Citrus Sinensis ID: 003961
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VYU6 | 725 | Golgin candidate 4 OS=Ara | yes | no | 0.913 | 0.986 | 0.566 | 0.0 | |
| Q84WU4 | 712 | Golgin candidate 3 OS=Ara | no | no | 0.901 | 0.991 | 0.549 | 0.0 |
| >sp|Q8VYU6|GOGC4_ARATH Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1 | Back alignment and function desciption |
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Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/789 (56%), Positives = 570/789 (72%), Gaps = 74/789 (9%)
Query: 1 MRGTLANYKENLNKIALDVHYDDDGEE--LKIYDSRNVDDMSVSDRRDSHSFANSKSVSW 58
M ++AN KENLNKIA DVH DD+ ++ L IY S N +DRR+S+ F S+S
Sbjct: 1 MWSSVANLKENLNKIAHDVHDDDEDDDEDLTIYGSTN----GGTDRRNSNGFRYSRS--- 53
Query: 59 SPVSNGFESPHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLL 118
P++NGFESP +PEIERYKAEI +LQ+SE+EIKALSVNYAALLKEKE+QISRLN E G L
Sbjct: 54 -PMANGFESPVNPEIERYKAEINKLQKSESEIKALSVNYAALLKEKEDQISRLNQENGSL 112
Query: 119 KQNLDATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGF 178
KQNL +TNAAL R S+AS+N N KG+GD SP+R + KNR+ Q+ NG
Sbjct: 113 KQNLTSTNAALKESRLDLSRASNN--NAIKGNGDHSPNRSQRSPTNWKNRN---QMNNGI 167
Query: 179 -SKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMEL 237
SK +G N S + KEKE A++LEE+ RS+A+ +A EL
Sbjct: 168 ASKPNGTENDSES-----------HKKEKEFAEMLEERTRSMASAQA----------REL 206
Query: 238 EQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297
E++R K A++Q+ LQEE++ NE+F++EL+SL++DK+KT +E ++R+EL+ KL+E+R+LQ
Sbjct: 207 EKEREKSANLQILLQEERKQNETFKEELQSLRLDKEKTLMESNKVRRELDAKLAEIRQLQ 266
Query: 298 MELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASE 357
M+LN E ENLK V LEKENN LK++++EL AALE ++KS++ K+FP ++E
Sbjct: 267 MKLNGGEQHAFGISRENLKEVNKALEKENNELKLKRSELEAALEASQKSTSRKLFPKSTE 326
Query: 358 YPSRLDGMVSSE---SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414
SR + E +FPGKE+ME+SLQ+LEK+L+E E+DKA QEL RLKQHL+EK
Sbjct: 327 DLSRHLSSLDEEKAGTFPGKEDMEKSLQRLEKELEEARREKDKARQELKRLKQHLLEKET 386
Query: 415 EESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIID 474
EESEKMDEDS++I+ELR+ NEYQR+QIL LE L+QT+A QEE K + EI+KSK II+
Sbjct: 387 EESEKMDEDSRLIDELRQTNEYQRSQILGLEKALRQTMANQEEIKSSSDLEIRKSKGIIE 446
Query: 475 GLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKN 534
LN KLANC+RTI++KNVELLNLQTALGQY+AEIEAK H ERELA+A+E++ KLS LK+
Sbjct: 447 DLNQKLANCLRTIDSKNVELLNLQTALGQYYAEIEAKEHFERELAVAKEDAMKLSARLKD 506
Query: 535 ADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVD 594
D++ E S+ EKEEI K+ H+E + AE K R +K+E+DNAK+R +EQSMTRLNRMS+D
Sbjct: 507 VDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVEDDNAKVRRVLEQSMTRLNRMSMD 566
Query: 595 SDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQQG-AGKGVVRGV 653
SDFLVDRRIVIKLLVTYFQRNHS+EVLDLMVRMLGFS+E+KQRIG+AQQG AGKGVVRGV
Sbjct: 567 SDFLVDRRIVIKLLVTYFQRNHSREVLDLMVRMLGFSEEEKQRIGLAQQGAAGKGVVRGV 626
Query: 654 LGLPGRLVGGIIGGSQ--ADANAKMASENQSFADLWVDFLLKETEERERRESAENMARSK 711
LG PGRLVGGI+GG D++ MAS+NQSFAD+WV+FLLK+ EERERRE+ + + +
Sbjct: 627 LGFPGRLVGGILGGGGGSPDSHPNMASDNQSFADMWVEFLLKDAEERERREAEDAANKEQ 686
Query: 712 EDIHGRSRTTAETSPTAVPGFSRSNLSPSQNLNPLSSQGNFRQLEHSDSEFSTVPLSSSK 771
E A S T P + E SDSEFSTVPL+SS
Sbjct: 687 E--------KATVSSTQRPKY-----------------------EQSDSEFSTVPLTSSN 715
Query: 772 SNSRLSRLL 780
SN RLSRLL
Sbjct: 716 SNHRLSRLL 724
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Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WU4|GOGC3_ARATH Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| 225454379 | 790 | PREDICTED: golgin candidate 4-like isofo | 0.983 | 0.974 | 0.662 | 0.0 | |
| 255541734 | 755 | Structural maintenance of chromosome 1 p | 0.950 | 0.985 | 0.650 | 0.0 | |
| 359489673 | 776 | PREDICTED: golgin candidate 4-like isofo | 0.971 | 0.980 | 0.661 | 0.0 | |
| 297745365 | 729 | unnamed protein product [Vitis vinifera] | 0.872 | 0.936 | 0.682 | 0.0 | |
| 224067944 | 734 | predicted protein [Populus trichocarpa] | 0.923 | 0.985 | 0.618 | 0.0 | |
| 224130406 | 729 | predicted protein [Populus trichocarpa] | 0.927 | 0.995 | 0.617 | 0.0 | |
| 356522556 | 782 | PREDICTED: golgin candidate 3-like [Glyc | 0.970 | 0.971 | 0.600 | 0.0 | |
| 356560312 | 783 | PREDICTED: golgin candidate 4-like [Glyc | 0.971 | 0.971 | 0.585 | 0.0 | |
| 357507611 | 755 | Golgin candidate [Medicago truncatula] g | 0.954 | 0.989 | 0.571 | 0.0 | |
| 356566931 | 758 | PREDICTED: golgin candidate 3-like [Glyc | 0.948 | 0.980 | 0.573 | 0.0 |
| >gi|225454379|ref|XP_002279017.1| PREDICTED: golgin candidate 4-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/803 (66%), Positives = 637/803 (79%), Gaps = 33/803 (4%)
Query: 1 MRGTLANYKENLNKIALDVHYDDDGEELKIYDSR-NVDDMSVSDRRDSHSFANSKSVSWS 59
M T+AN KENLNKIALDVH DDD EEL+I+ +D SVSDRR SH +A+S
Sbjct: 1 MWSTIANLKENLNKIALDVH-DDDDEELQIHAPVVAAEDPSVSDRRFSHKYAHS------ 53
Query: 60 PVSNGFESPHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLK 119
NG +S ++ EIE+YKAEIKRLQESEAEIKALS+NYAALLK+KE+QIS+L+ E G LK
Sbjct: 54 ---NGIDSAYNSEIEQYKAEIKRLQESEAEIKALSINYAALLKDKEDQISKLSKENGSLK 110
