Citrus Sinensis ID: 003934

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-----
MSLSQPTSAAETPAIQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENITASDLSTGLVKRCEELLQKLKSLEGSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHISSSRGEYKSLELGHESQAEGNENTAILSTHAMPKVSPEHDSSAMAEKDLCKDDSLRITVHGGGNVASSESPARHLESDGEQVNGTVIPHESISKSGYNSEGDVDMDVDMEVEDSVPEGNTRIGETSSAKDFATLEQPVQPNPPADHPSLTSEDVPVVPPPPDEEWIPPPPPDNEQVPPPPPDEPPEDSYNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQDSAGATVKEDGSAVCTGADMGSLGVPSTSVTIQAVATVSEKESVPSLSTTAVASAAAAATTSSAAKVQSKVRNKKRTVAVAPSLRSNKKVSSLVDKWKAAKEELNENEEDEPENAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGGDWREKVKRRRAQLAKEAAETPPEAEADQKQEKPDLVDLSKDLPSGWQAYWDESSKQIYYGNTITSKTTWTRPTK
cccccccccccccccEEEcccccccEEEEEcccccEEEEEcccccEEEEcccHHHHHHHHHcccccccccccccccccccccccEEccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHccccccccccHHHcccccEEEEEccccccEEEccccc
cccccccEcccccccEEEEEcccccEEEEEcccccEEEEEccccccccccccHcHcHHHccccccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHccccccccccccccEEEEEcccccccccccccccccEEcccccccccccccccEEHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHEEEEEEEHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEccccccccccccccccEEcEcccccccccccccccccccccccccEEEEEccccccccccccccccHcccccccccccccccccccccccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEEccEEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHcccccccEEEEEccccEEEEEcccccccccccccc
mslsqptsaaetpaiQVIGDVSSGWRMVLHEESKQYYYWNVetgetsweiPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDyyvtapiydgsidgnmiseskdahecgaqanerfegskgevmkygngtvGVSQVelsgtggvadsfsadgsligpgmhiqglmnneenitasdlsTGLVKRCEELLQKLKSLEGskahlqhhdwtsKYVLEVEIRLSDFKSLLAcgssilpfwlhSERQLQRLEGSVDEEIYQIAKSQVDEDMATHIsssrgeykslelghesqaegnentailsthampkvspehdssamaekdlckddslritvhgggnvassesparhlesdgeqvngtviphesisksgynsegdvdmdvdmevedsvpegntrigetssakdfatleqpvqpnppadhpsltsedvpvvppppdeewipppppdneqvpppppdeppedsynpttsyvenvqhhpymeqynipypdssfayyghtvtqipggnfygpadgsqvvphasiyygavpnsynetasvmvnpvtpvayyglqdgaitqdsagatvkedgsavctgadmgslgvpstsVTIQAVATVsekesvpslsTTAVASAAAAATTSSAAKVQSKVrnkkrtvavapslrsnkkVSSLVDKWKAAKEElneneedepenAYEILERKRQREIEEWRAQQIAsgeakdnanfqplggdwREKVKRRRAQLAKEAaetppeaeadqkqekpdlvdlskdlpsgwqaywdesskqiyygntitskttwtrptk
mslsqptsaaetpaiqviGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENITASDLSTGLVKRCEELLQKLKSLEgskahlqhhdwtskYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHISSSRGEYKSLELGHESQAEGNENTAILSTHAMPKVSPEHDSSAMAEKDLCKDDSLRITVHGggnvassesparhLESDGEQvngtviphesisksgynseGDVDMDVDMEVEDSVPEGNTRIGETSSAKDFATLEQPVQPNPPADHPSLTSEDVPVVPPPPDEEWIPPPPPDNEQVPPPPPDEPPEDSYNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQDSAGATVKEDGSAVCTGADMGSLGVPSTSVTIQAVATVSEKESVPSLSTTAVASAAAAattssaakvqskvrnkkrtvavapslrsnkkvsslVDKWKAAKeelneneedepenaYEILERKRQREIEEWRAQQiasgeakdnanfqplggdwreKVKRRRAQLAkeaaetppeaeadqkqekpdlVDLSKDLPSGWQAYWdesskqiyygntitskttwtrptk
MSLSQPTSAAETPAIQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENITASDLSTGLVKRCEELLQKLKSLEGSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHISSSRGEYKSLELGHESQAEGNENTAILSTHAMPKVSPEHDSSAMAEKDLCKDDSLRITVHGGGNVASSESPARHLESDGEQVNGTVIPHESISKSGYNSEGdvdmdvdmevedSVPEGNTRIGETSSAKDFATLEQPVQPNPPADHPSLTSedvpvvppppdeewipppppdneqvpppppdeppedSYNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQDSAGATVKEDGSAVCTGADMGSLGVPSTSVTIQAVATVSEKESVPSLsttavasaaaaattssaaKVQSKVRNKKRTVAVAPSLRSNKKVSSLVDkwkaakeelneneedepenayeILERKRQREIEEWRAQQIASGEAKDNANFQPLGGDWREKVKRRRAQLAKeaaetppeaeaDQKQEKPDLVDLSKDLPSGWQAYWDESSKQIYYGNTITSKTTWTRPTK
