Citrus Sinensis ID: 003959
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | 2.2.26 [Sep-21-2011] | |||||||
| Q96JB2 | 828 | Conserved oligomeric Golg | yes | no | 0.851 | 0.805 | 0.356 | 1e-124 | |
| Q8CI04 | 820 | Conserved oligomeric Golg | yes | no | 0.931 | 0.889 | 0.337 | 1e-122 | |
| Q16ZN9 | 899 | Conserved oligomeric Golg | N/A | no | 0.945 | 0.823 | 0.308 | 1e-111 | |
| Q961G1 | 905 | Conserved oligomeric Golg | yes | no | 0.858 | 0.742 | 0.308 | 1e-108 | |
| Q29N70 | 914 | Conserved oligomeric Golg | yes | no | 0.859 | 0.736 | 0.302 | 1e-106 | |
| Q54TT4 | 925 | Conserved oligomeric Golg | yes | no | 0.941 | 0.796 | 0.296 | 1e-103 | |
| P40094 | 801 | Conserved oligomeric Golg | yes | no | 0.659 | 0.644 | 0.254 | 5e-40 | |
| Q9Y7Z4 | 735 | Conserved oligomeric Golg | yes | no | 0.651 | 0.693 | 0.237 | 7e-37 |
| >sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3 | Back alignment and function desciption |
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Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/730 (35%), Positives = 404/730 (55%), Gaps = 63/730 (8%)
Query: 93 QFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVA 152
QF++WF L+ M + KYR + L G + CD IL V+ L LQ Q+ V+
Sbjct: 107 QFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQYLFVS 166
Query: 153 TKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLL 212
KT TLH+AC++L+ E+ L++ AE +Q KL YF+ELE I SP ++V + F +L
Sbjct: 167 NKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSDGFIPML 226
Query: 213 KRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSG 272
+LD+CI Y+ +P + + +YLLKF+Q S+AL +++++ ++ L++ +SQ+ ++
Sbjct: 227 AKLDDCITYISSHPNFKDYPIYLLKFKQCLSKALHLMKTYTVNTLQTLTSQL---LKRDP 283
Query: 273 GSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQILEECHKLYCEQRLS 331
S + +L YV+F+AAA +++ ++E+IE RS K EY Q+L + H+ Y +QR
Sbjct: 284 SSVPNADNAF--TLFYVKFRAAAPKVRTLIEQIELRSEKIPEYQQLLNDIHQCYLDQREL 341
Query: 332 LVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPL 389
L+ + ++E + + +L RSGCA+++ VCQ EHQL++ FF ++ S L L
Sbjct: 342 LLGPSIACTVAELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFF---TKPTSKLDEL 398
Query: 390 IDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILA 449
++ L LYD+ RP +IH +++ L EL ILK EVL + + +E L ++++L
Sbjct: 399 LEKLCVSLYDVFRPLIIHVIHLETLSELCGILKNEVLEDHVQNNAEQLGAFAAGVKQMLE 458
Query: 450 DVHERLTFRARTHIRDEIANYIPSDEDLNYPSKL-------------------------- 483
DV ERL +R +I+ +I Y P+ DL YP KL
Sbjct: 459 DVQERLVYRTHIYIQTDITGYKPAPGDLAYPDKLVMMEQIAQSLKDEQKKVPSEASFSDV 518
Query: 484 --EQSAGTKLETTPADE--NP---------DVYKTWYPPLEKTVSCLSKLYQCLEQAVFT 530
E+ L + + E NP D++ WYP + +T+ CLSKLY+C+++AVF
Sbjct: 519 HLEEGESNSLTKSGSTESLNPRPQTTISPADLHGMWYPTVRRTLVCLSKLYRCIDRAVFQ 578
Query: 531 GLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELD 590
GL+QEA+ C +S+ AS+ I+K T +DGQLFLIK+LLILREQIAPF EF++ LD
Sbjct: 579 GLSQEALSACIQSLLGASESISKNKTQIDGQLFLIKHLLILREQIAPFHTEFTIKEISLD 638
Query: 591 FSHLLEHLRRILRGQA--SLFDWSRSTSLARTL---SPRVLESQIDAKKELEKSLKATCE 645
+ +IL F + + +L L +P + E +D+KK++++ LK+ CE
Sbjct: 639 LKKTRDAAFKILNPMTVPRFFRLNSNNALIEFLLEGTPEIREHYLDSKKDVDRHLKSACE 698
Query: 646 EFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELV 705
+FI TKL V+ + F+ KV+A+K S G L Q +A P KV +L
Sbjct: 699 QFIQQQTKLFVEQLEEFMTKVSALKTMASQGGPKYT--------LSQQPWAQPAKVNDLA 750
Query: 706 HKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQS 765
I+ +LP + M LYL N T ILFKPV+ NI + + +LLK E+ PE+
Sbjct: 751 ATAYKTIKTKLPVTLRSMSLYLSNKDTEFILFKPVRNNIQQVFQKFHALLKEEFSPEDIQ 810
Query: 766 IINMVSMPDL 775
II SM L
Sbjct: 811 IIACPSMEQL 820
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Involved in ER-Golgi transport. Homo sapiens (taxid: 9606) |