Query: 120 QNLDATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGFS 179
NLD+TNA L+A R+ NS+ S+N ++ KGSGD SPSRQHKLTAQVK R G+Q+ NG
Sbjct: 111 HNLDSTNAVLSASRSENSRTSTNSLHALKGSGDQSPSRQHKLTAQVKGRSTGNQMHNGVV 170
Query: 180 KQDGVSNG-SHALQTEVVQS------SKMQGKEKELADLLEEKNRSLAAERAAYESQTRQ 232
KQDG+SNG +HA+Q + QS S ++G EKELADLLEEKNRSLAA +A +E Q +Q
Sbjct: 171 KQDGLSNGIAHAVQPDAAQSKMETKNSNLKGNEKELADLLEEKNRSLAALQATHELQIKQ 230
Query: 233 LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE 292
LRMEL+++R+K ++ LKLQEE +LN SF ++L SLKMDK+KTS+E+ ++R ELN K S
Sbjct: 231 LRMELDKERDKLKNINLKLQEENKLNHSFLEDLNSLKMDKEKTSMEMNKIRSELNEKRSV 290
Query: 293 LRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIF 352
++RLQMELNRRE+ +AND+VE+LK V+A LEKEN+ LK EK E+ AL ++K+S +KI
Sbjct: 291 IQRLQMELNRREEEEANDMVESLKGVIANLEKENSCLKREKDEMEVALRMSKKASTDKIS 350
Query: 353 PDASE----YPSRLDGMV-SSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ 407
PD S+ + S L+ V SS SFPGKEEM+ SLQ++E+DLKE C ERDKALQELTRLKQ
Sbjct: 351 PDVSDASEKHFSSLNEQVNSSGSFPGKEEMQISLQQVERDLKEACQERDKALQELTRLKQ 410
Query: 408 HLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 467
HL+EK EESEKMDEDSKIIEELR+NNEYQRAQIL+LE LKQ +A+Q+E KM+N SE+Q
Sbjct: 411 HLLEKESEESEKMDEDSKIIEELRQNNEYQRAQILNLEKALKQAIARQDEIKMLNSSELQ 470
Query: 468 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAK 527
KSKEIID LN KLA+ M T++AKNVELLNLQTALGQY+AE+EAK LER+LA AREESAK
Sbjct: 471 KSKEIIDDLNKKLASYMCTLDAKNVELLNLQTALGQYYAEMEAKERLERDLAHAREESAK 530
Query: 528 LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTR 587
LSE LK+A Q+AE+S+ EKEEIL KLS +E ML EGK R NKLEEDN KLR A+EQSM R
Sbjct: 531 LSELLKDASQQAELSKREKEEILAKLSQAETMLGEGKSRVNKLEEDNMKLRRALEQSMIR 590
Query: 588 LNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQQGAGK 647
LNRMS+DSD+ VDRRIV+KLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIG+AQQG GK
Sbjct: 591 LNRMSMDSDYFVDRRIVVKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGVAQQGTGK 650
Query: 648 GVVRGVLGLPGRLVGGIIGGSQADANAKMASENQSFADLWVDFLLKETEERERRESAENM 707
GVVRGVLGLPGRLVGGI+GGS +A A +ASENQSFADLWVDFLLKETEERERRE+ +
Sbjct: 651 GVVRGVLGLPGRLVGGILGGSSGEAQANVASENQSFADLWVDFLLKETEERERREAVDVT 710
Query: 708 ARSKEDIHGRSRTTAETSPT-----AVPGFSRSNLSPSQNLNPLS--SQGNFRQLEHSDS 760
K D H RS +SP A GFSR L+P+ N NP S S G+ Q E SDS
Sbjct: 711 GAPKGDPH-RSPNFPGSSPMPDRVGAASGFSR--LNPAVNPNPSSMFSHGSVLQSEASDS 767
Query: 761 EFSTVPLSSSKSNSRLSRLLPDH 783
EFS VPL+S++S+SRLSRLLP +
Sbjct: 768 EFSNVPLTSAESSSRLSRLLPKY 790
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541734|ref|XP_002511931.1| Structural maintenance of chromosome 1 protein, putative [Ricinus communis] gi|223549111|gb|EEF50600.1| Structural maintenance of chromosome 1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359489673|ref|XP_003633963.1| PREDICTED: golgin candidate 4-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297745365|emb|CBI40445.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224067944|ref|XP_002302611.1| predicted protein [Populus trichocarpa] gi|222844337|gb|EEE81884.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224130406|ref|XP_002320829.1| predicted protein [Populus trichocarpa] gi|222861602|gb|EEE99144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356522556|ref|XP_003529912.1| PREDICTED: golgin candidate 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356560312|ref|XP_003548437.1| PREDICTED: golgin candidate 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357507611|ref|XP_003624094.1| Golgin candidate [Medicago truncatula] gi|355499109|gb|AES80312.1| Golgin candidate [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356566931|ref|XP_003551678.1| PREDICTED: golgin candidate 3-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| TAIR|locus:2082782 | 712 | GDAP1 "GRIP-related ARF-bindin | 0.619 | 0.681 | 0.558 | 2.5e-136 | |
| TAIR|locus:2062984 | 725 | GC4 "AT2G46180" [Arabidopsis t | 0.828 | 0.895 | 0.453 | 5.2e-136 | |
| DICTYBASE|DDB_G0346831 | 1369 | DDB_G0346831 [Dictyostelium di | 0.518 | 0.296 | 0.194 | 7.4e-19 | |
| UNIPROTKB|F1SQ11 | 1411 | EEA1 "Uncharacterized protein" | 0.642 | 0.356 | 0.214 | 6.1e-15 | |
| DICTYBASE|DDB_G0287291 | 1738 | abpD "interaptin" [Dictyosteli | 0.684 | 0.308 | 0.208 | 1.2e-13 | |
| UNIPROTKB|Q15075 | 1411 | EEA1 "Early endosome antigen 1 | 0.633 | 0.351 | 0.222 | 1.6e-13 | |
| UNIPROTKB|J9P2D7 | 1364 | EEA1 "Uncharacterized protein" | 0.636 | 0.365 | 0.221 | 3.1e-13 | |
| UNIPROTKB|F1PZD3 | 1411 | EEA1 "Uncharacterized protein" | 0.636 | 0.352 | 0.221 | 3.3e-13 | |
| UNIPROTKB|F1REW5 | 1204 | CLIP1 "Uncharacterized protein | 0.605 | 0.393 | 0.214 | 7.3e-13 | |
| UNIPROTKB|Q8IWJ2 | 1684 | GCC2 "GRIP and coiled-coil dom | 0.650 | 0.302 | 0.192 | 8.6e-13 |
| TAIR|locus:2082782 GDAP1 "GRIP-related ARF-binding domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1315 (468.0 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 275/492 (55%), Positives = 352/492 (71%)
Query: 236 ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRR 295