**************IQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDG*****************************YGNGTVGVSQVELSGTGGVA**F**DGSLIGPGMHIQGLMNN*ENITASDLSTGLVKRCEELLQKLKSLEGSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQI***************************************************************************************************************************************************************************************************************YVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQDS**********AVCTGADM**LG*****VTIQ*****************************************************************************************************************************************************************SGWQAYWDESSKQIYYGNTITSKT*******
**************IQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTE*********************************************************************************************************************************LVKRCEELLQKLK**************TSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHISS******************************************************************************************SKS*YN**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KDLPSGWQAYWDESSKQIYYGNTITSK********
***********TPAIQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENITASDLSTGLVKRCEELLQKLKSLEGSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHISSSRGEYKSLELGHESQAEGNENTAILSTHAM*************EKDLCKDDSLRITVHGGG******************VNGTVIPHESISKSGYNSEGDVDMDVDMEVEDSVPEGNTRIGETSSAKDFATLEQPVQPNPPADHPSLTSEDVPVVPPPPDEEWIPPPPP******************NPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQDSAGATVKEDGSAVCTGADMGSLGVPSTSVTIQAVAT******************************************VAPSLRSNKKVSSLVDKWKAAK************NAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGGDWREK***************************PDLVDLSKDLPSGWQAYWDESSKQIYYGNTITSK********
*****PTSAAETPAIQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTEL******************************D***TAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENITASDLSTGLVKRCEELLQKLKSLEGSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKS*************************************S***M************A*KDLCKDDSLRITVHGG***************************************DVDMDVDMEVED*VPEGNTR*G*****K**************************VVPPPPDEEWIPPPPPDNEQVPPPPPDEPPEDSYNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQD*******************************************************************SKVRNKKRTVAVAPSLRSNKKVSSLVDKWKAAKEELNEN******NAYEILERKRQREIEEWRAQQIASGEAK****FQPLGGDWREKVKRRRAQL******************KPDLVDLSKDLPSGWQAYWDESSKQIYYGNTI***********
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MSLSQPTSAAETPAIQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENITASDLSTGLVKRxxxxxxxxxxxxxxxxxxxxxDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHISSSRGEYKSLELGHESQAEGNENTAILSTHAMPKVSPEHDSSAMAEKDLCKDDSLRITVHGGGNVASSESPARHLESDGEQVNGTVIPHESISKSGYNSEGDVDMDVDMEVEDSVPEGNTRIGETSSAKDFATLEQPVQPNPPADHPSLTSEDVPVVPPPPDEEWIPPPPPDNEQVPPPPPDEPPEDSYNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQVVPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGAITQDSAGATVKEDGSAVCTGADMGSLGVPSTSVTIQAVATVSEKESVPSLSTTAVASAAAAATTSSAAKVQSKVRNKKRTVAVAPSLRSxxxxxxxxxxxxxxxxxxxxxEEDEPENAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGGDWREKVKRRRAQLAKEAAETPPEAEADQKQEKPDLVDLSKDLPSGWQAYWDESSKQIYYGNTITSKTTWTRPTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query785 2.2.26 [Sep-21-2011]
Q6ZQ031031 Formin-binding protein 4 yes no 0.086 0.065 0.442 1e-06
Q8N3X11017 Formin-binding protein 4 yes no 0.086 0.066 0.442 1e-06
>sp|Q6ZQ03|FNBP4_MOUSE Formin-binding protein 4 OS=Mus musculus GN=Fnbp4 PE=1 SV=2 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 652  SLVDKWKAAKEELNENEEDEPENAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGG 711
            SLV KW++ + EL+E +     ++ E  E   Q+ IEEW+ QQ+ SG A+ NANF+ L  
Sbjct: 959  SLVKKWQSIQRELDEEDNSS--SSEEDRESTAQKRIEEWKQQQLVSGLAERNANFEALPE 1016