| >sp|Q8CI04|COG3_MOUSE Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus GN=Cog3 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q16ZN9|COG3_AEDAE Conserved oligomeric Golgi complex subunit 3 OS=Aedes aegypti GN=Cog3 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q961G1|COG3_DROME Conserved oligomeric Golgi complex subunit 3 OS=Drosophila melanogaster GN=Cog3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29N70|COG3_DROPS Conserved oligomeric Golgi complex subunit 3 OS=Drosophila pseudoobscura pseudoobscura GN=Cog3 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q54TT4|COG3_DICDI Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium discoideum GN=cog3 PE=3 SV=1 | Back alignment and function description |
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| >sp|P40094|COG3_YEAST Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COG3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y7Z4|COG3_SCHPO Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cog3 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| 359484460 | 783 | PREDICTED: conserved oligomeric Golgi co | 0.998 | 0.998 | 0.855 | 0.0 | |
| 297839205 | 784 | hypothetical protein ARALYDRAFT_895203 [ | 1.0 | 0.998 | 0.821 | 0.0 | |
| 30698937 | 784 | sec34-like protein [Arabidopsis thaliana | 1.0 | 0.998 | 0.817 | 0.0 | |
| 22654989 | 784 | At1g73430/T9L24_16 [Arabidopsis thaliana | 1.0 | 0.998 | 0.816 | 0.0 | |
| 356547986 | 783 | PREDICTED: conserved oligomeric Golgi co | 0.991 | 0.991 | 0.810 | 0.0 | |
| 356565620 | 782 | PREDICTED: LOW QUALITY PROTEIN: conserve | 0.991 | 0.992 | 0.806 | 0.0 | |
| 357479305 | 783 | Conserved oligomeric Golgi complex subun | 0.991 | 0.991 | 0.794 | 0.0 | |
| 357479307 | 781 | Conserved oligomeric Golgi complex subun | 0.988 | 0.991 | 0.792 | 0.0 | |
| 449449220 | 779 | PREDICTED: conserved oligomeric Golgi co | 0.994 | 1.0 | 0.773 | 0.0 | |
| 414870282 | 782 | TPA: hypothetical protein ZEAMMB73_55010 | 0.991 | 0.992 | 0.757 | 0.0 |
| >gi|359484460|ref|XP_002273836.2| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Vitis vinifera] gi|297738499|emb|CBI27744.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1392 bits (3603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/784 (85%), Positives = 728/784 (92%), Gaps = 2/784 (0%)
Query: 1 MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQE 60
MA K AS ++LPKS A+S+GYNFASTWEQNAPL+EQQQAAI +L H VAERPFP NL+ E
Sbjct: 1 MATKPAS-ATLPKSAAISKGYNFASTWEQNAPLTEQQQAAIATLSHAVAERPFPANLSHE 59
Query: 61 HVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTL 120
H+ G++NGLSV TKD+++ +S AIE VLVNTNQFY WFTDLE AMKSETEEKYRHYVNTL
Sbjct: 60 HISGRENGLSVNTKDNTWEDSGAIETVLVNTNQFYKWFTDLESAMKSETEEKYRHYVNTL 119
Query: 121 MGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180
RIQTCDDIL QVD TLDLFNELQLQH AVATKTKTLHDACDRL++EKQRLIEFAEA++
Sbjct: 120 TERIQTCDDILHQVDATLDLFNELQLQHQAVATKTKTLHDACDRLLVEKQRLIEFAEALR 179
Query: 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQ 240
SKL YFDELEN+A SFYSPNMNVGN NF LLKRLDECI YVE NPQYAESSVYL+KFRQ
Sbjct: 180 SKLNYFDELENVATSFYSPNMNVGNENFLPLLKRLDECISYVESNPQYAESSVYLVKFRQ 239
Query: 241 LQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKP 300
LQSRALGMIRSHV+SVLKSASSQVQAAIRSSGGSK +VSE VEAS+IYVRFKAAASELKP
Sbjct: 240 LQSRALGMIRSHVVSVLKSASSQVQAAIRSSGGSKAAVSESVEASVIYVRFKAAASELKP 299
Query: 301 VLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAY 360
+LE+IESRSS+KEYVQIL ECH+LYCEQR SL++GIV QRISEF+KKE LPSLTRSGCAY
Sbjct: 300 LLEDIESRSSRKEYVQILSECHRLYCEQRFSLIRGIVHQRISEFAKKEALPSLTRSGCAY 359
Query: 361 LMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDI 420
LMQVCQLEHQLFDHFFPSSSEDIS+LAPLIDPL T+LYD LRPKLIHETN+D LCEL+DI
Sbjct: 360 LMQVCQLEHQLFDHFFPSSSEDISNLAPLIDPLCTYLYDTLRPKLIHETNLDFLCELIDI 419
