~~  391 (423)
T 4fie_A          316 PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLH-KVSPS---LKGFLDRLLVRDPAQ  391 (423)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTT-SSCHH---HHHHHHHHSCSSTTT
T ss_pred             HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccc-cCCHH---HHHHHHHHcCCChhH
Confidence            45555566789999999999999999999995300000000001111112221111 11112   234566899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+.+
T Consensus       392 R~ta~ell~  400 (423)
T 4fie_A          392 RATAAELLK  400 (423)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999998854

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=97.72  E-value=5.8e-06  Score=85.11  Aligned_cols=84  Identities=17%  Similarity=0.279  Sum_probs=50.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+......+.++||||||+++.|++||+.|..-...............+....+ ....   ..+.++...|.+.+|++|
T Consensus       195 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~li~~~l~~dp~~R  270 (314)
T 3com_A          195 EVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKP-ELWS---DNFTDFVKQCLVKSPEQR  270 (314)
T ss_dssp             HHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSG-GGSC---HHHHHHHHHHTCSCTTTS
T ss_pred             hhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCc-ccCC---HHHHHHHHHHccCChhhC
Confidence            444455678899999999999999999999541110000000000001111100 0001   124466778999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.+|++
T Consensus       271 pt~~~ll~  278 (314)
T 3com_A          271 ATATQLLQ  278 (314)
T ss_dssp             CCHHHHTT
T ss_pred             cCHHHHHh
Confidence            99999975

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=97.72  E-value=1.2e-05  Score=84.35  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|.-.....+.++|||||||++.||+||+.|..
T Consensus       208 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  240 (355)
T 2eu9_A          208 PEVILELGWAQPCDVWSIGCILFEYYRGFTLFQ  240 (355)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CeeeecCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence            355455667899999999999999999999954

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=97.71  E-value=3.9e-06  Score=87.85  Aligned_cols=85  Identities=13%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||+.|..-..    +.....+...............-..+.++...|.+.+|++
T Consensus       202 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  277 (351)
T 3c0i_A          202 PEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK----ERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAE  277 (351)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH----HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTT
T ss_pred             HHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH----HHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhH
Confidence            354445567899999999999999999999953100    0000111111110000000000112446677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       278 R~s~~e~l~  286 (351)
T 3c0i_A          278 RITVYEALN  286 (351)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhc
Confidence            999999975

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=97.71  E-value=4.5e-06  Score=86.29  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=47.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccc-cccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKD-VLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||++.|++||+.|.+-...   .....+ +.+.............-..+.++...|.+.+|++||++.
T Consensus       194 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~  270 (322)
T 2ycf_A          194 AGYNRAVDCWSLGVILFICLSGYPPFSEHRT---QVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE  270 (322)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC---SSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCcccch---HHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHH
Confidence            4567899999999999999999999531100   000000 001111000000000112345677899999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      |+++
T Consensus       271 ~~l~  274 (322)
T 2ycf_A          271 EALR  274 (322)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=97.71  E-value=2.3e-06  Score=89.39  Aligned_cols=77  Identities=19%  Similarity=0.297  Sum_probs=47.8

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP  751 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp  751 (785)
                      ....+.++|||||||+++||+||+.|..-   ...+..   ...-..+.....  ...+.   +.++...|.+.+|++||
T Consensus       227 ~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~---l~~li~~~l~~dP~~Rp  298 (348)
T 1u5q_A          227 EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH---IAQNESPALQSG--HWSEY---FRNFVDSCLQKIPQDRP  298 (348)
T ss_dssp             SCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH---HHHSCCCCCCCT--TSCHH---HHHHHHHHTCSSGGGSC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHhcCCCCCCCC--CCCHH---HHHHHHHHcccChhhCc
Confidence            35678899999999999999999999531   000000   000001111110  11112   33566789999999999


Q ss_pred             ChHHHHHH
Q 003931          752 SMRFVAQE  759 (785)
Q Consensus       752 ~m~~vv~~  759 (785)
                      ++.+|++.
T Consensus       299 s~~~ll~h  306 (348)
T 1u5q_A          299 TSEVLLKH  306 (348)
T ss_dssp             CHHHHTTC
T ss_pred             CHHHHhhC
Confidence            99998753

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=97.71  E-value=4.8e-06  Score=84.29  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=54.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++||||||+++.|++||+.|.+-....   .....+.......+. ....   .+.++...|.+.+|++
T Consensus       181 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~  253 (284)
T 2vgo_A          181 PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT---ETHRRIVNVDLKFPP-FLSD---GSKDLISKLLRYHPPQ  253 (284)
T ss_dssp             HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHTTCCCCCT-TSCH---HHHHHHHHHSCSSGGG
T ss_pred             HHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh---HHHHHHhccccCCCC-cCCH---HHHHHHHHHhhcCHhh
Confidence            35555566789999999999999999999995411000   000111111111110 1111   2345677899999999


Q ss_pred             CCChHHHHH--HHHhccc
Q 003931          750 RPSMRFVAQ--ELSAKTQ  765 (785)
Q Consensus       750 Rp~m~~vv~--~l~~~~~  765 (785)
                      ||++.||++  .+.....
T Consensus       254 Rps~~~ll~h~~~~~~~~  271 (284)
T 2vgo_A          254 RLPLKGVMEHPWVKANSR  271 (284)
T ss_dssp             SCCHHHHHTCHHHHHHCC
T ss_pred             CCCHHHHhhCHHHHhhcc
Confidence            999999986  4554443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=97.71  E-value=3.8e-06  Score=88.44  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=28.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.++|||||||++.||+||+.|..
T Consensus       228 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  260 (360)
T 3llt_A          228 PEVILNLGWDVSSDMWSFGCVLAELYTGSLLFR  260 (360)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cHHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence            455556678899999999999999999999953

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=97.70  E-value=2.3e-06  Score=86.43  Aligned_cols=77  Identities=21%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.....+.++||||+||++.||+||+.|..-...   ......+.......+. ....+   +..+.-.|.+.+|++
T Consensus       195 PE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dP~~  267 (304)
T 3ubd_A          195 PEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR---KETMTMILKAKLGMPQ-FLSPE---AQSLLRMLFKRNPAN  267 (304)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSSGGG
T ss_pred             HHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH---HHHHHHHHcCCCCCCC-cCCHH---HHHHHHHHcccCHHH
Confidence            4555566778999999999999999999999530000   0000111111111111 11112   234566899999999


Q ss_pred             CCCh
Q 003931          750 RPSM  753 (785)
Q Consensus       750 Rp~m  753 (785)
                      ||+.
T Consensus       268 R~ta  271 (304)
T 3ubd_A          268 RLGA  271 (304)
T ss_dssp             STTC
T ss_pred             CCCC
Confidence            9984

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.70  E-value=7.9e-06  Score=83.17  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCc--ccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGE--LFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      .+.++||||||++++|++||+.|..-.......  .....-..+.+...   ...   .+.++...|.+.+|++||++.|
T Consensus       202 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~li~~~l~~dp~~Rps~~~  275 (295)
T 2clq_A          202 YGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPES---MSA---EAKAFILKCFEPDPDKRACAND  275 (295)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTT---SCH---HHHHHHHHTTCSSTTTSCCHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccccccccccc---CCH---HHHHHHHHHccCChhhCCCHHH
Confidence            678999999999999999999995311000000  00000111222111   111   2345678899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      |++
T Consensus       276 ll~  278 (295)
T 2clq_A          276 LLV  278 (295)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.69  E-value=1.1e-05  Score=83.01  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc---cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL---DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP  751 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~---d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp  751 (785)
                      ....+.++|||||||++.|++||+.|.+-...  .......+.   .+.+.... ....   .+.++...|.+.+|++||
T Consensus       203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~---~l~~li~~~l~~dp~~Rp  276 (318)
T 2dyl_A          203 KPDYDIRADVWSLGISLVELATGQFPYKNCKT--DFEVLTKVLQEEPPLLPGHM-GFSG---DFQSFVKDCLTKDHRKRP  276 (318)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSSCTTTTCCS--HHHHHHHHHHSCCCCCCSSS-CCCH---HHHHHHHHHTCSCTTTSC
T ss_pred             ccCCccccchhhHHHHHHHHHhCCCCCCCCCc--cHHHHHHHhccCCCCCCccC-CCCH---HHHHHHHHHccCChhHCc
Confidence            34567899999999999999999999531000  000000010   01111100 0111   234567789999999999


Q ss_pred             ChHHHHH
Q 003931          752 SMRFVAQ  758 (785)
Q Consensus       752 ~m~~vv~  758 (785)
                      ++.||++
T Consensus       277 s~~~ll~  283 (318)
T 2dyl_A          277 KYNKLLE  283 (318)
T ss_dssp             CHHHHTT
T ss_pred             CHHHHhh
Confidence            9999876

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=97.69  E-value=4.3e-06  Score=86.20  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchh-----hhccCcc-------cccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELI-----TSLSGEL-------FLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~-----~~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      ...+.++|||||||++.||+||+.|..-.     .|.....       ....+.+.....+.......-..+.++...|.
T Consensus       201 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L  280 (316)
T 2ac3_A          201 SIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLL  280 (316)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHS
T ss_pred             cCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHh
Confidence            45788999999999999999999995311     0100000       00111111111100000000123456788999


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.||++
T Consensus       281 ~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          281 VRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             CSSTTTSCCHHHHHH
T ss_pred             hCChhhCCCHHHHhc
Confidence            999999999999965

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=97.69  E-value=5.4e-06  Score=85.58  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+...... +.++|||||||++.|++||+.|.+-.......   .....+.+       .+   .+.++...|.+.+|++
T Consensus       218 E~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~---~~~~~~~~-------~~---~~~~li~~~l~~dp~~  284 (320)
T 3a99_A          218 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRG---QVFFRQRV-------SS---ECQHLIRWCLALRPSD  284 (320)
T ss_dssp             HHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHC---CCCCSSCC-------CH---HHHHHHHHHTCSSGGG
T ss_pred             HHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhhhcc---cccccccC-------CH---HHHHHHHHHccCChhh
Confidence            43333333 67899999999999999999995411110000   00011111       11   2346677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       285 Rps~~~ll~  293 (320)
T 3a99_A          285 RPTFEEIQN  293 (320)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhc
Confidence            999999965

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=97.69  E-value=7.1e-06  Score=82.62  Aligned_cols=75  Identities=15%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      +.++||||||+++.|++||+.|.+-....  ......+...... ........   .+.++...|.+.+|++||++.||+
T Consensus       186 ~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~~il  260 (276)
T 2yex_A          186 AEPVDVWSCGIVLTAMLAGELPWDQPSDS--CQEYSDWKEKKTYLNPWKKIDS---APLALLHKILVENPSARITIPDIK  260 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCSCTT--SHHHHHHHTTCTTSTTGGGSCH---HHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             CCcchHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHhhhcccccCchhhcCH---HHHHHHHHHCCCCchhCCCHHHHh
Confidence            67899999999999999999995411000  0000000000000 00001111   234667889999999999999986


Q ss_pred             H
Q 003931          758 Q  758 (785)
Q Consensus       758 ~  758 (785)
                      +
T Consensus       261 ~  261 (276)
T 2yex_A          261 K  261 (276)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=97.68  E-value=4.4e-06  Score=85.06  Aligned_cols=82  Identities=16%  Similarity=0.252  Sum_probs=50.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.......+.++||||||+++.|++||+.|.+-....   .....+.......+. ....   .+.++...|.+.+|++
T Consensus       184 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~  256 (294)
T 2rku_A          184 PEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---ETYLRIKKNEYSIPK-HINP---VAASLIQKMLQTDPTA  256 (294)
T ss_dssp             HHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHTTCCCCCT-TSCH---HHHHHHHHHTCSSGGG
T ss_pred             cchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHhhccCCCcc-ccCH---HHHHHHHHHcccChhh
Confidence            35545556788999999999999999999995411000   000001111111000 1111   2345677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       257 Rps~~~ll~  265 (294)
T 2rku_A          257 RPTINELLN  265 (294)
T ss_dssp             SCCGGGGGG
T ss_pred             CcCHHHHhh
Confidence            999999976

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=97.68  E-value=3.1e-06  Score=88.11  Aligned_cols=86  Identities=15%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC--CC-CchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP--PP-TGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~--~~-~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...-........+......  .. .....+   .+.++.-.|.+.+
T Consensus       189 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~---~~~~li~~~L~~d  265 (342)
T 2qr7_A          189 PEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSD---TAKDLVSKMLHVD  265 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCH---HHHHHHHHHTCSS
T ss_pred             HHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCH---HHHHHHHHHCCCC
Confidence            34444455678999999999999999999995310000000000001111110  00 001112   2345667899999


Q ss_pred             CCCCCChHHHHH
Q 003931          747 PDTRPSMRFVAQ  758 (785)
Q Consensus       747 p~~Rp~m~~vv~  758 (785)
                      |++||++.||++
T Consensus       266 P~~R~t~~~il~  277 (342)
T 2qr7_A          266 PHQRLTAALVLR  277 (342)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=97.66  E-value=1e-05  Score=83.06  Aligned_cols=83  Identities=14%  Similarity=0.233  Sum_probs=48.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC-----------ccccc--ccccCCCCCCCch-hHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG-----------ELFLK--DVLDQRLPPPTGQ-LAEA  731 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~-----------~~~~~--~~~d~~l~~~~~~-~~~~  731 (785)
                      ...+.++|||||||++.|++||+.|..          +......           .....  .+-++.-...... ....
T Consensus       178 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 4agu_A          178 TQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNI  257 (311)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTC
T ss_pred             CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccc
Confidence            456889999999999999999999953          0000000           00000  0111110000000 0001


Q ss_pred             HHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          732 VVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      -..+.++...|.+.+|++||++.||++
T Consensus       258 ~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          258 SYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             CHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            123557788999999999999999975

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=97.66  E-value=1.1e-05  Score=87.10  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             cccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          676 MRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ...+.++|||||||++.|++| |+.|.+-... ..........+. .....  .....-..+.++...|.+.+|++||+|
T Consensus       214 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~-~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~  290 (434)
T 2rio_A          214 RRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS-RESNIIRGIFSLDEMKCL--HDRSLIAEATDLISQMIDHDPLKRPTA  290 (434)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT-HHHHHHHTCCCCCCCTTC--CCHHHHHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCcchhhhhHhHHHHHHHHHhCCCCCCCCchh-hHHHHhcCCCCccccccc--ccccchHHHHHHHHHHhhCChhhCCCH
Confidence            567899999999999999999 8998531000 000000001110 01000  111122345677889999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .||++
T Consensus       291 ~eil~  295 (434)
T 2rio_A          291 MKVLR  295 (434)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99975

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=97.66  E-value=1.8e-05  Score=85.12  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+......+.++|||||||++.||+||+.|.
T Consensus       268 PE~~~~~~~~~~~DiwSlG~il~elltG~~pf  299 (429)
T 3kvw_A          268 PEVILGARYGMPIDMWSLGCILAELLTGYPLL  299 (429)
T ss_dssp             HHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             hHHHhCCCCCchHHHHhHHHHHHHHHhCCCCC
Confidence            46666677899999999999999999999885

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=97.65  E-value=6.1e-06  Score=88.61  Aligned_cols=80  Identities=16%  Similarity=0.161  Sum_probs=47.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccc-cccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKD-VLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ...+.++|||||||++.|++||+.|..-..   ......+ +...............-..+.++...|.+.+|++||++.
T Consensus       319 ~~~~~~~DiwslG~il~~lltg~~pf~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  395 (419)
T 3i6u_A          319 AGYNRAVDCWSLGVILFICLSGYPPFSEHR---TQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE  395 (419)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHSSCSSCCCS---SSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCchhhhHhHHHHHHHHHHCCCCCCCCc---chHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHH
Confidence            445789999999999999999999953100   0000000 011111000000000112345677889999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      |+++
T Consensus       396 e~l~  399 (419)
T 3i6u_A          396 EALR  399 (419)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=97.65  E-value=1.2e-05  Score=81.77  Aligned_cols=31  Identities=16%  Similarity=0.276  Sum_probs=25.1

Q ss_pred             hhhhhcc-cccccceeeeehhhhhhhhCCCCC
Q 003931          671 ELAVTMR-VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       671 e~~~~~~-~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      |+-.... .+.++|||||||++.|++||+.|.
T Consensus       171 E~~~~~~~~~~~~DiwslG~il~~l~~~~~p~  202 (292)
T 3o0g_A          171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             HHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             HHHcCCCCcCchHHHHHHHHHHHHHHHcCCCC
Confidence            4433333 688999999999999999999983

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=97.64  E-value=8e-06  Score=88.08  Aligned_cols=80  Identities=13%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|.-.....+.++||||+||++.|++||+.|..      +...+....  .+.-.+...    ....   .+.++...|.
T Consensus       182 PE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~----~~s~---~~~~li~~~L  252 (444)
T 3soa_A          182 PEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGA--YDFPSPEWD----TVTP---EAKDLINKML  252 (444)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC--CCCCTTTTT----TSCH---HHHHHHHHHS
T ss_pred             HHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCC--CCCCccccc----cCCH---HHHHHHHHHc
Confidence            354445567889999999999999999999952      111110000  000011110    1111   2345667899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.|+++
T Consensus       253 ~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          253 TINPSKRITAAEALK  267 (444)
T ss_dssp             CSSTTTSCCHHHHHH
T ss_pred             CCChhHCCCHHHHhc
Confidence            999999999999976

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=97.64  E-value=6e-06  Score=86.94  Aligned_cols=79  Identities=13%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++|||||||++.|++||+.|..-...   ......+...............-..+.++...|.+.+|++||++.||
T Consensus       281 ~~~~~~Di~slG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~el  357 (365)
T 2y7j_A          281 GYGKEVDLWACGVILFTLLAGSPPFWHRRQ---ILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQA  357 (365)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCchhhHHhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            467899999999999999999999531000   00000011111100000000001234567788999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       358 l~  359 (365)
T 2y7j_A          358 LQ  359 (365)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=97.64  E-value=4.2e-06  Score=84.41  Aligned_cols=79  Identities=14%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++||||||++++|++||+.|..-...   ......+.......+.......-..+.++...|.+.+|++||++.|+
T Consensus       183 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~  259 (277)
T 3f3z_A          183 LYGPECDEWSAGVMMYVLLCGYPPFSAPTD---SEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQA  259 (277)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             cCCchhhehhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            478899999999999999999999531000   00000111111100000000001234466788999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       260 l~  261 (277)
T 3f3z_A          260 LE  261 (277)
T ss_dssp             TT
T ss_pred             hc
Confidence            75

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=97.63  E-value=5.5e-06  Score=87.06  Aligned_cols=86  Identities=10%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+......+.++|||||||++.||+||+.|..-...   ......+.......+.......-..+.++...|.+.+|++
T Consensus       199 PE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  275 (362)
T 2bdw_A          199 PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ---HRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKK  275 (362)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGG
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhh
Confidence            3555555678899999999999999999999520000   0000000000000000000000112345677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       276 R~t~~e~l~  284 (362)
T 2bdw_A          276 RITADQALK  284 (362)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999999865

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=97.63  E-value=7.7e-06  Score=83.60  Aligned_cols=80  Identities=19%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ....+.++||||||+++.|++||+.|.+-...............+....+ ....   ..+.++...|.+.+|++||++.
T Consensus       196 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~li~~~l~~dp~~Rps~~  271 (302)
T 2j7t_A          196 DTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTP-SKWS---VEFRDFLKIALDKNPETRPSAA  271 (302)
T ss_dssp             STTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSG-GGSC---HHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCc-cccC---HHHHHHHHHHcccChhhCCCHH
Confidence            34567899999999999999999999641110000000000000111000 0111   1244667789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      +|++
T Consensus       272 ~ll~  275 (302)
T 2j7t_A          272 QLLE  275 (302)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            9854

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=97.63  E-value=6.1e-06  Score=85.90  Aligned_cols=33  Identities=24%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|.-.....+.++|||||||++.|++||+.|..
T Consensus       203 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  235 (339)
T 1z57_A          203 PEVILALGWSQPCDVWSIGCILIEYYLGFTVFP  235 (339)
T ss_dssp             HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             hHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence            355555667899999999999999999999953

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=97.62  E-value=8.8e-06  Score=84.02  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      +.++|||||||++.|++||+.|.+-....  .....+....... .......   ..+.++...|.+.+|++||++.||+
T Consensus       186 ~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~L~~dP~~R~t~~eil  260 (323)
T 3tki_A          186 AEPVDVWSCGIVLTAMLAGELPWDQPSDS--CQEYSDWKEKKTYLNPWKKID---SAPLALLHKILVENPSARITIPDIK  260 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCSSSCTT--SHHHHHHHTTCTTSTTGGGSC---HHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             CCcccHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHHhcccccCCccccCC---HHHHHHHHHHccCChhhCcCHHHHh
Confidence            67899999999999999999995310000  0000000000000 0000111   1234667789999999999999986


Q ss_pred             H
Q 003931          758 Q  758 (785)
Q Consensus       758 ~  758 (785)
                      +
T Consensus       261 ~  261 (323)
T 3tki_A          261 K  261 (323)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=97.62  E-value=1e-05  Score=83.06  Aligned_cols=27  Identities=19%  Similarity=0.370  Sum_probs=23.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.++||||+||++.|++||+.|..
T Consensus       195 ~~~~~~~DiwslG~il~~ll~g~~pf~  221 (311)
T 3niz_A          195 KKYSTSVDIWSIGCIFAEMITGKPLFP  221 (311)
T ss_dssp             CSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCCchHHhHHHHHHHHHHHhCCCCCC
Confidence            356889999999999999999999853

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=97.62  E-value=6.1e-06  Score=87.38  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+......+.++|||||||++.||+||+.|..      ....+....+   ..++....   ...   ..+.++...|.
T Consensus       219 PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~---~~s---~~~~~li~~~L  289 (387)
T 1kob_A          219 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW---EFDEDAFS---SVS---PEAKDFIKNLL  289 (387)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCC---CCCSSTTT---TSC---HHHHHHHHTTS
T ss_pred             chhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCccccc---cCC---HHHHHHHHHHc
Confidence            355555667889999999999999999999953      1111100000   01111100   011   12446678999


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.|+++
T Consensus       290 ~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          290 QKEPRKRLTVHDALE  304 (387)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             CCChhHCcCHHHHhh
Confidence            999999999999975

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=97.62  E-value=6.3e-06  Score=85.53  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=51.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.|++||..|..-....     ...+......   .........+.++...|.+.+|++
T Consensus       245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~  316 (332)
T 3qd2_B          245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRI-----ITDVRNLKFP---LLFTQKYPQEHMMVQDMLSPSPTE  316 (332)
T ss_dssp             HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHTTCCC---HHHHHHCHHHHHHHHHHHCSSGGG
T ss_pred             hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHH-----HHHhhccCCC---cccccCChhHHHHHHHHccCCCCc
Confidence            35555567789999999999999999998874311000     0001111110   011111223456778899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       317 Rps~~~~l~  325 (332)
T 3qd2_B          317 RPEATDIIE  325 (332)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHhh
Confidence            999999874

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=97.61  E-value=4.2e-06  Score=85.78  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      .+.++||||||+++.|++||+.|.+-....   .....+.......+. ...   ..+.++...|.+.+|++||++.|++
T Consensus       190 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~i~~~~~~~~~-~~~---~~l~~li~~~l~~dp~~Rps~~~ll  262 (305)
T 2wtk_C          190 SGFKVDIWSAGVTLYNITTGLYPFEGDNIY---KLFENIGKGSYAIPG-DCG---PPLSDLLKGMLEYEPAKRFSIRQIR  262 (305)
T ss_dssp             ESHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHCCCCCCS-SSC---HHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHhCCCCCCCchHH---HHHHHHhcCCCCCCC-ccC---HHHHHHHHHHccCChhhCCCHHHHh
Confidence            467999999999999999999995410000   000000011110000 111   1234667789999999999999998


Q ss_pred             H--HHHhc
Q 003931          758 Q--ELSAK  763 (785)
Q Consensus       758 ~--~l~~~  763 (785)
                      +  .+.+.
T Consensus       263 ~~~~~~~~  270 (305)
T 2wtk_C          263 QHSWFRKK  270 (305)
T ss_dssp             HSHHHHSC
T ss_pred             cCcccccC
Confidence            6  35443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=97.60  E-value=1.4e-05  Score=82.63  Aligned_cols=89  Identities=17%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---ccccccc------ccCCCCCCCch-hH
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELFLKDV------LDQRLPPPTGQ-LA  729 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~~~~~------~d~~l~~~~~~-~~  729 (785)
                      +|+......+.++|||||||++.|++||+.|.+          ++.....   ..+..+.      +.......... ..
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
T 1blx_A          188 PEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVT  267 (326)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCC
T ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccc
Confidence            355555667899999999999999999999954          1110000   0010000      00000000000 00


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          730 EAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       730 ~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..-..+.++...|.+.+|++||++.|+++
T Consensus       268 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          268 DIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             SCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            00112346778999999999999999974

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=97.60  E-value=4.3e-06  Score=84.25  Aligned_cols=73  Identities=15%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++||||||+++.|++||+.|.+-....   .....+.......+. ...   ..+.++...|.+.+|++||++.||++
T Consensus       189 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~-~~~---~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          189 GPEVDIWSCGVILYALLCGTLPFDDEHVP---TLFKKIRGGVFYIPE-YLN---RSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHCCCCCCT-TSC---HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhCCCCCCCCcHH---HHHHHhhcCcccCch-hcC---HHHHHHHHHHccCChhhCCCHHHHHh
Confidence            67899999999999999999995411000   000000000000000 001   12446678899999999999999976

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=97.60  E-value=6.3e-06  Score=84.36  Aligned_cols=75  Identities=12%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      ....+.++||||+|+++.|++||+.|..      +...+... . .. .+.....   ...   ..+.++...|.+.+|+
T Consensus       181 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~-~-~~-~~~~~~~---~~~---~~~~~li~~~l~~dp~  251 (304)
T 2jam_A          181 QKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEG-Y-YE-FESPFWD---DIS---ESAKDFICHLLEKDPN  251 (304)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHC-C-CC-CCTTTTT---TSC---HHHHHHHHHHHCSSTT
T ss_pred             cCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcC-C-CC-CCccccc---cCC---HHHHHHHHHHcCCChh
Confidence            4456789999999999999999999953      11111000 0 00 0000000   011   1244667789999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +||++.|+++
T Consensus       252 ~Rps~~~~l~  261 (304)
T 2jam_A          252 ERYTCEKALS  261 (304)
T ss_dssp             TSCCHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999976

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=97.60  E-value=1e-05  Score=83.88  Aligned_cols=82  Identities=18%  Similarity=0.253  Sum_probs=48.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-------hhhhc---cC-----------cccccccccCCCCCCCchhH---HHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSL---SG-----------ELFLKDVLDQRLPPPTGQLA---EAV  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~---~~-----------~~~~~~~~d~~l~~~~~~~~---~~~  732 (785)
                      ..+.++||||+||++.|++||+.|..       +...+   ..           .........+.+........   ..-
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
T 4aaa_A          201 KYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLS  280 (331)
T ss_dssp             TCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSC
T ss_pred             CcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchh
Confidence            56889999999999999999999853       00000   00           00011111111111100000   011


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|.+.+|++||++.||++
T Consensus       281 ~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          281 EVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             HHHHHHHHHHhccCcccCCCHHHHhc
Confidence            23557788999999999999999865

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=97.59  E-value=1.2e-05  Score=84.67  Aligned_cols=88  Identities=14%  Similarity=0.062  Sum_probs=51.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccCc-ccccccccCCC--------CCCCc------hhHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGE-LFLKDVLDQRL--------PPPTG------QLAEA  731 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~-~~~~~~~d~~l--------~~~~~------~~~~~  731 (785)
                      ..+.++|||||||+++|++||+.|..          +++..... .....-+++..        .....      .....
T Consensus       208 ~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (360)
T 3e3p_A          208 HYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKD  287 (360)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTT
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccc
Confidence            47899999999999999999999953          11111000 00000001100        00000      00001


Q ss_pred             HHHHHHHHhhcCCCCCCCCCChHHHHH--HHHhcc
Q 003931          732 VVLTINVALACTSTTPDTRPSMRFVAQ--ELSAKT  764 (785)
Q Consensus       732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~  764 (785)
                      -..+.++...|.+.+|++||++.||++  ++.++.
T Consensus       288 ~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  322 (360)
T 3e3p_A          288 AKEAYDLLSALLQYLPEERMKPYEALCHPYFDELH  322 (360)
T ss_dssp             HHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGG
T ss_pred             cHHHHHHHHHHhccCccccCCHHHHhcCccccccC
Confidence            234567788999999999999999976  345443

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=97.59  E-value=1e-05  Score=82.05  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=44.8

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCch-hhh--ccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGEL-ITS--LSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~-~~~--~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ..+.++|||||||++.|++||+.|..- ..+  +. ....     +.+...   ...   .+.++...|.+.+|++||++
T Consensus       207 ~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~---~~~---~~~~li~~~l~~dp~~Rps~  274 (289)
T 1x8b_A          207 THLPKADIFALALTVVCAAGAEPLPRNGDQWHEIR-QGRL-----PRIPQV---LSQ---EFTELLKVMIHPDPERRPSA  274 (289)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHH-TTCC-----CCCSSC---CCH---HHHHHHHHHTCSSGGGSCCH
T ss_pred             CCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHH-cCCC-----CCCCcc---cCH---HHHHHHHHHhCCCcccCCCH
Confidence            456799999999999999999876321 000  00 0000     111111   111   24466778999999999999


Q ss_pred             HHHHH
Q 003931          754 RFVAQ  758 (785)
Q Consensus       754 ~~vv~  758 (785)
                      .||++
T Consensus       275 ~~ll~  279 (289)
T 1x8b_A          275 MALVK  279 (289)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            99864

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=97.57  E-value=1.6e-05  Score=81.75  Aligned_cols=75  Identities=20%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+...... +.++||||||+++.|++||+.|.+-..         ++.+....... ....   .+.++...|.+.+|++
T Consensus       208 E~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---------~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~  274 (312)
T 2iwi_A          208 EWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ---------EILEAELHFPA-HVSP---DCCALIRRCLAPKPSS  274 (312)
T ss_dssp             HHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH---------HHHHTCCCCCT-TSCH---HHHHHHHHHTCSSTTT
T ss_pred             eeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH---------HHhhhccCCcc-cCCH---HHHHHHHHHccCChhh
Confidence            43333333 458999999999999999999954111         11111111110 1111   2345677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       275 Rps~~e~l~  283 (312)
T 2iwi_A          275 RPSLEEILL  283 (312)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999976

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=97.57  E-value=8.8e-06  Score=82.49  Aligned_cols=79  Identities=19%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++||||||+++.|++||+.|..-....   .....+...............-..+.++...|.+.+|++||++.|+
T Consensus       198 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el  274 (287)
T 2wei_A          198 TYDEKCDVWSAGVILYILLSGTPPFYGKNEY---DILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC  274 (287)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH---HHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHH
Confidence            4678999999999999999999995310000   0000000000000000000001124567788999999999999999


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       275 l~  276 (287)
T 2wei_A          275 LE  276 (287)
T ss_dssp             HH
T ss_pred             hc
Confidence            86

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=97.57  E-value=7.6e-06  Score=85.08  Aligned_cols=80  Identities=16%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc--CCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD--QRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.++|||||||++.|++||+.|.+-....   .....+..  ..+....   ..   .+.++...|.+.+|
T Consensus       210 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~---~~---~~~~li~~~l~~dp  280 (335)
T 2owb_A          210 PEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---ETYLRIKKNEYSIPKHI---NP---VAASLIQKMLQTDP  280 (335)
T ss_dssp             HHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHHTCCCCCTTS---CH---HHHHHHHHHTCSSG
T ss_pred             HHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH---HHHHHHhcCCCCCCccC---CH---HHHHHHHHHccCCh
Confidence            35555566788999999999999999999995411000   00000000  1111111   11   23456678999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.|+++
T Consensus       281 ~~Rps~~ell~  291 (335)
T 2owb_A          281 TARPTINELLN  291 (335)
T ss_dssp             GGSCCGGGGGG
T ss_pred             hHCcCHHHHhc
Confidence            99999999976

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=97.57  E-value=9.5e-06  Score=85.04  Aligned_cols=86  Identities=13%  Similarity=0.092  Sum_probs=49.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......+...............-..+.++.-.|...+|++
T Consensus       187 PE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  263 (361)
T 2yab_A          187 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRK  263 (361)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTT
T ss_pred             chHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhH
Confidence            3444455678899999999999999999999520000   0000111111110000000000012345677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       264 R~t~~e~l~  272 (361)
T 2yab_A          264 RLTIQEALR  272 (361)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhc
Confidence            999999864

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=97.56  E-value=1.4e-05  Score=82.60  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=46.1

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR  754 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~  754 (785)
                      ....+.++|||||||+++|++||+.|..-...............+.....  ....   .+.++...|.+.+|++||++.
T Consensus       208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~l~~li~~~l~~dp~~Rps~~  282 (326)
T 2x7f_A          208 DATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSK--KWSK---KFQSFIESCLVKNHSQRPATE  282 (326)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCS--CSCH---HHHHHHHHHCCSSGGGSCCHH
T ss_pred             CcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCcc--ccCH---HHHHHHHHHhccChhhCCCHH
Confidence            45678899999999999999999999531100000000000001111110  1111   234566789999999999999


Q ss_pred             HHHH
Q 003931          755 FVAQ  758 (785)
Q Consensus       755 ~vv~  758 (785)
                      +|++
T Consensus       283 ~ll~  286 (326)
T 2x7f_A          283 QLMK  286 (326)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9976

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=97.56  E-value=8.5e-06  Score=84.24  Aligned_cols=91  Identities=11%  Similarity=0.031  Sum_probs=52.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC--ccccccccc---------CCCCCCCchh--HHHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG--ELFLKDVLD---------QRLPPPTGQL--AEAV  732 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~--~~~~~~~~d---------~~l~~~~~~~--~~~~  732 (785)
                      ...+.++|||||||++.|++||+.|..          +......  .....+..+         +.........  ...-
T Consensus       176 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (324)
T 3mtl_A          176 TDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLD  255 (324)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSC
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCC
Confidence            456889999999999999999999853          1111000  000111100         0000000000  0001


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH--HHHhcccc
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ--ELSAKTQA  766 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~~~  766 (785)
                      ..+.++...|.+.+|++||++.||++  ++.++...
T Consensus       256 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  291 (324)
T 3mtl_A          256 SDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGER  291 (324)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCST
T ss_pred             HHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccc
Confidence            22456778899999999999999977  45555443

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=97.55  E-value=5.2e-06  Score=85.87  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-.+... +.++||||+||++.||+||+.|.+-...   ......+.......+.... .   .+.++.-.|...+|++
T Consensus       183 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~p~~~s-~---~~~~li~~~L~~dP~~  255 (328)
T 3fe3_A          183 ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL---KELRERVLRGKYRIPFYMS-T---DCENLLKRFLVLNPIK  255 (328)
T ss_dssp             HHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTTSC-H---HHHHHHHHHCCSSTTT
T ss_pred             ccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCCCCC-H---HHHHHHHHHCCCChhH
Confidence            44444443 4789999999999999999999541100   0000011111111010011 1   2335667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       256 R~t~~eil~  264 (328)
T 3fe3_A          256 RGTLEQIMK  264 (328)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999999865