EL ++R K D QL LQEE++ +ESF++EL+S+++DK+KTS+EI++MR EL+ KL E++
Sbjct: 200 ELAKEREKLRDFQLSLQEERKRSESFKEELESMRLDKNKTSMEISKMRSELDAKLLEIKH 259
Query: 296 LQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDA 355
LQM+L +E +E+LK V LEKENN LK++++EL AALE++RK +N K+FPDA
Sbjct: 260 LQMKLTGQESHAIGPGMEHLKEVNKALEKENNELKLKRSELEAALEESRKLTNSKVFPDA 319
Query: 356 SE----YPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 411
+E +PS LD ESFPGKEEMEQSLQ+LE DLKET ERDKA QEL RLKQHL+E
Sbjct: 320 TESLTRHPSTLD-KEKPESFPGKEEMEQSLQRLEMDLKETQRERDKARQELKRLKQHLLE 378
Query: 412 KAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKE 471
K EESEKMDEDS++IEELR+ NEYQR+QI HLE LKQ ++ QE+ ++ N ++I+K K+
Sbjct: 379 KETEESEKMDEDSRLIEELRQTNEYQRSQISHLEKSLKQAISNQEDNRLSNDNQIRKLKD 438
Query: 472 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHXXXXXXXXXXXXXXXXXY 531
+D LN KL NC+RTIE+KNVELLNLQTALGQY+AEIEAK H
Sbjct: 439 TVDDLNQKLTNCLRTIESKNVELLNLQTALGQYYAEIEAKEHFERELAMAKDELMKLSAR 498
Query: 532 LKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRM 591
LK++D+R E S EKE++ KL H+EK+ AE K R K+EEDNAK+R +EQSMTRLNRM
Sbjct: 499 LKDSDERLESSNKEKEDVTSKLLHAEKVAAEWKNRVTKVEEDNAKVRRVLEQSMTRLNRM 558
Query: 592 SVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQQXXXXXXXX 651
S++SD+LVDRRIVIKLLVTYFQ+NH+KEVLDLMVRMLGFS+EDK+RIG A+Q
Sbjct: 559 SMESDYLVDRRIVIKLLVTYFQKNHNKEVLDLMVRMLGFSEEDKERIGAAKQGGGKGVVR 618
Query: 652 XXXXXXXXXXXXXXXXSQADANAKMASENQSFADLWVDFLLKXXXXXXXXXSAENMA-RS 710
A+ +A AS+NQSFADLWVDFLLK + E A ++
Sbjct: 619 GVLGFPGRFVGGILGGKSAELHANAASDNQSFADLWVDFLLKDAEERERREAEEAAASKA 678
Query: 711 KEDIHGRSRTTA 722
K+D R+R A
Sbjct: 679 KQDSE-RTRQEA 689
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| TAIR|locus:2062984 GC4 "AT2G46180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0346831 DDB_G0346831 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0287291 abpD "interaptin" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15075 EEA1 "Early endosome antigen 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1REW5 CLIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8IWJ2 GCC2 "GRIP and coiled-coil domain-containing protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VYU6 | GOGC4_ARATH | No assigned EC number | 0.5665 | 0.9131 | 0.9862 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 783 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-06 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 1e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 4e-04 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 5e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-04 | |
| TIGR01069 | 771 | TIGR01069, mutS2, MutS2 family protein | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.003 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.004 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.004 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-11
Identities = 93/389 (23%), Positives = 162/389 (41%), Gaps = 54/389 (13%)
Query: 204 KEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQD 263
+ K + + + + L E A E+Q +L EL+ +N+ ++ L+E +R E +
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 264 ELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLE 323
+L+ LK + E+ +++ L EL L+ EL + + +E L+ + +LE
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELE-----ELQERLEELEEELESLE 771
Query: 324 KENNSLKMEKTEL---VAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQS 380
+ LK E EL AL++ + E++ EE E+
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEEL-----------------------EEAERR 808
Query: 381 LQKLEKDLKETCSERDKALQELTRLKQ---HLIEKAQEESEKMDEDSKIIEELRENNEYQ 437
L LE++L+ R++ QE+ L++ L EK E E+++E K +EEL+E E
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEEL 868
Query: 438 RAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNL 497
A+ LE+ LK+ ++EE +E + L ++LA IE L L
Sbjct: 869 EAEKEELEDELKELEEEKEEL-----------EEELRELESELAELKEEIEKLRERLEEL 917
Query: 498 QTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEI----LVKL 553
+ L + E+ E E L E L L+ +R E + + +
Sbjct: 918 EAKLERLEVELP-----ELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEY 972
Query: 554 SHSEKMLAEGKGRANKLEEDNAKLRLAVE 582
E+ E K + LEE KL +E
Sbjct: 973 EEVEERYEELKSQREDLEEAKEKLLEVIE 1001