Query: 421 LKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 480
LKVEVLGEQ+SRR ESLAGLRPTL RILADVHERLTFRARTHIRDEIANY+PS++DL+YP
Sbjct: 420 LKVEVLGEQISRRGESLAGLRPTLHRILADVHERLTFRARTHIRDEIANYLPSEDDLDYP 479
Query: 481 SKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVC 540
+KLEQSA +K TT ADENPDV+KTWYPPLEKT+SCLSKLY+CLE AVFTGLAQEAVEVC
Sbjct: 480 AKLEQSAESKSGTTSADENPDVFKTWYPPLEKTLSCLSKLYRCLEPAVFTGLAQEAVEVC 539
Query: 541 SESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRR 600
S SIQKASKL+ KRS+PMDGQLFLIK+LLILREQIAPFDIEFSVTHKELDFSHLLEHLRR
Sbjct: 540 SLSIQKASKLVVKRSSPMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRR 599
Query: 601 ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPML 660
ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIM+VTKLVVDPML
Sbjct: 600 ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMSVTKLVVDPML 659
Query: 661 SFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVM 720
SFV KVTAVKVALSSG+QNQ +DS+MAKPLKDQAFATPDKVAELV KV+A++QQELP VM
Sbjct: 660 SFVTKVTAVKVALSSGSQNQKLDSVMAKPLKDQAFATPDKVAELVQKVSASLQQELPKVM 719
Query: 721 AKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEE-QSIINMVSMPDLQAQL 779
KMKLYLQNPSTRTILFKP+KTNIVEAHIQVQSLLK+EY PEE QS INMVS+ DLQAQL
Sbjct: 720 EKMKLYLQNPSTRTILFKPIKTNIVEAHIQVQSLLKSEYTPEEVQSTINMVSIQDLQAQL 779
Query: 780 DSLL 783
D LL
Sbjct: 780 DHLL 783
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839205|ref|XP_002887484.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata] gi|297333325|gb|EFH63743.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30698937|ref|NP_177485.2| sec34-like protein [Arabidopsis thaliana] gi|186495067|ref|NP_001117595.1| sec34-like protein [Arabidopsis thaliana] gi|332197338|gb|AEE35459.1| sec34-like protein [Arabidopsis thaliana] gi|332197339|gb|AEE35460.1| sec34-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|22654989|gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356547986|ref|XP_003542385.1| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356565620|ref|XP_003551037.1| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357479305|ref|XP_003609938.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355510993|gb|AES92135.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357479307|ref|XP_003609939.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355510994|gb|AES92136.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449449220|ref|XP_004142363.1| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|414870282|tpg|DAA48839.1| TPA: hypothetical protein ZEAMMB73_550102 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| TAIR|locus:2206890 | 784 | AT1G73430 "AT1G73430" [Arabido | 1.0 | 0.998 | 0.817 | 0.0 | |
| UNIPROTKB|J9P4I0 | 830 | COG3 "Uncharacterized protein" | 0.572 | 0.539 | 0.337 | 2.8e-122 | |
| RGD|1304555 | 828 | Cog3 "component of oligomeric | 0.600 | 0.567 | 0.331 | 1.5e-121 | |
| ZFIN|ZDB-GENE-050913-26 | 824 | cog3 "component of oligomeric | 0.490 | 0.466 | 0.387 | 3.6e-120 | |
| UNIPROTKB|Q96JB2 | 828 | COG3 "Conserved oligomeric Gol | 0.593 | 0.561 | 0.327 | 4.6e-120 | |
| UNIPROTKB|F1LLY2 | 802 | Cog3 "Protein Cog3" [Rattus no | 0.600 | 0.586 | 0.331 | 3.7e-118 | |
| MGI|MGI:2450151 | 820 | Cog3 "component of oligomeric | 0.568 | 0.542 | 0.337 | 7.6e-118 | |
| UNIPROTKB|E1BGA6 | 832 | COG3 "Uncharacterized protein" | 0.595 | 0.560 | 0.334 | 1.6e-117 | |
| UNIPROTKB|E2RN33 | 833 | COG3 "Uncharacterized protein" | 0.572 | 0.537 | 0.337 | 6e-116 | |
| UNIPROTKB|Q16ZN9 | 899 | Cog3 "Conserved oligomeric Gol | 0.569 | 0.496 | 0.327 | 2.1e-111 |
| TAIR|locus:2206890 AT1G73430 "AT1G73430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3273 (1157.2 bits), Expect = 0., P = 0.