Query: 712  DWREKVKRRR 721
            DWR ++KRR+
Sbjct: 1017 DWRARLKRRK 1026

Mus musculus (taxid: 10090)
>sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4 OS=Homo sapiens GN=FNBP4 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query785
255583509 964 conserved hypothetical protein [Ricinus 0.947 0.771 0.475 1e-167
356524389 926 PREDICTED: uncharacterized protein LOC10 0.932 0.790 0.460 1e-152
359494333 1552 PREDICTED: uncharacterized protein LOC10 0.963 0.487 0.466 1e-151
356569605 893 PREDICTED: uncharacterized protein LOC10 0.933 0.820 0.450 1e-146
147791678 993 hypothetical protein VITISV_026660 [Viti 0.932 0.737 0.427 1e-125
449463396 943 PREDICTED: uncharacterized protein LOC10 0.922 0.767 0.417 1e-121
449520094 943 PREDICTED: uncharacterized protein LOC10 0.923 0.768 0.416 1e-120
297834146770 hypothetical protein ARALYDRAFT_478706 [ 0.853 0.870 0.395 1e-119
79400098771 WW domain-containing protein [Arabidopsi 0.868 0.884 0.398 1e-105
238479758 892 WW domain-containing protein [Arabidopsi 0.866 0.762 0.399 1e-105
>gi|255583509|ref|XP_002532512.1| conserved hypothetical protein [Ricinus communis] gi|223527762|gb|EEF29864.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 401/844 (47%), Positives = 515/844 (61%), Gaps = 100/844 (11%)

Query: 1   MSLSQPTSAAETPAIQVIGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQTTEL 60
           + L++  S   TP  QV  DV SGWR+V+HEES QYYYWN ETGETSWE+P+VLAQTT L
Sbjct: 162 IDLAKQASVTGTPDAQVNADVCSGWRIVMHEESNQYYYWNTETGETSWEVPEVLAQTTHL 221

Query: 61  AADQRTNIIEDTQSTAVAEHECNSTIAVASDYYVTAPIYDGSIDGNMISESKDAHECGAQ 120
                T I+E   +  V  ++ +ST  +  D    A    GS+  +++S+S++ H  G Q
Sbjct: 222 IVPP-TEIME---TIPVDTNQSSSTSGIELDSSSAAASIGGSVSASLVSQSQEVHVNGPQ 277

Query: 121 ANERFEGSKGEVMKYGNGTVGVSQVELSGTGGVADSFSADGSLIGPGMHIQGLMNNEENI 180
            +E  E  KG+ +K  N    V Q E               +L    +   G   N+E  
Sbjct: 278 MSEWLEVHKGDSVKEKNSITDVCQSE------------PQSNLSAANVLCSGEATNDELE 325

Query: 181 TASDLSTGLVKRCEELLQKLKSLEGSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSI 240
              DL + L+++CE LL++LKSL+G  + LQ     SKY+LEV+IRLSD KSL +  SS+
Sbjct: 326 NGMDLPSNLMRQCECLLERLKSLKGYGSRLQCQGQMSKYILEVDIRLSDIKSLSSYASSL 385

Query: 241 LPFWLHSERQLQRLEGSVDEEIYQIA-KSQVDEDM-ATHISSSRGEYKSLEL-GHESQAE 297
           LPFW+HS+RQL++LE  ++ EIY +A  SQ+D+D+ AT  ++S  + KS E+ GH+  A+
Sbjct: 386 LPFWIHSQRQLKQLEDVINNEIYHLAVSSQMDDDVDATANAASNEKEKSCEIVGHDFDAD 445

Query: 298 GNEN---------TAILSTHAMPKVSPEHDSSAMAEKDLCKDDSLRITVHGGGNVASSES 348
           G EN         TA +   +   +  E+ ++ +       D+ L+     GG  AS   
Sbjct: 446 GCENSRKSELPNFTATVENDSHNDLPHENVNARLISSLGLSDEHLK-----GGAAAS--- 497