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=97.55  E-value=4.8e-05  Score=77.45  Aligned_cols=81  Identities=12%  Similarity=0.063  Sum_probs=46.8

Q ss_pred             cccccceeeeehhhhhhhhCCCCCc-------hhhhccCccccc----------ccccCCCCCCC-chhHH----HHHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLK----------DVLDQRLPPPT-GQLAE----AVVLT  735 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~----------~~~d~~l~~~~-~~~~~----~~~~~  735 (785)
                      .+.++|||||||++.|++||+.|..       +...+...+...          ...++...... .....    .-..+
T Consensus       181 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (299)
T 2r3i_A          181 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDG  260 (299)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHH
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchhhHhhCCCCCHHH
Confidence            6889999999999999999999953       111100000000          00111111000 00000    00234


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHH
Q 003931          736 INVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .++...|.+.+|++||++.|+++
T Consensus       261 ~~li~~~L~~dP~~Rpt~~~~l~  283 (299)
T 2r3i_A          261 RSLLSQMLHYDPNKRISAKAALA  283 (299)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHhcCcCcccCCCHHHHhc
Confidence            46778899999999999999976

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=97.54  E-value=2e-05  Score=79.83  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---ccc--c--cccccCCCCCCC----ch-hHHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELF--L--KDVLDQRLPPPT----GQ-LAEAVVL  734 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~--~--~~~~d~~l~~~~----~~-~~~~~~~  734 (785)
                      ..+.++||||+||++.|++||+.|..          +.+....   ..+  .  ....++......    .. ....-..
T Consensus       177 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (288)
T 1ob3_A          177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDES  256 (288)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHH
Confidence            46889999999999999999999853          1110000   000  0  011122111000    00 0000112


Q ss_pred             HHHHHhhcCCCCCCCCCChHHHHH
Q 003931          735 TINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       735 ~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++...|.+.+|++||++.|+++
T Consensus       257 ~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          257 GIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHcCCCcccCCCHHHHhc
Confidence            346778899999999999999864

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=97.53  E-value=2.3e-05  Score=79.85  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      .+.++|||||||++.|++||+.|..-.....   ....+.......+ .....+   .+.++...|.+.+|++||++.||
T Consensus       217 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~R~s~~e~  290 (298)
T 2zv2_A          217 SGKALDVWAMGVTLYCFVFGQCPFMDERIMC---LHSKIKSQALEFPDQPDIAE---DLKDLITRMLDKNPESRIVVPEI  290 (298)
T ss_dssp             ESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHCCCCCCSSSCCCH---HHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             CCchhhhHhHHHHHHHHHHCCCCCCCccHHH---HHHHHhcccCCCCCccccCH---HHHHHHHHHhhcChhhCCCHHHH
Confidence            3678999999999999999999953100000   0000000000000 001111   24466788999999999999998


Q ss_pred             HH
Q 003931          757 AQ  758 (785)
Q Consensus       757 v~  758 (785)
                      ++
T Consensus       291 l~  292 (298)
T 2zv2_A          291 KL  292 (298)
T ss_dssp             TT
T ss_pred             hc
Confidence            53

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=97.53  E-value=8.2e-06  Score=83.21  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=47.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++||||||+++.|++||+.|..-....   .....+...............-..+.++...|.+.+|++||++.|
T Consensus       204 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~  280 (298)
T 1phk_A          204 PGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM---LMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE  280 (298)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             ccCCcccccHhHHHHHHHHHHCCCCCcCccHH---HHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHH
Confidence            34678999999999999999999995310000   000001110000000000001123456778899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      +++
T Consensus       281 ll~  283 (298)
T 1phk_A          281 ALA  283 (298)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=97.51  E-value=3.2e-05  Score=81.19  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.|++||+.|..
T Consensus       199 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  231 (360)
T 3eqc_A          199 PERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP  231 (360)
T ss_dssp             HHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            355555667889999999999999999999953

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=97.51  E-value=3.1e-05  Score=80.12  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             hhhhhc-ccccccceeeeehhhhhhhhCCCCCc
Q 003931          671 ELAVTM-RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       671 e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      |+-... ..+.++|||||||++.|++||+.|..
T Consensus       207 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~  239 (329)
T 3gbz_A          207 EILLGSRHYSTSVDIWSIACIWAEMLMKTPLFP  239 (329)
T ss_dssp             HHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence            444333 36899999999999999999999953

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=97.51  E-value=3.5e-05  Score=82.85  Aligned_cols=77  Identities=23%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             cccccccceeeeehhhhhhhh-CCCCCch--hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMM-GRHPGEL--ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLEllt-gk~p~~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ...+.++|||||||++.|++| |+.|.+-  .....   ................   .-..+.++...|.+.+|++||+
T Consensus       204 ~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~li~~~L~~dP~~Rps  277 (432)
T 3p23_A          204 ENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN---ILLGACSLDCLHPEKH---EDVIARELIEKMIAMDPQKRPS  277 (432)
T ss_dssp             -CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHH---HHTTCCCCTTSCTTCH---HHHHHHHHHHHHSCSSGGGSCC
T ss_pred             cCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHH---HHhccCCccccCcccc---ccHHHHHHHHHHHhCCHhhCCC
Confidence            455779999999999999999 8888531  00000   0000000000001111   1122446778999999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      +.||++
T Consensus       278 ~~evl~  283 (432)
T 3p23_A          278 AKHVLK  283 (432)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999984

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=97.50  E-value=1e-05  Score=82.06  Aligned_cols=81  Identities=19%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.....+.|+|||||||++.||+++-... . ..+   .....+.+....   ....+.......+...|.+.+|++
T Consensus       199 PE~~~~~~y~~~~DiwSlGvilyell~Pf~~~-~-~~~---~~~~~~~~~~~p---~~~~~~~~~~~~li~~~L~~dP~~  270 (299)
T 4g31_A          199 PEQIHGNSYSHKVDIFSLGLILFELLYPFSTQ-M-ERV---RTLTDVRNLKFP---PLFTQKYPCEYVMVQDMLSPSPME  270 (299)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSH-H-HHH---HHHHHHHTTCCC---HHHHHHCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHccCCCCc-c-HHH---HHHHHHhcCCCC---CCCcccCHHHHHHHHHHcCCChhH
Confidence            45555667789999999999999999832111 0 000   001111111111   111111122345667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       271 Rps~~eil~  279 (299)
T 4g31_A          271 RPEAINIIE  279 (299)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhc
Confidence            999999865

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=97.49  E-value=1.8e-05  Score=84.10  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.++|||||||++.||+||+.|..
T Consensus       212 ~~~~~~~DiwslG~il~el~~g~~pf~  238 (389)
T 3gni_B          212 QGYDAKSDIYSVGITACELANGHVPFK  238 (389)
T ss_dssp             SCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             CCCCcHhHHHHHHHHHHHHHHCCCCCC
Confidence            457889999999999999999999953

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=97.48  E-value=1.6e-05  Score=82.42  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=23.8

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++|||||||++.|++||+.|.
T Consensus       206 ~~~~~~~DiwslG~il~~ll~g~~p~  231 (330)
T 3nsz_A          206 QMYDYSLDMWSLGCMLASMIFRKEPF  231 (330)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             CcCCchhhHHHHHHHHHHHHhCCCCc
Confidence            45788999999999999999999995

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=97.48  E-value=5e-05  Score=80.09  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+......+.++|||||||++.|++||+.|..
T Consensus       195 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  227 (371)
T 2xrw_A          195 PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP  227 (371)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            455555667899999999999999999999853

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=97.47  E-value=4.3e-06  Score=84.57  Aligned_cols=80  Identities=11%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.....+.++||||+||++.||+||+.|.+--..   ......+......-+. ....+   +.++.-.|...+|++
T Consensus       203 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~dli~~lL~~dp~~  275 (311)
T 4aw0_A          203 PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---GLIFAKIIKLEYDFPE-KFFPK---ARDLVEKLLVLDATK  275 (311)
T ss_dssp             HHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCT-TCCHH---HHHHHHHHSCSSGGG
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCc-ccCHH---HHHHHHHHccCCHhH
Confidence            3555556678899999999999999999999530000   0000111111111011 11112   234567899999999


Q ss_pred             CCChHHH
Q 003931          750 RPSMRFV  756 (785)
Q Consensus       750 Rp~m~~v  756 (785)
                      ||+..|+
T Consensus       276 R~t~~e~  282 (311)
T 4aw0_A          276 RLGCEEM  282 (311)
T ss_dssp             STTSGGG
T ss_pred             CcChHHH
Confidence            9999886

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=97.44  E-value=3.7e-05  Score=79.14  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++|||||||++.||+||+.|..
T Consensus       185 ~~~~~~DiwslG~il~el~~g~~pf~  210 (317)
T 2pmi_A          185 TYSTSIDIWSCGCILAEMITGKPLFP  210 (317)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            46889999999999999999999853

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=97.44  E-value=5.4e-05  Score=79.16  Aligned_cols=82  Identities=7%  Similarity=0.064  Sum_probs=47.9

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc----------hhhhccC--cccccc-----cccC-CCC-CCCchhHHHH-----
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG--ELFLKD-----VLDQ-RLP-PPTGQLAEAV-----  732 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~--~~~~~~-----~~d~-~l~-~~~~~~~~~~-----  732 (785)
                      ..+.++|||||||++.|++||+.|.+          +......  ......     ..+. ... .......+.+     
T Consensus       205 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
T 3mi9_A          205 DYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVR  284 (351)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHC
T ss_pred             CCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccC
Confidence            46889999999999999999999854          0000000  000000     0000 000 0000111111     


Q ss_pred             -HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 -VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 -~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                       ..+.++...|.+.+|++||++.||++
T Consensus       285 ~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          285 DPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence             12557788999999999999999865

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=97.43  E-value=1.6e-05  Score=83.54  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=47.9

Q ss_pred             hhhhhcccccc-cceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCC
Q 003931          671 ELAVTMRVTDK-CDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       671 e~~~~~~~t~k-~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      |+-.....+.+ +||||+||++.|++||+.|..-...... ......+.......+. .....   .+.++.-.|.+.+|
T Consensus       187 E~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~li~~~L~~dP  263 (361)
T 3uc3_A          187 EVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISP---ECCHLISRIFVADP  263 (361)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCH---HHHHHHHHHSCSCT
T ss_pred             hhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCH---HHHHHHHHHccCCh
Confidence            44333444444 8999999999999999999531100000 0001111111111100 00011   23466788999999


Q ss_pred             CCCCChHHHHH
Q 003931          748 DTRPSMRFVAQ  758 (785)
Q Consensus       748 ~~Rp~m~~vv~  758 (785)
                      ++||++.|+++
T Consensus       264 ~~Rps~~ell~  274 (361)
T 3uc3_A          264 ATRISIPEIKT  274 (361)
T ss_dssp             TTSCCHHHHHT
T ss_pred             hHCcCHHHHHh
Confidence            99999999976

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=97.43  E-value=1.7e-05  Score=83.62  Aligned_cols=32  Identities=22%  Similarity=0.468  Sum_probs=26.4

Q ss_pred             hhhhh-cccccccceeeeehhhhhhhhCCCCCc
Q 003931          671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      |+... ...+.++|||||||++.|++||+.|.+
T Consensus       211 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  243 (371)
T 4exu_A          211 EVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFK  243 (371)
T ss_dssp             HHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             HHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence            44333 567889999999999999999999964

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=97.42  E-value=1.5e-05  Score=83.39  Aligned_cols=82  Identities=12%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             cccc-ccceeeeehhhhhhhhCCCCCc-------hhhhccCcc-cc----cccccCCCCCCCc-hhHHHHHHHHHHHhhc
Q 003931          677 RVTD-KCDVFSFGVVALEVMMGRHPGE-------LITSLSGEL-FL----KDVLDQRLPPPTG-QLAEAVVLTINVALAC  742 (785)
Q Consensus       677 ~~t~-k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~-~~----~~~~d~~l~~~~~-~~~~~~~~~~~ial~C  742 (785)
                      ..+. ++||||||+++.|++||+.|.+       +...+.... ..    .....+....... .....-..+.++...|
T Consensus       227 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  306 (348)
T 2pml_X          227 SYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLF  306 (348)
T ss_dssp             CEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHH
Confidence            3444 9999999999999999999954       111111100 00    0000000000000 0000012345677789


Q ss_pred             CCCCCCCCCChHHHHH
Q 003931          743 TSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~  758 (785)
                      .+.+|++||++.||++
T Consensus       307 L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          307 LRKNPAERITSEDALK  322 (348)
T ss_dssp             CCSSGGGSCCHHHHHT
T ss_pred             ccCChhhCCCHHHHhc
Confidence            9999999999999865

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=97.35  E-value=8e-05  Score=80.91  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=28.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.++||||+||++.||+||+.|..
T Consensus       232 PE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~  264 (464)
T 3ttj_A          232 PEVILGMGYKENVDIWSVGCIMGEMVRHKILFP  264 (464)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence            455556678899999999999999999999853

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=97.35  E-value=3e-05  Score=79.84  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchh----------hhccC--cccccccc-------cCCCCCCCchhH----HHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELI----------TSLSG--ELFLKDVL-------DQRLPPPTGQLA----EAV  732 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~----------~~~~~--~~~~~~~~-------d~~l~~~~~~~~----~~~  732 (785)
                      ...+.++|||||||++.|++||+.|..-.          .....  .....++.       ............    ..-
T Consensus       200 ~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (320)
T 2i6l_A          200 NNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGIS  279 (320)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCC
T ss_pred             ccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhh
Confidence            45788999999999999999999995410          00000  00000000       000000000000    001


Q ss_pred             HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          733 VLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       733 ~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      ..+.++...|.+.+|++||++.|+++
T Consensus       280 ~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          280 REAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             HHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHcCCCccccCCHHHHhC
Confidence            23456788999999999999999976

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=97.35  E-value=5.9e-05  Score=79.22  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----------hhhhccCcc----------cccccccCCCCCCC-chhH----H
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGEL----------FLKDVLDQRLPPPT-GQLA----E  730 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~~----------~~~~~~d~~l~~~~-~~~~----~  730 (785)
                      ...+.++|||||||++.|++||+.|..          ++.......          ...+.+...+.... ....    .
T Consensus       209 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (362)
T 3pg1_A          209 KGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPT  288 (362)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTT
T ss_pred             CCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCC
Confidence            457889999999999999999999954          111110000          00001111110000 0000    0


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          731 AVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       731 ~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .-..+.++...|.+.+|++||++.|+++
T Consensus       289 ~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          289 ADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            0123457788999999999999999976

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=97.34  E-value=3.7e-05  Score=86.06  Aligned_cols=85  Identities=20%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCc----hhhhccC---ccc----ccccccC------CCCCCCchhHHHHH
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----LITSLSG---ELF----LKDVLDQ------RLPPPTGQLAEAVV  733 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----~~~~~~~---~~~----~~~~~d~------~l~~~~~~~~~~~~  733 (785)
                      |+......+.++|||||||++.|++||+.|..    ...|...   ...    ..+..+.      .+..+.......-.
T Consensus       193 E~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~  272 (676)
T 3qa8_A          193 ELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG  272 (676)
T ss_dssp             CSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHH
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhH
Confidence            33334567889999999999999999999963    2223211   110    0111111      11111000011122


Q ss_pred             HHHHHHhhcCCCCCCCCCChHH
Q 003931          734 LTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       734 ~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      .+.++...|.+.+|++||++.|
T Consensus       273 ~L~dLI~~mL~~DP~kRPTa~e  294 (676)
T 3qa8_A          273 KLERWLQCMLMWHQRQRGTDPQ  294 (676)
T ss_dssp             HHHHHHHHHSCSSCC---CCTT
T ss_pred             HHHHHHHHHccCCHhhCcCHHH
Confidence            3456778899999999999977

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=97.34  E-value=2.1e-05  Score=85.40  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA  757 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv  757 (785)
                      .+.++||||+||++.|++||+.|.+-...   ......+.+.....+. ....   .+.++.-.|.+.+|++||++.||+
T Consensus       193 ~~~~~DiwSlGvil~elltG~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~---~~~~Li~~~L~~dP~~Rpt~~eil  265 (476)
T 2y94_A          193 AGPEVDIWSSGVILYALLCGTLPFDDDHV---PTLFKKICDGIFYTPQ-YLNP---SVISLLKHMLQVDPMKRATIKDIR  265 (476)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSSCSSCCSSS---HHHHHHHHTTCCCCCT-TCCH---HHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             CCCcceehhhHHHHHHHhhCCCCCCCCCH---HHHHHHHhcCCcCCCc-cCCH---HHHHHHHHHcCCCchhCcCHHHHH
Confidence            36789999999999999999999641000   0001111111111111 0111   234567789999999999999998


Q ss_pred             H--HHHh
Q 003931          758 Q--ELSA  762 (785)
Q Consensus       758 ~--~l~~  762 (785)
                      +  ++.+
T Consensus       266 ~hp~~~~  272 (476)
T 2y94_A          266 EHEWFKQ  272 (476)
T ss_dssp             TCHHHHT
T ss_pred             hCHHhhh
Confidence            6  4544

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=97.32  E-value=1.3e-05  Score=83.92  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=45.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC----
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP----  751 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp----  751 (785)
                      ..+.++|||||||+++|++||+.|......... ......+.......+. ...   ..+.++...|.+.+|++||    
T Consensus       238 ~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~li~~~L~~dP~~R~~~~~  313 (355)
T 1vzo_A          238 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQ-EMS---ALAKDLIQRLLMKDPKKRLGCGP  313 (355)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCT-TSC---HHHHHHHHHHTCSSGGGSTTSST
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCc-ccC---HHHHHHHHHHhhhCHHHhcCCCC
Confidence            467899999999999999999999531100000 0000011111110000 111   1234667889999999999    


Q ss_pred             -ChHHHHH
Q 003931          752 -SMRFVAQ  758 (785)
Q Consensus       752 -~m~~vv~  758 (785)
                       ++.|+.+
T Consensus       314 ~s~~ell~  321 (355)
T 1vzo_A          314 RDADEIKE  321 (355)
T ss_dssp             TTHHHHHT
T ss_pred             CCHHHHHc
Confidence             8888865

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=97.32  E-value=4.7e-05  Score=79.67  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=24.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.++|||||||++.|++||+.|.+
T Consensus       199 ~~~~~~~Di~slG~il~el~~g~~pf~  225 (353)
T 3coi_A          199 MHYNQTVDIWSVGCIMAEMLTGKTLFK  225 (353)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCSSB
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            457889999999999999999999954

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=97.31  E-value=5.4e-05  Score=81.23  Aligned_cols=89  Identities=17%  Similarity=0.105  Sum_probs=51.5

Q ss_pred             hhhhhh-cccccccceeeeehhhhhhhhCCCCCc-------hhhhccC---c---------ccccccccCCCCCCCchh-
Q 003931          670 TELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSG---E---------LFLKDVLDQRLPPPTGQL-  728 (785)
Q Consensus       670 ~e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~---~---------~~~~~~~d~~l~~~~~~~-  728 (785)
                      +|+... ...+.++|||||||++.||+||+.|..       +.+.+..   .         ....+.--+.+....... 
T Consensus       225 PE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~  304 (420)
T 1j1b_A          225 PELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKV  304 (420)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHH
T ss_pred             HHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHh
Confidence            354433 357889999999999999999999853       1111110   0         000111111111100000 


Q ss_pred             --HHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          729 --AEAVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       729 --~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                        ...-..+.++.-.|.+.+|++||++.|+++
T Consensus       305 ~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          305 FRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence              000123557778899999999999999975

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=97.30  E-value=0.0001  Score=77.39  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.++||||+||++.|++||+.|..
T Consensus       208 ~~~~~~DiwslG~il~ell~g~~pf~  233 (364)
T 3qyz_A          208 GYTKSIDIWSVGCILAEMLSNRPIFP  233 (364)
T ss_dssp             SCSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCcchhHHHHHHHHHHHHHCCCCCC
Confidence            36889999999999999999999853

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=97.30  E-value=3.4e-05  Score=84.81  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      ...+.++||||+||++.|++||+.|..      +...+.....  ....+...    ...   ..+.++...|.+.+|++
T Consensus       212 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~--~~~~~~~~----~~s---~~~~~li~~~L~~dp~~  282 (494)
T 3lij_A          212 KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKY--TFDSPEWK----NVS---EGAKDLIKQMLQFDSQR  282 (494)
T ss_dssp             TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC--CCCSGGGT----TSC---HHHHHHHHHHTCSSTTT
T ss_pred             ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC--CCCchhcc----cCC---HHHHHHHHHHCCCChhh
Confidence            457889999999999999999999953      1111111000  00000000    001   12345677899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.||++
T Consensus       283 R~s~~e~l~  291 (494)
T 3lij_A          283 RISAQQALE  291 (494)
T ss_dssp             SCCHHHHHT
T ss_pred             CccHHHHhc
Confidence            999999975

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=97.29  E-value=2.2e-05  Score=85.12  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......+......-+. ....   .+.++.-.|.+.+|++
T Consensus       318 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~li~~~L~~dP~~  390 (446)
T 4ejn_A          318 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKLFELILMEEIRFPR-TLGP---EAKSLLSGLLKKDPKQ  390 (446)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHTCSSTTT
T ss_pred             HhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH---HHHHHHHHhCCCCCCc-cCCH---HHHHHHHHHcccCHHH
Confidence            4555566788999999999999999999999531000   0000011111111010 0111   2345667899999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      ||     ++.|+++
T Consensus       391 R~~~~~~t~~ell~  404 (446)
T 4ejn_A          391 RLGGGSEDAKEIMQ  404 (446)
T ss_dssp             STTCSTTTHHHHHT
T ss_pred             hCCCCCCCHHHHHh
Confidence            99     8988865

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=97.28  E-value=4e-05  Score=84.14  Aligned_cols=84  Identities=18%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV  756 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v  756 (785)
                      ..+.++||||+||++.|++||+.|..-...   ......+...............-..+.++...|.+.+|++||++.|+
T Consensus       198 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~  274 (486)
T 3mwu_A          198 TYDEKCDVWSAGVILYILLSGTPPFYGKNE---YDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC  274 (486)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence            467899999999999999999999530000   00000000000000000000001123466778999999999999999


Q ss_pred             HH--HHHhc
Q 003931          757 AQ--ELSAK  763 (785)
Q Consensus       757 v~--~l~~~  763 (785)
                      ++  ++.+.
T Consensus       275 l~hp~~~~~  283 (486)
T 3mwu_A          275 LEHPWIQKY  283 (486)
T ss_dssp             HHCHHHHHT
T ss_pred             hcCHhhccC
Confidence            86  35443

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=97.28  E-value=2.8e-05  Score=79.29  Aligned_cols=74  Identities=15%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc----hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE----LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP  751 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~----~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp  751 (785)
                      ...+.++|||||||+++|++|+..+..    +...+...   ...+.+....      .....+.++...|.+.+|++||
T Consensus       206 ~~~~~~~Di~slG~il~~l~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~li~~~l~~dp~~Rp  276 (303)
T 1zy4_A          206 GHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSV---SIEFPPDFDD------NKMKVEKKIIRLLIDHDPNKRP  276 (303)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHST---TCCCCTTCCT------TTSHHHHHHHHHHTCSSGGGSC
T ss_pred             CCCcchhhHHHHHHHHHHHHhccCCchhHHHHHHhcccc---ccccCccccc------cchHHHHHHHHHHHhcCcccCc
Confidence            357889999999999999999554321    11111110   0001111111      1112244677889999999999


Q ss_pred             ChHHHHH
Q 003931          752 SMRFVAQ  758 (785)
Q Consensus       752 ~m~~vv~  758 (785)
                      ++.||++
T Consensus       277 s~~~ll~  283 (303)
T 1zy4_A          277 GARTLLN  283 (303)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhC
Confidence            9999964

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=97.28  E-value=3.1e-05  Score=85.02  Aligned_cols=78  Identities=21%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      ..+.++||||+||++.|++||+.|..      +...+....     ....... .....+   .+.++.-.|.+.+|++|
T Consensus       203 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~-----~~~~~~~-~~~~s~---~~~~li~~~L~~dp~~R  273 (484)
T 3nyv_A          203 TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGK-----YTFELPQ-WKKVSE---SAKDLIRKMLTYVPSMR  273 (484)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-----CCCCSGG-GGGSCH---HHHHHHHHHTCSSGGGS
T ss_pred             CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC-----CCCCCcc-cccCCH---HHHHHHHHHCCCChhHC
Confidence            57889999999999999999999953      111111100     0000000 001111   23456778999999999


Q ss_pred             CChHHHHH--HHHhc
Q 003931          751 PSMRFVAQ--ELSAK  763 (785)
Q Consensus       751 p~m~~vv~--~l~~~  763 (785)
                      |++.|+++  ++...
T Consensus       274 ~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          274 ISARDALDHEWIQTY  288 (484)
T ss_dssp             CCHHHHHTSHHHHHH
T ss_pred             cCHHHHhhChhhccc
Confidence            99999976  45443

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=97.25  E-value=3.3e-05  Score=85.20  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=49.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.++||||+||++.|++||+.|..-...   ......+...............-..+.++.-.|.+.+|++||++.|
T Consensus       222 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e  298 (504)
T 3q5i_A          222 KKYNEKCDVWSCGVIMYILLCGYPPFGGQND---QDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEE  298 (504)
T ss_dssp             TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHH
Confidence            4578899999999999999999999531000   0000011111110000000000112446677899999999999999


Q ss_pred             HHH--HHHhc
Q 003931          756 VAQ--ELSAK  763 (785)
Q Consensus       756 vv~--~l~~~  763 (785)
                      |++  ++.+.
T Consensus       299 ~l~h~~~~~~  308 (504)
T 3q5i_A          299 ALNSRWIKKY  308 (504)
T ss_dssp             HHTSHHHHHT
T ss_pred             HhcCHhhhhc
Confidence            975  45443

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=97.24  E-value=8.9e-05  Score=78.77  Aligned_cols=82  Identities=20%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-------h---hhhccCc--cc----ccccccCCCCCCCc-hhHH-----HHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-------L---ITSLSGE--LF----LKDVLDQRLPPPTG-QLAE-----AVVL  734 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~---~~~~~~~--~~----~~~~~d~~l~~~~~-~~~~-----~~~~  734 (785)
                      ..+.++|||||||++.||+||+.|..       +   ++.....  ..    .....+........ ....     .-..
T Consensus       218 ~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (394)
T 4e7w_A          218 NYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPD  297 (394)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHH
Confidence            47889999999999999999999953       1   1111000  00    00011111100000 0000     0123


Q ss_pred             HHHHHhhcCCCCCCCCCChHHHHH
Q 003931          735 TINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       735 ~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      +.++...|.+.+|++||++.|+++
T Consensus       298 ~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          298 AIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHhCCChhhCCCHHHHhc
Confidence            556778999999999999999976

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=97.24  E-value=0.0001  Score=76.83  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=47.2

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-------hhhhcc---C---cccc-----cccccCC-CCCCCchh--HHHHHHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLS---G---ELFL-----KDVLDQR-LPPPTGQL--AEAVVLT  735 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~---~---~~~~-----~~~~d~~-l~~~~~~~--~~~~~~~  735 (785)
                      ..+.++|||||||++.|++||+.|..       +...+.   .   +.+.     .+.+... ........  ...-..+
T Consensus       189 ~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (346)
T 1ua2_A          189 MYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDL  268 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHH
T ss_pred             CCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHH
Confidence            36789999999999999999998843       110000   0   0000     0000000 00000000  0001235


Q ss_pred             HHHHhhcCCCCCCCCCChHHHHHH
Q 003931          736 INVALACTSTTPDTRPSMRFVAQE  759 (785)
Q Consensus       736 ~~ial~C~~~~p~~Rp~m~~vv~~  759 (785)
                      .++.-.|.+.+|++||++.||++.
T Consensus       269 ~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          269 LDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             HHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHhccChhhCCCHHHHhcC
Confidence            567788999999999999999763

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=97.24  E-value=6.8e-05  Score=79.46  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             hhhhhh-cccccccceeeeehhhhhhhhCCCCCc-------hhhhcc---Cc---------ccccccccCCCCCCCchhH
Q 003931          670 TELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLS---GE---------LFLKDVLDQRLPPPTGQLA  729 (785)
Q Consensus       670 ~e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~---~~---------~~~~~~~d~~l~~~~~~~~  729 (785)
                      +|+... ...+.++||||+||++.|++||+.|..       +...+.   ..         ....++.-+.....  ...
T Consensus       210 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~--~~~  287 (383)
T 3eb0_A          210 PELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAK--DWR  287 (383)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCC--CHH
T ss_pred             HHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcc--cHH
Confidence            344333 347889999999999999999999953       111110   00         00001111111100  000


Q ss_pred             H-----HHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931          730 E-----AVVLTINVALACTSTTPDTRPSMRFVAQ  758 (785)
Q Consensus       730 ~-----~~~~~~~ial~C~~~~p~~Rp~m~~vv~  758 (785)
                      .     .-..+.++...|.+.+|++||++.|+++
T Consensus       288 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          288 KILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             HHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0     0112457778999999999999999975

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=97.23  E-value=3.4e-05  Score=79.97  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=47.8

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++||||+||++.||+||+.|..-...   ......+....+.-+. ....+   +..+.-.|.+.+|++|
T Consensus       175 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~lL~~dP~~R  247 (337)
T 1o6l_A          175 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---ERLFELILMEEIRFPR-TLSPE---AKSLLAGLLKKDPKQR  247 (337)
T ss_dssp             GGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSSTTTS
T ss_pred             hhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCHH---HHHHHHHHhhcCHHHh
Confidence            444445678899999999999999999999530000   0000011111111110 11112   3345667999999999


Q ss_pred             C-----ChHHHHH
Q 003931          751 P-----SMRFVAQ  758 (785)
Q Consensus       751 p-----~m~~vv~  758 (785)
                      |     ++.||.+
T Consensus       248 ~g~~~~~~~ei~~  260 (337)
T 1o6l_A          248 LGGGPSDAKEVME  260 (337)
T ss_dssp             TTCSTTTHHHHHT
T ss_pred             cCCCCCCHHHHHc
Confidence            9     7888754

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=97.22  E-value=2.6e-05  Score=81.69  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.++|||||||++.|++||+.|..
T Consensus       198 ~~~~~~~Di~slG~il~~l~~g~~pf~  224 (353)
T 2b9h_A          198 AKYSRAMDVWSCGCILAELFLRRPIFP  224 (353)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCccchhhHHHHHHHHHHHHhCCCCCC
Confidence            567889999999999999999999953

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=97.21  E-value=0.0001  Score=77.35  Aligned_cols=31  Identities=26%  Similarity=0.494  Sum_probs=25.8

Q ss_pred             hhhhh-cccccccceeeeehhhhhhhhCCCCC
Q 003931          671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      |+-.. ...+.++||||+||++.||+||+.|.
T Consensus       199 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf  230 (367)
T 2fst_X          199 EIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF  230 (367)
T ss_dssp             HHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             HHHcCCcCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            44333 46788999999999999999999985

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=97.18  E-value=0.00018  Score=75.64  Aligned_cols=87  Identities=11%  Similarity=-0.012  Sum_probs=53.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..     ..... ...++......  ...+....+   .-.|.+.+|.+
T Consensus       254 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~-----~~~~~-~~~~~~~~~~~--~~~~~~~~~---~~~~l~~~p~~  322 (365)
T 3e7e_A          254 VEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKV-----KNEGG-ECKPEGLFRRL--PHLDMWNEF---FHVMLNIPDCH  322 (365)
T ss_dssp             HHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCE-----EEETT-EEEECSCCTTC--SSHHHHHHH---HHHHHCCCCTT
T ss_pred             hHHhcCCCCCccccHHHHHHHHHHHHhCCCccc-----cCCCC-ceeechhcccc--CcHHHHHHH---HHHHcCCCCCC
Confidence            466666678999999999999999999999942     11000 00111111111  112233333   33456677877


Q ss_pred             C-CChHHHHHHHHhccccc
Q 003931          750 R-PSMRFVAQELSAKTQAY  767 (785)
Q Consensus       750 R-p~m~~vv~~l~~~~~~~  767 (785)
                      | |+++++.+.|+++-...
T Consensus       323 r~~~~~~l~~~l~~~l~~~  341 (365)
T 3e7e_A          323 HLPSLDLLRQKLKKVFQQH  341 (365)
T ss_dssp             CCCCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHh
Confidence            7 68888888888775553

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.17  E-value=0.00011  Score=78.44  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=25.4

Q ss_pred             hhhhh-cccccccceeeeehhhhhhhhCCCCC
Q 003931          671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      |+-.. ...+.++|||||||++.||+||+.|.
T Consensus       205 E~~~~~~~~~~~~DiwSlG~il~ell~g~~pf  236 (405)
T 3rgf_A          205 ELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  236 (405)
T ss_dssp             HHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             hhhcCCCcccchhhhHHHHHHHHHHHhCCCCC
Confidence            44333 34788999999999999999999985

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=97.16  E-value=0.00016  Score=76.02  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=24.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.++||||+||++.||+||+.|..
T Consensus       201 ~~~~~~~DiwslG~il~ell~g~~pf~  227 (367)
T 1cm8_A          201 MRYTQTVDIWSVGCIMAEMITGKTLFK  227 (367)
T ss_dssp             TCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCChhhhHHHHHHHHHHHHhCCCCCC
Confidence            567899999999999999999999953

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=97.13  E-value=4.1e-05  Score=79.88  Aligned_cols=82  Identities=11%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......+....+.-+. ....   .+..+.-.|.+.+|++
T Consensus       207 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~li~~lL~~dp~~  279 (350)
T 1rdq_E          207 PEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP---IQIYEKIVSGKVRFPS-HFSS---DLKDLLRNLLQVDLTK  279 (350)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TCCH---HHHHHHHHHSCSCTTT
T ss_pred             HHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCH---HHHHHHHHHhhcCHHh
Confidence            3544555678999999999999999999999530000   0000111111111111 1111   2345667899999999


Q ss_pred             CCC-----hHHHHH
Q 003931          750 RPS-----MRFVAQ  758 (785)
Q Consensus       750 Rp~-----m~~vv~  758 (785)
                      ||+     +.||.+
T Consensus       280 R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          280 RFGNLKNGVNDIKN  293 (350)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             ccCCccCCHHHHHh
Confidence            998     777754

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=97.12  E-value=3.8e-05  Score=79.36  Aligned_cols=82  Identities=15%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.......+.++|||||||++.||+||+.|..-...   ......+.......+. ....   .+.++.-.|.+.+|++
T Consensus       190 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~li~~~L~~dp~~  262 (327)
T 3a62_A          190 PEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR---KKTIDKILKCKLNLPP-YLTQ---EARDLLKKLLKRNAAS  262 (327)
T ss_dssp             HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHTCCCCCT-TSCH---HHHHHHHHHSCSCGGG
T ss_pred             HhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCCH---HHHHHHHHHHhcCHhh
Confidence            3444455678899999999999999999999531000   0001111111111110 1111   2345667899999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      ||     ++.||.+
T Consensus       263 R~~~~~~~~~e~l~  276 (327)
T 3a62_A          263 RLGAGPGDAGEVQA  276 (327)
T ss_dssp             STTSSTTTHHHHHH
T ss_pred             ccCCCCCCHHHHHc
Confidence            99     5556643