Identities = 641/784 (81%), Positives = 710/784 (90%)
Query: 1 MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQE 60
MA K+AS SSLPKSGA+S+GYNFASTWEQ+APL+EQQQAAI SL H VAERPFP NL E
Sbjct: 1 MATKAASSSSLPKSGAISKGYNFASTWEQSAPLTEQQQAAIVSLSHAVAERPFPANLVHE 60
Query: 61 HVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTL 120
HV +NGLSV+ +D G+S AIEAVLVNTNQFY WFTDLE AMKSETEEKYRHYV+TL
Sbjct: 61 HVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLESAMKSETEEKYRHYVSTL 120
Query: 121 MGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180
RIQTCD+IL QVD TLDLFNELQLQH V TKTKTLHDACDRL++EKQ+L+EFAEA++
Sbjct: 121 TERIQTCDNILHQVDETLDLFNELQLQHQGVTTKTKTLHDACDRLLMEKQKLMEFAEALR 180
Query: 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQ 240
SKL YFDELEN++++FYSPNMNV N NF LLKRLDECI Y+E NPQYAESSVYLLKFRQ
Sbjct: 181 SKLNYFDELENVSSNFYSPNMNVSNSNFLPLLKRLDECISYIEDNPQYAESSVYLLKFRQ 240
Query: 241 LQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKP 300
LQSRALGMIR+++L+VLK+A+SQVQAA R +GG+KTSVSEGVEAS+IYVRFKAAA+ELKP
Sbjct: 241 LQSRALGMIRTYILAVLKTAASQVQAAFRGTGGNKTSVSEGVEASVIYVRFKAAANELKP 300
Query: 301 VLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAY 360
VLEEIESRS++KEYVQIL ECH+LYCEQRLSLVKGIV QR+S+F+KKE LPSLTRSGCAY
Sbjct: 301 VLEEIESRSARKEYVQILAECHRLYCEQRLSLVKGIVHQRVSDFAKKEALPSLTRSGCAY 360
Query: 361 LMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDI 420
LMQVC +EHQLF HFFP+SSE++SSLAPL+DPLST+LYDILRPKLIHE N+DLLCELV I
Sbjct: 361 LMQVCHMEHQLFTHFFPASSEEVSSLAPLVDPLSTYLYDILRPKLIHEANIDLLCELVHI 420
Query: 421 LKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 480
LKVEVLG+Q +R+SE LAGLRPTL+RILADV+ERLTFRART+IRDEIANY PSDEDL+YP
Sbjct: 421 LKVEVLGDQSARQSEPLAGLRPTLQRILADVNERLTFRARTYIRDEIANYTPSDEDLDYP 480
Query: 481 SKLEQSAGTKLETTPAD-ENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEV 539
+KLE S T ET D EN DV+KTWYPPLEKT+SCLSKLY+CLEQAVFTGLAQEAVEV
Sbjct: 481 AKLEGSPNTTSETDLRDDENADVFKTWYPPLEKTLSCLSKLYRCLEQAVFTGLAQEAVEV 540
Query: 540 CSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLR 599
CS SIQKASKLI KRST MDGQLFLIK+LLILREQIAPFDIEFSVTHKELDFSHLLEHLR
Sbjct: 541 CSLSIQKASKLIIKRSTTMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLR 600
Query: 600 RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPM 659
RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEK LK TCEEFIM+VTKLVVDPM
Sbjct: 601 RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKCLKTTCEEFIMSVTKLVVDPM 660
Query: 660 LSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPV 719
LSFV KVTA+KVALSSG QN VDS+MAKPLK+QAFATPDKV ELV KV AAIQQEL P+
Sbjct: 661 LSFVTKVTAIKVALSSGTQNHKVDSVMAKPLKEQAFATPDKVVELVQKVYAAIQQELLPI 720
Query: 720 MAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQSIINMVSMPDLQAQL 779
+AKMKLYLQNPSTRTILFKP+KTNIVEAH QV+SLLKAEY EEQ+ INM+S+ DLQ QL
Sbjct: 721 LAKMKLYLQNPSTRTILFKPIKTNIVEAHTQVESLLKAEYSAEEQANINMISIQDLQTQL 780
Query: 780 DSLL 783
D+ L
Sbjct: 781 DNFL 784
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| UNIPROTKB|J9P4I0 COG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| RGD|1304555 Cog3 "component of oligomeric golgi complex 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050913-26 cog3 "component of oligomeric golgi complex 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96JB2 COG3 "Conserved oligomeric Golgi complex subunit 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LLY2 Cog3 "Protein Cog3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:2450151 Cog3 "component of oligomeric golgi complex 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BGA6 COG3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RN33 COG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q16ZN9 Cog3 "Conserved oligomeric Golgi complex subunit 3" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8CI04 | COG3_MOUSE | No assigned EC number | 0.3370 | 0.9310 | 0.8890 | yes | no |
| Q96JB2 | COG3_HUMAN | No assigned EC number | 0.3561 | 0.8518 | 0.8055 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 783 | |||