Query: 349 PARHLESDGEQVNGTVIPHESISKSGYNSEGDVDMDVDMEVEDSVPEGNTRIGETSSAKD 408
                    E+V+GT  P                MDVDMEV+D V  G T + + SS K 
Sbjct: 498 ---------EKVDGTAYPEPEFLPGEDVD-----MDVDMEVDDGVSAGITTVEDASSTKV 543

Query: 409 FATLEQPVQPNPPADHPSLTSEDVPVVPPPPDEEWIPPPPPDNEQVPPPPPDE------- 461
           FA + Q  +PN PA++ +L S D   VP PP+E+WIPPPPPD++QVPPPPPD        
Sbjct: 544 FAPVNQLSRPNAPAEYATLPSGDESTVPLPPEEDWIPPPPPDSDQVPPPPPDNEQIPPPP 603

Query: 462 ---PPEDSYNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQ 518
              PPE SY P  SY+E  Q  PY EQYN+PYPDS+F YYG TVT +P  N YG ADGSQ
Sbjct: 604 PDEPPESSYPPVQSYMEMGQPLPYAEQYNLPYPDSNFQYYGPTVT-VPTSNLYGHADGSQ 662

Query: 519 V-VPHASIYYGAVPNSYNETASVMVNPVTPVAYYGLQDGA--------ITQDS------- 562
           V + +AS+YY  V N+Y ETA ++V+PV PVAYY +QD +        I++ S       
Sbjct: 663 VAMTNASLYYEVVANTYAETAPIIVSPVDPVAYYNIQDASMVPLPAVSISKSSHLHDESC 722

Query: 563 --------------------AGATVKEDGSAVCTGADMGSLGVPSTSVTIQAVATVSEKE 602
                               A   ++ D SAV       S+GV S SV I+  A  + KE
Sbjct: 723 PMGFSTLASDQIRTGNDPIEAARKLELDVSAVAGKTVTASMGVASPSV-IETPAAANGKE 781

Query: 603 SVPSLSTTAVASAAAAATTSSAAKVQSKV-RNKKRTVAVAPSLRSNKKVSSLVDKWKAAK 661
           ++ + ST  V ++AA   T +A K QSKV R KKRTVAVA SLRSNKKVSSLVDKWKAAK
Sbjct: 782 NISAPSTNVVTASAAVPNTMTAPKGQSKVSRTKKRTVAVASSLRSNKKVSSLVDKWKAAK 841

Query: 662 EELNENEEDEPENAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGGDWREKVKRRR 721
           EELNENEEDEPENAYEILERKRQREIEEWRA+QIASGEAKDNANFQPLGGDWRE+VKRRR
Sbjct: 842 EELNENEEDEPENAYEILERKRQREIEEWRAKQIASGEAKDNANFQPLGGDWRERVKRRR 901

Query: 722 AQLAKEAAETPPEAEADQKQEKPDLVDLSKDLPSGWQAYWDESSKQIYYGNTITSKTTWT 781
           AQ AKEAA+ P EA     Q+  DL +LSK LPSGWQAYWDE+SKQ+YYGN +TS+T+W 
Sbjct: 902 AQAAKEAAQLPSEASIVANQQL-DLAELSKGLPSGWQAYWDEASKQVYYGNVVTSETSWI 960

Query: 782 RPTK 785
           +PTK
Sbjct: 961 KPTK 964

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356524389|ref|XP_003530811.1| PREDICTED: uncharacterized protein LOC100791890 [Glycine max] Back     alignment and taxonomy information
>gi|359494333|ref|XP_002267683.2| PREDICTED: uncharacterized protein LOC100249836 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569605|ref|XP_003552989.1| PREDICTED: uncharacterized protein LOC100805568 [Glycine max] Back     alignment and taxonomy information
>gi|147791678|emb|CAN72861.1| hypothetical protein VITISV_026660 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463396|ref|XP_004149420.1| PREDICTED: uncharacterized protein LOC101219916 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520094|ref|XP_004167069.1| PREDICTED: uncharacterized protein LOC101223441 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834146|ref|XP_002884955.1| hypothetical protein ARALYDRAFT_478706 [Arabidopsis lyrata subsp. lyrata] gi|297330795|gb|EFH61214.1| hypothetical protein ARALYDRAFT_478706 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79400098|ref|NP_187930.2| WW domain-containing protein [Arabidopsis thaliana] gi|332641796|gb|AEE75317.1| WW domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238479758|ref|NP_001154613.1| WW domain-containing protein [Arabidopsis thaliana] gi|332641797|gb|AEE75318.1| WW domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query785
TAIR|locus:2090064892 AT3G13225 [Arabidopsis thalian 0.380 0.335 0.422 1e-90
UNIPROTKB|E1C7161022 FNBP4 "Uncharacterized protein 0.053 0.041 0.547 2.6e-09
UNIPROTKB|F1MD781023 FNBP4 "Uncharacterized protein 0.053 0.041 0.523 2.9e-09
UNIPROTKB|Q8N3X11017 FNBP4 "Formin-binding protein 0.053 0.041 0.523 9.1e-09
MGI|MGI:18605131031 Fnbp4 "formin binding protein 0.053 0.040 0.523 1.9e-08
TAIR|locus:2090064 AT3G13225 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 563 (203.2 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 136/322 (42%), Positives = 173/322 (53%)