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=97.12  E-value=2.4e-05  Score=82.26  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......++...+.-+. ....+   +..+.-.|.+.+|++
T Consensus       208 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~~~-~~~~~---~~~li~~lL~~dp~~  280 (373)
T 2r5t_A          208 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT---AEMYDNILNKPLQLKP-NITNS---ARHLLEGLLQKDRTK  280 (373)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH---HHHHHHHHHSCCCCCS-SSCHH---HHHHHHHHTCSSGGG
T ss_pred             HHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH---HHHHHHHHhcccCCCC-CCCHH---HHHHHHHHcccCHHh
Confidence            3444455678899999999999999999999530000   0001111111111111 11112   335567899999999


Q ss_pred             CCChHHHHHHH
Q 003931          750 RPSMRFVAQEL  760 (785)
Q Consensus       750 Rp~m~~vv~~l  760 (785)
                      ||++.+.+.++
T Consensus       281 R~~~~~~~~~i  291 (373)
T 2r5t_A          281 RLGAKDDFMEI  291 (373)
T ss_dssp             STTTTTTHHHH
T ss_pred             CCCCCCCHHHH
Confidence            99997655554

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=97.11  E-value=0.00015  Score=76.43  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             hhhhhhc-ccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTM-RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+..+. ..+.++||||+||++.||+||+.|.
T Consensus       231 PEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF  263 (398)
T 4b99_A          231 PELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF  263 (398)
T ss_dssp             HHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHHhcCCCCCCChhheehhHHHHHHHHHCCCCC
Confidence            4544443 4588999999999999999999995

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=97.10  E-value=8.7e-05  Score=78.22  Aligned_cols=77  Identities=22%  Similarity=0.282  Sum_probs=44.1

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC-hHH
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS-MRF  755 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~-m~~  755 (785)
                      ..+.++|||||||++.||+||+.|...............+.......+. ....   .+..+.-.|.+.+|++||+ +.+
T Consensus       193 ~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~-~~s~---~~~~li~~lL~~dP~~R~s~~~~  268 (384)
T 4fr4_A          193 GYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPS-AWSQ---EMVSLLKKLLEPNPDQRFSQLSD  268 (384)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHSCSSGGGSCCSHHH
T ss_pred             CCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCC-cCCH---HHHHHHHHHhcCCHhHhcccHHH
Confidence            3678999999999999999999996311110000000000011111010 1111   2345667899999999999 555


Q ss_pred             HH
Q 003931          756 VA  757 (785)
Q Consensus       756 vv  757 (785)
                      |.
T Consensus       269 l~  270 (384)
T 4fr4_A          269 VQ  270 (384)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.07  E-value=0.00024  Score=79.03  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=49.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++||||+||++.||+||+.|..      ....+.....   -+++....   ...++   ...+...|.
T Consensus       325 PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~---~~s~~---~~dli~~~L  395 (573)
T 3uto_A          325 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW---NMDDSAFS---GISED---GKDFIRKLL  395 (573)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCC---CCCSGGGT---TSCHH---HHHHHHTTS
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCC---CCCccccc---CCCHH---HHHHHHHHc
Confidence            355556667889999999999999999999953      1111111000   00000000   01112   234566899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      ..+|++||++.|+.+
T Consensus       396 ~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          396 LADPNTRMTIHQALE  410 (573)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             cCChhHCcCHHHHhc
Confidence            999999999999865

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=97.06  E-value=3.3e-05  Score=80.60  Aligned_cols=77  Identities=19%  Similarity=0.289  Sum_probs=46.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-...   ......+......-+... ..+   +..+.-.|.+.+|++
T Consensus       193 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~p~~~-~~~---~~~li~~lL~~dP~~  265 (353)
T 3txo_A          193 PEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE---DDLFEAILNDEVVYPTWL-HED---ATGILKSFMTKNPTM  265 (353)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTTS-CHH---HHHHHHHHTCSSGGG
T ss_pred             hhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCCCC-CHH---HHHHHHHHhhhCHHH
Confidence            3555556678899999999999999999999531000   000111111111111101 112   335567899999999


Q ss_pred             CCCh
Q 003931          750 RPSM  753 (785)
Q Consensus       750 Rp~m  753 (785)
                      ||++
T Consensus       266 R~~~  269 (353)
T 3txo_A          266 RLGS  269 (353)
T ss_dssp             STTS
T ss_pred             ccCC
Confidence            9998

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=97.06  E-value=6.1e-05  Score=79.69  Aligned_cols=80  Identities=19%  Similarity=0.290  Sum_probs=47.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC--c---c-cccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG--E---L-FLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~--~---~-~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++||||+||++.||+||+.|.+.......  .   . ....+....+.-+.... .   .+..+.-.|.
T Consensus       222 PE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s-~---~~~~li~~lL  297 (396)
T 4dc2_A          222 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLS-V---KAASVLKSFL  297 (396)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSC-H---HHHHHHHHHT
T ss_pred             chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCC-H---HHHHHHHHHh
Confidence            3555556678899999999999999999999642211100  0   0 01111222221111111 1   2345667899


Q ss_pred             CCCCCCCCCh
Q 003931          744 STTPDTRPSM  753 (785)
Q Consensus       744 ~~~p~~Rp~m  753 (785)
                      +.+|++||+.
T Consensus       298 ~~dP~~R~~~  307 (396)
T 4dc2_A          298 NKDPKERLGC  307 (396)
T ss_dssp             CSCTTTSTTC
T ss_pred             cCCHhHcCCC
Confidence            9999999995

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=97.06  E-value=0.00012  Score=77.60  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=23.6

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++||||+||++.||+||+.|.
T Consensus       206 ~~~~~~~DiwSlG~il~ell~g~~pf  231 (388)
T 3oz6_A          206 TKYTKGIDMWSLGCILGEILCGKPIF  231 (388)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCC
Confidence            45788999999999999999999885

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=96.99  E-value=7.2e-05  Score=76.84  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-...   ......++...+.-+. ....+   +..+.-.|...+|++
T Consensus       172 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~p~-~~~~~---~~~li~~lL~~dp~~  244 (318)
T 1fot_A          172 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT---MKTYEKILNAELRFPP-FFNED---VKDLLSRLITRDLSQ  244 (318)
T ss_dssp             HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSCTTT
T ss_pred             HhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCCHH---HHHHHHHHhccCHHH
Confidence            3555556678899999999999999999999520000   0001112221111111 11112   335566899999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      ||     ++.||.+
T Consensus       245 R~~~~~~~~~~i~~  258 (318)
T 1fot_A          245 RLGNLQNGTEDVKN  258 (318)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             cCCCcCCCHHHHhc
Confidence            99     7888763

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=96.98  E-value=6e-05  Score=78.43  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=46.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC------cccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG------ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~------~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++||||+||++.||+||+.|.+.......      ......+......-+.... .   .+..+.-.|.
T Consensus       179 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s-~---~~~~li~~lL  254 (345)
T 3a8x_A          179 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLS-V---KAASVLKSFL  254 (345)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSC-H---HHHHHHHHHT
T ss_pred             ccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCC-H---HHHHHHHHHh
Confidence            3444455678899999999999999999999642111000      0000111122211111111 1   2345667899


Q ss_pred             CCCCCCCCCh
Q 003931          744 STTPDTRPSM  753 (785)
Q Consensus       744 ~~~p~~Rp~m  753 (785)
                      +.+|++||+.
T Consensus       255 ~~dP~~R~~~  264 (345)
T 3a8x_A          255 NKDPKERLGC  264 (345)
T ss_dssp             CSSTTTSTTC
T ss_pred             cCCHhHCCCC
Confidence            9999999995

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=96.98  E-value=2.5e-05  Score=81.27  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=48.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-...   ......+.  ++.....   ...   .+..+...|...+|
T Consensus       187 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~~---~s~---~~~~li~~lL~~dp  257 (345)
T 1xjd_A          187 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE---EELFHSIRMDNPFYPRW---LEK---EAKDLLVKLFVREP  257 (345)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTT---SCH---HHHHHHHHHSCSSG
T ss_pred             hhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHHhCCCCCCcc---cCH---HHHHHHHHHhcCCH
Confidence            3554555678999999999999999999999531000   00000010  1111110   111   23456678999999


Q ss_pred             CCCCChH-HHH
Q 003931          748 DTRPSMR-FVA  757 (785)
Q Consensus       748 ~~Rp~m~-~vv  757 (785)
                      ++||++. ||.
T Consensus       258 ~~R~~~~~~i~  268 (345)
T 1xjd_A          258 EKRLGVRGDIR  268 (345)
T ss_dssp             GGSBTTBSCGG
T ss_pred             hHcCCChHHHH
Confidence            9999997 553

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=96.96  E-value=0.00031  Score=73.21  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=25.7

Q ss_pred             hhhhhhc-ccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTM-RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-... ..+.++||||+||++.||+||+.|-
T Consensus       215 PE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          215 PEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             HHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             HHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence            3544333 4678999999999999999999995

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=96.93  E-value=6.7e-05  Score=78.27  Aligned_cols=76  Identities=16%  Similarity=0.343  Sum_probs=45.3

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |+-.....+.++||||+||++.||+||+.|..-...   ......+......-+. ....   .+..+...|...+|++|
T Consensus       191 E~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~---~~~~li~~lL~~dP~~R  263 (353)
T 2i0e_A          191 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELFQSIMEHNVAYPK-SMSK---EAVAICKGLMTKHPGKR  263 (353)
T ss_dssp             HHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHTCSCTTSC
T ss_pred             hhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCCH---HHHHHHHHHhhcCHHHc
Confidence            444455678899999999999999999999531000   0001111111111111 1111   23456678999999999


Q ss_pred             CCh
Q 003931          751 PSM  753 (785)
Q Consensus       751 p~m  753 (785)
                      |++
T Consensus       264 ~~~  266 (353)
T 2i0e_A          264 LGC  266 (353)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=96.83  E-value=0.00012  Score=83.42  Aligned_cols=77  Identities=16%  Similarity=0.351  Sum_probs=47.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...   ......++...+.-+. ....+   +..+.-.|.+.+|++
T Consensus       511 PE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~lL~~dP~~  583 (674)
T 3pfq_A          511 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELFQSIMEHNVAYPK-SMSKE---AVAICKGLMTKHPGK  583 (674)
T ss_dssp             HHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHSSCCCCCT-TSCHH---HHHHHHHHSCSSSTT
T ss_pred             HhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH---HHHHHHHHhCCCCCCc-cCCHH---HHHHHHHHccCCHHH
Confidence            4655666788999999999999999999999531000   0011112222221111 11112   345567899999999


Q ss_pred             CCCh
Q 003931          750 RPSM  753 (785)
Q Consensus       750 Rp~m  753 (785)
                      ||++
T Consensus       584 R~~~  587 (674)
T 3pfq_A          584 RLGC  587 (674)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            9998

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=96.73  E-value=0.00017  Score=79.61  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=48.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccc-ccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLK-DVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-.........+. .+.......+. ....   .+..+...|.+.+|+
T Consensus       354 PEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~-~~s~---~~~dLI~~lL~~dP~  429 (576)
T 2acx_A          354 PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSE-RFSP---QARSLCSQLLCKDPA  429 (576)
T ss_dssp             HHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHTCSSGG
T ss_pred             HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCc-cCCH---HHHHHHHHhccCCHH
Confidence            355555677899999999999999999999953110000000000 00000000000 1111   234556689999999


Q ss_pred             CCC-----ChHHHHH
Q 003931          749 TRP-----SMRFVAQ  758 (785)
Q Consensus       749 ~Rp-----~m~~vv~  758 (785)
                      +||     ++.||.+
T Consensus       430 ~R~g~~~~sa~eil~  444 (576)
T 2acx_A          430 ERLGCRGGSAREVKE  444 (576)
T ss_dssp             GSTTCSSSHHHHHHT
T ss_pred             HcCCCCCCCHHHHHh
Confidence            999     5667653

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=96.71  E-value=0.0003  Score=77.38  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=47.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.++|||||||++.||+||+.|..-...... ......+.+.....+. ....   .+..+...|.+.+|+
T Consensus       358 PE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~-~~s~---~~~~li~~lL~~dP~  433 (543)
T 3c4z_A          358 PELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD-KFSP---ASKDFCEALLQKDPE  433 (543)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHSCSSGG
T ss_pred             hhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCc-ccCH---HHHHHHHHhccCCHh
Confidence            4555556678999999999999999999999531100000 0001111222111111 1111   233456689999999


Q ss_pred             CCCChH
Q 003931          749 TRPSMR  754 (785)
Q Consensus       749 ~Rp~m~  754 (785)
                      +||++.
T Consensus       434 ~R~~~~  439 (543)
T 3c4z_A          434 KRLGFR  439 (543)
T ss_dssp             GSCCCB
T ss_pred             HCCCCc
Confidence            999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.60  E-value=0.00062  Score=77.95  Aligned_cols=73  Identities=11%  Similarity=0.108  Sum_probs=45.7

Q ss_pred             cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC-hHHH
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS-MRFV  756 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~-m~~v  756 (785)
                      .+.++|||||||++.||+||+.|..- .+.      ..     +... ......-..+.++...|.+.+|++||+ +.++
T Consensus       253 ~~~~sDi~slG~~l~~l~~g~~~~~~-~~~------~~-----~~~~-~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l  319 (681)
T 2pzi_A          253 PTVATDIYTVGRTLAALTLDLPTRNG-RYV------DG-----LPED-DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEM  319 (681)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCCEETT-EEC------SS-----CCTT-CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred             CCCceehhhhHHHHHHHHhCCCCCcc-ccc------cc-----cccc-ccccccCHHHHHHHhhhccCChhhCCCHHHHH
Confidence            37899999999999999999877420 000      00     0000 011111123456788999999999995 5556


Q ss_pred             HHHHHhc
Q 003931          757 AQELSAK  763 (785)
Q Consensus       757 v~~l~~~  763 (785)
                      .+.+..+
T Consensus       320 ~~~l~~~  326 (681)
T 2pzi_A          320 SAQLTGV  326 (681)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=96.57  E-value=0.00057  Score=72.66  Aligned_cols=24  Identities=33%  Similarity=0.627  Sum_probs=22.7

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++|||||||++.||+||+.|.
T Consensus       250 ~~~~~DiwSlGvilyell~G~~Pf  273 (410)
T 3v8s_A          250 YGRECDWWSVGVFLYEMLVGDTPF  273 (410)
T ss_dssp             EETHHHHHHHHHHHHHHHHSSCTT
T ss_pred             CCCcceEecchHHHHHHHhCCCCC
Confidence            678999999999999999999995

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=96.56  E-value=0.0011  Score=71.15  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=22.3

Q ss_pred             hcccccccceeeeehhhhhhhhCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      ....+.++||||+||++.||+||+.|
T Consensus       226 ~~~~~~~~DiwSlG~il~ell~g~~p  251 (432)
T 3n9x_A          226 QENYTKSIDIWSTGCIFAELLNMLQS  251 (432)
T ss_dssp             CSCCCTHHHHHHHHHHHHHHHTTCTT
T ss_pred             CCCCCcccccchHHHHHHHHHhcccc
Confidence            44578899999999999999987665

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=96.45  E-value=0.0006  Score=74.03  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             hcccccccceeeeehhhhhhhhCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHP  700 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p  700 (785)
                      ....+.++|||||||++.||+||.+|
T Consensus       258 ~~~~~~~~DiwSlG~il~elltg~~~  283 (458)
T 3rp9_A          258 QENYTEAIDVWSIGCIFAELLNMIKE  283 (458)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCCcHhHHHHHHHHHHHHHHhccc
Confidence            44578999999999999999996544

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=96.37  E-value=0.00045  Score=74.05  Aligned_cols=27  Identities=33%  Similarity=0.583  Sum_probs=24.5

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ....+.++|||||||++.||+||+.|.
T Consensus       255 ~~~~~~~~DvwSlGvil~elltG~~Pf  281 (437)
T 4aw2_A          255 KGRYGPECDWWSLGVCMYEMLYGETPF  281 (437)
T ss_dssp             CCEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             CCCCCCcCeeHHHHHHHHHHHhCCCCC
Confidence            356789999999999999999999995

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.36  E-value=0.00083  Score=62.25  Aligned_cols=12  Identities=17%  Similarity=0.277  Sum_probs=6.2

Q ss_pred             CCCCCcEEECCC
Q 003931          100 NLGKLEYLNLTE  111 (785)
Q Consensus       100 ~l~~L~~L~Ls~  111 (785)
                      +-+.|++|+|++
T Consensus        39 ~n~~L~~L~L~~   50 (197)
T 1pgv_A           39 DDTDLKEVNINN   50 (197)
T ss_dssp             TCSSCCEEECTT
T ss_pred             cCCCccEEECCC
Confidence            344555555555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.25  E-value=0.0013  Score=60.96  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             CCCCCccEEECCCC-CCcccCC---hhhhcCCCCCcEEECCCCCCcccCCc----cccCCCCCcEEEcCCCccc
Q 003931           74 LTCRNLTYLDLSLN-KLSGLIP---ERLFTNLGKLEYLNLTENQFQGKLSP----NVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus        74 ~~l~~L~~L~Ls~n-~i~~~~~---~~~f~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~~~  139 (785)
                      ..-+.|+.|+|+++ .|...--   ...+..-..|++|+|++|.|......    ++..-+.|+.|+|++|.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34456777777664 5542110   11123445566666666665532222    1222344455555554443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.13  E-value=0.0094  Score=51.42  Aligned_cols=56  Identities=23%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             eecccCCccc-CcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCc
Q 003931          540 NLNLSNNHLT-GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS  597 (785)
Q Consensus       540 ~L~ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  597 (785)
                      .++.+++.++ ..+|..+  .++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666664 2344432  245778888888888777777788888888888888775

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=95.98  E-value=0.0019  Score=68.69  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=23.9

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++|||||||++.||+||+.|.
T Consensus       245 ~~~~~~~DiwSlGvilyelltG~~Pf  270 (412)
T 2vd5_A          245 GSYGPECDWWALGVFAYEMFYGQTPF  270 (412)
T ss_dssp             SEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             CCCChHHhhhHHhHHHHHHHhCCCCC
Confidence            46789999999999999999999995

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.83  E-value=0.014  Score=50.26  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=14.5

Q ss_pred             ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCC
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ  113 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~  113 (785)
                      |++|+|++|.|+ .+|..+|..+++|++|+|++|.
T Consensus        33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCC-ccChhhhhhccccCEEEecCCC
Confidence            444444444444 3444444444444444444443

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.71  E-value=0.002  Score=71.70  Aligned_cols=79  Identities=13%  Similarity=0.158  Sum_probs=43.7

Q ss_pred             hhhhhh-cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.. ...+.++|+||+||++.||+||+.|..-............+......-+. ....+   +..+.-.|...+|+
T Consensus       359 PEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~-~~S~~---a~dLI~~lL~~dP~  434 (689)
T 3v5w_A          359 PEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD-SFSPE---LRSLLEGLLQRDVN  434 (689)
T ss_dssp             HHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSCGG
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCc-cCCHH---HHHHHHHHccCCHh
Confidence            354432 34678999999999999999999995210000000000111111111111 11112   23456679999999


Q ss_pred             CCCC
Q 003931          749 TRPS  752 (785)
Q Consensus       749 ~Rp~  752 (785)
                      +|++
T Consensus       435 ~Rl~  438 (689)
T 3v5w_A          435 RRLG  438 (689)
T ss_dssp             GCTT
T ss_pred             HCCC
Confidence            9998

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.20  E-value=1.5  Score=35.27  Aligned_cols=46  Identities=20%  Similarity=0.196  Sum_probs=23.3

Q ss_pred             CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931           40 FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus        40 ~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      .++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            344555555555555555555443 3334444555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.60  E-value=1.5  Score=35.32  Aligned_cols=50  Identities=16%  Similarity=0.075  Sum_probs=43.7

Q ss_pred             CCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC
Q 003931           14 DNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE   64 (785)
Q Consensus        14 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~   64 (785)
                      +..++.+...+|.+|.+|+.+.+-.+ ++.|...+|.+|.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            44577788899999999999999875 889999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	785
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-13
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-13
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-10
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-09
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-09
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-09
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-08
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-08
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-07
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-07
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-07
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-07
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-07
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-07
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	6e-07
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-07
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-07
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	9e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-05
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-05
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-05
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-04
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-04
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-04
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-04
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	7e-04
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-04
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	0.002
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	0.002
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	0.003
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	0.003
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  103 bits (257), Expect = 3e-24
 Identities = 80/398 (20%), Positives = 140/398 (35%), Gaps = 35/398 (8%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
           L +     L + N +  +      L  +  L      +       +  L NL  +   +N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            L+   P  + ++  LV   +N NQ+    P      +               +      
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 390 FSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG 449
               L + + S+ S    L                      +    L N + L R+    
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQ----------LSFGNQVTDLKPLANLTTLERLDISS 184

Query: 450 NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELG 509
           N+ +     A   +     +  + NQ             NL  L L+ N++       L 
Sbjct: 185 NKVSDISVLAKLTNLE--SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLA 238

Query: 510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN 569
           +LT L  L L +N+++   P  L  L KL  L L  N ++   P  ++ LT L  L+L+ 
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 294

Query: 570 NKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQEL 629
           N+L    P        L  L L  N++S   P  + +L  LQ  L  ++N +S      L
Sbjct: 295 NQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQR-LFFANNKVSD--VSSL 347

Query: 630 GKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
             LT++  L+   NQ+S   P  L+++  +  +  +D 
Sbjct: 348 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 5e-20
 Identities = 76/339 (22%), Positives = 118/339 (34%), Gaps = 27/339 (7%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPF----QLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLT 56
           +  L+ L  ++  +N L    P     +L  +            L         ++ +  
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 57  HLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQG 116
              +   +         L+   ++ +       S                 NLT  +   
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 117 KLS------PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL 170
             S        ++KL+NL  L    N+ S   P  I  ++NL  + L  N        +L
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTL 237

Query: 171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS 230
             L NL  LDL  N ++   P  L   T L+ L L  NQ+S      +S L+ L  L   
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-----ISPLAGLTALTNL 290

Query: 231 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE 290
           +   +     + I N   L  L +  N+     P  +  LTKLQ LF   N  S    S 
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SS 346

Query: 291 IEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
           +  LT++  L    NQ+S   P  L NLT +  L L   
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 6e-20
 Identities = 71/393 (18%), Positives = 138/393 (35%), Gaps = 33/393 (8%)

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
            +   + + +    +S ++L ++  L      +    S + +     L  +   NN    
Sbjct: 24  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTD 80

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL 321
             P  +  LTKL  + +  N  +   P       +   L  +       +          
Sbjct: 81  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL- 137

Query: 322 LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381
              +L SN +      +I +++ L +    +        + ++ L  L +  + +N  S 
Sbjct: 138 ---ELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
                      SLI    +NN  S   P  + +   L+EL++NGN         L + +N
Sbjct: 190 ISVLAKLTNLESLI---ATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTN 242

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
           L  +    NQ +           +L  ++L  NQ                 L  ++    
Sbjct: 243 LTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 502 GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTE 561
             I     NL  L  L+L  N ++   P  +  L KL  L  +NN ++     S++NLT 
Sbjct: 301 SPIS----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594
           + +L   +N+++   P  L    ++  L L+  
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.7 bits (216), Expect = 4e-19
 Identities = 81/363 (22%), Positives = 132/363 (36%), Gaps = 33/363 (9%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
           DL ++  L      +      +   L  +  ++   N L   D +   ++  L  + +  
Sbjct: 42  DLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLT--DITPLKNLTKLVDILMNN 97

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT-----------E 111
           N++    P   LT      L  +       +      N  +L    ++           +
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDI-GSMSNLQLVELFNNSFTGQIPSSL 170
               G    ++  L+NL  L       +      +   ++NL+ +   NN  +   P  +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS 230
               NL  L L  N L       L   TNL+ L LA NQ+S   PLS   L+KL +L L 
Sbjct: 218 L--TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLG 271

Query: 231 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE 290
            N +S       +   T LE  + Q              L  L YL LY NN S   P  
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFNNISDISP-- 324

Query: 291 IEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDV 350
           +  LT L+ L  + N++S     +L NLTN+  L    N +S   P  + ++  +    +
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 351 NTN 353
           N  
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 3e-17
 Identities = 73/423 (17%), Positives = 140/423 (33%), Gaps = 59/423 (13%)

Query: 148 SMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV 207
           +++      L   + T  +  +   L  +  L      +       +    NL+ +  + 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI 267
           NQL+   P  L NL+KL D+ +++N ++       + N T L     Q            
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327
               +L    +   +    + S  +                 T    L NLT L  L + 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQL----------SFGNQVTDLKPLANLTTLERLDIS 183

Query: 328 SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDF 387
           SN    +    +  + +L +     NQ+    P                           
Sbjct: 184 SNK--VSDISVLAKLTNLESLIATNNQISDITPLG------------------------- 216

Query: 388 GKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF 447
                +L  +S + N         L S   L +L +  N  +   P  L   + L  ++ 
Sbjct: 217 --ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 448 DGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAE 507
             NQ +     A         +  +  + +          +NL+ L L  N IS   P  
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDI----SPISNLKNLTYLTLYFNNISDISP-- 324

Query: 508 LGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
           + +LT+L  L   +N+++    + L  L  +  L+  +N ++   P  ++NLT +  L L
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 568 SNN 570
           ++ 
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 5e-17
 Identities = 75/398 (18%), Positives = 132/398 (33%), Gaps = 36/398 (9%)

Query: 77  RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATN 136
                  L    ++  + +   T+L ++  L       +  +   V  L+NL  +  + N
Sbjct: 22  AEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 76

Query: 137 KFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL 196
           + +   P  + +++ L  + + NN      P +         L          +     L
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 197 CTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN 256
                              +S  +           +F +       + N T LE L I +
Sbjct: 135 NRLELS----------SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW 316
           N         +  LT L+ L    N  S   P  I   T+L+ L L+GNQL      TL 
Sbjct: 185 NKVS--DISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLA 238

Query: 317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFT 376
           +LTNL  L L +N +S   P  +  +  L    +  NQ+       IS L  L   +   
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-----ISPLAGLTALTNLE 291

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL 436
            N +            +L  ++   N+ S   P    +   L+ L    N  +    + L
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSD--VSSL 347

Query: 437 RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN 474
            N +N+N +    NQ +           R+  + L+  
Sbjct: 348 ANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 5e-17
 Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 38/383 (9%)

Query: 3   DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
            L+E     +   N+   +    + L +V  L      +++ D      + +LT +    
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 75

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
           N+LT   P  +     L  + ++ N+++ + P    TNL  L   N          +   
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 123 SKLSNLIDLRLAT--------------NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS 168
                L    ++                         + +++ L+ +++ +N  +     
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLG 228
           +  +L NL+ L    N ++   P  +   TNL  L+L  NQL      +L++L+ L DL 
Sbjct: 194 A--KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 229 LSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288
           L++N +S       +   T+L  L++  N      P  +  LT L  L L  N       
Sbjct: 248 LANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDI 300

Query: 289 SEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAF 348
           S I  L +L  L L  N +S   P  + +LT L  L   +N +S      + ++ ++   
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 349 DVNTNQLHGELP-ENISRLVKLN 370
               NQ+    P  N++R+ +L 
Sbjct: 357 SAGHNQISDLTPLANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 48/204 (23%), Positives = 78/204 (38%), Gaps = 31/204 (15%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L+ L+ L   +N ++   P  + +   +  L L GN L+       +S+ +LT L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGT--LASLTNLTDLDL 248

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTN-------------------L 101
             N+++   P  +     LT L L  N++S + P    T                    L
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 102 GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS 161
             L YL L  N         VS L+ L  L  A NK S      + +++N+  +   +N 
Sbjct: 307 KNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQ 362

Query: 162 FTGQIPSSLGQLKNLQHLDLRMNA 185
            +   P  L  L  +  L L   A
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 6e-15
 Identities = 84/413 (20%), Positives = 136/413 (32%), Gaps = 61/413 (14%)

Query: 123 SKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           + L+  +   L     +  +   D+  ++ LQ   L   S  G     +  L NL  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 73

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND------------LGL 229
             N L    P  L   T L  + +  NQ++   PL+                       L
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 230 SDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPS 289
           ++       S  +           +Q  SF   +     L        L  ++      S
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 290 EIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFD 349
            + KLT+LE+L  + NQ+S   P  +   TNL  L L  N L       + S+ +L   D
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 350 VNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP 409
           +  NQ+    P  +S L KL +  +  N  S   P      +         N        
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 303

Query: 410 HELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFI 469
             L +   L  LT+  NN +   P  + + + L R+ F  N+ +                
Sbjct: 304 SNLKN---LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--------------- 343

Query: 470 RLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSN 522
                              N++ L    N+IS   P  L NLTR+  L L+  
Sbjct: 344 -----------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN 569
            L       L    +T  +      L ++  L      +       +  L  L  ++ SN
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 570 NKLTGDVPQELGRFDKLLSLNLSHN 594
           N+LT   P  L    KL+ + +++N
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 31/109 (28%)

Query: 557 SNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDL 616
           + L E     L    +T  V Q     D++ +L      +                    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-------------------- 56

Query: 617 SSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFS 665
              S+ G     +  L +L  +N S NQL+   P  L ++  L  +  +
Sbjct: 57  --KSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 1e-20
 Identities = 60/265 (22%), Positives = 93/265 (35%), Gaps = 8/265 (3%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
           +P D+    +  L++L NN  T         LKNL  L L  N ++   P        L 
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
            L L+ NQL          L +L         +   +   L  N   +  L        G
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSG 140

Query: 262 NIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL 321
                   + KL Y+ +   N +  IP  +    SL  L L GN+++     +L  L NL
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 322 LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381
             L L  N++S      + +   L    +N N+L    P  ++    +    +  NN S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA 256

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSG 406
               DF     +    S+S  S   
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 1e-20
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 14/269 (5%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLL 322
           +P ++        L L  N  +     + + L +L  L L  N++S   P     L  L 
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 323 SLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGS 382
            L L  N L         ++  L   +    ++   +   +++++ +   +      SG 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGI 141

Query: 383 IPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNL 442
             G F      L  +  ++ + +  +P  L    +L EL ++GN  T    A L+  +NL
Sbjct: 142 ENGAFQGM-KKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNL 197

Query: 443 NRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISG 502
            ++    N  +     +    P L  + L+ N+ V        + + +  + L  N IS 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISA 256

Query: 503 ------GIPAELGNLTRLGVLSLDSNELT 525
                   P           +SL SN + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 58/301 (19%), Positives = 105/301 (34%), Gaps = 17/301 (5%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
           +L  +  S   L   +P+ L  +      L+L  N+       +   L NL  L L  NK
Sbjct: 11  HLRVVQCSDLGLEK-VPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
            S   PG    +  L+ + L  N            L+ L+  +  +  +  ++   L   
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 198 TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN 257
             +  L     + SG    +   + KL+ + ++D  ++        G    L  L +  N
Sbjct: 127 IVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGN 181

Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317
                    +  L  L  L L  N+ S      +     L  L L+ N+L   +P  L +
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 240

Query: 318 LTNLLSLQLFSNNLSG------TIPPEIGSMASLVAFDVNTNQL-HGELPENISRLVKLN 370
              +  + L +NN+S         P      AS     + +N + + E+  +  R V + 
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 371 K 371
            
Sbjct: 301 A 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 17/290 (5%)

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
            +P D     P    +   NN  +     +  +   L  L +  N  +   P        
Sbjct: 24  KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
           L R+    NQ      K       L        +    +     +   +  L  +  + S
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 502 GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTE 561
           G        + +L  + +    +T  IP  L     L  L+L  N +T     S+  L  
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSL 621
           LA L LS N ++      L     L  L+L++N L  ++P  L +   +Q  + L +N++
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV-VYLHNNNI 254

Query: 622 SG------TIPQELGKLTSLEILNLSRNQLSGR--IPASLSSMISLRSVD 663
           S         P    K  S   ++L  N +      P++   +    +V 
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 12/261 (4%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
              L +  N  T       +N  NL+ +    N+ +     AF    +L+ + LS NQ  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
                     + L   + +  ++   +   L  +  +  L  +  + +G        + K
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKK 151

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           L  + +++ ++T  IP+ +     L  L L  NK+T      L   + L  L LS N +S
Sbjct: 152 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG------RIPA 651
                +L N   L+ +    +N+    +P  L     ++++ L  N +S         P 
Sbjct: 209 AVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 652 SLSSMISLRSVDFSDNELTEL 672
             +   S   V    N +   
Sbjct: 267 YNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 56/300 (18%), Positives = 100/300 (33%), Gaps = 27/300 (9%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
            +   L + +N +         +L+ +  L L  N +       F+ +  L  L L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 65  LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
           L         T + L   +  + K+   +   L  N   +  L     +  G  +     
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQG 148

Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
           +  L  +R+A    +  IP  +    +L  + L  N  T    +SL  L NL  L L  N
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIG 244
           +++      L    +L  L L  N+L    P  L++   +  + L +N +S         
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISA-------- 256

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN--NFSGPIPSEIEKLTSLENLDL 302
                    I +N F    P           + L+ N   +    PS    +     + L
Sbjct: 257 ---------IGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 5/180 (2%)

Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
            + + L L  N+I+     +  NL  L  L L +N+++   P     LVKL  L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 548 LTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNL 607
           L     K    L EL   +    K+   V   L +   ++ L  +    SG        +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM-IVVELGTNPLKSSGIENGAFQGM 149

Query: 608 FVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
             L Y+  ++  +++ TIPQ L    SL  L+L  N+++    ASL  + +L  +  S N
Sbjct: 150 KKLSYI-RIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 5e-14
 Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 32/264 (12%)

Query: 433 PACLRNCS-NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLS 491
           P C   C  +L  V+               + P    + L  N+       D+   +NL 
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT--------------------- 530
            L L  N+IS   P     L +L  L L  N+L                           
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 531 --DLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLS 588
             +    + +  L  +    +G    +   + +L+Y+ +++  +T  +PQ L     L  
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTE 175

Query: 589 LNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGR 648
           L+L  N ++    ++L  L  L   L LS NS+S      L     L  L+L+ N+L  +
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAK-LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 233

Query: 649 IPASLSSMISLRSVDFSDNELTEL 672
           +P  L+    ++ V   +N ++ +
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAI 257

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 47/260 (18%), Positives = 91/260 (35%), Gaps = 13/260 (5%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
            +L  L  L + +N ++   P   + L K+  L L  N L+        ++  L      
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
           + ++     +  L    +  L  +  K SG+     F  + KL Y+ + +       +  
Sbjct: 112 ITKVRKSVFNG-LNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNIT---TIP 166

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
                +L +L L  NK +      +  ++NL  + L  NS +     SL    +L+ L L
Sbjct: 167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSG------GLPLSLSNLSKLNDLGLSDNFLS 235
             N L             +  + L  N +S         P   +  +  + + L  N + 
Sbjct: 227 NNNKLVKVPGGLADHK-YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

Query: 236 -GEISANLIGNWTELESLQI 254
             EI  +         ++Q+
Sbjct: 286 YWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 43/237 (18%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
              L +L+ L +  N L         +L+++R  +     +    ++  + M  +  LG 
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGT 133

Query: 61  YLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
              + +          + L+Y+ ++   ++  IP+ L  +   L  L+L  N+     + 
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPS---LTELHLDGNKITKVDAA 189

Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180
           ++  L+NL  L L+ N  S    G + +  +L+ + L NN    ++P  L   K +Q + 
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248