| pfam04136 | 157 | pfam04136, Sec34, Sec34-like family | 5e-32 |
| >gnl|CDD|112929 pfam04136, Sec34, Sec34-like family | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 5e-32
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171
+N L CD IL Q + L+ ++ V+ KT L +AC++L E+ R
Sbjct: 1 DAEKKINYLQTFTNICDQILGQTNNAESTLLSLKEKYEFVSKKTSELSEACEQLSTEQMR 60
Query: 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAES 231
L E A+ +Q L YF LE + SP ++V + +F L +LD CI+Y+E NP + +S
Sbjct: 61 LSELADGIQKGLTYFAPLEELNRVLRSPTLSVASVSFKEHLTKLDTCIMYIEENPDFKDS 120
Query: 232 SVYLLKFRQLQSRALGMIRSHVLSVLKSASSQV 264
YL K++Q S+A+ + + + + ++K + QV
Sbjct: 121 PHYLGKYKQCLSKAMDLFKPYFIRIIKQTTDQV 153
|
Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tether vesicles to the Golgi. Length = 157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| KOG2604 | 733 | consensus Subunit of cis-Golgi transport vesicle t | 100.0 | |
| PF04136 | 157 | Sec34: Sec34-like family ; InterPro: IPR007265 Sec | 100.0 | |
| PF06419 | 618 | COG6: Conserved oligomeric complex COG6; InterPro: | 99.32 | |
| PF09763 | 701 | Sec3_C: Exocyst complex component Sec3; InterPro: | 98.35 | |
| KOG3758 | 655 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG2604 | 733 | consensus Subunit of cis-Golgi transport vesicle t | 96.59 | |
| PF04129 | 508 | Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V | 96.45 | |
| PF03081 | 371 | Exo70: Exo70 exocyst complex subunit; InterPro: IP | 90.18 | |
| KOG1961 | 683 | consensus Vacuolar sorting protein VPS52/suppresso | 87.4 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 83.78 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 80.1 |
| >KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-144 Score=1204.25 Aligned_cols=718 Identities=41% Similarity=0.663 Sum_probs=653.8
Q ss_pred CCCcccchhhchHhhhHhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCcchhhhhccCh
Q 003959 12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT 91 (783)
Q Consensus 12 ~~~~~~~~~~~~~~~We~~apLs~~q~~~i~~l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (783)
+..+|.++.+.....|+..|||+|.|+..+..+.++..++|-|+.++.++.+.... .|-++| ..++.++
T Consensus 3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~~------~d~~l~-----~~~~~~~ 71 (733)
T KOG2604|consen 3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLTS------QDISLG-----EENLTNT 71 (733)
T ss_pred chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCCC------CCccCC-----cccccch
Confidence 34567777888888888899999999999999999999999999998775321111 123333 4678999
Q ss_pred HHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003959 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171 (783)
Q Consensus 92 ~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~ 171 (783)
.+|+.||+++...|...++.+|+.|+++|+...++|+.+|+|++++++.|.+|..+|++|+.||++||++||+|+.||.+
T Consensus 72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k 151 (733)
T KOG2604|consen 72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK 151 (733)
T ss_pred hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHH
Q 003959 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRS 251 (783)
Q Consensus 172 L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~ 251 (783)
|.++|+.|+.+|+||++||.++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||+|||+|||+
T Consensus 152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~ 231 (733)
T KOG2604|consen 152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT 231 (733)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhh
Q 003959 252 HVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLS 331 (783)
Q Consensus 252 ~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~ 331 (783)
|++|.|+.++++|.++=++ + ....+..++++|+||.++|+++||++++||+|+.++||.++|.+||+.||.+|.+
T Consensus 232 y~~~vlkq~t~q~l~~~~~--~---~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~ 306 (733)