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.9 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.89 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.78 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.69 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.64 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.64 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.63 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.63 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.62 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.6 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.59 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.56 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.4 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 98.36 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.34 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.03 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.02 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.98 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 97.94 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.9 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.87 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.85 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 97.79 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 97.79 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 97.72 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.61 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.59 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.54 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.45 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.45 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 97.44 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.4 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 97.39 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.37 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.36 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.36 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 97.34 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.3 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 97.27 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 97.26 | |
| PF10375 | 19 | GRAB: GRIP-related Arf-binding domain ; InterPro: | 97.24 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.2 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 97.16 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.12 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.07 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.95 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.93 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 96.82 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.76 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 96.74 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 96.73 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.59 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.59 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.55 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 96.54 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.41 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 96.41 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.4 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 96.3 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.26 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 96.05 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.05 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.01 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 95.94 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.93 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 95.88 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 95.87 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.82 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.81 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 95.8 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 95.79 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.73 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 95.73 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.66 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 95.65 | |
| PF01465 | 46 | GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g | 95.64 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 95.52 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 95.43 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.42 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 95.38 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.37 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.34 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 95.3 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 95.26 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 95.24 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 95.2 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 95.12 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 94.94 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 94.71 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 94.67 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 94.52 | |
| PF13514 | 1111 | AAA_27: AAA domain | 94.47 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.4 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.39 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 94.18 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 94.13 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 94.03 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 94.01 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 93.97 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.75 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 93.69 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 93.66 | |