Query:   467 YNPTTSYVENVQHHPYMEQYNIPYPDSSFAYYGHTVTQIPGGNFYGPADGSQV-VPHASI 525
             Y    SY+   Q   Y  QYN+ YP+S++ Y  + VT  P   FYG  DGSQV +P ++ 
Sbjct:   589 YTVPQSYMH--QSADYATQYNLSYPESNYQYT-NAVTLAPNTQFYGHVDGSQVSLPQSTF 645

Query:   526 YYGAVPNSYNETASVMVNPVTPVAYYGLQDGA--ITQDSAGATVKEDGSAVCTGADMGSL 583
             YY  VP +   T  V        AYY     A      S+G     + S   +G    + 
Sbjct:   646 YYETVPGT---TEVVPAAASAGEAYYDFNGAAPLFPVISSG-----ESSLHHSGVGSANH 697

Query:   584 GVPSTSVTIQAVATVSEKESVPSLXXXXXXXXXXXXXXXXXXKVQSKV-RNKKRTVAVAP 642
              +P+ S T    ++ S   +                      K Q+KV R KK+TVA   
Sbjct:   698 HIPNNSSTAAVPSSRSNDSTEVGSSATASKSTDVTSGSSLLAKGQTKVKRTKKKTVAATS 757

Query:   643 SLRSNKKVSSLVDXXXXXXXXXXXXXXXXXXXXXXILERKRQREIEEWRAQQIASGEAKD 702
             +LRSNKKVSSLVD                      IL+RKR+REIEEW+++QIASGEAKD
Sbjct:   758 TLRSNKKVSSLVDKWKAAKEELNDSEEEEDDSE--ILDRKRKREIEEWKSRQIASGEAKD 815

Query:   703 NANFQPLGGDWREKVKRRRAQLAKXXXXXXXXXXXDQKQEKPDLVDLSKDLPSGWQAYWD 762
             NANFQPLGGDWREKVKR+R +  K            +KQ+KPDL  LS +LPS WQAYWD
Sbjct:   816 NANFQPLGGDWREKVKRKRERAEKSQKKD------PEKQQKPDLTKLSANLPSEWQAYWD 869

Query:   763 ESSKQIYYGNTITSKTTWTRPT 784
             ES+K++YYGNT TS+T+WTRPT
Sbjct:   870 ESTKKVYYGNTSTSQTSWTRPT 891
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|E1C716 FNBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MD78 FNBP4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N3X1 FNBP4 "Formin-binding protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1860513 Fnbp4 "formin binding protein 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query785
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 7e-06
pfam0039730 pfam00397, WW, WW domain 1e-05
pfam0039730 pfam00397, WW, WW domain 2e-05
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 2e-05
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 2e-05
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 3e-05
pfam10152147 pfam10152, DUF2360, Predicted coiled-coil domain-c 6e-04
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information 
 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 754 PSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784
           P GW+  WD    ++YY N  T +T W  P 
Sbjct: 1   PPGWEERWDPD-GRVYYYNHNTKETQWEDPR 30