T KOG2604|consen 232 YFTNVLKQTTSQVLKRSKN--M---NPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLR 306 (733)
T ss_pred HHHHHHHHHHHHHhccCCC--C---CCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998766221 1 1223677899999999999999999999999998899999999999999999999
Q ss_pred hhhHHHHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCccchhchhhhHHHHHHHHHHhhcccccccCCH
Q 003959 332 LVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNV 411 (783)
Q Consensus 332 LL~p~i~~~l~e~~~~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~~~~l~~~le~Lc~~LYd~lRp~Ii~e~~L 411 (783)
|++|+|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+ ...+..|+++||.++||..||+|+|+.|+
T Consensus 307 ll~pvi~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~---~f~~~~~~~~lc~~lyd~~r~~ilh~~~l 383 (733)
T KOG2604|consen 307 LLKPVIDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMG---DFKLMHYLENLCQSLYDNSRPLILHEKHL 383 (733)
T ss_pred ccCcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCC---chHHHHHHHHhchHhhcchhhHHHHHHHH
Confidence 999999999999998889999999999999999999999999999987 36799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCCchhhhhccCCCC
Q 003959 412 DLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKL 491 (783)
Q Consensus 412 ~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~Y~Ps~~DL~yP~kL~~~~~~~~ 491 (783)
++||+.|++++.++++++.+ ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......
T Consensus 384 ~tL~e~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~ 460 (733)
T KOG2604|consen 384 ETLCEVCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQ 460 (733)
T ss_pred HHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHh
Confidence 99999999999999988765 333378999999999999999999999999999999999999999999998542211
Q ss_pred C---CCCC------CCCcccccccCccHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 003959 492 E---TTPA------DENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQL 562 (783)
Q Consensus 492 ~---~~~~------~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~~LA~eaV~~Ci~SL~~As~~I~~~~~~~Dg~L 562 (783)
+ .++. ......-.+| |||+|||.||||||||||++||+|+||+++|.||+||.+|++.|+++++++||+|
T Consensus 461 ~l~~~D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~L 539 (733)
T KOG2604|consen 461 SLRLSDEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAEL 539 (733)
T ss_pred hccCCchhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchh
Confidence 1 1110 0112234567 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhccccccccccccccccchhhHHHHHHHHccCCccccccchhhhhh---hcccchhhhhhhhHHHHHHH
Q 003959 563 FLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLAR---TLSPRVLESQIDAKKELEKS 639 (783)
Q Consensus 563 FlIKhLLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~---~l~P~v~e~~~Dsk~eld~~ 639 (783)
|+|||||||||||+||+|+|+++|+++|||++++++++++.+...||+++++|++++ .++|+|+++++|+|+|||.+
T Consensus 540 fliKhLLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q 619 (733)
T KOG2604|consen 540 FLIKHLLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ 619 (733)
T ss_pred hHHHHHHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999888999999998766 46999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHHHHHHHHhhcHHH
Q 003959 640 LKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPV 719 (783)
Q Consensus 640 Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~~~~~~~~~~i~~~lp~~ 719 (783)
||.+|+.||+.++..+++|+.+|+.++.+.+.......++-+........+.+++||.|..|..++.++...+...++.+
T Consensus 620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~~~ 699 (733)
T KOG2604|consen 620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLYVI 699 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999998877654444433333344567889999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHhHHHHHHHHHHHHHHHH
Q 003959 720 MAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQ 752 (783)
Q Consensus 720 ~~~m~lYL~d~~t~~iL~~pI~~~i~~~~~q~~ 752 (783)
+..|.+|+.|+.+.++.++||+++|+|+|..|.