Query: 181 LRMNALNY------TIPPELGLCTNLSYLALAVNQLSGG--LPLSLSNLSKLNDLGL 229
           L  N ++         P       + S ++L  N +      P +   +     + L
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.4 bits (225), Expect = 1e-20
 Identities = 63/260 (24%), Positives = 88/260 (33%), Gaps = 6/260 (2%)

Query: 297 LENLDLSGNQLSG--TIPPTLWNLTNLLSLQLFSN-NLSGTIPPEIGSMASLVAFDVNTN 353
           + NLDLSG  L     IP +L NL  L  L +    NL G IPP I  +  L    +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
            + G +P+ +S++  L       N  SG++P         +    F  N  SG +P    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT-FDGNRISGAIPDSYG 170

Query: 414 SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSG 473
           S   L        N             N                       +        
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
              +       G  +NL+ L L  NRI G +P  L  L  L  L++  N L G+IP   G
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 534 KLVKLFNLNLSNNHLTGEIP 553
            L +      +NN      P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 9e-19
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 8/254 (3%)

Query: 418 LEELTVNGNNFTG--SLPACLRNCSNLNRVRFDGN-QFTGNITKAFGVHPRLDFIRLSGN 474
           +  L ++G N      +P+ L N   LN +   G     G I  A     +L ++ ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 475 QFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGK 534
              G I     + + L  L    N +SG +P  + +L  L  ++ D N ++G IP   G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 535 LVKLF-NLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH 593
             KLF ++ +S N LTG+IP + +NL         N              +        +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 594 NDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
           +         L          DL +N + GT+PQ L +L  L  LN+S N L G IP   
Sbjct: 232 SLAFDLGKVGLSKNLNGL---DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG 287

Query: 654 SSMISLRSVDFSDN 667
            ++       +++N
Sbjct: 288 GNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 3e-18
 Identities = 69/263 (26%), Positives = 107/263 (40%), Gaps = 6/263 (2%)

Query: 270 LTKLQYLFLYRNNFSG--PIPSEIEKLTSLENLDLSGN-QLSGTIPPTLWNLTNLLSLQL 326
             ++  L L   N     PIPS +  L  L  L + G   L G IPP +  LT L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD 386
              N+SG IP  +  + +LV  D + N L G LP +IS L  L   +   N  SG+IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 387 FGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVR 446
           +G FS    +++ S N  +G++P    +            N      + L       +  
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKI 226

Query: 447 FDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPA 506
                         G+   L+ + L  N+  G +     + + L +L +  N + G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 507 ELGNLTRLGVLSLDSNELTGKIP 529
           + GNL R  V +  +N+     P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 6/260 (2%)

Query: 345 LVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 402
           +   D++   L     +P +++ L  LN   +   N               L  +  ++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 403 SFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGV 462
           + SG +P  L     L  L  + N  +G+LP  + +  NL  + FDGN+ +G I  ++G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 463 HPRLDF-IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDS 521
             +L   + +S N+  G+I P +                         +     +    +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 522 NELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELG 581
           +         L K +   +L   NN + G +P+ ++ L  L  L++S N L G++P + G
Sbjct: 232 SLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 582 RFDKLLSLNLSHNDLSGEIP 601
              +      ++N      P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.0 bits (198), Expect = 4e-17
 Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 7/262 (2%)

Query: 78  NLTYLDLSLNKLSGLIP-ERLFTNLGKLEYLNLTEN-QFQGKLSPNVSKLSNLIDLRLAT 135
            +  LDLS   L    P      NL  L +L +       G + P ++KL+ L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
              SG IP  +  +  L  ++   N+ +G +P S+  L NL  +    N ++  IP   G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 196 LCTNLSYLALAV-NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQI 254
             + L        N+L+G +P + +NL+        +               T+   L  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 255 QNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT 314
            + +F             L  L L  N   G +P  + +L  L +L++S N L G I P 
Sbjct: 231 NSLAFDLGKVGLS---KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQ 286

Query: 315 LWNLTNLLSLQLFSNNLSGTIP 336
             NL         +N      P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 60/297 (20%), Positives = 101/297 (34%), Gaps = 31/297 (10%)

Query: 121 NVSKLSNLIDLRLATNKFSG--PIPGDIGSMSNLQLVELFNN-SFTGQIPSSLGQLKNLQ 177
             ++   + +L L+        PIP  + ++  L  + +    +  G IP ++ +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 178 HLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE 237
           +L +    ++  IP  L     L  L  + N LSG LP S+S+L  L  +    N +SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 238 ISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSL 297
           I  +         S+ I  N   G IPP                N      S +      
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 298 ENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG 357
                            +    NL  L L +N + GT+P  +  +  L + +V+ N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCS 414
           E+P+                          G         +++NN      P   C+
Sbjct: 283 EIPQ-------------------------GGNLQ-RFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 63/268 (23%), Positives = 98/268 (36%), Gaps = 7/268 (2%)

Query: 362 NISRLVKLNKFSVFTNNFSG--SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALE 419
             ++  ++N   +   N      IP                 N+  G +P  +     L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 420 ELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479
            L +   N +G++P  L     L  + F  N  +G +  +    P L  I   GN+  G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 480 ISPDWGECRNLS-NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKL 538
           I   +G    L  ++ + RNR++G IP    NL         S  +     + L    K 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--AFVDLSRNMLEGDASVLFGSDKN 222

Query: 539 FNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG 598
                   +        +     L  LDL NN++ G +PQ L +   L SLN+S N+L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 599 EIPSNLGNLFVLQYMLDLSSNSLSGTIP 626
           EIP   GNL         ++N      P
Sbjct: 283 EIPQ-GGNLQRFDV-SAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 46  WSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 105
             K     +L  L L  N +    P  +   + L  L++S N L G IP+    NL + +
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFD 294

Query: 106 YLNLTENQF 114
                 N+ 
Sbjct: 295 VSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 69/257 (26%)

Query: 461 GVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLD 520
               R++ + LSG                              IP+ L NL  L  L + 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFLYIG 84

Query: 521 SNE-LTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE 579
               L G IP  + KL +L  L +++ +++G IP  +S +  L  LD S N L+G +P  
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 580 LGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQE----------- 628
           +     L+ +    N +SG IP + G+   L   + +S N L+G IP             
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 629 -----------------------------------LGKLTSLEILNLSRNQLSGRIPASL 653
                                              +G   +L  L+L  N++ G +P  L
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 654 SSMISLRSVDFSDNELT 670
           + +  L S++ S N L 
Sbjct: 265 TQLKFLHSLNVSFNNLC 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN 39
           +  L  L  L+V  NNL G IP Q  +L++        N
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 2e-20
 Identities = 51/266 (19%), Positives = 86/266 (32%), Gaps = 7/266 (2%)

Query: 358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFA 417
            +P  I    +  +  +  N  S      F       I    SN     +          
Sbjct: 25  AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
            +    +        PA       L+ +  D           F     L ++ L  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
                 + +  NL++L L  NRIS         L  L  L L  N +    P     L +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           L  L L  N+L+    ++++ L  L YL L++N    D  +    +  L     S +++ 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVP 261

Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSG 623
             +P  L      + +  L++N L G
Sbjct: 262 CSLPQRLAG----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 3e-18
 Identities = 60/266 (22%), Positives = 93/266 (34%), Gaps = 7/266 (2%)

Query: 20  AIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNL 79
           A+P  + +    + + L GN +     + F +  +LT L L+ N L     +       L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS 139
             LDLS N     +    F  LG+L  L+L     Q         L+ L  L L  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN 199
                    + NL  + L  N  +     +   L +L  L L  N + +  P        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 200 LSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259
           L  L L  N LS     +L+ L  L  L L+DN    +        W  L+  +  ++  
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEV 260

Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSG 285
             ++P     L       L  N+  G
Sbjct: 261 PCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 5e-18
 Identities = 58/250 (23%), Positives = 90/250 (36%), Gaps = 4/250 (1%)

Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
            + + ++GN  +    A  R C NL  +    N        AF     L+ + LS N  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 478 GEISPDW-GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV 536
             + P        L  L LDR  +    P     L  L  L L  N L          L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
            L +L L  N ++    ++   L  L  L L  N++    P       +L++L L  N+L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 597 SGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSM 656
           S      L  L  LQY L L+ N               L+    S +++   +P  L+  
Sbjct: 214 SALPTEALAPLRALQY-LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 657 ISLRSVDFSD 666
             L+ +  +D
Sbjct: 272 -DLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (202), Expect = 6e-18
 Identities = 49/267 (18%), Positives = 82/267 (30%), Gaps = 9/267 (3%)

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
           ++P        +   +    N  S        +   L  L ++ N       A     + 
Sbjct: 25  AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 442 LNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
           L ++    N    ++    F    RL  + L            +     L  L L  N +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
                    +L  L  L L  N ++         L  L  L L  N +    P +  +L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNS 620
            L  L L  N L+    + L     L  L L+ N    +       L+        SS+ 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSE 259

Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSG 647
           +  ++PQ L      ++  L+ N L G
Sbjct: 260 VPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 49/277 (17%), Positives = 87/277 (31%), Gaps = 7/277 (2%)

Query: 322 LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381
           ++       L   +P  I +  +     ++ N++      +      L    + +N  + 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
                F   +         N       P        L  L ++        P   R  + 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
           L  +    N         F     L  + L GN+        +    +L  L L +NR++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 502 GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTE 561
              P    +L RL  L L +N L+      L  L  L  L L++N    +   +      
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAW 249

Query: 562 LAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG 598
           L     S++++   +PQ L          L+ NDL G
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-16
 Identities = 58/276 (21%), Positives = 92/276 (33%), Gaps = 8/276 (2%)

Query: 155 VELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGL 214
                      +P  +      Q + L  N +++        C NL+ L L  N L+   
Sbjct: 16  TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 215 PLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 274
             + + L+ L  L LSDN     +          L +L +         P     L  LQ
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 275 YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT 334
           YL+L  N            L +L +L L GN++S         L +L  L L  N ++  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 335 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL 394
            P     +  L+   +  N L     E ++ L  L    +  N +              L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWL 250

Query: 395 INVSFSNNSFSGELPHELCSGFALEELTVNGNNFTG 430
                S++     LP  L +G  L+ L    N+  G
Sbjct: 251 QKFRGSSSEVPCSLPQRL-AGRDLKRLAA--NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 46/258 (17%), Positives = 73/258 (28%), Gaps = 7/258 (2%)

Query: 5   SELQYLSVYDNNLNGAIPFQLSSLRKVR-YLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           +  Q + ++ N ++        + R +                +                
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
           +L    P+       L  L L        +   LF  L  L+YL L +N  Q        
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
            L NL  L L  N+ S         + +L  + L  N      P +   L  L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 184 NALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
           N L+      L     L YL L  N             + L     S + +   +   L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 244 GNWTELESLQIQNNSFMG 261
           G     +  ++  N   G
Sbjct: 270 G----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 4/170 (2%)

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELA 563
           +P  +   ++   + L  N ++            L  L L +N L      + + L  L 
Sbjct: 26  VPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 564 YLDLSNNKLTGDV-PQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
            LDLS+N     V P       +L +L+L    L    P     L  LQY+  L  N+L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQ 142

Query: 623 GTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
                    L +L  L L  N++S     +   + SL  +    N +  +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 3/132 (2%)

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
            +     L   +P  I   ++   + L  N+++            L  L L  N L+   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
            +    L +L+ +    +  L    P     L  L  L+L R  L    P     + +L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 661 SVDFSDNELTEL 672
            +   DN L  L
Sbjct: 133 YLYLQDNALQAL 144

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 9e-13
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 16/272 (5%)

Query: 80  TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS 139
             LDL+   L   +  RL +    +       +     L+ + S    +  + L+ +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIE 59

Query: 140 G-PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPE----- 193
              + G +   S LQ + L     +  I ++L +  NL  L+L   +       +     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 194 ---LGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELE 250
              L               +   +      +++LN  G   N    ++S  +      + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 251 SLQIQNNSFMGNIPPEIGLLTKLQYLFLYR-NNFSGPIPSEIEKLTSLENLDLSGNQLSG 309
                +     +   E   L  LQ+L L R  +       E+ ++ +L+ L + G    G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 310 TIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS 341
           T+      L +L   Q+  ++ +    P IG+
Sbjct: 240 TLQLLKEALPHL---QINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 50/302 (16%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 34  LDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSF-ILTCRNLTYLDLSLNKLSGL 92
           LDL G  L          + S   +        ++ P     +   + ++DLS + +   
Sbjct: 5   LDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 93  IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
               + +   KL+ L+L   +    +   ++K SNL+ L                ++S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL----------------NLSGC 105

Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG 212
                F         S L +L      D     +   +       T L+      N    
Sbjct: 106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165

Query: 213 GLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM-GNIPPEIGLLT 271
            L   +     L  L LSD+ +              L+ L +     +      E+G + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 272 KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL--------WNLTNLLS 323
            L+ L ++     G +    E   +L +L ++ +  +    PT+        W +   L+
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLT 282

Query: 324 LQ 325
           LQ
Sbjct: 283 LQ 284

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 41/251 (16%), Positives = 78/251 (31%), Gaps = 14/251 (5%)

Query: 7   LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKF-SSMPSLTHLGLYLNEL 65
           +       + ++  +    S  R V+++DL  + +E        S    L +L L    L
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 66  TLEFPSFILTCRNLTYLDL-SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK------- 117
           +    + +    NL  L+L   +  S    + L ++  +L+ LNL+      +       
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQ 177
              + +     +       + S          + + L    +            QL  LQ
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 178 HLDL-RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236
           HL L R   +      ELG    L  L +      G L L    L  L    ++ +  + 
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT 260

Query: 237 EISANLIGNWT 247
                +     
Sbjct: 261 IARPTIGNKKN 271

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 38/294 (12%), Positives = 83/294 (28%), Gaps = 24/294 (8%)

Query: 349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 408
           D+    LH ++   +     +  F    +     +   F      + ++  SN+      
Sbjct: 6   DLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS--PFRVQHMDLSNSVIEVST 62

Query: 409 PHELCSGF-ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLD 467
            H + S    L+ L++ G   +  +   L   SNL R+   G            +     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 468 FIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGK 527
              L+ +                 +  + +  +SG                  + + +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---------------YRKNLQKSDL 167

Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSN-NKLTGDVPQELGRFDKL 586
                     +      +  L  +  +    L  L +L LS    +  +   ELG    L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 587 LSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNL 640
            +L +      G +      L      L ++ +  +      +G   + EI  +
Sbjct: 228 KTLQVFGIVPDGTLQLLKEAL----PHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 12/250 (4%)

Query: 421 LTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE- 479
           L + G N    +   L +   +   R   +     + + F    R+  + LS +      
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 480 ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDS--NELTGKIPTDLGKLVK 537
           +     +C  L NL L+  R+S  I   L   + L  L+L          + T L    +
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 538 LFNLNL------SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNL 591
           L  LNL      +  H+   +      +T+L       N    D+   + R   L+ L+L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 592 SHNDLSGEIPSNLGNLFVLQYMLDLSS-NSLSGTIPQELGKLTSLEILNLSRNQLSGRIP 650
           S + +                 L LS    +      ELG++ +L+ L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 651 ASLSSMISLR 660
               ++  L+
Sbjct: 243 LLKEALPHLQ 252

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 9e-13
 Identities = 57/449 (12%), Positives = 112/449 (24%), Gaps = 24/449 (5%)

Query: 151 NLQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNY----TIPPELGLCTNLSYLAL 205
           ++Q +++     +  +    L  L+  Q + L    L       I   L +   L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 206 AVNQLSGGLPLSL-----SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 260
             N+L       +     +   K+  L L +  L+G     L      L +LQ  + S  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 261 GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTN 320
                 + LL +       R          +   +      +   +          N  N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 321 LLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFS 380
              +++        +      + +L          +      I       +     +N  
Sbjct: 183 EAGVRVLCQG----LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 381 GSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCS 440
           G +            +                  G     L    +    SL        
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
               +     +    +   +           S    V   +    E +  +N   D    
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGK----IPTDLGKLVKLFNLNLSNNHLTGEIPKSI 556
                      + L VL L   +++      +   L     L  L+LSNN L       +
Sbjct: 359 EL-CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 557 S-----NLTELAYLDLSNNKLTGDVPQEL 580
                     L  L L +   + ++   L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (136), Expect = 4e-09
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 517 LSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGE----IPKSISNLTELAYLDLSNNK 571
           L +   EL+     +L   L +   + L +  LT      I  ++     LA L+L +N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 572 LTGDVPQELGRFDKLLSLNLSHNDLSG 598
           L       + +  +  S  +    L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 537 KLFNLNLSNNHLTGE----IPKSISNLTELAYLDLSNNKLTGDVPQELGRF-----DKLL 587
            L  L L++  ++      +  ++     L  LDLSNN L      +L          L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 588 SLNLSHNDLSGEIPSNLGNL 607
            L L     S E+   L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 5e-07
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 585 KLLSLNLSHNDLSGE----IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK-----LTSL 635
            L  L L+  D+S      + + L     L+  LDLS+N L      +L +        L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRE-LDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 636 EILNLSRNQLSGRIPASLSSM 656
           E L L     S  +   L ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 586 LLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSG----TIPQELGKLTSLEILNLS 641
           + SL++   +LS    + L  L     ++ L    L+      I   L    +L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 642 RNQLSGRIPASLSSMI-----SLRSVDFSDN 667
            N+L       +   +      ++ +   + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 536 VKLFNLNLSNNHLTGE-IPKSISNLTELAYLDLSNNKLTGDVPQELGRF----DKLLSLN 590
           + + +L++    L+     + +  L +   + L +  LT    +++         L  LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 591 LSHNDLSGEIPSNLGNLF 608
           L  N+L       +    
Sbjct: 62  LRSNELGDVGVHCVLQGL 79

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 7e-07
 Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 78  NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK----LSPNVSKLSNLIDLRL 133
           ++  LD+   +LS      L   L + + + L +          +S  +     L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 134 ATNKFSGPIPGDIGSM---SNLQLVEL 157
            +N+        +       + ++ +L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKL 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 31  VRYLDLGGNFLETPDWSK-FSSMPSLTHLGLYLNELTLE----FPSFILTCRNLTYLDLS 85
           ++ LD+    L    W++    +     + L    LT        S +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 86  LNKLSG----LIPERLFTNLGKLEYLNLTENQFQ 115
            N+L       + + L T   K++ L+L      
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 1e-06
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 614 LDLSSNSLSGT-IPQELGKLTSLEILNLSRNQLSGR----IPASLSSMISLRSVDFSDNE 668
           LD+    LS     + L  L   +++ L    L+      I ++L    +L  ++   NE
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 669 LTELAV 674
           L ++ V
Sbjct: 67  LGDVGV 72

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 557 SNLTELAYLDLSNNKLTGD----VPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLF---- 608
              + L  L L++  ++      +   L     L  L+LS+N L       L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 609 -VLQYMLDLSSNSLSGTIPQELGKL----TSLEIL 638
            +L+  L L     S  +   L  L     SL ++
Sbjct: 426 CLLEQ-LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 4e-06
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 271 TKLQYLFLYRNNFSG----PIPSEIEKLTSLENLDLSGNQLSGTIPPTL-----WNLTNL 321
           + L+ L+L   + S      + + +    SL  LDLS N L       L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 322 LSLQLFSNNLSGTIPPEIGSM 342
             L L+    S  +   + ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 487 CRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK----- 537
              L  L L    +S      + A L     L  L L +N L       L + V+     
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 538 LFNLNLSNNHLTGEIPKSISNLTE 561
           L  L L + + + E+   +  L +
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 143 PGDIGSMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMNALNYTIPPELG--- 195
            G     S L+++ L +   +      + ++L    +L+ LDL  N L      +L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 196 --LCTNLSYLALAVNQLSGGLPLSLSNLSKLN 225
                 L  L L     S  +   L  L K  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 42  ETPDWSKFSSMPSLTHLGLYLNELTLE----FPSFILTCRNLTYLDLSLNKLSG----LI 93
                        L  L L   +++        + +L   +L  LDLS N L       +
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 94  PERLFTNLGKLEYLNLTENQFQGKLSPNVSKL 125
            E +      LE L L +  +  ++   +  L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 614 LDLSSNSLSGT----IPQELGKLTSLEILNLSRNQLSGRIPASLSSMI-----SLRSVDF 664
           L L+   +S +    +   L    SL  L+LS N L       L   +      L  +  
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 665 SDNELTE 671
            D   +E
Sbjct: 434 YDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 127 NLIDLRLATNKFS-GPIPGDIGSMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDL 181
           ++  L +   + S       +  +   Q+V L +   T      I S+L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 182 RMNALNYTIPPELG-----LCTNLSYLAL 205
           R N L       +          +  L+L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 197 CTNLSYLALAVNQLSG----GLPLSLSNLSKLNDLGLSDNFLSGE----ISANLIGNWTE 248
            + L  L LA   +S      L  +L     L +L LS+N L       +  ++      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 249 LESLQIQNNSFMGNIPPEIGLLTK 272
           LE L + +  +   +   +  L K
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 463 HPRLDFIRLSGNQFVGE----ISPDWGECRNLSNLQLDRNRISGGIPAELG-----NLTR 513
              L  + L+           ++       +L  L L  N +      +L          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 514 LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
           L  L L     + ++   L  L K          L 
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEK------DKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 98  FTNLGKLEYLNLTENQFQGK----LSPNVSKLSNLIDLRLATNKFSGPIPGDIGS----- 148
                 L  L L +          L+  +    +L +L L+ N         +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 149 MSNLQLVELFNNSFTGQIPSSLGQL-KNLQHLD 180
              L+ + L++  ++ ++   L  L K+   L 
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 16/94 (17%)

Query: 174 KNLQHLDLRMNALNYT----IPPELGLCTNLSYLALAVNQLSGGLPLSLS-----NLSKL 224
             L+ L L    ++ +    +   L    +L  L L+ N L     L L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 225 NDLGLSDNFLSGEISANLIGNWTELESLQIQNNS 258
             L L D + S E+          L++L+    S
Sbjct: 429 EQLVLYDIYWSEEMED-------RLQALEKDKPS 455

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 218 LSNLSKLNDLGLSDNFLSGEIS---ANLIGNWTELESLQIQNNSFMGNIPPEIG-----L 269
               S L  L L+D  +S       A  +     L  L + NN        ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKL 294
              L+ L LY   +S  +   ++ L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 54  SLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERL---FTNLGKLEYLNL 109
            +  L +   EL+   +   +   +    + L    L+    + +         L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSG 140
             N+        V +       ++       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSM----SNLQLVELFNNSFTGQIPSSLGQ-----LKNL 176
           S L  L LA    S      + +      +L+ ++L NN         L +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 177 QHLDLRMNALNYTIPPEL 194
           + L L     +  +   L
Sbjct: 429 EQLVLYDIYWSEEMEDRL 446

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 8/210 (3%)

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           VSK+++ +++       +  +P D+    +  ++ L  N       ++L     L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
                  T     G    L  L L+ NQL     L  +  +        +   S  +   
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLG 118

Query: 242 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLD 301
            +    EL+ L ++ N      P  +    KL+ L L  NN +      +  L +L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNL 331
           L  N L  TIP   +    L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 10/213 (4%)

Query: 145 DIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLA 204
           ++  +++   V     + T  +P  L   K+   L L  N L       L   T L+ L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL- 60

Query: 205 LAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 264
                L       L     L  LG  D   +   S  L+G      ++   + + + ++P
Sbjct: 61  ----NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL-SGNQLSGTIPPTLWNLTNLLS 323
                          + N    +P  +   T        + N L+      L  L NL +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 324 LQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356
           L L   N   TIP        L    ++ N   
Sbjct: 177 LLL-QENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 47/211 (22%), Positives = 71/211 (33%), Gaps = 8/211 (3%)

Query: 266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ 325
           E+  +     +   + N +  +P ++ K      L LS N L      TL   T L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 326 LFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPG 385
           L  +    T     G++  L   D++ NQL        +           + N   S+P 
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL--PALTVLDVSFNRLTSLPL 117

Query: 386 DFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRV 445
              +    L  +    N      P  L     LE+L++  NN T      L    NL+ +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
               N     I K F     L F  L GN +
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 42/206 (20%), Positives = 60/206 (29%), Gaps = 50/206 (24%)

Query: 507 ELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLD 566
           E+  +     ++ D   LT  +P DL K      L+LS N L      ++   T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 567 LSNNK---------------------------------------------LTGDVPQELG 581
           L   +                                             LT      L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 582 RFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLS 641
              +L  L L  N+L    P  L         L L++N+L+      L  L +L+ L L 
Sbjct: 122 GLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 642 RNQLSGRIPASLSSMISLRSVDFSDN 667
            N L   IP        L       N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 49/209 (23%), Positives = 74/209 (35%), Gaps = 8/209 (3%)

Query: 2   GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
             ++    ++    NL  A+P  L        L L  N L T   +       LT L L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 62  LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
             ELT       L       L  +  +   L+ + L         L+++ N+        
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVSFNRLTSLPLGA 119

Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
           +  L  L +L L  N+     PG +     L+ + L NN+ T      L  L+NL  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQL 210
           + N+  YTIP        L +  L  N  
Sbjct: 180 QENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 42/204 (20%), Positives = 61/204 (29%), Gaps = 25/204 (12%)

Query: 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
           S + V+    + +  LP +L        L ++ N       A L   + L ++  D  + 
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 453 TGNITKAF---------------------GVHPRLDFIRLSGNQFVGEISPDWGECRNLS 491
           T                               P L  + +S N+              L 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 492 NLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE 551
            L L  N +    P  L    +L  LSL +N LT      L  L  L  L L  N L   
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 552 IPKSISNLTELAYLDLSNNKLTGD 575
           IPK       L +  L  N    +
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668
           ++    +L+  +P +L K     IL+LS N L     A+L     L  ++    E
Sbjct: 15  VNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 56/325 (17%), Positives = 95/325 (29%), Gaps = 25/325 (7%)

Query: 295 TSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQ 354
                L+L+   LS ++P    +L    SL    N+L+  +P    S+ SL+  + N   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 355 LHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPHEL 412
           L    P      V  N+        + S        + SL  +     S        ++L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 413 CSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS 472
                L+ L      +  +          L+                    P L  I   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLG--------VLSLDSNEL 524
            N                       +           +++                 N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFD 584
           + +I +       L  LN+SNN L  E+P     L     L  S N L  +VP+      
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ--- 324

Query: 585 KLLSLNLSHNDLSG--EIPSNLGNL 607
            L  L++ +N L    +IP ++ +L
Sbjct: 325 NLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 8e-09
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 542 NLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP 601
               N  + EI         L  L++SNNKL  ++P    R   L  L  S N L+ E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 602 SNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILN 639
               NL      L +  N L    P     +  L + +
Sbjct: 321 ELPQNL----KQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 567 LSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIP 626
              N  + ++         L  LN+S+N L  E+P+    L  L      S N L+  +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL----IASFNHLA-EVP 320

Query: 627 QELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
           +      +L+ L++  N L    P    S+  LR
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 245 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSG 304
               LE L + NN  +  +P       +L+ L    N+ +  +P       +L+ L +  
Sbjct: 282 LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VPEL---PQNLKQLHVEY 333

Query: 305 NQLSGTIPPTLWNLTNL 321
           N L    P    ++ +L
Sbjct: 334 NPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 277 FLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP 336
             Y N  S  I S  +   SLE L++S N+L   +P     L     L    N+L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVP 320

Query: 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLN 370
               ++  L    V  N L  E P+    +  L 
Sbjct: 321 ELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 39  NFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLF 98
           N       S     PSL  L +  N+L  E P+       L  L  S N L+ +      
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPEL--- 322

Query: 99  TNLGKLEYLNLTENQFQGKLSPNVSKLSNL 128
                L+ L++  N  + +       + +L
Sbjct: 323 --PQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 46  WSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 105
            + FS +  L     YLN  + E  S      +L  L++S NKL  L          +LE
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLE 307

Query: 106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQL 154
            L  + N    ++        NL  L +  N      P    S+ +L++
Sbjct: 308 RLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 590 NLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRI 649
               N  S EI S       L+  L++S+N L   +P    +L  L     S N L+  +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEE-LNVSNNKLI-ELPALPPRLERL---IASFNHLA-EV 319

Query: 650 PASLSSMISLRSVDFSDNELTEL 672
           P    +   L+ +    N L E 
Sbjct: 320 PELPQN---LKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 13  YDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSF 72
           Y N  +  I         +  L++  N L        +  P L  L    N L  E P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA-EVPEL 322

Query: 73  ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
               +NL  L +  N L    P+ +  ++  L  +N
Sbjct: 323 P---QNLKQLHVEYNPLREF-PD-IPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236
                 +NA +  I     L  +L  L ++ N+L   LP     L +L     S N L+ 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA- 317

Query: 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 274
                +      L+ L ++ N      P     +  L+
Sbjct: 318 ----EVPELPQNLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 108 NLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP 167
               N    ++        +L +L ++ NK    +P     +  L       N    ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIA---SFNHLA-EVP 320

Query: 168 SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
                  NL+ L +  N L    P       +L
Sbjct: 321 ELPQ---NLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
           L+L++  LS ++P+    L SL     S N L+  +P       SL+S+   +N L  L
Sbjct: 43  LELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQ---SLKSLLVDNNNLKAL 93

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E   T + T K DV+SFGV+  E+M    P     +   ++ +  +  +RL  P      
Sbjct: 204 ESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRRLLQPEYCPDP 262

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPE 770
                  V L C     + RPS   +   +SA    ++ E
Sbjct: 263 L----YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 298

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 661 SVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQR 720
           S+ +   E+  +      + + DV++FG+V  E+M G+ P   I +   +  +  V    
Sbjct: 169 SILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR--DQIIFMVGRGY 226

Query: 721 LPPPTGQLAEAVVLTI-NVALACTSTTPDTRPSMRFVAQELSAKTQAYLPE 770
           L P   ++       +  +   C     D RP    +   +    ++ LP+
Sbjct: 227 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS-LPK 276

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           L+L++  LT  +   +  L  + +LDLS+N+L    P        L  L +     +   
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGT-IPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
             +          L L +N L  +   Q L     L +LNL  N L          +  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSG 623
            L L++  LT  V   L +   +  L+LSHN L    P+ L  L  L+ +    ++  + 
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVL---QASDNAL 55

Query: 624 TIPQELGKLTSLEILNLSRNQL-SGRIPASLSSMISLRSVDFSDNELTEL 672
                +  L  L+ L L  N+L        L S   L  ++   N L + 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 8   QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
           + L +   +L   +   L  L  V +LDL  N L        +++  L  L    ++  L
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVL--QASDNAL 55

Query: 68  EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117
           E    +     L  L L  N+L      +   +  +L  LNL  N    +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261
            L LA   L+      L  L  +  L LS N L     A  +     LE LQ  +N+   
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE- 56

Query: 262 NIPPEIGLLTKLQYLFLYRNNF-SGPIPSEIEKLTSLENLDLSGNQLSG------TIPPT 314
                +  L +LQ L L  N          +     L  L+L GN L         +   
Sbjct: 57  -NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 315 LWNLTNLLS 323
           L +++++L+
Sbjct: 116 LPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 471 LSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT 530
           L+       +     +   +++L L  NR+    P  L  L  L VL   +++   +   
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVL--QASDNALENVD 59

Query: 531 DLGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSL 589
            +  L +L  L L NN L      + + +   L  L+L  N L  +   +    + L S+
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 590 N 590
           +
Sbjct: 120 S 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 81  YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSG 140
            L L+   L+ L        L  + +L+L+ N+ +    P ++ L  L  L+ A++    
Sbjct: 2   VLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ-ASDNALE 56

Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
            + G        +L+   N          L     L  L+L+ N+L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 60  LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
           L+L    L     +     +T+LDLS N+L  L P      L  LE L  ++N  +    
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENV-- 58

Query: 120 PNVSKLSNLIDLRLATNKF-SGPIPGDIGSMSNLQLVELFNNSFTGQ---IPSSLGQLKN 175
             V+ L  L +L L  N+         + S   L L+ L  NS   +          L +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 176 LQHL 179
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 8/121 (6%)

Query: 227 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286
           L L+   L+       +     +  L + +N      PP +  L  L+ L    N     
Sbjct: 3   LHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNAL--E 56

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPP-TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL 345
               +  L  L+ L L  N+L  +     L +   L+ L L  N+L          +A +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

Query: 346 V 346
           +
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359
           L L+   L  T+   L  L  +  L L  N L   +PP + ++  L    +  +    E 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCL--EVLQASDNALEN 57

Query: 360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE 407
            + ++ L +L +  +  N    S         P L+ ++   NS   E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 1   MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
           +  L  + +L +  N L    P  L++LR +  L    N LE  D            L L
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRL--QELLL 72

Query: 61  YLNELT-LEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGKLEYL 107
             N L        +++C  L  L+L  N L     I ERL   L  +  +
Sbjct: 73  CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 30/330 (9%), Positives = 88/330 (26%), Gaps = 32/330 (9%)

Query: 286 PIPSEIEKLTSLENLDLSGNQLSG----TIPPTLWNLTNLLSLQLFSN---NLSGTIPPE 338
            + + + +  S++ + LSGN +       +   + +  +L   +        +   IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 339 IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVS 398
           +  +   +      + +            +     +  +     +        P      
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 399 FSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITK 458
                    +  +  +   L  +    N                +R+          I  
Sbjct: 142 ARALQEL-AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLS 518
               H  L+ +       V ++  +       S L +            L +        
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND-------- 252

Query: 519 LDSNELTGKIPTDLG------KLVKLFNLNLSNNHLTGEIPKSI-----SNLTELAYLDL 567
                L+ +    +       + + L  L L  N +  +  +++       + +L +L+L
Sbjct: 253 ---CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 568 SNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597
           + N+ + +    +    ++ S      +L 
Sbjct: 310 NGNRFSEE-DDVVDEIREVFSTR-GRGELD 337

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.5 bits (116), Expect = 9e-07
 Identities = 49/341 (14%), Positives = 92/341 (26%), Gaps = 39/341 (11%)

Query: 54  SLTHLGLYLNELTLE----FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK---LEY 106
           S+    L L+ +T E      + +L   ++  + LS N +       L  N+     LE 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 107 LNLTENQ----------FQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156
              ++                L   + K   L  +RL+ N F       +    +     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPL 216
                    +    G        +L +N      PP   +    + L     +       
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 217 SLSNLSKLNDLGLSDNFLSGEISA-----NLIGNWTELESLQIQNNSFMGNIPPEIGLLT 271
           S   L  +  +         E                        +     +   +    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 272 KLQYLFLYRNNFSGPIPSEI------EKLTSLENLDLSGNQLSGTIPPTLW-----NLTN 320
            L+ L L     S    + +       +   L+ L L  N++      TL       + +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 321 LLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361
           LL L+L  N  S      +  +  +      + +  GEL E
Sbjct: 304 LLFLELNGNRFSE-EDDVVDEIREVF-----STRGRGELDE 338

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 37/314 (11%), Positives = 74/314 (23%), Gaps = 31/314 (9%)

Query: 263 IPPEIGLLTKLQYLFLYRNNFSGP----IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318
           +   +     ++ + L  N         +   I     LE  + S              L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 319 TNLLSL-----QLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFS 373
             LL       +L +  LS            +     +T   H  L  N        K +
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 374 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC----------SGFALEELTV 423
                 + +          S+I       + S +   +                      
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 424 NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD 483
             +     L  C        +     +  +  +  A    P L  + L+        +  
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 484 WGEC------RNLSNLQLDRNRISGGIPAEL-----GNLTRLGVLSLDSNELTGKIPTDL 532
             +         L  L+L  N I       L       +  L  L L+ N    +    +
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVV 321

Query: 533 GKLVKLFNLNLSNN 546
            ++ ++F+      
Sbjct: 322 DEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 39/312 (12%), Positives = 85/312 (27%), Gaps = 33/312 (10%)

Query: 175 NLQHLDLRMNALNY----TIPPELGLCTNLSYLALAVNQLSG----GLPLSLSNLSKLND 226
           +++   L+++A+      ++   L    ++  + L+ N +       L  ++++   L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 227 LGLSDNFLS------GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 280
              SD F         E    L+    +   L     S     P     L          
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 281 NNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIG 340
            +          +  +     L    ++          + +       N           
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 341 SMASLVAFDVNTNQLHGELPE--------NISRLVKLNKFSVFTNNFSGSIPGDFGKFSP 392
           S   L    +  N +  E  E            L  L+       +   S      K  P
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 393 SLINVSFSNNSFSGELPHELCSGFA------LEELTVNGNNFTG----SLPACLR-NCSN 441
           +L  +  ++   S      +   F+      L+ L +  N        +L   +     +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 442 LNRVRFDGNQFT 453
           L  +  +GN+F+
Sbjct: 304 LLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 51/369 (13%), Positives = 92/369 (24%), Gaps = 57/369 (15%)

Query: 322 LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381
           L L   +     ++   +    S+    ++ N +  E    +S  +   K          
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK---------- 59

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSN 441
                       L    FS+                   +          L   L  C  
Sbjct: 60  -----------DLEIAEFSDIF--------------TGRVKDEIPEALRLLLQALLKCPK 94

Query: 442 LNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRIS 501
           L+ VR   N F     +                     + P  G     +  +L  N+ +
Sbjct: 95  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 154

Query: 502 GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE------IPKS 555
              P     +     L   S +   K       L  +  +         E      +   
Sbjct: 155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 214

Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYM-- 613
                     +   +  +  +   L  +  L  L L+   LS    + + + F       
Sbjct: 215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 274

Query: 614 ---LDLSSNSLSGTIPQEL-----GKLTSLEILNLSRNQLS--GRIPASLSSMISLRSVD 663
              L L  N +     + L      K+  L  L L+ N+ S    +   +  + S R   
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR--- 331

Query: 664 FSDNELTEL 672
               EL EL
Sbjct: 332 -GRGELDEL 339

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E     + T   DV+SFG+V  EVM           LS    +K + D    P       
Sbjct: 183 EAISYRKFTSASDVWSFGIVMWEVMTYGERPY--WELSNHEVMKAINDGFRLPTPMDCPS 240

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTM 775
           A+     + + C       RP    +   L    +A  P+ L T+
Sbjct: 241 AI---YQLMMQCWQQERARRPKFADIVSILDKLIRA--PDSLKTL 280

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E+    R + K DV+SFGV+  EV           S S E+        RL  P      
Sbjct: 172 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-EVVEDISTGFRLYKPRLASTH 230

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQELS 761
                  +   C    P+ RP+   + ++L+
Sbjct: 231 V----YQIMNHCWKERPEDRPAFSRLLRQLA 257

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.9 bits (126), Expect = 5e-08
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E     R T + DV+++GVV  E+            ++ E  +  V D  +         
Sbjct: 212 ESIFYNRYTTESDVWAYGVVLWEIFSYGLQ--PYYGMAHEEVIYYVRDGNILACPENCPL 269

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQEL 760
            +    N+   C S  P  RPS   + + L
Sbjct: 270 EL---YNLMRLCWSKLPADRPSFCSIHRIL 296

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 7e-08
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVL 734
               T K DV+SFG++  E++          +   E+        R+  P     E    
Sbjct: 184 YGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-EVIQNLERGYRMVRPDNCPEEL--- 239

Query: 735 TINVALACTSTTPDTRPSMRFVAQEL 760
              +   C    P+ RP+  ++   L
Sbjct: 240 -YQLMRLCWKERPEDRPTFDYLRSVL 264

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 675 TMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVV 733
             + T   DV+S+G+V  EVM  G  P   +T+   ++      D RLPPP    +    
Sbjct: 207 YRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ--DVINAIEQDYRLPPPMDCPSAL-- 262

Query: 734 LTINVALACTSTTPDTRPSMRFVAQEL 760
               + L C     + RP    +   L
Sbjct: 263 --HQLMLDCWQKDRNHRPKFGQIVNTL 287

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGE------------LITSLSGELFLKDVLDQRLPPP 724
               + D+++ G+V  E+      G             + +  S E   K V +Q+L P 
Sbjct: 194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPN 253

Query: 725 ---TGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELS 761
                Q  EA+ +   +   C       R +   + + LS
Sbjct: 254 IPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 21/215 (9%)

Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
           L+N I +    +  +  +      +  +  +  F    T      +  L NL  L+L+ N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 185 ALNYTIPPE---LGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241
            +    P +         LS   L       GL    +       +              
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 242 LIGNWTELESLQIQNNSFMGNI----------PPEIGLLTKLQYLFLYRNNFSGPIPSEI 291
           L  +  ++ ++                        +  L+KL  L    N  S   P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL 326
             L +L  + L  NQ+S   P  L N +NL  + L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVN 351
             L +   +    + ++ T+  T  +L  + +L  F   ++      +  + +L+  ++ 
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 352 TNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE 411
            NQ+                    T      + G+  K   ++  +              
Sbjct: 72  DNQITDL-----------APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 412 LCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL 471
             +  A              +          N           +         +L  ++ 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 472 SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNE 523
             N+             NL  + L  N+IS   P  L N + L +++L +N+
Sbjct: 181 DDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 19/229 (8%)

Query: 317 NLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFT 376
            L N + +    +N++ T+      +  +         +     E +  L  L    +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 377 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACL 436
           N               +L  ++    S +        +G    +     +          
Sbjct: 73  NQI------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI-----TD 121

Query: 437 RNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLD 496
                              IT    +    +   LS                 L+ L+ D
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 497 RNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
            N+IS   P  L +L  L  + L +N+++   P  L     LF + L+N
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 22/215 (10%)

Query: 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQF 452
           + I ++   ++ +  +      G  +  L+  G   T ++   ++  +NL  +    NQ 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 453 TGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
           T               +  +  + V  I+                +       + L  L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 513 RLGVLSLDSNELTGKI--------------PTDLGKLVKLFNLNLSNNHLTGEIPKSISN 558
                  + + L G                 T L  L KL  L   +N ++   P  +++
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSH 593
           L  L  + L NN+++   P  L     L  + L++
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 22/219 (10%)

Query: 4   LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
           L+    ++   +N+   +    + L  +  L   G  +          + +L  L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT--TIEGVQYLNNLIGLELKDN 73

Query: 64  ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK------LEYLNLTENQFQGK 117
           ++T   P   LT      L  +  K    I                 +   L        
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 118 LSPNVSKLSNLIDLRLA-------TNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL 170
           L  ++++++N+  L                     + ++S L  ++  +N  +   P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
             L NL  + L+ N ++   P  L   +NL  + L  NQ
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 19/226 (8%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
           L     +   ++N +  +      L  +  L   G  ++      +  L NL+ L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            +      ++  + +L          +     +    ++  K    T+     +    G 
Sbjct: 74  QI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 390 FSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG 449
            +  ++ +  +  +    L       +      ++  N   S    L N S L  ++ D 
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQY------LSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 450 NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495
           N+ +          P L  + L  NQ             NL  + L
Sbjct: 183 NKISDIS--PLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 46/227 (20%)

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV 536
           +  I PD     N   +   ++ ++  +     +L  +  LS     +T      +  L 
Sbjct: 9   INVIFPDPA-LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLN 63

Query: 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
            L  L L +N +T   P           L  +  K    +          L+     +  
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 597 SGEIPSNLGNLFVLQYML-------------------------------------DLSSN 619
                SNL  L++    +                                         N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSD 666
            +S   P  L  L +L  ++L  NQ+S   P  L++  +L  V  ++
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E     + + K DV+SFG++  E+            L  ++  +     ++  P G    
Sbjct: 170 EALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK-DVVPRVEKGYKMDAPDGCPPA 228

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQEL 760
                  V   C       RPS   + ++L
Sbjct: 229 V----YEVMKNCWHLDAAMRPSFLQLREQL 254

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLA 729
           E     + + K DV+SFGV+  E    G+ P   +     E+       +R+  P G   
Sbjct: 180 ECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGERMGCPAGCPR 237

Query: 730 EAVVLTINVALACTSTTPDTRPSMRFVAQEL 760
           E      ++   C +   + RP    V   L
Sbjct: 238 EM----YDLMNLCWTYDVENRPGFAAVELRL 264

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVL 734
             + + K DV++FGV+  E+            LS +++     D R+  P G   +    
Sbjct: 190 YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS-QVYELLEKDYRMERPEGCPEKV--- 245

Query: 735 TINVALACTSTTPDTRPSMRFVAQEL 760
              +  AC    P  RPS   + Q  
Sbjct: 246 -YELMRACWQWNPSDRPSFAEIHQAF 270

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVM-MGRHPGELITSLSGELFLKDVLDQRLPPPTGQLA 729
           E+ +  + + K D+++FGV+  E+  +G+ P E  T  + E         RL  P     
Sbjct: 171 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT--NSETAEHIAQGLRLYRPHLASE 228

Query: 730 EAVVLTINVALACTSTTPDTRPSMRFVAQEL 760
           +       +  +C     D RP+ + +   +
Sbjct: 229 KV----YTIMYSCWHEKADERPTFKILLSNI 255

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLA 729
            E       T   DV+S+GV+  E++          + + EL+ K     RL  P     
Sbjct: 195 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-ELYEKLPQGYRLEKPLNCDD 253

Query: 730 EAVVLTINVALACTSTTPDTRPSMRFVAQELS 761
           E      ++   C    P  RPS   +   L+
Sbjct: 254 EV----YDLMRQCWREKPYERPSFAQILVSLN 281

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E    M   +K D++S G +  E+     P    T+ S +     + + +      + ++
Sbjct: 184 EQMNRMSYNEKSDIWSLGCLLYELCALMPP---FTAFSQKELAGKIREGKFRRIPYRYSD 240

Query: 731 AVVLTINVALACTSTTPDTRPSMR 754
            +     +     +     RPS+ 
Sbjct: 241 EL---NEIITRMLNLKDYHRPSVE 261

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 6e-07
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVL 734
             R T K DV+SFG++  E+            +     L  V      P   +  E++  
Sbjct: 188 YGRFTIKSDVWSFGILLTELTTKGRV--PYPGMVNREVLDQVERGYRMPCPPECPESL-- 243

Query: 735 TINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEP 771
             ++   C    P+ RP+  ++   L     +  P+ 
Sbjct: 244 -HDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY 279

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 6e-07
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLA 729
           E     R T   DV+ FGV   E++M G  P + + +   ++  +    +RLP P     
Sbjct: 179 ESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGERLPMPPNCPP 236

Query: 730 EAVVLTINVALACTSTTPDTRPSMRFVAQELSA 762
                  ++   C +  P  RP    +  +LS 
Sbjct: 237 TL----YSLMTKCWAYDPSRRPRFTELKAQLST 265

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E       T + DV+SFGV+  E+            +  ELF       R+  P+    E
Sbjct: 207 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE-ELFKLLKEGHRMDKPSNCTNE 265

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQELS 761
                  +   C    P  RP+ + + ++L 
Sbjct: 266 L----YMMMRDCWHAVPSQRPTFKQLVEDLD 292

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 675 TMRVTDKCDVFSFGVVALEVM-MGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVV 733
             + + + DV+S+GV   E +  G+ P + +     E+       +R+  P     E   
Sbjct: 186 FRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKRMECPPECPPEL-- 241

Query: 734 LTINVALACTSTTPDTRPSMRFVAQELSA 762
               +   C     + RP    V Q + A
Sbjct: 242 --YALMSDCWIYKWEDRPDFLTVEQRMRA 268

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 9e-07
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E       T   DV+SFGVV  E+            LS E  L+ V++  L        +
Sbjct: 205 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQ--PYQGLSNEQVLRFVMEGGLLDKPDNCPD 262

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEP 771
            +     +   C    P  RPS   +   +  + +    E 
Sbjct: 263 ML---FELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREV 300

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 148 SMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV 207
           + +      L   S T  +  +  +L ++  +    + +       +    N++ L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLS---------------GEISANLIGNWTELESL 252
           N+L+   PL+         L  +                        +++ G     +  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 253 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
            +   +        +  LTKL  L L  N  S  +P  +  LT L+NL LS N +S    
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--L 193

Query: 313 PTLWNLTNLLSLQLFS 328
             L  L NL  L+LFS
Sbjct: 194 RALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 37/204 (18%), Positives = 75/204 (36%), Gaps = 24/204 (11%)

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV 536
           + +I  D           L +  ++  +      L  +  +  +++++       +  L 
Sbjct: 14  IKQIFSDDA-FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLP 68

Query: 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDL 596
            +  L L+ N LT   P  ++NL  L +L L  NK+      +  +  K LSL  +    
Sbjct: 69  NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126

Query: 597 SGEI---------------PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLS 641
              +                +++  L  L  +  LS      +    L  LT L+ L LS
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 642 RNQLSGRIPASLSSMISLRSVDFS 665
           +N +S     +L+ + +L  ++  
Sbjct: 187 KNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 26/204 (12%), Positives = 57/204 (27%), Gaps = 17/204 (8%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
             +     L + + +  +     +L S++ +  + + +       +  L N+  L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGK 389
            L+   P         +  D N  +    L +           S+   +   S       
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK------KLKSLSLEHNGISDINGLVH 132

Query: 390 FSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDG 449
                     +N      +   L      +  T++  +   S    L   + L  +    
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLT-----KLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187

Query: 450 NQFTGNITKAFGVHPRLDFIRLSG 473
           N  +    +A      LD + L  
Sbjct: 188 NHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 17/206 (8%)

Query: 99  TNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158
               +    NL +      ++   ++L+++  +    +         I  + N+  + L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSL 218
            N  T         L NL++L       N                    +     +   L
Sbjct: 77  GNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GL 130

Query: 219 SNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 278
            +L +L  L L +N ++     + +          +       +    +  LTKLQ L+L
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDT-----LSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 279 YRNNFSGPIPSEIEKLTSLENLDLSG 304
            +N+ S      +  L +L+ L+L  
Sbjct: 186 SKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 24/192 (12%)

Query: 394 LINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT 453
            I  +    S +  +     +  +++++  N ++        ++   N+ ++  +GN+ T
Sbjct: 26  TIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 454 GNITKAFGVHPRLDFIRLSGNQFVGEISPDW----------------GECRNLSNLQLDR 497
                A   +    F+  +  + +  +                    G         L  
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
                     L  LT+L  LSL+ N+++  +P  L  L KL NL LS NH++    ++++
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALA 197

Query: 558 NLTELAYLDLSN 569
            L  L  L+L +
Sbjct: 198 GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 17/208 (8%)

Query: 23  FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82
           F   +  +    +L        D    + + S+  +    +++       I    N+T L
Sbjct: 18  FSDDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 83  DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPI 142
            L+ NKL+          L  L+ L             +  K    +      +     I
Sbjct: 74  FLNGNKLTD------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127

Query: 143 PGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY 202
            G +       L    N      + S L +L  L   D +++ +       L   T L  
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-----VPLAGLTKLQN 182

Query: 203 LALAVNQLSGGLPLSLSNLSKLNDLGLS 230
           L L+ N +S  L  +L+ L  L+ L L 
Sbjct: 183 LYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 32/215 (14%), Positives = 57/215 (26%), Gaps = 6/215 (2%)

Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
            N I+LR    K      G      +L+ +E+  N     I + +       H      A
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 186 LNYTIPPELGLCTNLSYLALAVNQL---SGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242
            N             +   L ++            + +L K+      +  +      + 
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
           +G   E   L +  N                +      NN            +    LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPP 337
           S  ++       L NL  L +      NL   +P 
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 34/227 (14%), Positives = 59/227 (25%), Gaps = 6/227 (2%)

Query: 348 FDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL-INVSFSNNSFSG 406
           F    +++  E+P ++ R     +             G F  F     I +S ++     
Sbjct: 13  FLCQESKVT-EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRL 466
           E           E      NN     P   +N  NL  +                   + 
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 467 DFIRLSG--NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
             + +    N    E +   G       L L++N I               +   D+N L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNK 571
                           L++S   +       + NL +L      N K
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 9/238 (3%)

Query: 296 SLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355
           S        ++++  IP  L    N + L+     L             L   +++ N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 356 HGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSG 415
              +  ++   +            +          +   +     +N+    LP      
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 416 FAL---EELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS 472
                  ++  N N  T    + +        +  + N        AF      +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT 530
            N      +  +        L + R RI       L NL +L   S  + +   K+PT
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 26/222 (11%), Positives = 53/222 (23%), Gaps = 8/222 (3%)

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTI---PPEIGSMA 343
           IPS++    +   L     +L            +L  +++  N++   I           
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 344 SLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS 403
             +  +   N L+       +           T                 L+++  + N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 404 FSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVH 463
            + E    +   F    L +N N                     D N         F   
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 464 PRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIP 505
                + +S  +    +        NL  L+         +P
Sbjct: 201 SGPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 33/240 (13%), Positives = 59/240 (24%), Gaps = 9/240 (3%)

Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
            H +C            +  T  +P+ L    N   +RF   +       AF     L+ 
Sbjct: 2   HHRICHCS-NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 57

Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT--- 525
           I +S N  +  I  D        +        +              +  L  +      
Sbjct: 58  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 117

Query: 526 -GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFD 584
              +         L ++  + N  T E    +    E   L L+ N +            
Sbjct: 118 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ 177

Query: 585 KLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQ 644
                   +N+L                 LD+S   +       L  L  L   +    +
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVI-LDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 36/247 (14%), Positives = 71/247 (28%), Gaps = 11/247 (4%)

Query: 70  PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNL- 128
              I  C N        +K++  IP  L  N      L     + +       S   +L 
Sbjct: 2   HHRICHCSNRV-FLCQESKVTE-IPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLE 56

Query: 129 -IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
            I++                     ++     N+     P +   L NLQ+L +    + 
Sbjct: 57  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116

Query: 188 YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT 247
           +              L +  N     +  +         + L  N    +   N   N T
Sbjct: 117 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT 176

Query: 248 ELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
           +L+ L + +N+ +  +P ++    +    L + R          +E L  L        +
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

Query: 307 LSGTIPP 313
               +P 
Sbjct: 237 ---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 33  YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL 92
            L L  N ++      F+            N L                LD+S  ++   
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS- 215

Query: 93  IPERLFTNLGKLEYLNL 109
           +P     NL KL   + 
Sbjct: 216 LPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 625 IPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
                   +   IL++SR ++       L ++  LR+       L +L
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 26/222 (11%), Positives = 56/222 (25%), Gaps = 8/222 (3%)

Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
           IP D+    N   +             +     +L+ +++  N +   I  ++       
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 202 YLALA---VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS 258
           +        N L        +  +    L  +           +      L  +Q   N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 259 FMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318
                   +GL  +   L+L +N                E      N L           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 360
           +  + L +    +       + ++  L A      +   +LP
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 30/225 (13%), Positives = 59/225 (26%), Gaps = 10/225 (4%)

Query: 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHEL--CSGFALEELTVNGNNFTGSLPACLRNC 439
            IP D      + I + F                      E++ N               
Sbjct: 22  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEI--SPDWGECRNLSNLQLDR 497
                     N       +AF   P L ++ +S                 + L ++Q + 
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
           N  +    + +G      +L L+ N +                    NN+L         
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPS 602
             +    LD+S  ++       L    KL + +  +     ++P+
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVM-MGRHPGELITSLSGELFLKDVLDQRLPPPTGQLA 729
           E  +    T + DV+S+GV   E+M  G  P + I   + E+       +RLP P     
Sbjct: 183 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEKGERLPQPPICTI 240

Query: 730 EAVVLTINVALACTSTTPDTRPSMRFVAQELS 761
           +       + + C     D+RP  R +  E S
Sbjct: 241 DV----YMIMVKCWMIDADSRPKFRELIIEFS 268

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVL 734
               T + DV+S+G+   E+            +  + +       R+  P    AE    
Sbjct: 221 NCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEM--- 277

Query: 735 TINVALACTSTTPDTRPSMRFVAQEL 760
             ++   C    P  RP+ + + Q +
Sbjct: 278 -YDIMKTCWDADPLKRPTFKQIVQLI 302

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 5/169 (2%)

Query: 63  NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV 122
             L  E P  I    + T L L+ N+L  +  + LF  L  L  L L  NQ  G      
Sbjct: 18  RGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
              S++ +L+L  NK           +  L+ + L++N  +  +P S   L +L  L+  
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-L 133

Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSD 231
            +               L   +L       G P  + ++ ++ DL  S+
Sbjct: 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDV-QIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 488 RNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
            + + L L+ N +       L G L  L  L L  N+LTG  P        +  L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 547 HLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGN 606
            +     K    L +L  L+L +N+++  +P      + L SLNL+ N  +      L  
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH--LAW 146

Query: 607 LFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQL 645
                    L+  +     P +   +  ++I +L  ++ 
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 8/186 (4%)

Query: 397 VSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR-NCSNLNRVRFDGNQFTGN 455
           V  +      E+P ++       EL +N N         L     +L ++    NQ TG 
Sbjct: 13  VDCTGRGLK-EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 456 ITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLG 515
              AF     +  ++L  N+     +  +     L  L L  N+IS  +P    +L  L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 516 VLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGD 575
            L+L SN               L   +L+        P  + ++      DL +++    
Sbjct: 130 SLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRDVQ---IKDLPHSEFKCS 185

Query: 576 VPQELG 581
                G
Sbjct: 186 SENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600
           ++ +   L  EIP+ I        L L++N+L       L      L       +    I
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 601 PSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLR 660
             N          L L  N +     +    L  L+ LNL  NQ+S  +P S   + SL 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 661 SVDF 664
           S++ 
Sbjct: 130 SLNL 133

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 8/168 (4%)

Query: 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLFSNNLSGTIPPEIGSMASL 345
           IP +I        L L+ N+L       L+  L +L+ L+L  N L+G  P      + +
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 346 VAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS 405
               +  N++     +    L +L   +++ N  S  +PG F     SL +++ ++N F+
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNLASNPFN 139

Query: 406 GELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT 453
                   + +   + ++NG       P+ +R+    +      ++F 
Sbjct: 140 CNCHLAWFAEWLR-KKSLNGGAARCGAPSKVRDVQIKD---LPHSEFK 183

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
              + +  + + D+ S G V +   +G  P + + + +     + + ++++  P   L +
Sbjct: 183 NTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCK 242

Query: 731 AVVLTI-NVALACTSTTPDTRPSMRFVAQEL 760
                       C S   D +P   ++ Q  
Sbjct: 243 GYPSEFATYLNFCRSLRFDDKPDYSYLRQLF 273

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVL 734
               T + DV+SFGV+  E+            +  E   +     R+  P     E    
Sbjct: 210 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEM--- 266

Query: 735 TINVALACTSTTPDTRPSMRFVAQELSAKTQA 766
                L C    P  RP+   + + L    QA
Sbjct: 267 -YQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 297

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 19/189 (10%)

Query: 149 MSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVN 208
           ++      L   + T  +  +   L  +  L      +       +    NL+ +  + N
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 72

Query: 209 QLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 268
           QL+   PL          +  +       ++         L + QI +   + N+     
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 269 LLTKLQYLFLYRNNFSGPI-------------PSEIEKLTSLENLDLSGNQLSGTIPPTL 315
           L      +                           +  LT+LE LD+S N++S      L
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVL 190

Query: 316 WNLTNLLSL 324
             LTNL SL
Sbjct: 191 AKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 22/199 (11%)

Query: 477 VGEISPDWGECRNLSNLQLDRNRISGGIP-AELGNLTRLGVLSLDSNELTGKIPTDLGKL 535
           + +I  D           L +  ++  +   +L  +T L    L    + G     +  L
Sbjct: 8   INQIFTDTA-LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYL 61

Query: 536 VKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND 595
             L  +N SNN LT   P           ++ +       +          L  N   + 
Sbjct: 62  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 121

Query: 596 LSGEIPSNLGNLFVLQYMLDLSSN-------------SLSGTIPQELGKLTSLEILNLSR 642
              +  +NL  L +    +   S              S   T  + L  LT+LE L++S 
Sbjct: 122 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS 181

Query: 643 NQLSGRIPASLSSMISLRS 661
           N++S    + L+ + +L S
Sbjct: 182 NKVSD--ISVLAKLTNLES 198

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 21/190 (11%)

Query: 125 LSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
           L+  +   L     +  +   D+  ++ LQ   L   S  G     +  L NL  ++   
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 71

Query: 184 NALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243
           N L    P +         +          L    +            +    +   NL 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 244 GNWTELESLQIQNNSFMGNI-------------PPEIGLLTKLQYLFLYRNNFSGPIPSE 290
                  ++   +                       +  LT L+ L +  N  S    S 
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189

Query: 291 IEKLTSLENL 300
           + KLT+LE+L
Sbjct: 190 LAKLTNLESL 199

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E+       +K D++S GV+  E ++G+ P     + + +   K +       P      
Sbjct: 174 EMIEGRMHDEKVDLWSLGVLCYEFLVGKPP---FEANTYQETYKRISRVEFTFPDFVTEG 230

Query: 731 AVVLTINVALACTSTTPDTRPSMR 754
           A     ++        P  RP +R
Sbjct: 231 A----RDLISRLLKHNPSQRPMLR 250

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTI 736
           +  +  DV++FG+  LE+    +P       +     + V     P    ++A   V   
Sbjct: 188 KYDESVDVYAFGMCMLEMATSEYP--YSECQNAAQIYRRVTSGVKPASFDKVAIPEV--K 243

Query: 737 NVALACTSTTPDTRPSMR 754
            +   C     D R S++
Sbjct: 244 EIIEGCIRQNKDERYSIK 261

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVL 734
           T   +   D + FGV   E+        +  + S  L   D   +RLP P     +    
Sbjct: 188 TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDI--- 244

Query: 735 TINVALACTSTTPDTRPSMRFVAQEL 760
             NV + C +  P+ RP+   +   L
Sbjct: 245 -YNVMVQCWAHKPEDRPTFVALRDFL 269

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 16/150 (10%), Positives = 30/150 (20%), Gaps = 3/150 (2%)

Query: 295 TSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-GSMASLVAFDVNTN 353
                L  + +         L    NL  L + +      +       +  L    +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 354 QLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC 413
            L    P+              + N   S+     +       V   N          L 
Sbjct: 67  GLRFVAPDAFHF-TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 414 SGFALEELTVNGNNFTGSLPACLRNCSNLN 443
                    V            L +  N +
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 3/142 (2%)

Query: 516 VLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTG 574
            L    +         L     L  L + N      +       L EL  L +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 575 DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTS 634
             P       +L  LNLS N L   +         LQ ++   +        + L +   
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

Query: 635 LEILNLSRNQLSGRIPASLSSM 656
             +  +   +L       L+ M
Sbjct: 130 EGLGGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 4/143 (2%)

Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK-LTSLENLDLSGN 305
                L+   +  + +    +     L  L++        +     + L  L NL +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 306 QLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH-GELPENIS 364
            L    P        L  L   S N   ++  +     SL    ++ N LH       + 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLN-LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 365 RLVKLNKFSVFTNNFSGSIPGDF 387
           R  +     V          G  
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPL 148

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 10/92 (10%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
              +    + + D+ + G V +  + G  P + + + + +   + + +++   P  +L  
Sbjct: 183 NTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCA 242

Query: 731 AVVLTI-NVALACTSTTPDTRPSMRFVAQELS 761
                         +   D  P   ++    S
Sbjct: 243 GFPEEFYKYMHYARNLAFDATPDYDYLQGLFS 274

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 506 AELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYL 565
           A+  N  R   L L   ++   I      L +   ++ S+N +          L  L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 566 DLSNNKLTGDVPQELGRFDKLLSLNLSH---NDLSGEIPSNLGNLFVLQYMLDLSSNSLS 622
            ++NN++             L  L L++    +L    P           +L     +  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 623 GTIPQELGKLTSLEILNLSR 642
                 + K+  + +L+  +
Sbjct: 129 HYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 7/154 (4%)

Query: 521 SNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
           + EL  +        V+   L+L    +   I    + L +   +D S+N++        
Sbjct: 4   TAELIEQAAQYTN-AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP- 60

Query: 581 GRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNL 640
               +L +L +++N +          L  L  ++  +++ +       L  L SL  L +
Sbjct: 61  -LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 641 S---RNQLSGRIPASLSSMISLRSVDFSDNELTE 671
                          +  +  +R +DF   +L E
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 153

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN 329
             + + L L        I +    L   + +D S N++          L  L +L + +N
Sbjct: 17  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 330 NLSGTIPPEIGSMASLVAFDVNTNQLH 356
            +         ++  L    +  N L 
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 8/140 (5%)

Query: 47  SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
           +++++      L L   ++     +   T      +D S N++  L     F  L +L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKT 67

Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
           L +  N+           L +L +L L  N        D  +            +     
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 167 P----SSLGQLKNLQHLDLR 182
                  + ++  ++ LD +
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 14/109 (12%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTI 736
            V+   D++S G +   ++ G +P     + + +  ++++++           E  +  +
Sbjct: 179 VVSTATDMWSLGTLVYVLLSGINP---FLAETNQQIIENIMNAEYTFDEEAFKEISIEAM 235

Query: 737 NVALACTSTTPDTRPSMRFVAQELSAKTQAYLPEPLDTMRISKLRSLQK 785
           +           +R +    A E  A    +L + ++ +    +R+L+ 
Sbjct: 236 DFVDRLLVKERKSRMT----ASE--ALQHPWLKQKIERVSTKVIRTLKH 278

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
           + S   LD   +      +L       VL+  S+ +   +      + +L +LNLSNN L
Sbjct: 21  DGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRL 77

Query: 549 TG--EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGN 606
               ++   +     L  L+LS N+L  +   +  +  KL  L L  N LS         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 607 LFVLQYML 614
           +  ++   
Sbjct: 138 ISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 216 LSLSNLSKLNDLGLSDNFLSGEISANLI-------GNWTELESLQIQNN--SFMGNIPPE 266
           L L  L    DL   +  +     +++         N  EL SL + NN    + ++   
Sbjct: 27  LDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI 86

Query: 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSL 324
           +     L+ L L  N        +  K   LE L L GN LS T       ++ +   
Sbjct: 87  VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 542 NLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP 601
            L    +  ++   +S   + +   L    L  D   +L   +  + LN   + ++  + 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRSD--PDLVAQNIDVVLNRRSS-MAATLR 58

Query: 602 SNLGNLFVLQYMLDLSSNSLSGT--IPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
               N+  L   L+LS+N L     +   + K  +L+ILNLS N+L           + L
Sbjct: 59  IIEENIPELLS-LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 660 RSVDFSDNELTEL 672
             +    N L++ 
Sbjct: 118 EELWLDGNSLSDT 130

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 31/147 (21%), Positives = 47/147 (31%), Gaps = 26/147 (17%)

Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELA 563
           +   +         +LD   L  +   DL        LN  ++     +     N+ EL 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELL 68

Query: 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSG 623
            L+LSNN+L                          ++ S +     L+  L+LS N L  
Sbjct: 69  SLNLSNNRLYRL----------------------DDMSSIVQKAPNLKI-LNLSGNELKS 105

Query: 624 TIPQELGKLTSLEILNLSRNQLSGRIP 650
               +  K   LE L L  N LS    
Sbjct: 106 ERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 20/138 (14%)

Query: 661 SVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQR 720
           +  +   E+       +   K DV+S G+  +E+   + P   + ++          ++ 
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQNES 231

Query: 721 LPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR------FVAQE--------LSAKTQA 766
               +G  +E      N   +C    P  RP+        FV +E        L  +T+ 
Sbjct: 232 PALQSGHWSEYF---RNFVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKD 288

Query: 767 YLPEPLDTMRISKLRSLQ 784
            + E LD ++  K++ + 
Sbjct: 289 AVRE-LDNLQYRKMKKIL 305

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVM-MGRHPGELITSLSGELFLKDVLDQRLPPPTGQLA 729
           E       T K DV+S+G++  E+  +G +P   I       F K + +           
Sbjct: 236 ESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD--ANFYKLIQNGFKMDQPFYAT 293

Query: 730 EAVVLTINVALACTSTTPDTRPSMRFVAQELSAK 763
           E +     +  +C +     RPS   +   L  +
Sbjct: 294 EEI---YIIMQSCWAFDSRKRPSFPNLTSFLGCQ 324

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E+        K D++S G++A+E++ G  P      L     +       L  P    A 
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAI 245

Query: 731 AVVLTINVALACTSTTPDTRPSMR 754
                 +    C     + R S +
Sbjct: 246 F----RDFLNRCLDMDVEKRGSAK 265

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHP 700
           E       + + D++S G+  +E+ +GR+P
Sbjct: 173 ERLQGTHYSVQSDIWSMGLSLVEMAVGRYP 202

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E A    V  + DV+S G V  EV+ G  P    T  S        + +   PP+ +   
Sbjct: 184 EQARGDSVDARSDVYSLGCVLYEVLTGEPP---FTGDSPVSVAYQHVREDPIPPSARHEG 240

Query: 731 AVVLTINVALACTSTTPDTRP-SMRFVAQEL 760
                  V L   +  P+ R  +   +  +L
Sbjct: 241 LSADLDAVVLKALAKNPENRYQTAAEMRADL 271

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E+A    V    D++S GV++  ++ G  P       + +  L++V            + 
Sbjct: 195 EVAEGKPVGYYTDMWSVGVLSYILLSGLSP---FGGENDDETLRNVKSCDWNMDDSAFSG 251

Query: 731 AVVLTINVALACTSTTPDTRPSMR 754
                 +         P+TR ++ 
Sbjct: 252 ISEDGKDFIRKLLLADPNTRMTIH 275

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
            +  DV+S G+V   ++ G  P +  +    E          L P     +      + +
Sbjct: 184 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP----LAL 239

Query: 739 ALACTSTTPDTRPSMR 754
                   P  R ++ 
Sbjct: 240 LHKILVENPSARITIP 255

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           EL          D+++ G +  +++ G  P     + +  L  + ++      P     +
Sbjct: 180 ELLTEKSACKSSDLWALGCIIYQLVAGLPP---FRAGNEYLIFQKIIKLEYDFPEKFFPK 236

Query: 731 AVVLTINVALACTSTTPDTRPSMRFVAQELSAKTQAYL 768
           A     ++           R     +      K   + 
Sbjct: 237 A----RDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 270

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
             + D++S GV+   ++ G  P          L L+ ++       + +  +      ++
Sbjct: 193 GKEVDMWSTGVIMYTLLAGSPP---FWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDL 249

Query: 739 ALACTSTTPDTRPSMR 754
                   P  R +  
Sbjct: 250 VSRFLVVQPQKRYTAE 265

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAE 730
           E+     +  + D++S GV+   ++ G  P       + +  L +V            + 
Sbjct: 186 EIVNYEPLGLEADMWSIGVITYILLSGASP---FLGDTKQETLANVSAVNYEFEDEYFSN 242

Query: 731 AVVLTINVALACTSTTPDTRPSMR 754
              L  +         P  R +++
Sbjct: 243 TSALAKDFIRRLLVKDPKKRMTIQ 266

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 149 MSNLQLVELFNNSFTGQIP------SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY 202
             ++   E       G IP      ++L  LK  +HL L  N +       L    NL  
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRI 74

Query: 203 L 203
           L
Sbjct: 75  L 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	785
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.96
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.89
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.85
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.84
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	98.83
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.83
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.81
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.8
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.79
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.73
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	98.69
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	98.68
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	98.68
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.67
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.64
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	98.63
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	98.62
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	98.61
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	98.56
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	98.54
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.54
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	98.23
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.19
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	98.16
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	98.09
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.09
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.07
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	98.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	97.98
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	97.95
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.95
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	97.91
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	97.89
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	97.85
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	97.84
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	97.83
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	97.79
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	97.78
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	97.77
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	97.75
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	97.69
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	97.61
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	97.61
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	97.51
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	97.49
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	97.49
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	97.47
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	97.46
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	97.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.36
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	97.34
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	97.33
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	97.32
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	97.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.25
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	97.22
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	97.15
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	96.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.34
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	96.15

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.5e-27  Score=249.38  Aligned_cols=324  Identities=25%  Similarity=0.316  Sum_probs=166.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931           26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  105 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~  105 (785)
                      ..+.+|++|+++++.|+.++  .+..+++|++|++++|.+++..  .+.++++|++|++++|.+.+ ++.  +..+++|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~-i~~--l~~l~~L~  113 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-ITP--LANLTNLT  113 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             HHhCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccc-ccc--cccccccc
Confidence            34556677777776666553  4556667777777777666543  26666777777777776663 332  36667777


Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCc-------------------CCCCCCCCCEEEcccCcccccC
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG-------------------DIGSMSNLQLVELFNNSFTGQI  166 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------------------~l~~l~~L~~L~L~~n~~~~~~  166 (785)
                      .|+++++.+++..+  ......+.......|.+....+.                   .+...+.........|...  .
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  189 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--D  189 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--C
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--c
Confidence            77776666654322  23334555555554444322211                   1222333333333333222  2


Q ss_pred             CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC
Q 003931          167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW  246 (785)
Q Consensus       167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  246 (785)
                      ...+..+++++.+++++|.+++..|  +..+++|++|++++|.++..  ..+..+++|+.|++++|.+++ +++  ++.+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--~~~~  262 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--LSGL  262 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTC
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-CCc--cccc
Confidence            2334455555555555555554322  23445555555555555432  234555555555555555552 221  4455


Q ss_pred             CCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931          247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL  326 (785)
Q Consensus       247 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  326 (785)
                      ++|++|+++++.+.+..  .+..++.++.+.+..|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|++
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L  336 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFF  336 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEEC
T ss_pred             ccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEEC
Confidence            55555555555554322  244555555555555555432  23455555555555555555432  2455555555555


Q ss_pred             ccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCc
Q 003931          327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTN  377 (785)
Q Consensus       327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n  377 (785)
                      ++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       337 ~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            5555542 22 35555555555555555554332  444444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1e-28  Score=254.96  Aligned_cols=247  Identities=29%  Similarity=0.441  Sum_probs=114.3

Q ss_pred             CcEEECCCCCCcc--cCCccccCCCCCcEEEcCC-CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931          104 LEYLNLTENQFQG--KLSPNVSKLSNLIDLRLAT-NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD  180 (785)
Q Consensus       104 L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  180 (785)
                      ++.|+|+++.+.+  .+|..++++++|++|+|++ |.++|.+|..|+++++|++|++++|.+.+..+..+..+.+|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            3344444444333  2334444444444444443 344444444444444444444444444444444444444444444


Q ss_pred             cccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCC-CEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931          181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKL-NDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF  259 (785)
Q Consensus       181 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  259 (785)
                      +++|.+.+.+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+.. ++.+. ...++++++..
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNML  209 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEE
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccc-ccccccccccc
Confidence            44444444444444444444444444444444444444444333 44444444444443332 33332 22445555555


Q ss_pred             cccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC
Q 003931          260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI  339 (785)
Q Consensus       260 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  339 (785)
                      .+.+|..+..++.++.+++++|.+.+.+| .++.+++|+.|++++|+++|.+|..++++++|++|+|++|+++|.+|. +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            44455555555555555555555544332 344455555555555555555555555555555555555555544442 3


Q ss_pred             CCCCCCCEEEccCCc
Q 003931          340 GSMASLVAFDVNTNQ  354 (785)
Q Consensus       340 ~~l~~L~~L~l~~n~  354 (785)
                      +.+++|+.+++++|+
T Consensus       288 ~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccCCCCCHHHhCCCc
Confidence            444455555555444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.2e-27  Score=246.95  Aligned_cols=249  Identities=27%  Similarity=0.481  Sum_probs=140.2

Q ss_pred             CCCEEEeecCcCcc--cCCccCcCCCCCcEEECcC-ccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEE
Q 003931          248 ELESLQIQNNSFMG--NIPPEIGLLTKLQYLFLYR-NNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSL  324 (785)
Q Consensus       248 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  324 (785)
                      +++.|+|+++.+.+  .+|.+++++++|++|+|++ |+++|.+|.+|+++++|++|+|++|++.+..+..+..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46667777776665  3566666667777777765 56666666666666666666666666666666666666666666


Q ss_pred             EcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccc
Q 003931          325 QLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF  404 (785)
Q Consensus       325 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  404 (785)
                      ++++|.+.+.+|..++.++.++.+++++|.+.+.+|..+..+..                        .++.+++++|++
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~------------------------l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK------------------------LFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT------------------------TCCEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccc------------------------cccccccccccc
Confidence            66666666666666666666666666666555555544443333                        334455555555


Q ss_pred             eecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccch
Q 003931          405 SGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDW  484 (785)
Q Consensus       405 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  484 (785)
                      ++..|..+.... ...++++.+...+.+|..+..+++++.+++++|.+.+.++ .++.+++|+.|++++|+++|.+|..+
T Consensus       187 ~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHH
Confidence            555444443332 2245555555555555555555555555555555544333 34444555555555555555555555


Q ss_pred             hcccccceeccccceeeeccCcchhccccCCeeecccCc
Q 003931          485 GECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNE  523 (785)
Q Consensus       485 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~  523 (785)
                      +.+++|++|+|++|+++|.+|. ++.+++|+.+++++|+
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            5555555555555555554442 3444445455554444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.2e-25  Score=239.59  Aligned_cols=191  Identities=24%  Similarity=0.342  Sum_probs=93.7

Q ss_pred             CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931          267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV  346 (785)
Q Consensus       267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  346 (785)
                      +..+++++.+++++|.+++..|  +...++|+.|++++|.+++.  +.+..+++|+.|++++|.+++..  .++.+++|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~  266 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLT  266 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCC
Confidence            3444555555555555544322  23345555555555555432  23445555555555555554332  244455555


Q ss_pred             EEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCC
Q 003931          347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGN  426 (785)
Q Consensus       347 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  426 (785)
                      .++++++++.+..+  +..+..++.+.+..|.+++.                           ..+..+..++.+++++|
T Consensus       267 ~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~---------------------------~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         267 ELKLGANQISNISP--LAGLTALTNLELNENQLEDI---------------------------SPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC---------------------------GGGGGCTTCSEEECCSS
T ss_pred             EeeccCcccCCCCc--cccccccccccccccccccc---------------------------cccchhcccCeEECCCC
Confidence            55555555443211  23333333333333333221                           12333344555555555


Q ss_pred             CCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccc
Q 003931          427 NFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRN  498 (785)
Q Consensus       427 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  498 (785)
                      ++++..  .+..+++|++|++++|++++.  ..++.+++|++|++++|++++..|  +..+++|+.|++++|
T Consensus       318 ~l~~l~--~l~~l~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         318 NISDIS--PVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCc--ccccCCCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            554432  245555666666666655532  135556666666666666665433  566666666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.2e-24  Score=223.18  Aligned_cols=279  Identities=25%  Similarity=0.302  Sum_probs=171.9

Q ss_pred             CCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECC
Q 003931            6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLS   85 (785)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls   85 (785)
                      ..+.++=+++.++.+ |..+.  +++++|+|++|+|+.++..+|.++++|++|++++|.+..+.|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~l-P~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCcc-CCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            346677777777754 33342  578888888888888887788888888888888888887778888888888888888


Q ss_pred             CCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCccc--ccCCcCCCCCCCCCEEEcccCccc
Q 003931           86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS--GPIPGDIGSMSNLQLVELFNNSFT  163 (785)
Q Consensus        86 ~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~L~~n~~~  163 (785)
                      +|+++ .+|...   ...++.|+++.|.+.+..+..+.....+..++...|...  ...+..+..+++|+++++++|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            88887 566543   456778888888887766666777777777777766433  223344555666666666666655


Q ss_pred             ccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcccc
Q 003931          164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI  243 (785)
Q Consensus       164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  243 (785)
                      . +|..+  +++|++|++++|......+..+..++.+++|++++|.+++..+..+.++                      
T Consensus       164 ~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l----------------------  218 (305)
T d1xkua_         164 T-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT----------------------  218 (305)
T ss_dssp             S-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS----------------------
T ss_pred             c-cCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc----------------------
Confidence            2 23222  3455555555555555555555555555555555555554444444444                      


Q ss_pred             CCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChh------ccCCCCCCEEECcCCccc--ccCCccC
Q 003931          244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE------IEKLTSLENLDLSGNQLS--GTIPPTL  315 (785)
Q Consensus       244 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~------~~~l~~L~~L~Ls~n~l~--~~~p~~l  315 (785)
                         ++|++|+|++|+++ .+|.++..+++|++|++++|+++......      +....+|+.|+|++|++.  ...|.+|
T Consensus       219 ---~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         219 ---PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             ---TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             ---ccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence               44555555555444 23444555555555555555554322222      234566777777777664  2344444


Q ss_pred             cCCCC
Q 003931          316 WNLTN  320 (785)
Q Consensus       316 ~~l~~  320 (785)
                      ..+..
T Consensus       295 ~~~~~  299 (305)
T d1xkua_         295 RCVYV  299 (305)
T ss_dssp             TTCCC
T ss_pred             ccccc
Confidence            44433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.5e-24  Score=219.82  Aligned_cols=266  Identities=22%  Similarity=0.251  Sum_probs=169.8

Q ss_pred             ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931           79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF  158 (785)
Q Consensus        79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  158 (785)
                      ++.++.++..++ .+|..++   +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            445555555555 4554431   345556666665554444455555666666666666555555555666666666666


Q ss_pred             cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc--cCCchhccCCCCCCEEEccCCCCcc
Q 003931          159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS--GGLPLSLSNLSKLNDLGLSDNFLSG  236 (785)
Q Consensus       159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~L~~n~l~~  236 (785)
                      +|+++. +|..+  ...++.|++.+|.+.+..+..+.....++.+....|...  ...+..+..+++|+.+++++|.+. 
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            665553 23222  235566666666665544444555555556665555432  233455667777888888888776 


Q ss_pred             ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCc
Q 003931          237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW  316 (785)
Q Consensus       237 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  316 (785)
                      .++..   .+++|+.|++++|...+..+..+..++.+++|++++|.+++..+.++.++++|++|+|++|+++ .+|.++.
T Consensus       164 ~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence            45543   3567888888888888777778888888888888888888777788888888888888888887 4577788


Q ss_pred             CCCCCCEEEcccccccCCCCCCC------CCCCCCCEEEccCCcCc
Q 003931          317 NLTNLLSLQLFSNNLSGTIPPEI------GSMASLVAFDVNTNQLH  356 (785)
Q Consensus       317 ~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~l~~n~l~  356 (785)
                      .+++|++|++++|+++......|      ....+|+.+++++|.+.
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            88888888888888875433332      23456666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-24  Score=218.38  Aligned_cols=225  Identities=24%  Similarity=0.193  Sum_probs=149.8

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC-
Q 003931            9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN-   87 (785)
Q Consensus         9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-   87 (785)
                      .++.++++++.+ |..+.  +.+++|+|++|+|+.+++.+|.++++|++|++++|.+..+.+..+..+..++.++...+ 
T Consensus        15 ~v~c~~~~L~~i-P~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAV-PVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSC-CTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCcc-CCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            345566666633 32222  45677777777777777777777777777777777777777777777777777766533 


Q ss_pred             CCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCC
Q 003931           88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP  167 (785)
Q Consensus        88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~  167 (785)
                      .++ .++...|.++++|++|++++|.+....+..+..+.+|+.+++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus        92 ~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            444 5555556777777777777777666666666666777777777777766555666666677777777777666666


Q ss_pred             ccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccc
Q 003931          168 SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE  237 (785)
Q Consensus       168 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  237 (785)
                      .+|.++++|+++++++|.+++..|..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+...
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            6666677777777777776666666666666666666666666666666666666666666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=217.53  Aligned_cols=223  Identities=21%  Similarity=0.224  Sum_probs=125.6

Q ss_pred             EECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc-cC
Q 003931           82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF-NN  160 (785)
Q Consensus        82 L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~-~n  160 (785)
                      ++.++++++ .+|..++   +.+++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..++.+... .+
T Consensus        16 v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            344444554 4554331   345556666666555555555555556666665555555555555555555555543 33


Q ss_pred             cccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCc
Q 003931          161 SFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISA  240 (785)
Q Consensus       161 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  240 (785)
                      .+....+..|+++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.++ .+++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccch
Confidence            444444555556666666666666555444455555555666666666655544555555556666666666655 3444


Q ss_pred             cccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccc
Q 003931          241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG  309 (785)
Q Consensus       241 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  309 (785)
                      ..+.++++|+.+++++|++.+..|..|..+++|++|++++|.+.+..+.+|+.+++|++|++++|++..
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            445556666666666666665556666666666666666666665555556666666666666665553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-21  Score=192.51  Aligned_cols=197  Identities=28%  Similarity=0.262  Sum_probs=96.0

Q ss_pred             CCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEEC
Q 003931            5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL   84 (785)
Q Consensus         5 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L   84 (785)
                      ..+.+++.++++++.+ |..+.  +++++|+|++|+|+.+.+++|.++++|++|+|++|.++.+.  .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            3444455555555533 22221  34555555555555555555555555555555555555332  2344555555555


Q ss_pred             CCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc
Q 003931           85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG  164 (785)
Q Consensus        85 s~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~  164 (785)
                      ++|+++ .++. .|.++++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++++++++|.+++
T Consensus        85 s~N~l~-~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccc-cccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            555554 2222 23455555555555555554444444555555555555555544444444444555555555555444


Q ss_pred             cCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccc
Q 003931          165 QIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ  209 (785)
Q Consensus       165 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  209 (785)
                      ..+..|..+++|++|+|++|+++ .+|+.+..+++|+.|++++|.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            44444444444444444444444 334444444444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-21  Score=192.35  Aligned_cols=200  Identities=24%  Similarity=0.150  Sum_probs=106.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931           26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE  105 (785)
Q Consensus        26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~  105 (785)
                      .+...+..++.+++.++.++.+ +.  +++++|+|++|.++++.+..|.++++|++|++++|.++ .+|.  |+.+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCC
T ss_pred             cccCCCeEEEccCCCCCeeCcC-cC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccc
Confidence            4455566667777776665432 22  35666666666666655566666666666666666665 3443  34566666


Q ss_pred             EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931          106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA  185 (785)
Q Consensus       106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  185 (785)
                      +|++++|+++. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|+
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            66666666552 34445555555555555555554444445555555555555555554444444445555555555555


Q ss_pred             CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCC
Q 003931          186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF  233 (785)
Q Consensus       186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~  233 (785)
                      +++..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            54444444444444444444444444 333333344444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=9.2e-17  Score=167.67  Aligned_cols=299  Identities=24%  Similarity=0.238  Sum_probs=140.9

Q ss_pred             CCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECC
Q 003931            6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLS   85 (785)
Q Consensus         6 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls   85 (785)
                      ++++|+|+++.++.. |+   ..++|++|++++|+|+.++.    ...+|+.|++++|.++.+. . +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~l-p~---~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~-~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALS-D-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC-S-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCCC-CC---CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhh-h-h--cccccccccc
Confidence            456666666666643 32   23566666666666665531    1345666666666655321 1 1  1246666666


Q ss_pred             CCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931           86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ  165 (785)
Q Consensus        86 ~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~  165 (785)
                      +|.+. .+|.  +..+++|++|+++++.+.....    ....+..+.+..+...  ....+..++.++.+++.+|.....
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccc-cccc--hhhhccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            66665 4553  2456666666666665542211    2234555555544433  223455556666666666555422


Q ss_pred             CCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCC
Q 003931          166 IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGN  245 (785)
Q Consensus       166 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  245 (785)
                       +.   .....+.+....+.+. .+ ..+..++.|+.+++++|.... .+   ....++..+.+.++.+.. .+.    .
T Consensus       178 -~~---~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~-~~~----~  242 (353)
T d1jl5a_         178 -PD---LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD-LPE----L  242 (353)
T ss_dssp             -CC---CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC-CCC----C
T ss_pred             -cc---cccccccccccccccc-cc-ccccccccccccccccccccc-cc---cccccccccccccccccc-ccc----c
Confidence             11   1122344444444332 11 223445555555555554432 11   122345555555555431 111    1


Q ss_pred             CCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEE
Q 003931          246 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ  325 (785)
Q Consensus       246 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  325 (785)
                      ...+...++..+.+.+...    -.......++..+.+.+.    ...+++|++|++++|+++ .+|.   .+++|+.|+
T Consensus       243 ~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~  310 (353)
T d1jl5a_         243 PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLI  310 (353)
T ss_dssp             CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             ccccccccccccccccccc----ccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEE
Confidence            2334444444443332100    012233444444444321    122455666666666555 3342   234555666


Q ss_pred             cccccccCCCCCCCCCCCCCCEEEccCCcCc
Q 003931          326 LFSNNLSGTIPPEIGSMASLVAFDVNTNQLH  356 (785)
Q Consensus       326 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  356 (785)
                      +++|+++ .+|.   .+++|++|++++|+++
T Consensus       311 L~~N~L~-~l~~---~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         311 ASFNHLA-EVPE---LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCcCC-cccc---ccCCCCEEECcCCcCC
Confidence            6666555 3332   1334555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=9.4e-16  Score=159.83  Aligned_cols=300  Identities=25%  Similarity=0.251  Sum_probs=195.3

Q ss_pred             CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEE
Q 003931           29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN  108 (785)
Q Consensus        29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~  108 (785)
                      .+++.|||+++.++.++.    ..++|++|++++|.++.. |..+   .+|+.|++++|.++ .++. +   .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~l-p~~~---~~L~~L~l~~n~l~-~l~~-l---p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL-PELP---QSLKSLLVDNNNLK-ALSD-L---PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSC-CCCC---TTCCEEECCSSCCS-CCCS-C---CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCccc-ccch---hhhhhhhhhhcccc-hhhh-h---cccccccc
Confidence            468899999999887762    357899999999998844 5443   57888899999887 4553 1   24689999


Q ss_pred             CCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931          109 LTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY  188 (785)
Q Consensus       109 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  188 (785)
                      +++|.+... | .+..+++|+.|+++++.+... +   .....+..+.+..+...  .+..+..++.++.+++++|....
T Consensus       105 L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~-~---~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKL-P---DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccc-c-chhhhccceeecccccccccc-c---cccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            999988843 4 367788999999998887743 2   23456777877776554  33457778888889988887753


Q ss_pred             cCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCc
Q 003931          189 TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG  268 (785)
Q Consensus       189 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  268 (785)
                      . +..   ....+.+....+.+. .+ ..+..++.|+.+++++|... .++.    ...++..+.+.++.+... +   .
T Consensus       177 ~-~~~---~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~-~---~  241 (353)
T d1jl5a_         177 L-PDL---PLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-P---E  241 (353)
T ss_dssp             C-CCC---CTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-C---C
T ss_pred             c-ccc---ccccccccccccccc-cc-cccccccccccccccccccc-cccc----cccccccccccccccccc-c---c
Confidence            2 221   223445555555444 22 23567788888888888765 3332    345677788887776532 2   2


Q ss_pred             CCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEE
Q 003931          269 LLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAF  348 (785)
Q Consensus       269 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  348 (785)
                      ....+....+..+.+.+.. .   -.......++..+.+.+.    ...+++|++|++++|+++ .+|.   .+++|+.|
T Consensus       242 ~~~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L  309 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERL  309 (353)
T ss_dssp             CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             ccccccccccccccccccc-c---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEE
Confidence            2455667777666654321 1   113445667777766633    234577888888888887 4554   35677788


Q ss_pred             EccCCcCccccCccccccCCCcEEEecCcccc
Q 003931          349 DVNTNQLHGELPENISRLVKLNKFSVFTNNFS  380 (785)
Q Consensus       349 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~  380 (785)
                      ++++|+++ .+|..   +.+|++|++++|+++
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            88888776 34432   234555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.9e-18  Score=168.69  Aligned_cols=213  Identities=17%  Similarity=0.069  Sum_probs=105.0

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC-
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT-  110 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls-  110 (785)
                      ++++.++..++.++...+   +++++|++++|.++.+.+.+|.++++|++|++++|.+...++...|.+++.++++.+. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            455555555555543322   3456666666666655555566666666666666665544555555666666666554 


Q ss_pred             CCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccCCccccCCC-CCCEEEcccCcCcc
Q 003931          111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLK-NLQHLDLRMNALNY  188 (785)
Q Consensus       111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~  188 (785)
                      .|.+....+..|.++++|+.+++++|.+....+ ..+..++.+..+...++.+....+..+..++ .++.|++++|.++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            345555555556666666666666666553222 1122334444444444445444444444432 45555555555553


Q ss_pred             cCCccccCCcccCee-eccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCC
Q 003931          189 TIPPELGLCTNLSYL-ALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTEL  249 (785)
Q Consensus       189 ~~~~~~~~l~~L~~L-~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  249 (785)
                      ..+..+ ..++++.+ .+++|+++...+..|.++++|++|++++|+++ .+|...+.++++|
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L  227 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL  227 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccc
Confidence            332222 22332222 34444444333333444455555555555444 3333333333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.2e-17  Score=162.28  Aligned_cols=190  Identities=26%  Similarity=0.291  Sum_probs=96.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931           25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL  104 (785)
Q Consensus        25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L  104 (785)
                      +..+.+|++|++++|.|+.+.  .+..+++|++|++++|.+++..+  +.++++|+++++++|.++ .++.  |.++++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~~--l~~l~~L  109 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSI  109 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTC
T ss_pred             HHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cccc--ccccccc
Confidence            344555666666666555542  35555566666665555554322  455555555555555554 2321  3445555


Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN  184 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  184 (785)
                      ++++++++...+.  ..+.                        ..+.++.+.++++.+...  ..+...++|++|++++|
T Consensus       110 ~~l~l~~~~~~~~--~~~~------------------------~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLA------------------------GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNA  161 (227)
T ss_dssp             CEEECTTSCCCCC--GGGT------------------------TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccc--chhc------------------------cccchhhhhchhhhhchh--hhhcccccccccccccc
Confidence            5555555444321  2233                        344444444444444322  12344455555555555


Q ss_pred             cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeec
Q 003931          185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN  256 (785)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  256 (785)
                      .+...  ..++.+++|+.|++++|++++. + .++++++|++|++++|+++ .+++  ++++++|+.|++++
T Consensus       162 ~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         162 QVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEE
T ss_pred             ccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEeeC
Confidence            54322  2245555555555555555532 1 2556666666666666665 3443  56666777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2e-17  Score=160.57  Aligned_cols=188  Identities=22%  Similarity=0.296  Sum_probs=144.7

Q ss_pred             CCCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccE
Q 003931            2 GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTY   81 (785)
Q Consensus         2 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   81 (785)
                      +++++|++|++.+|.|+.. + .+.++++|++|++++|.++.+.  .|..+++++++++++|.++.+  ..+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence            3577899999999999865 3 4899999999999999998765  489999999999999998754  45889999999


Q ss_pred             EECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCc
Q 003931           82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS  161 (785)
Q Consensus        82 L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  161 (785)
                      ++++++...+ ++.  +...+.++.+.++++.+...  ..+..+++|+.|++++|.+.+.  ..++++++|++|++++|.
T Consensus       112 l~l~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         112 LDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             cccccccccc-cch--hccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            9999998873 332  47789999999999887643  3467778888888888887643  236777788888888777


Q ss_pred             ccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecc
Q 003931          162 FTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA  206 (785)
Q Consensus       162 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  206 (785)
                      +++. + .++++++|++|++++|+++...  .++++++|++|+++
T Consensus       185 l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         185 ISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             cCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            7643 2 3667777777777777766432  25566666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-17  Score=161.47  Aligned_cols=104  Identities=20%  Similarity=0.348  Sum_probs=47.6

Q ss_pred             cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC-CccccCCCCCCEEEccc
Q 003931          105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI-PSSLGQLKNLQHLDLRM  183 (785)
Q Consensus       105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~  183 (785)
                      ++++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+...+ +.+|..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34455554444 2332221  24555555555555443444555555555555555444322 23344455555554432


Q ss_pred             -CcCcccCCccccCCcccCeeeccccccc
Q 003931          184 -NALNYTIPPELGLCTNLSYLALAVNQLS  211 (785)
Q Consensus       184 -n~l~~~~~~~~~~l~~L~~L~l~~n~i~  211 (785)
                       |.+....+..|..+++|+++++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             3344344444444444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-19  Score=197.63  Aligned_cols=111  Identities=23%  Similarity=0.274  Sum_probs=65.0

Q ss_pred             cccCeeeccccccccCC-chhccCCCCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCccc----CCccCc
Q 003931          198 TNLSYLALAVNQLSGGL-PLSLSNLSKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFMGN----IPPEIG  268 (785)
Q Consensus       198 ~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~  268 (785)
                      ++|+.|+++.|++++.. ...+..++++++|+|++|.++..    +.. ++..+++|++|+|++|.++..    +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            35777888888876532 33345667777777777776521    111 245667777777777766421    111221


Q ss_pred             -CCCCCcEEECcCcccccc----CChhccCCCCCCEEECcCCcccc
Q 003931          269 -LLTKLQYLFLYRNNFSGP----IPSEIEKLTSLENLDLSGNQLSG  309 (785)
Q Consensus       269 -~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~  309 (785)
                       ...+|++|++++|.+++.    ++..+..+++|++|++++|.++.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence             224577777777766532    23445566667777777766653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.3e-16  Score=152.27  Aligned_cols=180  Identities=23%  Similarity=0.281  Sum_probs=138.0

Q ss_pred             EccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCc
Q 003931           11 SVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS   90 (785)
Q Consensus        11 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~   90 (785)
                      .+..+.+++..+.  ..+.+|++|++++|.++.+.  .+..+++|++|++++|.+++..  .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            3445555544332  35678888999988888765  4778889999999999888654  3678888999999999887


Q ss_pred             ccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccc
Q 003931           91 GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL  170 (785)
Q Consensus        91 ~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l  170 (785)
                       .+|.  +..+++|+.|++++|.+..  ...+..+++++.+++++|.+++  +..+..+++|+++++++|.+++..  .+
T Consensus       104 -~l~~--l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l  174 (210)
T d1h6ta2         104 -DLSS--LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PL  174 (210)
T ss_dssp             -CGGG--GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             -cccc--ccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--cc
Confidence             4553  5788899999998888763  3467888889999999888874  335677889999999999887542  37


Q ss_pred             cCCCCCCEEEcccCcCcccCCccccCCcccCeeeccc
Q 003931          171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV  207 (785)
Q Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  207 (785)
                      +++++|++|++++|.++. ++ .+..+++|++|++++
T Consensus       175 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            888999999999998874 33 588888999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=150.14  Aligned_cols=174  Identities=25%  Similarity=0.312  Sum_probs=96.3

Q ss_pred             ccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcc
Q 003931           12 VYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSG   91 (785)
Q Consensus        12 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~   91 (785)
                      ++.+.+++...  ...+.++++|++++|.++.+.  .+..+++|++|++++|.+++..+  +.++++|++|++++|.+. 
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-   97 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-   97 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-
Confidence            44444544322  245566777777777766553  35566667777777766665432  666666666666666655 


Q ss_pred             cCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCcccc
Q 003931           92 LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLG  171 (785)
Q Consensus        92 ~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~  171 (785)
                      .++.  +.+++.|++|++++|.+...  ..+..+++|+.|++++|++.. + ..+..+++|+.|++.+|.+++.  ..++
T Consensus        98 ~~~~--l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~  169 (199)
T d2omxa2          98 DITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLA  169 (199)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGT
T ss_pred             cccc--cccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--cccc
Confidence            3332  45666666666666655532  235556666666666665542 1 2355556666666666655532  1255


Q ss_pred             CCCCCCEEEcccCcCcccCCccccCCcccCe
Q 003931          172 QLKNLQHLDLRMNALNYTIPPELGLCTNLSY  202 (785)
Q Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  202 (785)
                      ++++|++|++++|+++..  +.++.+++|++
T Consensus       170 ~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~  198 (199)
T d2omxa2         170 NLTTLERLDISSNKVSDI--SVLAKLTNLES  198 (199)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             CCCCCCEEECCCCCCCCC--ccccCCCCCCc
Confidence            555555555555555431  12444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4.5e-17  Score=153.19  Aligned_cols=155  Identities=23%  Similarity=0.259  Sum_probs=88.2

Q ss_pred             CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931           77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE  156 (785)
Q Consensus        77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  156 (785)
                      +++++|+|++|.|++.++...|.++++|++|++++|.+....+..|..+++|++|++++|+++...+..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            34555666666665445555556666666666666666666666666666666666666666655566666666666666


Q ss_pred             cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931          157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS  235 (785)
Q Consensus       157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  235 (785)
                      |++|.+++..+.+|..+++|++|++++|.+...... ......++.+.+..+.++...|..+   ..++.++++.|.+.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            666666666666666666666666666666432211 1111234445555555554444332   33334445555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.7e-16  Score=151.44  Aligned_cols=182  Identities=27%  Similarity=0.259  Sum_probs=141.1

Q ss_pred             EEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCC
Q 003931           33 YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN  112 (785)
Q Consensus        33 ~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n  112 (785)
                      ..++..+.++....  ...+.+|+.|++++|.++...  .+..+++|++|++++|++++ ++.  ++.+++|++|++++|
T Consensus        28 ~~~l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSS
T ss_pred             HHHhCcCccCCccC--HHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-ccc--cccCccccccccccc
Confidence            34566666654332  134678899999999887653  47788999999999999884 443  478899999999999


Q ss_pred             CCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCc
Q 003931          113 QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPP  192 (785)
Q Consensus       113 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  192 (785)
                      ++++. + .+..+++|+.|++++|.+...  ..+..+++++.+++++|.++..  ..+..+++|+++++++|.+++.  .
T Consensus       101 ~i~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i--~  172 (210)
T d1h6ta2         101 KVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V  172 (210)
T ss_dssp             CCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G
T ss_pred             ccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc--c
Confidence            98853 2 588899999999999988632  3578889999999999988743  4577888999999999998753  2


Q ss_pred             cccCCcccCeeeccccccccCCchhccCCCCCCEEEccC
Q 003931          193 ELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSD  231 (785)
Q Consensus       193 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~  231 (785)
                      .+.++++|+.|++++|++++ ++ .+.++++|++|++++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            47888999999999999875 34 588899999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-19  Score=196.52  Aligned_cols=188  Identities=18%  Similarity=0.125  Sum_probs=92.7

Q ss_pred             CCCCCcEEECcCccccc-----cCChhccCCCCCCEEECcCCcccccC----CccCcCCCCCCEEEcccccccCCCCCC-
Q 003931          269 LLTKLQYLFLYRNNFSG-----PIPSEIEKLTSLENLDLSGNQLSGTI----PPTLWNLTNLLSLQLFSNNLSGTIPPE-  338 (785)
Q Consensus       269 ~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~-  338 (785)
                      ..+.++.+.+.+|.+..     ..+..+.....++.+++++|.+....    ...+...+.++.+++++|.++...... 
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            34556666666665421     11222334456666666666554321    122334555666666666553211000 


Q ss_pred             ----CCCCCCCCEEEccCCcCccccCccc----cccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceec---
Q 003931          339 ----IGSMASLVAFDVNTNQLHGELPENI----SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE---  407 (785)
Q Consensus       339 ----~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~---  407 (785)
                          ......|+.++++++.+.......+    ....                         +|++|++++|++.+.   
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~-------------------------~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-------------------------FLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS-------------------------SCCEEECCSSBCHHHHHH
T ss_pred             hccccccccccccccccccchhhhhhhhccccccccc-------------------------chhhhheeeecccCcccc
Confidence                0122345555555555543322211    2223                         444455555544322   


Q ss_pred             -CCcccc-CCCCCcEEEccCCCCccc----CCccccCCCCCcEEEcccCccccccCccc----C-CCCCCcEEEccCCee
Q 003931          408 -LPHELC-SGFALEELTVNGNNFTGS----LPACLRNCSNLNRVRFDGNQFTGNITKAF----G-VHPRLDFIRLSGNQF  476 (785)
Q Consensus       408 -~~~~~~-~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~-~~~~L~~L~Ls~n~l  476 (785)
                       ++..+. ....|++|++++|.++..    +...+..+++|++|++++|+++......+    . ....|+.|++.+|.+
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence             111221 234567777777776532    33445566778888888887764332222    2 334688888888887


Q ss_pred             eeecc
Q 003931          477 VGEIS  481 (785)
Q Consensus       477 ~~~~~  481 (785)
                      .....
T Consensus       439 ~~~~~  443 (460)
T d1z7xw1         439 SEEME  443 (460)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            65433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.7e-16  Score=147.75  Aligned_cols=162  Identities=20%  Similarity=0.289  Sum_probs=138.7

Q ss_pred             CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      ++.++++|++++|.++...  .+..+++|++|++++|+++.+.  .|.++++|++|++++|.+....  .+.++++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--ccccccccccc
Confidence            4678999999999998642  4788999999999999999875  3999999999999999987553  48899999999


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF  162 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~  162 (785)
                      ++++|.+.. ++  .+.++++|+.|++++|.+...  ..+..+++|++|++++|++++..  .++++++|++|++++|++
T Consensus       112 ~l~~~~~~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQITD-ID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-cc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCC
Confidence            999998873 33  258899999999999998743  46889999999999999998643  488999999999999999


Q ss_pred             cccCCccccCCCCCCEE
Q 003931          163 TGQIPSSLGQLKNLQHL  179 (785)
Q Consensus       163 ~~~~~~~l~~l~~L~~L  179 (785)
                      +.. + .++++++|++|
T Consensus       185 ~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-G-GGGGCTTCSEE
T ss_pred             CCC-c-cccCCCCCCcC
Confidence            853 3 58889999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=3.8e-17  Score=153.66  Aligned_cols=127  Identities=27%  Similarity=0.297  Sum_probs=61.1

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCC-CCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL   86 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~   86 (785)
                      ++++.++++++.++.. +  .+++++|+|++|+|+. +....|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP~~-l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCC-C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3455555555533221 1  1345555555555543 3344455555555555555555544445555555555555555


Q ss_pred             CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcc
Q 003931           87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF  138 (785)
Q Consensus        87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~  138 (785)
                      |+++ .+|..+|.++++|++|+|++|+|++..+.+|..+++|++|+|++|.+
T Consensus        88 N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            5554 34444444455555555555554444444444444444444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.2e-16  Score=158.34  Aligned_cols=213  Identities=20%  Similarity=0.228  Sum_probs=110.4

Q ss_pred             CCCCcEEEcCCCccccc-CCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC-cCccc-CCccccCCcccC
Q 003931          125 LSNLIDLRLATNKFSGP-IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN-ALNYT-IPPELGLCTNLS  201 (785)
Q Consensus       125 l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~  201 (785)
                      ..+|++|+++++.+... +...+..+++|++|++++|.+....+..++++++|++|+++++ .++.. +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666555432 2233455666666666666655545555566666666666664 33311 111123456666


Q ss_pred             eeeccccc-cccC-Cchhcc-CCCCCCEEEccCCC--CccccCccccCCCCCCCEEEeecC-cCcccCCccCcCCCCCcE
Q 003931          202 YLALAVNQ-LSGG-LPLSLS-NLSKLNDLGLSDNF--LSGEISANLIGNWTELESLQIQNN-SFMGNIPPEIGLLTKLQY  275 (785)
Q Consensus       202 ~L~l~~n~-i~~~-~~~~l~-~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  275 (785)
                      +|+++++. ++.. ....+. ..++|+.|+++++.  ++......+..++++|++|++++| .+++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            66666542 3221 112222 23567777776542  322212222345667777777665 355555556666777777


Q ss_pred             EECcCc-cccccCChhccCCCCCCEEECcCCcccc-cCCccCcCCCCCCEEEcccccccCCCCCCCCC
Q 003931          276 LFLYRN-NFSGPIPSEIEKLTSLENLDLSGNQLSG-TIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS  341 (785)
Q Consensus       276 L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  341 (785)
                      |++++| .+++.....++++++|+.|+++++ +++ .++.....+|+|   .+..+.++...++.++.
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence            777774 455544455666777777777766 221 111112234443   34555666555544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-15  Score=153.41  Aligned_cols=200  Identities=23%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             cEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccc
Q 003931          129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV  207 (785)
Q Consensus       129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  207 (785)
                      ..+.++...+.... .......+|++|++++|.+... +...+.++++|++|+++++.++...+..++.+++|++|++++
T Consensus        26 ~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          26 IAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             SEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             eEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            34455444443221 2233456788888888776533 233466777888888887777666666667777777777777


Q ss_pred             c-ccccC-CchhccCCCCCCEEEccCCC-Cccc-cCccccCCCCCCCEEEeecCc--Cccc-CCccCcCCCCCcEEECcC
Q 003931          208 N-QLSGG-LPLSLSNLSKLNDLGLSDNF-LSGE-ISANLIGNWTELESLQIQNNS--FMGN-IPPEIGLLTKLQYLFLYR  280 (785)
Q Consensus       208 n-~i~~~-~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~  280 (785)
                      + .++.. ......++++|++|++++|. ++.. +........+.|+.|+++++.  ++.. +...+..+++|++|++++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            4 34422 12223456777777777653 3221 111111223556666666542  2211 111223455566666655


Q ss_pred             c-cccccCChhccCCCCCCEEECcCC-cccccCCccCcCCCCCCEEEcccc
Q 003931          281 N-NFSGPIPSEIEKLTSLENLDLSGN-QLSGTIPPTLWNLTNLLSLQLFSN  329 (785)
Q Consensus       281 n-~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n  329 (785)
                      | .+++.....+.++++|++|++++| .+++.....++++++|+.|+++++
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4 344444455555566666666553 344443444555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.2e-15  Score=132.80  Aligned_cols=131  Identities=20%  Similarity=0.154  Sum_probs=101.3

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCC
Q 003931           24 QLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK  103 (785)
Q Consensus        24 ~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~  103 (785)
                      .|.++.++|.|+|++|+|+.++ +.+..+++|++|++++|.++..  +.|..+++|++|++++|+++ .++..+|..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            4667778888888888888885 4567788888888888888765  35788888888999988887 567777778888


Q ss_pred             CcEEECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEcc
Q 003931          104 LEYLNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELF  158 (785)
Q Consensus       104 L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~  158 (785)
                      |++|++++|+++.... ..+..+++|++|++++|.++....   ..+..+++|++||..
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9999999988875432 467888889999999998874321   246778888888743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.4e-14  Score=130.91  Aligned_cols=128  Identities=17%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             cCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCC
Q 003931           49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNL  128 (785)
Q Consensus        49 f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  128 (785)
                      |.++..+++|+|++|.|+.+ +..+..+++|++|++++|.++ .++.  |..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccCC--cccCcchhhhhcccccccCCCcccccccccc
Confidence            55556666666666666644 344555666666666666666 3432  4666666666666666665555555566666


Q ss_pred             cEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccC---CccccCCCCCCEEE
Q 003931          129 IDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQI---PSSLGQLKNLQHLD  180 (785)
Q Consensus       129 ~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~---~~~l~~l~~L~~L~  180 (785)
                      +.|++++|+++.... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666666653211 34556666666666666665321   12355666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.2e-13  Score=115.53  Aligned_cols=102  Identities=24%  Similarity=0.183  Sum_probs=58.9

Q ss_pred             cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931            8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN   87 (785)
Q Consensus         8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n   87 (785)
                      |+|++++|+++.. + .+.++++|++|++++|+|+.++ .+|..+++|++|++++|.++..  ..+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~lp-~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCcch-hhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            4566666666633 2 2566666666666666666654 3466666666666666666543  23555666666666666


Q ss_pred             CCcccCCh-hhhcCCCCCcEEECCCCCCc
Q 003931           88 KLSGLIPE-RLFTNLGKLEYLNLTENQFQ  115 (785)
Q Consensus        88 ~i~~~~~~-~~f~~l~~L~~L~Ls~n~i~  115 (785)
                      +++ .++. ..+..+++|++|++++|.++
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            655 2332 23455555666666555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1.4e-14  Score=149.98  Aligned_cols=239  Identities=20%  Similarity=0.173  Sum_probs=155.0

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCC----ccccCCCCCCcEEEccCCCCccc----------CCccCCCCCCccEEECCCCC
Q 003931           23 FQLSSLRKVRYLDLGGNFLETPD----WSKFSSMPSLTHLGLYLNELTLE----------FPSFILTCRNLTYLDLSLNK   88 (785)
Q Consensus        23 ~~~~~l~~L~~L~L~~n~i~~~~----~~~f~~l~~L~~L~L~~n~i~~~----------~~~~~~~l~~L~~L~Ls~n~   88 (785)
                      ..+.....|+.|+|++|.|....    ..++...++|+.++++++.....          +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34566777888888877664322    12356677888888876654321          12335567788888888887


Q ss_pred             CcccCCh---hhhcCCCCCcEEECCCCCCcccCCcc-------------ccCCCCCcEEEcCCCccccc----CCcCCCC
Q 003931           89 LSGLIPE---RLFTNLGKLEYLNLTENQFQGKLSPN-------------VSKLSNLIDLRLATNKFSGP----IPGDIGS  148 (785)
Q Consensus        89 i~~~~~~---~~f~~l~~L~~L~Ls~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~~~~~----~~~~l~~  148 (785)
                      +......   ..+...++|++|++++|.+.......             ....+.|+.+++++|.+...    +...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            7632111   12346778888888888765221111             13456788888888877532    2223456


Q ss_pred             CCCCCEEEcccCccccc-----CCccccCCCCCCEEEcccCcCccc----CCccccCCcccCeeeccccccccCCchh--
Q 003931          149 MSNLQLVELFNNSFTGQ-----IPSSLGQLKNLQHLDLRMNALNYT----IPPELGLCTNLSYLALAVNQLSGGLPLS--  217 (785)
Q Consensus       149 l~~L~~L~L~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~--  217 (785)
                      ++.|++|++++|.+...     +...+..+++|++|++++|.++..    +...+..+++|++|++++|.+++.....  
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            77888888888887632     234567788899999998887532    3345667888999999999887543222  


Q ss_pred             --cc--CCCCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCcc
Q 003931          218 --LS--NLSKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFMG  261 (785)
Q Consensus       218 --l~--~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~  261 (785)
                        +.  ..+.|++|++++|.+...    +......+.++|+.|++++|.+..
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence              32  246799999999988642    222211357789999999998864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.8e-13  Score=115.94  Aligned_cols=102  Identities=27%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931           32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE  111 (785)
Q Consensus        32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~  111 (785)
                      |+|++++|+++.++  .+..+++|++|++++|.++. +|..|..+++|++|++++|.++ .+|.  |..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccCc--cccccccCeEECCC
Confidence            46677777776554  35666666666666666653 3445666666666666666665 3442  35666666666666


Q ss_pred             CCCcccC-CccccCCCCCcEEEcCCCccc
Q 003931          112 NQFQGKL-SPNVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus       112 n~i~~~~-~~~~~~l~~L~~L~L~~n~~~  139 (785)
                      |+++... ...+..+++|++|++++|+++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            6665432 234555555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=2.5e-14  Score=148.09  Aligned_cols=87  Identities=20%  Similarity=0.183  Sum_probs=37.1

Q ss_pred             cccCeeeccccccccC----CchhccCCCCCCEEEccCCCCcccc----CccccCCCCCCCEEEeecCcCccc----CCc
Q 003931          198 TNLSYLALAVNQLSGG----LPLSLSNLSKLNDLGLSDNFLSGEI----SANLIGNWTELESLQIQNNSFMGN----IPP  265 (785)
Q Consensus       198 ~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~  265 (785)
                      +.|+.+.+++|.++..    +...+..++.|+.|++++|.+...-    ....+..+++|+.|++++|.+...    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            3445555555444321    1122334455555555555543210    011133444555555555544321    122


Q ss_pred             cCcCCCCCcEEECcCcccc
Q 003931          266 EIGLLTKLQYLFLYRNNFS  284 (785)
Q Consensus       266 ~~~~l~~L~~L~L~~n~l~  284 (785)
                      .+..+++|++|++++|.++
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCC
T ss_pred             cccccccchhhhhhcCccC
Confidence            3344455555555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.8e-12  Score=112.06  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=86.3

Q ss_pred             CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCC-CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931            4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN-FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL   82 (785)
Q Consensus         4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   82 (785)
                      +.....++.+++.+... |..+.++++|+.|++++| .++.+.+++|.++++|+.|++++|.++.+.+.+|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            34456788888777643 455778888888888765 5888888888888888888888888888888888888888888


Q ss_pred             ECCCCCCcccCChhhhcCCCCCcEEECCCCCCc
Q 003931           83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ  115 (785)
Q Consensus        83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~  115 (785)
                      +|++|+++ .+|..+|..+ .|++|+|++|.+.
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence            88888887 6777776554 6888888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=3e-13  Score=126.53  Aligned_cols=41  Identities=32%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             cccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc
Q 003931          169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS  211 (785)
Q Consensus       169 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  211 (785)
                      ++..+++|++|++++|.++.. + .+..+++|++|++++|.++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC
T ss_pred             HHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc
Confidence            344444444444444444321 1 2344444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.7e-11  Score=105.94  Aligned_cols=66  Identities=23%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             CCCCCCCCEEEcccC-cccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc
Q 003931          146 IGSMSNLQLVELFNN-SFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS  211 (785)
Q Consensus       146 l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  211 (785)
                      +.++++|++|++++| .++...+.+|.++++|+.|++++|+++...+..|..+++|++|++++|+++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            333444444444332 233333333444444444444444444333333444444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=1.3e-12  Score=122.15  Aligned_cols=107  Identities=28%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             CCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCee
Q 003931          462 VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNL  541 (785)
Q Consensus       462 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  541 (785)
                      .+++|+.|++++|+++.. + .+..+++|+.|++++|.|+ .++..+..++.|+.|++++|+++..  ..+..+++|+.|
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L  120 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEE
T ss_pred             cccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccccccc
Confidence            334444444444444322 1 2444444555555555444 2233333334455555555554422  224444455555


Q ss_pred             cccCCcccCcCC-cccccCCCCCeEecCCCcCc
Q 003931          542 NLSNNHLTGEIP-KSISNLTELAYLDLSNNKLT  573 (785)
Q Consensus       542 ~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~  573 (785)
                      ++++|+++.... ..+..+++|++|++++|++.
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccc
Confidence            555555442111 23444555555555555544

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.3e-11  Score=119.71  Aligned_cols=89  Identities=27%  Similarity=0.354  Sum_probs=63.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+..+...+.|+||||||++++||+||++|..       +..++....   ...+|.      ...+   .+.+++..|
T Consensus       203 PE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~---~~~~p~------~~~~---~l~~li~~c  270 (311)
T d1r0pa_         203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR---RLLQPE------YCPD---PLYEVMLKC  270 (311)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTC---CCCCCT------TCCH---HHHHHHHHH
T ss_pred             hHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCC---CCCCcc------cCcH---HHHHHHHHH
Confidence            466677889999999999999999999988842       122211111   011111      1112   345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      ++.+|++||+|.||++.|+++..++...
T Consensus       271 l~~dP~~RPs~~ei~~~L~~i~~~~~~~  298 (311)
T d1r0pa_         271 WHPKAEMRPSFSELVSRISAIFSTFIGE  298 (311)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred             cCCCHhHCcCHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999998776554

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.1e-11  Score=115.54  Aligned_cols=85  Identities=25%  Similarity=0.385  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC-c------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG-E------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~-~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-.....+.|+|||||||++.|++||++|- +      +...+...   ....+|..         +-..+.+++..|
T Consensus       171 PE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~---~~~~~p~~---------~~~~l~~li~~c  238 (263)
T d1sm2a_         171 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG---FRLYKPRL---------ASTHVYQIMNHC  238 (263)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHT---CCCCCCTT---------SCHHHHHHHHHH
T ss_pred             hHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhc---CCCCCccc---------cCHHHHHHHHHH
Confidence            46666778899999999999999999976553 1      11111110   01111111         112345778999


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++.+|++||+|.||++.|++|+++
T Consensus       239 l~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         239 WKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccCCHhHCcCHHHHHHHHHHHHhC
Confidence            999999999999999999998653

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.7e-10  Score=111.21  Aligned_cols=85  Identities=21%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+..+..+|.|+|||||||++.||+| |+.|.+      +..++...      ..+....   ....   .+.++...|
T Consensus       169 PE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~------~~~~~~~---~~~~---~~~~li~~c  236 (262)
T d1byga_         169 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG------YKMDAPD---GCPP---AVYEVMKNC  236 (262)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTT------CCCCCCT---TCCH---HHHHHHHHH
T ss_pred             hHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC------CCCCCCc---cCCH---HHHHHHHHH
Confidence            577778889999999999999999999 565532      22222111      1111111   1112   244667899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .+.+|++||+|.||+++|++++.+
T Consensus       237 l~~dP~~Rps~~~l~~~L~~i~~~  260 (262)
T d1byga_         237 WHLDAAMRPSFLQLREQLEHIKTH  260 (262)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cccCHhHCcCHHHHHHHHHHHHhC
Confidence            999999999999999999998764

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.6e-10  Score=114.00  Aligned_cols=87  Identities=18%  Similarity=0.276  Sum_probs=55.9

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM  753 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m  753 (785)
                      ..+.|+|||||||++.||+||+.|.+-.   ..+.. ........|.+.......   -..+.++...|++.+|++||||
T Consensus       185 ~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~---~~~l~~li~~cl~~dp~~RPt~  260 (276)
T d1uwha_         185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF-MVGRGYLSPDLSKVRSNC---PKAMKRLMAECLKKKRDERPLF  260 (276)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH-HHHHTSCCCCGGGSCTTC---CHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHH-HHhcCCCCCcchhccccc---hHHHHHHHHHHcCCCHhHCcCH
Confidence            4688999999999999999999995310   00000 000011122211100111   1234567789999999999999


Q ss_pred             HHHHHHHHhccccc
Q 003931          754 RFVAQELSAKTQAY  767 (785)
Q Consensus       754 ~~vv~~l~~~~~~~  767 (785)
                      .||++.|+.++.+.
T Consensus       261 ~~il~~Le~l~~~~  274 (276)
T d1uwha_         261 PQILASIELLARSL  274 (276)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999987653

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.6e-10  Score=114.69  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-...+.+.|+|||||||++.||+||+.|-...   .....+.+.++.....+...  .+...+.+++..|++.+|++
T Consensus       182 PE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~---~~~~~~~~~i~~~~~~~~~~--~~~~~l~~li~~cl~~~p~~  256 (283)
T d1mqba_         182 PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE---LSNHEVMKAINDGFRLPTPM--DCPSAIYQLMMQCWQQERAR  256 (283)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT---CCHHHHHHHHHTTCCCCCCT--TCBHHHHHHHHHHTCSSTTT
T ss_pred             HHHHccCCCCCcccccccHHHHHHHHhCCCCcccc---CCHHHHHHHHhccCCCCCch--hhHHHHHHHHHHHCcCCHhH
Confidence            46666778899999999999999999987763200   00000111111111111000  11123557889999999999


Q ss_pred             CCChHHHHHHHHhccc
Q 003931          750 RPSMRFVAQELSAKTQ  765 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~  765 (785)
                      ||+|.||+++|+++.+
T Consensus       257 RPt~~eil~~L~~l~~  272 (283)
T d1mqba_         257 RPKFADIVSILDKLIR  272 (283)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhh
Confidence            9999999999988754

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=1.4e-10  Score=116.43  Aligned_cols=84  Identities=23%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCC-Cc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHP-GE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p-~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-.....|.|+||||||||+.||+||+.| ..      +...+.         +.........   +...+.++...|
T Consensus       211 PE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~---------~~~~~~~p~~---~~~~~~~li~~c  278 (301)
T d1lufa_         211 PESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVR---------DGNILACPEN---CPLELYNLMRLC  278 (301)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH---------TTCCCCCCTT---CCHHHHHHHHHH
T ss_pred             HHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHH---------cCCCCCCCcc---chHHHHHHHHHH
Confidence            4666677889999999999999999999754 32      222221         1111110001   112356789999


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++.+|++||||.||+++|+++.+
T Consensus       279 l~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         279 WSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             cCCChhHCcCHHHHHHHHHHhcC
Confidence            99999999999999999998853

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=2.7e-10  Score=113.85  Aligned_cols=84  Identities=27%  Similarity=0.467  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+..+...+.++|||||||++.||+| |+.|..      +...+...        .++..+. .   +-..+.+++..|
T Consensus       202 PE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~--------~~~~~~~-~---~~~~l~~li~~c  269 (299)
T d1jpaa_         202 PEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQD--------YRLPPPM-D---CPSALHQLMLDC  269 (299)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT--------CCCCCCT-T---CCHHHHHHHHHH
T ss_pred             HHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcC--------CCCCCCc-c---chHHHHHHHHHH
Confidence            366666788999999999999999999 898843      22222111        1111111 1   112345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++.+|++||+|.||++.|+++.+
T Consensus       270 l~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         270 WQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             TCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHHHHHhc
Confidence            99999999999999999988744

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.9e-10  Score=113.97  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=59.4

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhcc--------Ccc----c----ccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLS--------GEL----F----LKDVLDQRLPPPTGQLAEAVVLTINVAL  740 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~--------~~~----~----~~~~~d~~l~~~~~~~~~~~~~~~~ial  740 (785)
                      ..+.|+|||||||+++||+||+.|........        ...    .    ..+..+|.+... ....+....+.+++.
T Consensus       194 ~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~li~  272 (303)
T d1vjya_         194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMR  272 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGCHHHHHHHHHHH
T ss_pred             CcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcc-cCChHHHHHHHHHHH
Confidence            46789999999999999999987753111000        000    0    111222332211 112245556778999


Q ss_pred             hcCCCCCCCCCChHHHHHHHHhcccc
Q 003931          741 ACTSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      .|++.+|++||+|.||+++|+++...
T Consensus       273 ~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         273 ECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             TTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999988654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4e-10  Score=111.48  Aligned_cols=89  Identities=22%  Similarity=0.349  Sum_probs=62.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+....+.+.|+|||||||++.||+||++|..       +..++....      .+....   ...+   ++.+++..|
T Consensus       183 PE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~------~~~~~~---~~~~---~l~~li~~c  250 (285)
T d1fmka3         183 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY------RMPCPP---ECPE---SLHDLMCQC  250 (285)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC------CCCCCT---TSCH---HHHHHHHHH
T ss_pred             hHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcC------CCCCCc---ccCH---HHHHHHHHH
Confidence            577788899999999999999999999887732       122221110      111111   1112   345778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQAYLPE  770 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~~~  770 (785)
                      .+.+|++||+|.+|+++|++.-.+..++
T Consensus       251 l~~dP~~Rps~~~i~~~L~~~~~~~~p~  278 (285)
T d1fmka3         251 WRKEPEERPTFEYLQAFLEDYFTSTEPQ  278 (285)
T ss_dssp             TCSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred             cccCHhHCcCHHHHHHHHhhhhcCCCCC
Confidence            9999999999999999999876554433

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.1e-10  Score=111.82  Aligned_cols=84  Identities=21%  Similarity=0.273  Sum_probs=57.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-.....+.|+|||||||++.||+||++|-.       +...+...      ..+....   ...+   .+.+++..|
T Consensus       179 PE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~------~~~~~p~---~~~~---~l~~li~~c  246 (272)
T d1qpca_         179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG------YRMVRPD---NCPE---ELYQLMRLC  246 (272)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT------CCCCCCT---TCCH---HHHHHHHHH
T ss_pred             hHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhc------CCCCCcc---cChH---HHHHHHHHH
Confidence            466667788999999999999999999877732       11111110      1111111   1112   245678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      ++.+|++||||.||+++|++.-.
T Consensus       247 l~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         247 WKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHhhhhhh
Confidence            99999999999999999987543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.2e-10  Score=110.11  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+-.....+.|+|||||||++.|++| |+.|..      +...+....      .+....   ....   .+.++...|
T Consensus       181 PE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~------~~~~p~---~~~~---~l~~li~~c  248 (285)
T d1u59a_         181 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK------RMECPP---ECPP---ELYALMSDC  248 (285)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTC------CCCCCT---TCCH---HHHHHHHHT
T ss_pred             hHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC------CCCCCC---cCCH---HHHHHHHHH
Confidence            466667788999999999999999998 899953      111111110      011111   1112   345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++.+|++||+|.+|++.|+.+..+
T Consensus       249 l~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         249 WIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999876543

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-09  Score=109.92  Aligned_cols=85  Identities=20%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCC-Cc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHP-GE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p-~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.-....++.|+|||||||++.||+||+.| ..      +...+...      ..+....   ...++   +.++...|
T Consensus       195 PE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~------~~~~~~~---~~~~~---~~~li~~c  262 (309)
T d1fvra_         195 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQG------YRLEKPL---NCDDE---VYDLMRQC  262 (309)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGT------CCCCCCT---TBCHH---HHHHHHHH
T ss_pred             hHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhc------CCCCCCc---cCCHH---HHHHHHHH
Confidence            4555677889999999999999999998765 21      22222111      0111111   11122   34567789


Q ss_pred             CCCCCCCCCChHHHHHHHHhcccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      ++.+|++||+|.||++.|+++.+.
T Consensus       263 l~~dP~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         263 WREKPYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             cCCChhHCcCHHHHHHHHHHHHhc
Confidence            999999999999999999887654

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.3e-09  Score=107.33  Aligned_cols=82  Identities=23%  Similarity=0.331  Sum_probs=56.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.-.....+.|+|||||||++.|++| |+.|..      +...+....        ++..+. ...+   .+.++...|
T Consensus       179 PE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~--------~~~~p~-~~~~---~~~~li~~c  246 (277)
T d1xbba_         179 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGE--------RMGCPA-GCPR---EMYDLMNLC  246 (277)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC--------CCCCCT-TCCH---HHHHHHHHH
T ss_pred             chhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCC--------CCCCCc-ccCH---HHHHHHHHH
Confidence            465667788999999999999999998 899853      111111110        111111 1112   345678899


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ++.+|++||+|.+|+++|+..
T Consensus       247 l~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         247 WTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             TCSSTTTSCCHHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHhhCH
Confidence            999999999999999998764

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.7e-09  Score=104.83  Aligned_cols=83  Identities=25%  Similarity=0.384  Sum_probs=57.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.++|||||||++.||+| |+.|..      ...++.....       +...+. ...   ..+.++...|
T Consensus       183 PE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~-------~~~~~~-~~~---~~l~~li~~c  251 (273)
T d1u46a_         183 PESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGE-------RLPRPE-DCP---QDIYNVMVQC  251 (273)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCC-------CCCCCT-TCC---HHHHHHHHHH
T ss_pred             HHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCC-------CCCCcc-ccc---HHHHHHHHHH
Confidence            466667788999999999999999999 898853      2222222111       010000 111   1245778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ++.+|++||||.||++.|.+.
T Consensus       252 l~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         252 WAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHH
T ss_pred             cCCChhHCcCHHHHHHHHHhc
Confidence            999999999999999998764

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.3e-09  Score=109.48  Aligned_cols=89  Identities=24%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCC-CchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHP-GELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |.......+.|+|||||||+++||+||++| ..-   .........+.+..........   -..+.++...|++.+|++
T Consensus       205 e~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~---~~~~~~~~~i~~~~~~~~p~~~---~~~l~~li~~cl~~~P~~  278 (308)
T d1p4oa_         205 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG---LSNEQVLRFVMEGGLLDKPDNC---PDMLFELMRMCWQYNPKM  278 (308)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTT---SCHHHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGG
T ss_pred             HHHccCCCCcccccccHHHHHHHHHhCCCCCCCC---CCHHHHHHHHHhCCCCCCcccc---hHHHHHHHHHHcCCChhH
Confidence            555667788999999999999999999754 220   0001111122222221111111   123567788999999999


Q ss_pred             CCChHHHHHHHHhccc
Q 003931          750 RPSMRFVAQELSAKTQ  765 (785)
Q Consensus       750 Rp~m~~vv~~l~~~~~  765 (785)
                      ||+|.+|+++|++..+
T Consensus       279 RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         279 RPSFLEIISSIKEEME  294 (308)
T ss_dssp             SCCHHHHHHHHGGGSC
T ss_pred             CcCHHHHHHHHHHhcC
Confidence            9999999999977644

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.4e-09  Score=105.80  Aligned_cols=82  Identities=20%  Similarity=0.410  Sum_probs=56.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|+......+.|+|||||||++.||+| |+.|.+      +...+....   ....|..     .    -..+.++.-.|
T Consensus       170 PE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~---~~~~p~~-----~----~~~l~~li~~c  237 (258)
T d1k2pa_         170 PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGL---RLYRPHL-----A----SEKVYTIMYSC  237 (258)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTC---CCCCCTT-----C----CHHHHHHHHHT
T ss_pred             cHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCC---CCCCccc-----c----cHHHHHHHHHH
Confidence            466667788999999999999999999 788854      111111100   0111111     1    12345778899


Q ss_pred             CCCCCCCCCChHHHHHHHHhc
Q 003931          743 TSTTPDTRPSMRFVAQELSAK  763 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~  763 (785)
                      ++.+|++||||.|+++.|.+|
T Consensus       238 l~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         238 WHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             TCSSGGGSCCHHHHHHHHHCC
T ss_pred             ccCCHhHCcCHHHHHHHhhCC
Confidence            999999999999999998764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.5e-09  Score=107.67  Aligned_cols=90  Identities=19%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-.....+.|+|||||||++.||+||+.|-.-..   ....+.+.++...... .....   ..+.+++..|.+.+|+
T Consensus       185 PE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~---~~~~~~~~i~~~~~~~~~~~~~---~~l~~li~~cl~~dP~  258 (287)
T d1opja_         185 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI---DLSQVYELLEKDYRMERPEGCP---EKVYELMRACWQWNPS  258 (287)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC---CHHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGG
T ss_pred             hHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc---hHHHHHHHHhcCCCCCCCccch---HHHHHHHHHHcCCCHh
Confidence            466667788999999999999999999887732000   0000111111111100 00111   2345778899999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||||.||+++|+.+.+
T Consensus       259 ~Rps~~ei~~~L~~~~~  275 (287)
T d1opja_         259 DRPSFAEIHQAFETMFQ  275 (287)
T ss_dssp             GSCCHHHHHHHHHHTTS
T ss_pred             HCcCHHHHHHHHHHHHH
Confidence            99999999999988754

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.3e-09  Score=109.66  Aligned_cols=91  Identities=13%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+......+.|+|||||||++.||+||++|..-.  ......+.++++....... ....   ..+.++...|++.+|+
T Consensus       216 PE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~--~~~~~~~~~~i~~~~~~~~~~~~~---~~l~~Li~~cl~~dP~  290 (311)
T d1t46a_         216 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG--MPVDSKFYKMIKEGFRMLSPEHAP---AEMYDIMKTCWDADPL  290 (311)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT--CCSSHHHHHHHHHTCCCCCCTTSC---HHHHHHHHHHTCSSGG
T ss_pred             HHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhcCCCCCCccccc---HHHHHHHHHHcCCChh
Confidence            46667788899999999999999999966663200  0000111112211111100 0111   2245678899999999


Q ss_pred             CCCChHHHHHHHHhccc
Q 003931          749 TRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~~  765 (785)
                      +||+|.+|+++|+++-.
T Consensus       291 ~RPs~~~il~~L~~~i~  307 (311)
T d1t46a_         291 KRPTFKQIVQLIEKQIS  307 (311)
T ss_dssp             GSCCHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHhhc
Confidence            99999999999987543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.1e-09  Score=107.46  Aligned_cols=83  Identities=23%  Similarity=0.357  Sum_probs=57.0

Q ss_pred             hhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      |+-.....+.|+||||||||+.||+| |+.|..      +...+....      .+..  +. ...+   .+.++...|.
T Consensus       207 E~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~------~~~~--p~-~~~~---~l~~li~~cl  274 (299)
T d1fgka_         207 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH------RMDK--PS-NCTN---ELYMMMRDCW  274 (299)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC------CCCC--CS-SCCH---HHHHHHHHHT
T ss_pred             hHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCC------CCCC--Cc-cchH---HHHHHHHHHc
Confidence            55566788999999999999999999 566632      111111110      1111  11 1111   2457889999


Q ss_pred             CCCCCCCCChHHHHHHHHhccc
Q 003931          744 STTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      +.+|++||||.||+++|+++-+
T Consensus       275 ~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         275 HAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCHhHCcCHHHHHHHHHHHhh
Confidence            9999999999999999998743

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.1e-09  Score=108.35  Aligned_cols=87  Identities=28%  Similarity=0.446  Sum_probs=57.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCccccccccc--CCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLD--QRLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+......+.|+|||||||++.||+| |+.|.+-...    ..+.+.+.  .++..+. .   +-..+.++...|++.+
T Consensus       182 PE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~----~~~~~~i~~~~~~~~p~-~---~~~~~~~li~~cl~~d  253 (317)
T d1xkka_         182 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA----SEISSILEKGERLPQPP-I---CTIDVYMIMVKCWMID  253 (317)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCG----GGHHHHHHHTCCCCCCT-T---BCHHHHHHHHHHTCSS
T ss_pred             hHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCH----HHHHHHHHcCCCCCCCc-c---cCHHHHHHHHHhCCCC
Confidence            466667788999999999999999999 7777541100    00111111  1111111 1   1123456788999999


Q ss_pred             CCCCCChHHHHHHHHhcc
Q 003931          747 PDTRPSMRFVAQELSAKT  764 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~~~~  764 (785)
                      |++||+|.||++.|.++.
T Consensus       254 P~~RPs~~eil~~l~~~~  271 (317)
T d1xkka_         254 ADSRPKFRELIIEFSKMA  271 (317)
T ss_dssp             GGGSCCHHHHHHHHHHHH
T ss_pred             hhhCcCHHHHHHHHHHHH
Confidence            999999999999987763

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.4e-09  Score=107.21  Aligned_cols=88  Identities=24%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCC-CCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRH-PGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~-p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|+-.....+.|+|||||||++.||+||++ |..-   ...+..  .+.+-..+....   ..   -..+.+++..|.+.
T Consensus       205 PE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~---~~---~~~l~~li~~cl~~  276 (299)
T d1ywna1         205 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR--RLKEGTRMRAPD---YT---TPEMYQTMLDCWHG  276 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHH--HHHHTCCCCCCT---TC---CHHHHHHHHHHTCS
T ss_pred             hhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHH--HHhcCCCCCCCc---cC---CHHHHHHHHHHcCC
Confidence            466667788999999999999999999865 4320   000000  000000111111   11   11345678899999


Q ss_pred             CCCCCCChHHHHHHHHhccc
Q 003931          746 TPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      +|++||||.||++.|+++-+
T Consensus       277 dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         277 EPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             SGGGSCCHHHHHHHHHHHHH
T ss_pred             ChhHCcCHHHHHHHHHHHHh
Confidence            99999999999999988743

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8.1e-09  Score=101.62  Aligned_cols=84  Identities=25%  Similarity=0.384  Sum_probs=57.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.-.....+.|+|||||||++.||+| |+.|.+      +...+.....      +....   ...+   .+.++...|
T Consensus       178 pE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~------~~~~~---~~~~---~~~~li~~c  245 (273)
T d1mp8a_         178 PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGER------LPMPP---NCPP---TLYSLMTKC  245 (273)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC------CCCCT---TCCH---HHHHHHHHH
T ss_pred             hhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------CCCCC---CCCH---HHHHHHHHH
Confidence            355556778899999999999999998 788753      1111111100      11111   1112   244667899


Q ss_pred             CCCCCCCCCChHHHHHHHHhccc
Q 003931          743 TSTTPDTRPSMRFVAQELSAKTQ  765 (785)
Q Consensus       743 ~~~~p~~Rp~m~~vv~~l~~~~~  765 (785)
                      .+.+|++||+|.||++.|+++.+
T Consensus       246 l~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         246 WAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHHHHHHH
Confidence            99999999999999999988754

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.2e-09  Score=105.77  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTT  746 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~  746 (785)
                      +|+-.....+.|+|||||||++.||+| |+.|..-..   ......+++..  ++..+. ...+   .+.++...|.+.+
T Consensus       235 PE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~---~~~~~~~~~~~~~~~~~p~-~~~~---~l~~li~~cl~~d  307 (325)
T d1rjba_         235 PESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP---VDANFYKLIQNGFKMDQPF-YATE---EIYIIMQSCWAFD  307 (325)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC---CSHHHHHHHHTTCCCCCCT-TCCH---HHHHHHHHHTCSS
T ss_pred             hHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC---HHHHHHHHHhcCCCCCCCC-cCCH---HHHHHHHHHcCCC
Confidence            466667788999999999999999998 888843000   00001111111  111111 1112   2456788999999


Q ss_pred             CCCCCChHHHHHHHH
Q 003931          747 PDTRPSMRFVAQELS  761 (785)
Q Consensus       747 p~~Rp~m~~vv~~l~  761 (785)
                      |++||||.||++.|.
T Consensus       308 P~~RPt~~ei~~~L~  322 (325)
T d1rjba_         308 SRKRPSFPNLTSFLG  322 (325)
T ss_dssp             GGGSCCHHHHHHHHH
T ss_pred             hhHCcCHHHHHHHHh
Confidence            999999999999985