| KOG4302 | 660 | consensus Microtubule-associated protein essential | 93.52 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 93.28 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 93.26 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 93.19 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 93.19 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 93.14 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 93.14 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 92.97 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 92.97 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.95 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 92.82 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 92.75 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 92.45 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 92.4 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 92.27 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 92.24 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 92.19 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 92.14 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 92.11 | |
| PF06548 | 488 | Kinesin-related: Kinesin-related; InterPro: IPR010 | 92.08 | |
| smart00755 | 46 | Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin- | 91.87 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 91.86 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 91.53 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 91.43 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 91.38 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 91.17 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 91.13 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 91.04 | |
| KOG2991 | 330 | consensus Splicing regulator [RNA processing and m | 90.93 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 90.68 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 90.68 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 90.27 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 90.26 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 90.08 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 89.88 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 89.63 | |
| PF13514 | 1111 | AAA_27: AAA domain | 89.48 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 89.39 | |
| KOG4603 | 201 | consensus TBP-1 interacting protein [Signal transd | 89.31 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 89.19 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 88.98 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 88.93 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 88.67 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 88.49 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 88.25 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 88.05 | |
| PF08826 | 61 | DMPK_coil: DMPK coiled coil domain like; InterPro: | 88.04 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 87.96 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.95 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 87.26 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 87.25 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 87.2 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 86.79 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 86.75 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 86.72 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 86.27 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 86.26 | |
| KOG4403 | 575 | consensus Cell surface glycoprotein STIM, contains | 86.21 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 85.73 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 85.65 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 85.52 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 85.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.37 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 84.04 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 83.67 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 83.41 | |
| PF07989 | 75 | Microtub_assoc: Microtubule associated; InterPro: | 83.23 | |
| PF03999 | 619 | MAP65_ASE1: Microtubule associated protein (MAP65/ | 83.11 | |
| PF12777 | 344 | MT: Microtubule-binding stalk of dynein motor; Int | 81.68 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 81.64 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 81.54 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 81.2 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 81.16 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 81.05 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 80.89 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 80.48 | |