T Consensus 700 ~~~~~~~~sn~~~~f~~f~~~~n~i~q~f~~~~ 732 (733)
T KOG2604|consen 700 QASMELLLSNDDENFIYFQPVRNNIQQVFYKFM 732 (733)
T ss_pred HHHHHHHhhcCcccchhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998864
|
|
| >PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1 | Back alignment and domain information |
|---|
| >PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation | Back alignment and domain information |
|---|
| >PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8 | Back alignment and domain information |
|---|
| >KOG3758 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] | Back alignment and domain information |
|---|
| >PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex | Back alignment and domain information |
|---|
| >KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 1e-13
Identities = 100/657 (15%), Positives = 223/657 (33%), Gaps = 173/657 (26%)
Query: 113 YRHYVNTLMGRIQ-TCDDILR--QVDGTLDL-FNELQLQHHAVATKTKTLHDACDRLVIE 168
+ H+++ G Q DIL + + ++Q ++ +K + D +++
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIMS 57
Query: 169 KQRLIEFAEAVQSKLKYFDEL----ENIAASFYSPNMNVGNGNFFHLLKRL-DECI---- 219
K V L+ F L E + F + + N+ L+ + E
Sbjct: 58 KDA-------VSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSM 107
Query: 220 ---LYVEG-NPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAA----IRSS 271
+Y+E + Y ++ V F + + R L+ A +++ A I
Sbjct: 108 MTRMYIEQRDRLYNDNQV----FAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 272 GGS-KTS-VSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEE-CHKL---Y 325
GS KT + + + + L +++ +S + +++L++ +++ +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 326 CEQ-----RLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLM--QVCQLEHQLFDHFFPS 378
+ + L +Q + K + + L+ V + ++ F S
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------CLLVLLNVQNAKA--WNAFNLS 265
Query: 379 S-----SEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRR 433
+ + D LS L H + E+ +L ++ L +
Sbjct: 266 CKILLTTRFKQ----VTDFLSAATTT--HISLDHHSMTLTPDEVKSLL-LKYLDCRPQDL 318
Query: 434 SESLAGLRPTLERILADVHERLTFRARTHIRDEIA---NYIPSDEDLNYPSKLEQSAGTK 490
+ P I+A+ IRD +A N+ + +N KL T
Sbjct: 319 PREVLTTNPRRLSIIAES-----------IRDGLATWDNW----KHVNC-DKLT----TI 358
Query: 491 LETTPADENPDVYKTWYPPL---EKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKA 547
+E++ P Y+ + L + + L + + + + V V + K
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKY 414
Query: 548 SKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKEL------------------ 589
S L+ K+ P + + + + L + + E+++ H+ +
Sbjct: 415 S-LVEKQ--PKESTISI--PSIYLELK-VKLENEYAL-HRSIVDHYNIPKTFDSDDLIPP 467
Query: 590 --D---FSHLLEHLRRILRGQ-ASLF-----D--------------WSRSTSLARTLSP- 623
D +SH+ HL+ I + +LF D W+ S S+ TL
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 624 RVLESQI-DAKKELEKSLKATCEEFIMAV-TKLVVDPMLSFVAKVTAVKVALSSGNQ 678
+ + I D + E+ + A +F+ + L+ +++AL + ++
Sbjct: 528 KFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDL------LRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| 2pft_A | 571 | Exocytosis protein; helix-turn-helix, endocytosis- | 98.02 | |
| 2b1e_A | 564 | Exocyst complex component EXO70; tethering complex | 97.91 |
| >2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.038 Score=64.09 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=82.2
Q ss_pred cccchhhHHHHHHhhC-CCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 182 KLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (783)
Q Consensus 182 ~L~yF~~Ld~itr~L~-sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~ 260 (783)
-+.||+.....-+.+. .|. .+-+.|...+++|.+++.||..|+- + + ..+.|.+.++..||.-+...|...|..-
T Consensus 5 v~~~~d~~~~~e~~i~~gp~--~~l~~yL~av~~l~~a~~~~~~~~~-~-s-~~l~~~~~Ll~~a~~~Le~eF~~lL~~~ 79 (571)
T 2pft_A 5 VISYYHVASDTEKIIREGPT--GRLEEYLGSMAKIQKAVEYFQDNSP-D-S-PELNKVKLLFERGKESLESEFRSLMTRH 79 (571)
T ss_dssp TSTHHHHHHHHHHHHHHCCT--TCHHHHHHHHHHHHHHHHHHHHHST-T-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchhhhhhhhcCcH--hhHHHHHHHHHHHHHHHHHHHhcCC-C-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666554444332 444 5678999999999999999998542 2 2 2489999999999999999999988875
Q ss_pred HHH-----HHHHHHhcCCCCCCCCcchhhhhhHHHH-HHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhh
Q 003959 261 SSQ-----VQAAIRSSGGSKTSVSEGVEASLIYVRF-KAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVK 334 (783)
Q Consensus 261 ~~~-----V~~~l~~~~~~~~~~s~~~~~aLlY~kF-~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~ 334 (783)
+.- +...+..... .+ +.+. .. +..+ ....+.++.+...+-.+.. ..+|.+.|.+.|...|.