Length = 31
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 785
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.99
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.7
cd0020131 WW Two conserved tryptophans domain; also known as 98.46
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.25
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 97.77
cd0020131 WW Two conserved tryptophans domain; also known as 97.63
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.59
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.49
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 92.25
COG5104 590 PRP40 Splicing factor [RNA processing and modifica 91.48
KOG1891 271 consensus Proline binding protein WW45 [General fu 90.96
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 90.69
PRK097521250 adhesin; Provisional 89.39
KOG4031216 consensus Vesicle coat protein clathrin, light cha 89.04
KOG1891 271 consensus Proline binding protein WW45 [General fu 87.34
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 87.14
PRK097521250 adhesin; Provisional 85.93
COG5104590 PRP40 Splicing factor [RNA processing and modifica 83.66
PRK15319 2039 AIDA autotransporter-like protein ShdA; Provisiona 81.83
KOG1925 817 consensus Rac1 GTPase effector FHOS [Signal transd 80.04
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information 
Probab=98.99  E-value=2.2e-10  Score=83.88  Aligned_cols=31  Identities=45%  Similarity=1.021  Sum_probs=30.0

Q ss_pred             CCccccccccCCCCceEEEeccccceeccCC
Q 003934          753 LPSGWQAYWDESSKQIYYGNTITSKTTWTRP  783 (785)
Q Consensus       753 LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP  783 (785)
                      ||+||++++|+.+|++||+|..|++|+|+||
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            8999999999779999999999999999998

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1891 consensus Proline binding protein WW45 [General function prediction only] Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1891 consensus Proline binding protein WW45 [General function prediction only] Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query785
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-06
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 6e-06
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 9e-06
1ymz_A43 CC45; artificial protein, computational design, un 1e-05
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 1e-05
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 2e-05
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 3e-05
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 4e-05
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 5e-05
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 5e-05
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng 1e-04
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 1e-04
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 2e-04
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 4e-04
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 2e-04
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 2e-04
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 2e-04
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 2e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 3e-04
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 3e-04
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 3e-04
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 5e-04
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 6e-04
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 7e-04
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 8e-04
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 83/561 (14%), Positives = 159/561 (28%), Gaps = 179/561 (31%)

Query: 35  QYYYWNVETGETSW---EIPQVLAQTTELAADQRTNIIEDTQSTAVAEHECNSTIAVASD 91
            +++ + ETGE  +   +I  V         +     ++D   + +++ E +  I     
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 92  YYVTAPIYDGSIDGNMISESKDAHECGAQANERFEGSKGEVMK--YGNGTVGVSQVELSG 149
              T  ++           SK       +  ++F     EV++  Y              
Sbjct: 61  VSGTLRLFW-------TLLSK-----QEEMVQKF---VEEVLRINYK------------- 92

Query: 150 TGGVADSFSADGSLIGPGMHIQGLMNNEENITASD---LSTGLVKRCEELLQKLKS-LEG 205
              +      +     P M +  +   + +   +D    +   V R  +   KL+  L  
Sbjct: 93  --FLMSPIKTE--QRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALL- 145

Query: 206 SKAHLQHHDW--------TSKYVLEVEIRLSDFKSLLACGSSILPFWL-----HSER--- 249
               L+            + K  + +++    +K        I  FWL     +S     
Sbjct: 146 ---ELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKI--FWLNLKNCNSPETVL 199

Query: 250 -QLQRLEGSVDEEIYQIAKSQVDEDMATHISSSRGEYKSLELGHESQAEGNENTAILSTH 308
             LQ+L       +YQI  +      + H S+ +    S++          E   +L + 
Sbjct: 200 EMLQKL-------LYQIDPNWTSR--SDHSSNIKLRIHSIQ---------AELRRLLKSK 241

Query: 309 AMPK-------VSPEHDSSAMAEKDL-CKDDSLRITVHGGGNVASSESPARHLESDGEQV 360
                      V    ++ A    +L CK   L  T      V    S A       +  
Sbjct: 242 PYENCLLVLLNVQ---NAKAWNAFNLSCK--ILLTT--RFKQVTDFLSAATTTHISLDHH 294

Query: 361 NGTVIPHES---ISKSGYNSEGDVDMDVDM---EVEDSVPEGNTRIGETSSAKDF-ATLE 413
           + T+ P E    + K        +D        EV  + P   + I E  S +D  AT +
Sbjct: 295 SMTLTPDEVKSLLLKY-------LDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWD 345

Query: 414 QPVQPNPPADHPSLTSEDVPVVPPP------------PDEEWIPPPPPDNEQV-----PP 456
                N      ++    + V+ P             P    IP        +       
Sbjct: 346 NWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP------TILLSLIWFD 398