| COG2433 | 652 | Uncharacterized conserved protein [Function unknow | 80.32 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 80.24 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 80.01 |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-05 Score=89.14 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHhccc--ccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCC
Q 003961 274 KTSIEITEMRKELNGKLSELRRLQMELNRR--EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (783)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~ 349 (783)
.....+..+..++.....++..+...|..- +-.+..+.++.++..+..+......++..+..+...|+.++..+..
T Consensus 374 ~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 451 (880)
T PRK02224 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA 451 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444321 1123335677888888888888888888888888888888754333
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants | Back alignment and domain information |
|---|
| >smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245 | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >KOG2991 consensus Splicing regulator [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [] | Back alignment and domain information |
|---|
| >PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins | Back alignment and domain information |
|---|
| >PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >COG2433 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 5e-18
Identities = 77/470 (16%), Positives = 151/470 (32%), Gaps = 131/470 (27%)
Query: 204 KEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQD 263
++E+ ++ K+ S T +L L ++ + VQ ++E R+N F
Sbjct: 47 SKEEIDHIIMSKDA---------VSGTLRLFWTLLSKQEEM--VQKFVEEVLRINYKF-- 93
Query: 264 ELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLE 323
L S ++ E R + +R ND K V+ L+
Sbjct: 94 -LMS-------------PIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQ 135
Query: 324 KENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSL-- 381
+L AL + R + N + +DG++ S GK +
Sbjct: 136 P--------YLKLRQALLELRPAKN--VL---------IDGVLGS----GK----TWVAL 168
Query: 382 -----QKLEK---------DLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKII 427
K++ +LK C+ + L+ L +L + S+ I
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 428 EELRE-------NNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKL 480
++ + Y+ +L L NV ++ + + N
Sbjct: 228 HSIQAELRRLLKSKPYENC-LLVLLNV--------------------QNAKAWNAFNLS- 265
Query: 481 ANCMRT-IEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRA 539
C + + + ++ + +A ++ + L +E L LK D R
Sbjct: 266 --C-KILLTTRFKQVTDFLSAATTTHISLD-----HHSMTLTPDEVKSL--LLKYLDCRP 315
Query: 540 EVSRSEKEEI--LVKLSHSEKMLAEGKGRANKLEEDNA-KLRLAVEQSMTRLN------- 589
+ E LS + + +G + + N KL +E S+ L
Sbjct: 316 QDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 590 --RMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQR 637
R+SV F I LL + +V+ ++ ++ +S +KQ
Sbjct: 375 FDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.64 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.45 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.41 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.33 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 97.35 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 97.05 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 96.5 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.13 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 95.74 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 95.1 | |
| 1go4_E | 100 | MAD1 (mitotic arrest deficient)-like 1; mitotic sp | 94.48 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 94.45 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.32 | |
| 1wt6_A | 81 | Myotonin-protein kinase; coiled-coil, kinase activ | 93.56 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 92.72 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 92.05 | |
| 1upt_B | 60 | Golgi autoantigen, golgin subfamily A member 4; hy | 90.15 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 87.07 | |
| 2v4h_A | 110 | NF-kappa-B essential modulator; transcription, met | 84.55 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 80.39 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00027 Score=64.97 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=19.2
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 554 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 554 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
......+..+...+..+......++..++....+|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 247 TKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445555555555555566555555544
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1 | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E* | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00