T Consensus 80 ~~~~~p~~ll~~~~~~~~-~~--~~~~--~~-~~~~~~~~~~~L~~Ia~~m~~~g~-------~~~~~~~Y~~~R~~~l~ 146 (571)
T 2pft_A 80 SKVVSPVLLLDLISADDE-LE--VQED--VV-LEHLPESVLRDVVRISRWLVEYGR-------NQDFMNVYYQIRSSQLD 146 (571)
T ss_dssp CCCCCHHHHHHHHHHTCC-CC-------------SSCHHHHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHHH
T ss_pred CcCCChHHHHhccccccc-cC--cccc--cc-ccCCCHHHHHHHHHHHHHHHHcCC-------chHHHHHHHHHHHHHHH
Confidence 421 1122221110 00 0000 00 0001 1223345554444433321 25799999999988877
Q ss_pred HHH
Q 003959 335 GIV 337 (783)
Q Consensus 335 p~i 337 (783)
..+
T Consensus 147 ~sL 149 (571)
T 2pft_A 147 RSI 149 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
|
| >2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| d2b7ma1 | 551 | Exocyst complex component EXO70 {Baker's yeast (Sa | 97.85 |
| >d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Exocyst complex component domain: Exocyst complex component EXO70 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=0.015 Score=64.49 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=98.4
Q ss_pred CCCCccCCccHHHHHHHHHHHHHHhhhC----CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcC
Q 003959 198 SPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASS-QVQAAIRSSG 272 (783)
Q Consensus 198 sp~~~V~~~~F~~~L~~lD~ci~Fl~~h----p~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~-~V~~~l~~~~ 272 (783)
+|. .++-+.|..-|.++++.++||+.| +++++....+..++.++.+|+.-+..+|.+.|+.... +...-+.+.
T Consensus 19 g~~-~~~L~~Yl~al~rl~~al~~l~~~~~~~~~~~~~~gil~~l~~L~~~g~~~Le~~F~~lL~~~~p~~p~~~~~k~- 96 (551)
T d2b7ma1 19 GIN-QVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKK- 96 (551)
T ss_dssp CGG-GSTHHHHHHHHHHHHHHHHTTTSTTTSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCTHHHHHTC-
T ss_pred Ccc-cccHHHHHHHHHHHHHHHHHHHhcCcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhccC-
Confidence 444 677889999999999999999864 3677888889999999999999999999988853110 000001100
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcc-----
Q 003959 273 GSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK----- 347 (783)
Q Consensus 273 ~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~~----- 347 (783)
..+..+. ....+.++.+...+..... ..+|.+.|...|...+.-.++. |....+.
T Consensus 97 ---------~~~p~~~---~~~~~~L~~Ia~~l~~~~~-------~~~~~~iY~~~R~~~l~~sL~~-L~~~~~s~~~~~ 156 (551)
T d2b7ma1 97 ---------MPFPYYE---DQQLGALSWILDYFHGNSE-------GSIIQDILVGERSKLILKCMAF-LEPFAKEISTAK 156 (551)
T ss_dssp ---------CCCCCCC---HHHHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHHHHHHHTT-TGGGGCC-----
T ss_pred ---------CCCCCCC---HHHHHHHHHHHHHHHhCCC-------CcHHHHHHHHHHHHHHHHHHHH-hhhhhcchhhhc
Confidence 0011111 1223345555555544321 3569999999998877665542 2221111
Q ss_pred ----CCchhhHHhHHHHHHHHHHHHHHhhcccCCCC
Q 003959 348 ----ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 379 (783)
Q Consensus 348 ----~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~ 379 (783)
+....-+..-..=|..+.+.|+.|-.+.|+..
T Consensus 157 ~~~y~~~~~~i~~~~~av~~l~~~E~~l~~~if~~~ 192 (551)
T d2b7ma1 157 NAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY 192 (551)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 01111222222345566789999999999864
|