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=5.6e-08  Score=95.68  Aligned_cols=85  Identities=21%  Similarity=0.266  Sum_probs=55.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------h-hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------L-ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC  742 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C  742 (785)
                      +|.......+.++|||||||++.||+||+.|.+      . ...+...........+.+       .++   +.++...|
T Consensus       183 PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~-------s~~---l~~li~~~  252 (277)
T d1o6ya_         183 PEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGL-------SAD---LDAVVLKA  252 (277)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSC-------CHH---HHHHHHHH
T ss_pred             HHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCC-------CHH---HHHHHHHH
Confidence            455556678899999999999999999999953      0 011111111111111111       122   33456689


Q ss_pred             CCCCCCCCC-ChHHHHHHHHhcc
Q 003931          743 TSTTPDTRP-SMRFVAQELSAKT  764 (785)
Q Consensus       743 ~~~~p~~Rp-~m~~vv~~l~~~~  764 (785)
                      .+.+|++|| ++.++.+.|.++.
T Consensus       253 L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         253 LAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             TCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ccCCHhHCHhHHHHHHHHHHHHh
Confidence            999999999 8999999988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.8e-08  Score=85.76  Aligned_cols=68  Identities=29%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             chhccccCCeeecccCccccCC--CcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCcc
Q 003931          507 ELGNLTRLGVLSLDSNELTGKI--PTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG  574 (785)
Q Consensus       507 ~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  574 (785)
                      .+..++.|++|+|++|+++...  +..+..+++|+.|++++|.++...+-.+.....|+.|++++|.+..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3345556666666666665332  2334455566666666666553222122233345556666665554

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4.4e-08  Score=95.25  Aligned_cols=82  Identities=23%  Similarity=0.328  Sum_probs=50.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.+...+.|+|||||||++.||+||+.|.+-...   ......+......-+. ...++   +.++...|.+.+|++
T Consensus       173 PE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dp~~  245 (263)
T d2j4za1         173 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY---QETYKRISRVEFTFPD-FVTEG---ARDLISRLLKHNPSQ  245 (263)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHTTCCCCCT-TSCHH---HHHHHHHHTCSSGGG
T ss_pred             HHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH---HHHHHHHHcCCCCCCc-cCCHH---HHHHHHHHccCCHhH
Confidence            4555566678999999999999999999999531000   0000111111111010 11122   234566899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      |||+.||.+
T Consensus       246 R~t~~eil~  254 (263)
T d2j4za1         246 RPMLREVLE  254 (263)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHHc
Confidence            999999865

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.1e-07  Score=92.81  Aligned_cols=83  Identities=13%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.....+.|+|||||||++.||+||+.|.+-...   ......+.+...........++   +.++.-.|.+.+|++
T Consensus       183 PE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~s~~---l~~li~~~L~~dp~~  256 (269)
T d2java1         183 PEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ---KELAGKIREGKFRRIPYRYSDE---LNEIITRMLNLKDYH  256 (269)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHTCCCCCCTTSCHH---HHHHHHHHTCSSGGG
T ss_pred             HHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH---HHHHHHHHcCCCCCCCcccCHH---HHHHHHHHcCCChhH
Confidence            3555556678999999999999999999999531000   0000111111111100111122   345567899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+++
T Consensus       257 Rps~~ell~  265 (269)
T d2java1         257 RPSVEEILE  265 (269)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHHh
Confidence            999999853

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.8e-07  Score=89.78  Aligned_cols=71  Identities=17%  Similarity=0.318  Sum_probs=46.1

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +.+.|+|||||||++.||+||+.|..       +...+... .....++...          ...+.++...|.+.+|++
T Consensus       188 ~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~-~~~~~~~~~~----------~~~~~~li~~~l~~dp~~  256 (270)
T d1t4ha_         188 KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG-VKPASFDKVA----------IPEVKEIIEGCIRQNKDE  256 (270)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT-CCCGGGGGCC----------CHHHHHHHHHHSCSSGGG
T ss_pred             CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcC-CCCcccCccC----------CHHHHHHHHHHccCCHhH
Confidence            57899999999999999999999953       00111000 0000011110          112346678999999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      |||+.|+.+
T Consensus       257 R~s~~ell~  265 (270)
T d1t4ha_         257 RYSIKDLLN  265 (270)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHhC
Confidence            999999854

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=7.6e-08  Score=95.97  Aligned_cols=95  Identities=14%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|.......+.|+|||||||++.|++||+.|..-.................+..+.... ...-..+.++.-.|.+.+|+
T Consensus       182 PE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~  261 (299)
T d1ckia_         182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD  261 (299)
T ss_dssp             HHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTT
T ss_pred             HHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChh
Confidence            35555566789999999999999999999995311000000000000000000000000 00002244566789999999


Q ss_pred             CCCChHHHHHHHHhcc
Q 003931          749 TRPSMRFVAQELSAKT  764 (785)
Q Consensus       749 ~Rp~m~~vv~~l~~~~  764 (785)
                      +||++.++.+.|+++.
T Consensus       262 ~RP~~~~i~~~l~~~~  277 (299)
T d1ckia_         262 DKPDYSYLRQLFRNLF  277 (299)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHH
Confidence            9999999999888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-07  Score=83.31  Aligned_cols=88  Identities=27%  Similarity=0.193  Sum_probs=45.9

Q ss_pred             ccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcC--CcccccCCCCCeEecCCCcCccCCCccccccCCCc
Q 003931          510 NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI--PKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLL  587 (785)
Q Consensus       510 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  587 (785)
                      .+..+..++..++... .++..+..++.|++|++++|+++...  +..+..+++|++|++++|+++...+-.+.....|+
T Consensus        40 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          40 AQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE  118 (162)
T ss_dssp             TTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred             hccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence            3344444444443332 22333445666777777777666431  23445566667777777666643222222334566


Q ss_pred             EEeCCCCcCcc
Q 003931          588 SLNLSHNDLSG  598 (785)
Q Consensus       588 ~L~ls~N~l~~  598 (785)
                      .+++++|++..
T Consensus       119 ~L~L~~Npl~~  129 (162)
T d1koha1         119 ELWLDGNSLSD  129 (162)
T ss_dssp             SCCCTTSTTSS
T ss_pred             eeecCCCCcCc
Confidence            66666666653

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.5e-07  Score=91.39  Aligned_cols=85  Identities=15%  Similarity=0.136  Sum_probs=48.6

Q ss_pred             hhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      .....+.|+||||+||++.||+||+.|..-...... ......+.......+.......-..+.++...|.+.+|++||+
T Consensus       186 ~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  265 (335)
T d2ozaa1         186 GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  265 (335)
T ss_dssp             CGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             cCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcC
Confidence            344567899999999999999999999531000000 0000011111111111111111123456677899999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      +.|+.+
T Consensus       266 ~~eil~  271 (335)
T d2ozaa1         266 ITEFMN  271 (335)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999976

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=2e-07  Score=92.81  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|.-.....+.|+|||||||++.||+||+.|..      ....+.....   -.+.....   ...+   .+.++...|.
T Consensus       178 PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~---~~s~---~~~~li~~~L  248 (307)
T d1a06a_         178 PEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEY---EFDSPYWD---DISD---SAKDFIRHLM  248 (307)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCC---CCCTTTTT---TSCH---HHHHHHHHHS
T ss_pred             cHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCC---CCCCcccc---CCCH---HHHHHHHHHc
Confidence            455555667899999999999999999999953      1111111000   00000000   1111   2345677899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++|||+.|+.+
T Consensus       249 ~~dP~~R~s~~eil~  263 (307)
T d1a06a_         249 EKDPEKRFTCEQALQ  263 (307)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             cCCHhHCcCHHHHhc
Confidence            999999999999865

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.8e-07  Score=88.93  Aligned_cols=86  Identities=16%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.|+|||||||++.||+||+.|..-...   ......+.......+.......-..+.++.-.|.+.+|++
T Consensus       185 PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  261 (293)
T d1jksa_         185 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKK  261 (293)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGG
T ss_pred             HHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH---HHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhH
Confidence            3555556788999999999999999999999530000   0000001110100000000000012335667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      ||++.|+.+
T Consensus       262 R~s~~eil~  270 (293)
T d1jksa_         262 RMTIQDSLQ  270 (293)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHhc
Confidence            999999864

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.1e-07  Score=89.43  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             hhhhhcc-cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          671 ELAVTMR-VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       671 e~~~~~~-~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      |+-.... .+.++||||+||++.||+||+.|.+-...  .............. .......++   +.++.-.|.+.+|+
T Consensus       175 E~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~---~~~li~~~L~~dP~  249 (271)
T d1nvra_         175 ELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD--SCQEYSDWKEKKTYLNPWKKIDSA---PLALLHKILVENPS  249 (271)
T ss_dssp             HHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSST--TSHHHHHHHTTCTTSTTGGGSCHH---HHHHHHHHSCSSTT
T ss_pred             hHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCCh--HHHHHHHHhcCCCCCCccccCCHH---HHHHHHHHcCCChh
Confidence            4433333 36789999999999999999999531100  00000000010000 000111122   23456689999999


Q ss_pred             CCCChHHHH
Q 003931          749 TRPSMRFVA  757 (785)
Q Consensus       749 ~Rp~m~~vv  757 (785)
                      +|||+.||.
T Consensus       250 ~R~t~~eil  258 (271)
T d1nvra_         250 ARITIPDIK  258 (271)
T ss_dssp             TSCCHHHHT
T ss_pred             HCcCHHHHh
Confidence            999999984

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.5e-07  Score=88.55  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc---CCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD---QRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ...+.|+|||||||++.||+||+.|..-...   ......+..   +.+..+ ....++   +.++.-.|.+.+|++|||
T Consensus       190 ~~y~~k~DiwSlGvilyemltg~~Pf~~~~~---~~~~~~i~~~~~~~~~~~-~~~s~~---~~~li~~~L~~dp~~R~t  262 (288)
T d2jfla1         190 RPYDYKADVWSLGITLIEMAEIEPPHHELNP---MRVLLKIAKSEPPTLAQP-SRWSSN---FKDFLKKCLEKNVDARWT  262 (288)
T ss_dssp             SSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG---GGHHHHHHHSCCCCCSSG-GGSCHH---HHHHHHHHSCSSTTTSCC
T ss_pred             CCCChhhhHHHHHHHHHHHhhCCCCCCCCCH---HHHHHHHHcCCCCCCCcc-ccCCHH---HHHHHHHHccCChhHCcC
Confidence            3457899999999999999999999531000   000001111   111111 111122   335567899999999999


Q ss_pred             hHHHHH
Q 003931          753 MRFVAQ  758 (785)
Q Consensus       753 m~~vv~  758 (785)
                      +.|+++
T Consensus       263 ~~ell~  268 (288)
T d2jfla1         263 TSQLLQ  268 (288)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999853

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9.7e-07  Score=86.85  Aligned_cols=79  Identities=20%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++|||||||++.||+||+.|..      .........      .+.+..+ ....++   +.++...|.
T Consensus       185 PE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~------~~~~~~~-~~~s~~---~~~li~~~L  254 (293)
T d1yhwa1         185 PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG------TPELQNP-EKLSAI---FRDFLNRCL  254 (293)
T ss_dssp             HHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHC------SCCCSSG-GGSCHH---HHHHHHHHT
T ss_pred             hhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCC------CCCCCCc-ccCCHH---HHHHHHHHc
Confidence            355555667899999999999999999999952      000000000      0111100 011112   335567899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.|+.+
T Consensus       255 ~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         255 DMDVEKRGSAKELLQ  269 (293)
T ss_dssp             CSSTTTSCCHHHHTT
T ss_pred             cCChhHCcCHHHHhc
Confidence            999999999999853

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=5.6e-07  Score=89.45  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=46.7

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF  755 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~  755 (785)
                      ...+.|+|||||||++.||+||+.|..-......-..+..--.+.....  ...++   +.++.-.|.+.+|++|||+.|
T Consensus       189 ~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~--~~s~~---~~~li~~~L~~dP~~Rpt~~e  263 (309)
T d1u5ra_         189 GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSG--HWSEY---FRNFVDSCLQKIPQDRPTSEV  263 (309)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCT--TSCHH---HHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCC--CCCHH---HHHHHHHHCcCChhHCcCHHH
Confidence            3578899999999999999999999530000000000000001111110  11122   345667899999999999999


Q ss_pred             HHH
Q 003931          756 VAQ  758 (785)
Q Consensus       756 vv~  758 (785)
                      +++
T Consensus       264 ll~  266 (309)
T d1u5ra_         264 LLK  266 (309)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            865

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=8.9e-07  Score=88.29  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=28.5

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      +|+-.....+.|+||||+||++.||+||+.|..
T Consensus       184 PE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~  216 (305)
T d1blxa_         184 PEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFR  216 (305)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cchhcCCCCChhehhhchHHHHHHHHHCCCCCC
Confidence            466666778899999999999999999999953

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.91  E-value=4.5e-07  Score=88.61  Aligned_cols=76  Identities=14%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCC--CCCC-CchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQR--LPPP-TGQLAEAVVLTINVALACTSTTPDTRPS  752 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~--l~~~-~~~~~~~~~~~~~ial~C~~~~p~~Rp~  752 (785)
                      ...+.|+||||+||++.||+||+.|..-...   ......+....  ...+ .....+   .+.++...|.+.+|++||+
T Consensus       190 ~~~~~~~DiwslGvilyeml~g~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~---~~~~li~~~L~~~p~~R~s  263 (277)
T d1phka_         190 PGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ---MLMLRMIMSGNYQFGSPEWDDYSD---TVKDLVSRFLVVQPQKRYT  263 (277)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCTTTGGGSCH---HHHHHHHHHCCSSGGGSCC
T ss_pred             CCCCchheEcccchhhhhhccCCCCCCCCCH---HHHHHHHHhCCCCCCCcccccCCH---HHHHHHHHHccCChhHCcC
Confidence            3457899999999999999999999530000   00000011111  1000 001112   2446678999999999999


Q ss_pred             hHHHH
Q 003931          753 MRFVA  757 (785)
Q Consensus       753 m~~vv  757 (785)
                      +.||.
T Consensus       264 ~~eil  268 (277)
T d1phka_         264 AEEAL  268 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99884

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.4e-06  Score=85.58  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=28.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+-.+...+.++||||+||++.||+||+.|.
T Consensus       172 PEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf  203 (322)
T d1s9ja_         172 PERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI  203 (322)
T ss_dssp             HHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCS
T ss_pred             chHHcCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence            56666778899999999999999999999995

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=97.85  E-value=8.8e-07  Score=89.62  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++||||+||++.||+||+.|..      ....+.....   ..++...   ....++   +.++...|.
T Consensus       194 PEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~---~~~s~~---~~~li~~~L  264 (350)
T d1koaa2         194 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW---NMDDSAF---SGISED---GKDFIRKLL  264 (350)
T ss_dssp             HHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC---CSCCGGG---GGCCHH---HHHHHHHHC
T ss_pred             HHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCcccc---cCCCHH---HHHHHHHHc
Confidence            466566677889999999999999999999953      1111100000   0000000   011122   334567899


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++|||+.|+.+
T Consensus       265 ~~dP~~R~t~~eil~  279 (350)
T d1koaa2         265 LADPNTRMTIHQALE  279 (350)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             cCChhHCcCHHHHhc
Confidence            999999999999865

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=97.84  E-value=2.6e-06  Score=86.14  Aligned_cols=80  Identities=13%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT  743 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~  743 (785)
                      +|+-.....+.++||||+||++.||+||+.|..      ....+.... .  -..+....   ....   .+.++...|.
T Consensus       197 PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~-~--~~~~~~~~---~~s~---~~~~li~~~L  267 (352)
T d1koba_         197 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCD-W--EFDEDAFS---SVSP---EAKDFIKNLL  267 (352)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCC-C--CCCSSTTT---TSCH---HHHHHHHTTS
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC-C--CCCccccc---CCCH---HHHHHHHHHc
Confidence            455556678899999999999999999999953      111110000 0  00111100   1111   2345678999


Q ss_pred             CCCCCCCCChHHHHH
Q 003931          744 STTPDTRPSMRFVAQ  758 (785)
Q Consensus       744 ~~~p~~Rp~m~~vv~  758 (785)
                      +.+|++||++.||.+
T Consensus       268 ~~dp~~R~s~~eil~  282 (352)
T d1koba_         268 QKEPRKRLTVHDALE  282 (352)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             cCChhHCcCHHHHhc
Confidence            999999999999965

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4e-07  Score=89.50  Aligned_cols=82  Identities=11%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-...   ......+......-+. ...++   +.++.-.|.+.+|++
T Consensus       179 PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dP~~  251 (288)
T d1uu3a_         179 PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---YLIFQKIIKLEYDFPE-KFFPK---ARDLVEKLLVLDATK  251 (288)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHTTCCCCCT-TCCHH---HHHHHHTTSCSSGGG
T ss_pred             ceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH---HHHHHHHHcCCCCCCc-cCCHH---HHHHHHHHccCCHhH
Confidence            4655566778999999999999999999999530000   0000011111111010 11112   335667899999999


Q ss_pred             CCChHHHHH
Q 003931          750 RPSMRFVAQ  758 (785)
Q Consensus       750 Rp~m~~vv~  758 (785)
                      |||+.|+.+
T Consensus       252 R~t~~e~~~  260 (288)
T d1uu3a_         252 RLGCEEMEG  260 (288)
T ss_dssp             STTSGGGTC
T ss_pred             CcCHHHHcC
Confidence            999998743

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.1e-06  Score=87.98  Aligned_cols=85  Identities=13%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931          671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR  750 (785)
Q Consensus       671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R  750 (785)
                      |.......+.++||||+||++.||+||+.|..-...   ......+.......+.......-..+.++.-.|...+|++|
T Consensus       173 e~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  249 (321)
T d1tkia_         173 EVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN---QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSR  249 (321)
T ss_dssp             HHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGS
T ss_pred             hhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHC
Confidence            555566778999999999999999999999530000   00001111111110000000000123456778999999999


Q ss_pred             CChHHHHH
Q 003931          751 PSMRFVAQ  758 (785)
Q Consensus       751 p~m~~vv~  758 (785)
                      |++.|+.+
T Consensus       250 ~s~~eil~  257 (321)
T d1tkia_         250 MTASEALQ  257 (321)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHhc
Confidence            99999976

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.3e-06  Score=85.30  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=47.7

Q ss_pred             hhhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931          670 TELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD  748 (785)
Q Consensus       670 ~e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~  748 (785)
                      +|+-..... +.++||||+||++.||+||+.|.+-...+...   .-.+.+.+      . ++   +.++.-.|.+.+|+
T Consensus       178 PE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i~~~---~~~~~~~~------s-~~---~~~li~~~L~~dp~  244 (273)
T d1xwsa_         178 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRG---QVFFRQRV------S-SE---CQHLIRWCLALRPS  244 (273)
T ss_dssp             HHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHC---CCCCSSCC------C-HH---HHHHHHHHTCSSGG
T ss_pred             HHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHHhhc---ccCCCCCC------C-HH---HHHHHHHHccCCHh
Confidence            354444433 56789999999999999999995411111000   00111111      1 12   23456689999999


Q ss_pred             CCCChHHHHH
Q 003931          749 TRPSMRFVAQ  758 (785)
Q Consensus       749 ~Rp~m~~vv~  758 (785)
                      +|||+.|+.+
T Consensus       245 ~R~s~~eil~  254 (273)
T d1xwsa_         245 DRPTFEEIQN  254 (273)
T ss_dssp             GSCCHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999854

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=97.77  E-value=2.6e-06  Score=83.83  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=24.1

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ....+.++||||+||++.||+||+.|.
T Consensus       175 ~~~~~~~~DiwslGv~l~el~~G~~pf  201 (286)
T d1ob3a_         175 SKKYSTTIDIWSVGCIFAEMVNGTPLF  201 (286)
T ss_dssp             CCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCCCcceeehhcCcHHHHHHHCCCCC
Confidence            345689999999999999999999995

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.75  E-value=6.1e-07  Score=88.70  Aligned_cols=94  Identities=11%  Similarity=0.141  Sum_probs=55.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC----chhHHHHHHHHHHHhhcCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT----GQLAEAVVLTINVALACTST  745 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~----~~~~~~~~~~~~ial~C~~~  745 (785)
                      +|.-.....+.++|||||||++.||+||+.|..-............+.+.....+.    ....++   +.++.-.|.+.
T Consensus       182 PE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~---l~~ii~~~~~~  258 (293)
T d1csna_         182 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE---FYKYMHYARNL  258 (293)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHH---HHHHHHHHHHC
T ss_pred             HHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHH---HHHHHHHHhcC
Confidence            35555566889999999999999999999995310000000000000000000000    000022   34455678999


Q ss_pred             CCCCCCChHHHHHHHHhcccc
Q 003931          746 TPDTRPSMRFVAQELSAKTQA  766 (785)
Q Consensus       746 ~p~~Rp~m~~vv~~l~~~~~~  766 (785)
                      +|++||+++.+.+.++++-..
T Consensus       259 ~~~~rP~y~~l~~~l~~~~~~  279 (293)
T d1csna_         259 AFDATPDYDYLQGLFSKVLER  279 (293)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHH
T ss_pred             CcccCcCHHHHHHHHHHHHHH
Confidence            999999999998888776443

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.5e-06  Score=83.42  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++|||||||+++||+||+.|.
T Consensus       178 ~~~~~~~DiwSlGvily~m~~G~~Pf  203 (298)
T d1gz8a_         178 KYYSTAVDIWSLGCIFAEMVTRRALF  203 (298)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             cCCCccccccccchhhhHHhhCCCCC
Confidence            34578999999999999999999995

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=5.4e-06  Score=81.84  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=22.8

Q ss_pred             ccccccceeeeehhhhhhhhCCCCC
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ..+.|+||||+||++.||+||+.|-
T Consensus       178 ~~~~~~DiwSlG~il~ell~g~~p~  202 (292)
T d1unla_         178 LYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             CCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             CCCchhhccccchHHHHHhhCCCCC
Confidence            3688999999999999999999993

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=79.11  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=25.3

Q ss_pred             hhhhhhc-ccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTM-RVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|+.... ..+.|+|||||||++.||+||+.|.
T Consensus       169 PE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf  201 (299)
T d1ua2a_         169 PELLFGARMYGVGVDMWAVGCILAELLLRVPFL  201 (299)
T ss_dssp             HHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             HHHHccCCCCChhhhhhhcchHHHHHHhCcCCC
Confidence            3443333 4588999999999999999999884

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.51  E-value=5.9e-06  Score=83.92  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=43.9

Q ss_pred             hhhh-hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          671 ELAV-TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       671 e~~~-~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      |+-. ....+.++|||||||++.||+||+.|.+-............+.......+. ....+   +.++.-.|.+.+|++
T Consensus       175 E~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~---~~~li~~~L~~dP~~  250 (364)
T d1omwa3         175 EVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD-SFSPE---LRSLLEGLLQRDVNR  250 (364)
T ss_dssp             HHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCS-SSCHH---HHHHHHHHTCSSTTT
T ss_pred             HHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCC-CCCHH---HHHHHHHHcccCHHH
Confidence            4443 334688999999999999999999995310000000000001111111011 11122   335566899999999


Q ss_pred             CCCh
Q 003931          750 RPSM  753 (785)
Q Consensus       750 Rp~m  753 (785)
                      ||++
T Consensus       251 R~t~  254 (364)
T d1omwa3         251 RLGC  254 (364)
T ss_dssp             STTT
T ss_pred             hCCC
Confidence            9995

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.7e-06  Score=84.89  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCch--hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL--ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP  747 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p  747 (785)
                      +|+......+.|+|||||||++.||+||+.|-.-  ...+...  +. .-++.....   ...+   +..+.-.|.+.+|
T Consensus       172 PE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~--i~-~~~~~~p~~---~s~~---~~dli~~~L~~dP  242 (320)
T d1xjda_         172 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHS--IR-MDNPFYPRW---LEKE---AKDLLVKLFVREP  242 (320)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH--HH-HCCCCCCTT---SCHH---HHHHHHHHSCSSG
T ss_pred             HHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHH--HH-cCCCCCCcc---CCHH---HHHHHHHhcccCC
Confidence            4666677889999999999999999999999530  0000000  00 001111111   1112   3355668999999


Q ss_pred             CCCCChH-HHH
Q 003931          748 DTRPSMR-FVA  757 (785)
Q Consensus       748 ~~Rp~m~-~vv  757 (785)
                      ++||++. ||.
T Consensus       243 ~~R~s~~~~l~  253 (320)
T d1xjda_         243 EKRLGVRGDIR  253 (320)
T ss_dssp             GGSBTTBSCGG
T ss_pred             CCCcCHHHHHH
Confidence            9999995 664

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3e-05  Score=77.27  Aligned_cols=26  Identities=12%  Similarity=0.105  Sum_probs=23.3

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCc
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ..+.|+|||||||++.||+||+.|.+
T Consensus       198 ~~~~k~DiwSlGvil~el~~g~~pf~  223 (318)
T d3blha1         198 DYGPPIDLWGAGCIMAEMWTRSPIMQ  223 (318)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCcHHHcccCCceeeeHhhCCCCCC
Confidence            46789999999999999999999953

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=5.2e-06  Score=82.60  Aligned_cols=82  Identities=18%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|.-.+...+.++||||+||++.||+||+.|..-...   ......+.......+.... .+   +..+.-.|.+.+|.+
T Consensus       170 PE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~---~~~~~~i~~~~~~~p~~~s-~~---~~~li~~~L~~dp~~  242 (316)
T d1fota_         170 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT---MKTYEKILNAELRFPPFFN-ED---VKDLLSRLITRDLSQ  242 (316)
T ss_dssp             HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHCCCCCCTTSC-HH---HHHHHHHHTCSCTTT
T ss_pred             HHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH---HHHHHHHHcCCCCCCCCCC-HH---HHHHHHHHhhhCHHh
Confidence            4555556678999999999999999999999530000   0000111111111111011 12   334566789999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      ||     ++.|+.+
T Consensus       243 R~~~~r~t~~~il~  256 (316)
T d1fota_         243 RLGNLQNGTEDVKN  256 (316)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             ccccchhhHHHHHc
Confidence            96     7888754

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.5e-05  Score=79.11  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|.......+.++||||+||++.|+++|+.|-
T Consensus       187 PE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF  218 (355)
T d2b1pa1         187 PEVILGMGYKENVDIWSVGCIMGEMVRHKILF  218 (355)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             hhhhcCCCCCCCcccccccchHHHHhhCCCCC
Confidence            46666677889999999999999999999884

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=1.4e-05  Score=79.56  Aligned_cols=78  Identities=15%  Similarity=0.259  Sum_probs=43.0

Q ss_pred             ccccccceeeeehhhhhhhhCCCCCchhhhccCcc-cccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC---
Q 003931          677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGEL-FLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS---  752 (785)
Q Consensus       677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~---  752 (785)
                      ..+.|+||||+||++.||+||+.|..-........ .......+...-+. ....+   +.++.-.|.+.+|++||+   
T Consensus       208 ~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~-~~s~~---~~~li~~~l~~dP~~R~s~~~  283 (322)
T d1vzoa_         208 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQ-EMSAL---AKDLIQRLLMKDPKKRLGCGP  283 (322)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSSGGGSTTSST
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcc-cCCHH---HHHHHHHHcccCHHHcCCCCc
Confidence            45789999999999999999999943110000000 00111111111111 11122   334556899999999996   


Q ss_pred             --hHHHHH
Q 003931          753 --MRFVAQ  758 (785)
Q Consensus       753 --m~~vv~  758 (785)
                        +.|+.+
T Consensus       284 ~t~~eil~  291 (322)
T d1vzoa_         284 RDADEIKE  291 (322)
T ss_dssp             TTHHHHHT
T ss_pred             ccHHHHHc
Confidence              566643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.36  E-value=8.7e-05  Score=65.69  Aligned_cols=61  Identities=10%  Similarity=0.061  Sum_probs=26.7

Q ss_pred             CCCccEEECCCCCCcccCChh---hhcCCCCCcEEECCCCCCccc-------CCccccCCCCCcEEEcCCC
Q 003931           76 CRNLTYLDLSLNKLSGLIPER---LFTNLGKLEYLNLTENQFQGK-------LSPNVSKLSNLIDLRLATN  136 (785)
Q Consensus        76 l~~L~~L~Ls~n~i~~~~~~~---~f~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~L~~n  136 (785)
                      .+.|++|++++|.++......   .+...+.|++|++++|.+...       +...+...+.|+.|+++.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            344555555555444221111   123344455555555543321       1223334456666666554

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3.1e-05  Score=78.23  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             hcccccccceeeeehhhhhhhhCCCCC
Q 003931          675 TMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       675 ~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ....+.|+||||+||++.||+||+.|.
T Consensus       197 ~~~~~~~~DIwSlG~il~el~~g~~pf  223 (350)
T d1q5ka_         197 ATDYTSSIDVWSAGCVLAELLLGQPIF  223 (350)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHTSCSS
T ss_pred             ccCCCcceeecccceEEEehhhCCCCC
Confidence            345789999999999999999999985

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=8.4e-06  Score=82.27  Aligned_cols=82  Identities=11%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-...   ......+.......+. ....+   +.++.-.|.+.+|.+
T Consensus       207 PE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dP~k  279 (350)
T d1rdqe_         207 PEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP---IQIYEKIVSGKVRFPS-HFSSD---LKDLLRNLLQVDLTK  279 (350)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TCCHH---HHHHHHHHSCSCTTT
T ss_pred             HHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH---HHHHHHHhcCCCCCCc-cCCHH---HHHHHHHHhhhCHHh
Confidence            4555566678999999999999999999999530000   0000011111111111 11112   335566899999999


Q ss_pred             CC-----ChHHHHH
Q 003931          750 RP-----SMRFVAQ  758 (785)
Q Consensus       750 Rp-----~m~~vv~  758 (785)
                      ||     ++.|+.+
T Consensus       280 R~~~~r~t~~ell~  293 (350)
T d1rdqe_         280 RFGNLKNGVNDIKN  293 (350)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             ccccccccHHHHHc
Confidence            84     7888764

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=6.4e-05  Score=76.43  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=27.4

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      +|.-.....+.|+||||+||++.|++||+.|.
T Consensus       198 PE~~~~~~~~~~~DiwSlG~il~el~~g~~pF  229 (362)
T d1q8ya_         198 PEVLLGAPWGCGADIWSTACLIFELITGDFLF  229 (362)
T ss_dssp             HHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hhhccccCCCccccccchHHHHHHHHHCCCCC
Confidence            45555667789999999999999999999984

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=2.1e-05  Score=79.49  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++||||+||++.||+||+.|.
T Consensus       194 ~~~~~~~DiwSlGvil~ell~g~~pf  219 (346)
T d1cm8a_         194 MRYTQTVDIWSVGCIMAEMITGKTLF  219 (346)
T ss_dssp             TCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             CCCCccchhhcchHHHHHHHHCcCCC
Confidence            34588999999999999999999995

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.25  E-value=5.1e-05  Score=67.28  Aligned_cols=41  Identities=15%  Similarity=0.195  Sum_probs=20.9

Q ss_pred             cCCCCCcEEECCCC-CCccc----CCccccCCCCCcEEEcCCCccc
Q 003931           99 TNLGKLEYLNLTEN-QFQGK----LSPNVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus        99 ~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n~~~  139 (785)
                      .+.+.|++|+|+++ .+...    +..++...++|++|++++|.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            44566777777653 34321    1123444455555555555554

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=1.6e-05  Score=79.52  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931          670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT  749 (785)
Q Consensus       670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~  749 (785)
                      +|+-.....+.++||||+||++.||+||+.|..-...   ......+....+.-+.... .+   +..+.-.|.+.+|++
T Consensus       174 PE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~---~~~~~~i~~~~~~~p~~~s-~~---~~dli~~~L~~dP~~  246 (337)
T d1o6la_         174 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---ERLFELILMEEIRFPRTLS-PE---AKSLLAGLLKKDPKQ  246 (337)
T ss_dssp             GGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTTSC-HH---HHHHHHHHTCSSTTT
T ss_pred             hhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH---HHHHHHHhcCCCCCCccCC-HH---HHHHHHhhccCCchh
Confidence            3555566678999999999999999999999530000   0000001111111011111 12   234556799999999


Q ss_pred             CCC
Q 003931          750 RPS  752 (785)
Q Consensus       750 Rp~  752 (785)
                      ||+
T Consensus       247 R~~  249 (337)
T d1o6la_         247 RLG  249 (337)
T ss_dssp             STT
T ss_pred             hcc
Confidence            996

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=4.9e-05  Score=76.58  Aligned_cols=27  Identities=22%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             cccccccceeeeehhhhhhhhCCCCCc
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPGE  702 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~~  702 (785)
                      ...+.|+||||+||++.||+||+.|.+
T Consensus       188 ~~~~~~~DiwSlG~il~eml~g~~pf~  214 (345)
T d1pmea_         188 KGYTKSIDIWSVGCILAEMLSNRPIFP  214 (345)
T ss_dssp             CSCSTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCCchhhhhccCceehHHhhCCCCCC
Confidence            345789999999999999999999953

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00014  Score=73.37  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=23.3

Q ss_pred             cccccccceeeeehhhhhhhhCCCCC
Q 003931          676 MRVTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       676 ~~~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      ...+.++||||+||++.||+||+.|.
T Consensus       194 ~~~~~~~DiwSlGv~l~~ll~g~~pF  219 (348)
T d2gfsa1         194 MHYNQTVDIWSVGCIMAELLTGRTLF  219 (348)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             ccCCcccchhhhhHHHHHHHhCCCCC
Confidence            34678999999999999999999984

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.36  E-value=0.00035  Score=61.62  Aligned_cols=12  Identities=8%  Similarity=0.180  Sum_probs=5.3

Q ss_pred             CCCCCCEEEccc
Q 003931          172 QLKNLQHLDLRM  183 (785)
Q Consensus       172 ~l~~L~~L~l~~  183 (785)
                      ..+.|++|+++.
T Consensus       130 ~n~~L~~L~l~~  141 (166)
T d1io0a_         130 KNTTLLKFGYHF  141 (166)
T ss_dssp             HCSSCCEEECCC
T ss_pred             hCCCcCEEeCcC
Confidence            344444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.34  E-value=0.00021  Score=63.06  Aligned_cols=41  Identities=12%  Similarity=0.114  Sum_probs=19.6

Q ss_pred             cCCCCCcEEECCC-CCCcccC----CccccCCCCCcEEEcCCCccc
Q 003931           99 TNLGKLEYLNLTE-NQFQGKL----SPNVSKLSNLIDLRLATNKFS  139 (785)
Q Consensus        99 ~~l~~L~~L~Ls~-n~i~~~~----~~~~~~l~~L~~L~L~~n~~~  139 (785)
                      .+.+.|++|++++ +.++...    ..++...++|++|++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            4556666666665 3343211    122334455555555555443

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=96.15  E-value=0.00054  Score=68.16  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             cccccceeeeehhhhhhhhCCCCC
Q 003931          678 VTDKCDVFSFGVVALEVMMGRHPG  701 (785)
Q Consensus       678 ~t~k~DVYSfGvvlLElltgk~p~  701 (785)
                      .+.++||||+||++.|+++|+.|.
T Consensus       207 ~~~~~DiwslG~~l~e~~~g~~pf  230 (328)
T d3bqca1         207 YDYSLDMWSLGCMLASMIFRKEPF  230 (328)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             CCcccchhhhhhhhHHhccCCCCC
Confidence            578999999999999999999984