Query: 457 PPPDEPPED------------SYNPTTSYVENVQ-------------HHPYMEQYNI--- 488
               +                    +T  + ++              H   ++ YNI   
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 489 --------PYPDS-SFAYYGH 500
                   PY D   +++ GH
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGH 479
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43 Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37 Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46 Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41 Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42 Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50 Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54 Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46 Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109 Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query785
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 98.95
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 98.94
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.93
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.92
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 98.9
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 98.9
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 98.89
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 98.82
1ymz_A43 CC45; artificial protein, computational design, un 98.8
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.79
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 98.79
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 98.78
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 98.77
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 98.77
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 98.75
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 98.74
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 98.72
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 98.72
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 98.72
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 98.71
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 98.68
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 98.65
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 98.63
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 98.61
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 98.57
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 98.53
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 98.53
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 98.51
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 98.5
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 98.49
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 98.46
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 98.38
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 98.35
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 98.3
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 98.3
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 98.29
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 98.24
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 98.24
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 98.07
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.05
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 97.97
2jxw_A75 WW domain-binding protein 4; WW domain containing 97.93
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 97.83
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 97.81
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 97.75
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 97.7
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 97.67
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 97.6
2jxw_A75 WW domain-binding protein 4; WW domain containing 97.58
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 97.51
1ymz_A43 CC45; artificial protein, computational design, un 97.49
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 97.44
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 97.44
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 97.4
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 97.37
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 97.24
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 97.12
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 97.05
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 97.05
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 97.03
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 97.03
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 96.99
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 96.98
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 96.42
2dk7_A73 Transcription elongation regulator 1; structural g 96.41
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 96.28
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 96.23
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 96.08
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 95.99
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 95.89
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 95.7
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 95.66
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 95.65
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 95.58
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 95.57
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 95.43
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 95.28
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 94.88
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 94.61
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 94.33
2dk7_A73 Transcription elongation regulator 1; structural g 94.3
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 89.44
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 84.41
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 82.86
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
Probab=98.95  E-value=3.3e-10  Score=83.76  Aligned_cols=34  Identities=41%  Similarity=0.812  Sum_probs=31.5

Q ss_pred             CCCCCccccccccCCCCceEEEeccccceeccCCC
Q 003934          750 SKDLPSGWQAYWDESSKQIYYGNTITSKTTWTRPT  784 (785)
Q Consensus       750 s~~LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~  784 (785)
                      +.+||+||++++|+ +|++||+|+.|++|+|++|.
T Consensus         1 s~~LP~gW~~~~~~-~G~~Yy~n~~t~~t~W~~P~   34 (37)
T 1e0m_A            1 SMGLPPGWDEYKTH-NGKTYYYNHNTKTSTWTDPR   34 (37)
T ss_dssp             CCCSCTTEEEEECS-SCCEEEEETTTTEEESSCTT
T ss_pred             CCCCCCCcEEEECC-CCCEEEEECCCCCeeeeCcC
Confidence            45899999999995 69999999999999999996
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 785
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 1e-09
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 1e-05
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 5e-05
d2jmfa133 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII 6e-05
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 9e-05
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 1e-04
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 2e-04
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 2e-04
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 5e-04
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 7e-04
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 8e-04
d1jvra_137 a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell 0.001
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 0.004
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 0.004
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 0.004
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 753 LPSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784
           LP GW+     SS ++YY N IT+ + W RP+
Sbjct: 2   LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query785
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 99.22
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 98.88
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 98.74
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 98.72
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 98.69
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.39
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 98.34
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 98.24
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.19
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.13
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.02
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 97.95
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 97.94
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.55
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 97.54
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.45
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 97.31
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 96.82
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 96.37
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 96.24
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 96.01
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 92.66
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 81.9
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.8e-12  Score=94.71  Aligned_cols=33  Identities=42%  Similarity=0.902  Sum_probs=32.2

Q ss_pred             CCccccccccCCCCceEEEeccccceeccCCCC
Q 003934          753 LPSGWQAYWDESSKQIYYGNTITSKTTWTRPTK  785 (785)
Q Consensus       753 LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~~  785 (785)
                      ||+||++++|+++|++||+|+.|++|+|+||++
T Consensus         2 LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt~   34 (34)
T d1pina1           2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPSG   34 (34)
T ss_dssp             CCTTEEEEECTTSCCEEEEETTTCCEESSCSCC
T ss_pred             cCCCcEEEECCCCCCEEEEECCCCCEEccCCCC
Confidence            999999999999999999999999999999985
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure