Citrus Sinensis ID: 003970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.921 | 0.952 | 0.402 | 1e-139 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.930 | 0.939 | 0.392 | 1e-130 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.886 | 0.925 | 0.375 | 1e-120 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.879 | 0.941 | 0.359 | 1e-118 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.611 | 0.593 | 0.253 | 2e-28 | |
| P00782 | 382 | Subtilisin BPN' OS=Bacill | no | no | 0.129 | 0.264 | 0.326 | 9e-08 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.135 | 0.239 | 0.336 | 5e-07 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.401 | 0.160 | 0.243 | 1e-06 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.501 | 0.206 | 0.227 | 1e-06 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.491 | 0.329 | 0.245 | 1e-06 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 312/775 (40%), Positives = 424/775 (54%), Gaps = 54/775 (6%)
Query: 13 LSLSLSFVHSTSTASH--VYIVYLGHNRHCDP-NLISKSHLQLLSSVFASEEDAKRSLLY 69
L L L F H +S++S YIV++ ++ +L S + L S+ S E LLY
Sbjct: 13 LLLCLGFCHVSSSSSDQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAE-----LLY 67
Query: 70 GYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPV 129
Y+ + GFS +L +A SL VIS+ +LHTTR+ F+GL ++T ++ P
Sbjct: 68 TYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLD-EHTADLFPE 126
Query: 130 QLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGA 189
+Y D+VVG+ DTGVWPES+S+ +E PIPSSWKG C G F CNRKLIGA
Sbjct: 127 AGSY-SDVVVGVLDTGVWPESKSYSDE-GFGPIPSSWKGGCEAGTNFT-ASLCNRKLIGA 183
Query: 190 RYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGG 249
R++ +G+E GP++ S +E RS RD GHGTHT+STAAGS+ + A G G ARG
Sbjct: 184 RFFARGYESTMGPIDES--KESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGM 241
Query: 250 APRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNAD 309
APRAR+AVYK+CW G C +DILAA D A+ D V+V+S S G + ++
Sbjct: 242 APRARVAVYKVCW----LGGCFSSDILAAIDKAIADNVNVLSMSLGGG--MSDYYRDGVA 295
Query: 310 IGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVG 369
IG+F AM+ G+ V S GN GP S + NVAPW V A ++DR FP ++ + + G
Sbjct: 296 IGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTG 355
Query: 370 ESFISTEVKAKLVEAFTYFADG-------ICKCENWMGRKATGRVVLCFSTMGSVKTEEA 422
S E + F Y + +C + K G++V+C + + + ++
Sbjct: 356 VSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGI-NARVQKG 414
Query: 423 EAAAKKANASGLIFAEPMT---ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLK 479
+ K A G+I A EL+A+ ++P + G +R Y+ P P +
Sbjct: 415 DVV-KAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPN-PTASIS 472
Query: 480 PSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRS 539
T +G P+P VA FSSRGP+SI+P+ILKPD+ APG+ +LAAW PT L SD R
Sbjct: 473 ILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRR 532
Query: 540 VKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMK 599
V++N SGTSMSCPHVSG+ AL+KS HP WSPAAIRSALMTTAY +L + K
Sbjct: 533 VEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGK 592
Query: 600 VSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTS 659
S PFD GAGH++P A +PGLIYDL DY+ FL + YT QI + +
Sbjct: 593 PSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSV------SRRNYT 646
Query: 660 CPQAHKIPNSFINYPSITVSNLQSTMTIK--RTVKNVGQKKNAIYFASVV-KPGGVEVVV 716
C + + +NYPS V N+ K RTV +VG Y V + GV++ V
Sbjct: 647 CDPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGA--GTYSVKVTSETTGVKISV 703
Query: 717 WPRVLVFSWFKEEVSYYVSL-----KPLKMSQGRFDFGQIVWSDGFHYVRSPLVV 766
P VL F E+ SY V+ KP G FG I WSDG H V SP+ +
Sbjct: 704 EPAVLNFKEANEKKSYTVTFTVDSSKP----SGSNSFGSIEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 309/787 (39%), Positives = 428/787 (54%), Gaps = 59/787 (7%)
Query: 15 LSLSFVHSTSTASHV-----YIVYLGHNRHCDPNLISKS--HLQLLSS----VFASEEDA 63
L + F+ S++S + YIV L N SK HL L V EE+
Sbjct: 8 LCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEEP 67
Query: 64 KRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLI-LDN 122
LLY Y + GF+A+L S+A L EV+++ VL++ TT S+ F+GL N
Sbjct: 68 SSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGN 127
Query: 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKAC 182
+G + + +G ++G+ DTGVWPES SF ++ M IP WKG C GE F +C
Sbjct: 128 SGVWSKSR--FGQGTIIGVLDTGVWPESPSF-DDTGMPSIPRKWKGICQEGESFS-SSSC 183
Query: 183 NRKLIGARYYVKGFEEEYGPLNA-STNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGL 241
NRKLIGAR++++G P + + REY SARD GHGTHTAST GS A G
Sbjct: 184 NRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGN 243
Query: 242 GRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLR 301
G G+ARG AP A +AVYK+CW C +DILAA D A+ D VDV+S S G P
Sbjct: 244 GAGVARGMAPGAHIAVYKVCWFNG----CYSSDILAAIDVAIQDKVDVLSLSLGGFPI-- 297
Query: 302 PFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVV 361
P + IG+F AM+ G++V+ + GN+GP S V N APW + A ++DR FP + +
Sbjct: 298 PLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRL 357
Query: 362 NSDFSIVGESFISTE-VKAKLVEAFTYFADGICKCENWMGR------KATGRVVLCFSTM 414
+ + GES + +K E + G K + R + G++V+C +
Sbjct: 358 ANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRGV 417
Query: 415 GSVKTEEAEAAAKKANASGLIFAEPMTELIAEVD-----IIPTVRIDIAQGTQLRDYLAQ 469
++E+ EA K+A +I A TE+ E D ++P I + L+ Y+
Sbjct: 418 NG-RSEKGEAV-KEAGGVAMILAN--TEINQEEDSIDVHLLPATLIGYTESVLLKAYVNA 473
Query: 470 FPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTP 529
+ P ++ T IG+ AP VA FS+RGPS +P ILKPD+ APG+ ++AAWP N
Sbjct: 474 TVK-PKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLG 532
Query: 530 PTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSH 589
PT LP D R V + SGTSMSCPHVSG+ ALI+SA+PNWSPAAI+SALMTTA D
Sbjct: 533 PTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQG 592
Query: 590 DSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFL 649
+I G K + F IGAGH+NP KA++PGL+Y+++P DYI +L +G+T+ I I
Sbjct: 593 KAIKDGN--KPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAI-- 648
Query: 650 PSPDETERTSCPQ-AHKIPNSFINYPSITV--SNLQSTMTIKRTVKNVGQKKNAIYFASV 706
+ SC K P +NYPSI V ++T I R V NVG N+IY +V
Sbjct: 649 ----THKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGS-PNSIYSVNV 703
Query: 707 VKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQG----RFDFGQIVWSDG---FHY 759
P G++V+V P+ LVF + +SY V K ++G F GQ+ W +
Sbjct: 704 KAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQR 763
Query: 760 VRSPLVV 766
VRSP+ V
Sbjct: 764 VRSPISV 770
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 285/760 (37%), Positives = 412/760 (54%), Gaps = 67/760 (8%)
Query: 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSS 85
A YI+YLG +R + K+H+ LLSS+ S+E+AK +Y Y +F+ F+AKL+
Sbjct: 34 AKDFYIIYLG-DRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPH 92
Query: 86 QAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTG 145
+A + EMEEV+S+ +Q KLHTT+SWDF+GL L L D+++G+ DTG
Sbjct: 93 EAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPL-----TAKRHLKAERDVIIGVLDTG 147
Query: 146 VWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNA 205
+ P+SESF + + P P+ WKG+C + F CN K+IGA+Y+ G
Sbjct: 148 ITPDSESFLDH-GLGPPPAKWKGSCGPYKNF---TGCNNKIIGAKYFKHDGNVPAG---- 199
Query: 206 STNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKD 265
E RS D GHGTHT+ST AG + NA +G+ G ARG P ARLA+YK+CW +
Sbjct: 200 ----EVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARS 255
Query: 266 SDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFS 325
C + DILA F+ A+HDGV++IS S G + + + + +GSF+AM+ G+ V S
Sbjct: 256 G---CADMDILAGFEAAIHDGVEIISISIGGP--IADYSSDSISVGSFHAMRKGILTVAS 310
Query: 326 GGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNS--DFSIVGESFISTEVKA-KLV 382
GNDGP V N PW + VAAS IDRTF ++I + + FS +G S S + K+ LV
Sbjct: 311 AGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLV 370
Query: 383 EAF--------TYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGL 434
Y A C ++ +K G+V++C G V E+ K +G
Sbjct: 371 SGVDAAKNTDDKYLAR-YCFSDSLDRKKVKGKVMVCRMGGGGV-----ESTIKSYGGAGA 424
Query: 435 IFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVA 494
I A++ + P ++ + G + Y+ V K + +I PAP VA
Sbjct: 425 IIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYINSTRSASAVIQKTRQVTI---PAPFVA 481
Query: 495 YFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPH 554
FSSRGP+ S +LKPDI APGI +LAA+ T L D + K+ SGTSM+CPH
Sbjct: 482 SFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPH 541
Query: 555 VSGVVALIKSAHPNWSPAAIRSALMTTA--YTRDTSHDSILAGGSMKVSDPFDIGAGHIN 612
V+GV A +KS HP+W+PAAI+SA++T+A +R + D+ F G G IN
Sbjct: 542 VAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNKDA-----------EFAYGGGQIN 590
Query: 613 PMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQ-AHKIPNSFI 671
P +A PGL+YD+ Y+ FL GY N L T SC + + +
Sbjct: 591 PRRAASPGLVYDMDDISYVQFLCGEGY-----NATTLAPLVGTRSVSCSSIVPGLGHDSL 645
Query: 672 NYPSITV---SNLQSTMTI-KRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFK 727
NYP+I + S ST+ + +R V NVG +++Y A+V P GVE+ V P+ L FS
Sbjct: 646 NYPTIQLTLRSAKTSTLAVFRRRVTNVGP-PSSVYTATVRAPKGVEITVEPQSLSFSKAS 704
Query: 728 EEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVVF 767
++ S+ V +K +M+ G+ G +VW H VRSP+V++
Sbjct: 705 QKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIY 744
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 276/767 (35%), Positives = 408/767 (53%), Gaps = 79/767 (10%)
Query: 18 SFVHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSG 77
S + S ++YIVY+G DP+ H +L V S A S+L+ YK SF+G
Sbjct: 22 SRLDSDDDGKNIYIVYMGRKLE-DPDSAHLHHRAMLEQVVGSTF-APESVLHTYKRSFNG 79
Query: 78 FSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDI 137
F+ KL +A +A ME V+S+F +++ +LHTTRSWDF+G L P + +I
Sbjct: 80 FAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPL-----TVPRRSQVESNI 134
Query: 138 VVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFE 197
VVG+ DTG+WPES SF +E SP P WKGTC F CNRK+IGAR Y G
Sbjct: 135 VVGVLDTGIWPESPSFDDE-GFSPPPPKWKGTCETSNNF----RCNRKIIGARSYHIGRP 189
Query: 198 EEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAV 257
G +N RD GHGTHTASTAAG + A +GLG G ARGG P AR+A
Sbjct: 190 ISPGDVNG--------PRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAA 241
Query: 258 YKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQ 317
YK+CW +DG C++ DILAA+DDA+ DGVD+IS S G + P R +F IGSF+A++
Sbjct: 242 YKVCW---NDG-CSDTDILAAYDDAIADGVDIISLSVGGANP-RHYFVDAIAIGSFHAVE 296
Query: 318 HGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTE- 376
G+ S GN GP +++PW + VAAS++DR F T++ + + S G S + +
Sbjct: 297 RGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDN 356
Query: 377 -----VKAKLV--EAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVK----TEEAEAA 425
V + + F C ++ G++V+C ++ G + + A
Sbjct: 357 QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGV 416
Query: 426 AKKANASGLIFAEPM-TELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTS 484
+N + P+ + ++ D++ T+R Y + P I + T+
Sbjct: 417 LMTSNTRDYADSYPLPSSVLDPNDLLATLRY---------IYSIRSPGATIFK----STT 463
Query: 485 IGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDG--RSVKW 542
I AP V FSSRGP+ + D++KPDI+ PG+ +LAAW P++ P G R+ +
Sbjct: 464 ILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW-----PSVAPVGGIRRNTLF 518
Query: 543 NFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSD 602
N SGTSMSCPH++G+ +K+ +P WSPAAI+SALMTTA + +
Sbjct: 519 NIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNP---------QA 569
Query: 603 PFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQ 662
F G+GH+NP+KA+ PGL+YD +DY+ FL GY + +I + ++C
Sbjct: 570 EFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRI------TGDYSACTS 623
Query: 663 AHKIPNSFINYPS--ITVSNLQS-TMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPR 719
+ +NYPS ++VS Q+ RT+ +V + + Y A + P G+ + V P
Sbjct: 624 GNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQA-STYRAMISAPQGLTISVNPN 682
Query: 720 VLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVV 766
VL F+ + S+ ++++ +G +VWSDG HYVRSP+ +
Sbjct: 683 VLSFNGLGDRKSFTLTVR--GSIKGFVVSASLVWSDGVHYVRSPITI 727
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 152/600 (25%), Positives = 253/600 (42%), Gaps = 122/600 (20%)
Query: 71 YKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTR------SWDFMGLILDNT- 123
Y+ FSGFS KL +++ L +++V +++ + K + S D + +D++
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSA 165
Query: 124 ---GEVTPVQLAY-GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQ 179
G L Y G I V I DTGV P + +KG +DP+
Sbjct: 166 PYIGANDAWDLGYTGKGIKVAIIDTGVE------YNHPDLKKNFGQYKGYDFVDNDYDPK 219
Query: 180 KACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFF 239
+ P +T+ HGTH A G++A N
Sbjct: 220 ETPTGD----------------PRGEATD-----------HGTHVA----GTVAAN---- 244
Query: 240 GLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPP 299
G +G AP A L Y++ G T +++A + A+ DG DV++ S G S
Sbjct: 245 ----GTIKGVAPDATLLAYRVLG---PGGSGTTENVIAGVERAVQDGADVMNLSLGNSLN 297
Query: 300 LRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSID--RTFPT 357
P +A++ + AM GV V S GN GP W++ +S + T
Sbjct: 298 -NPDWATSTALDW--AMSEGVVAVTSNGNSGPNG--------WTVGSPGTSREAISVGAT 346
Query: 358 EIVVNSDFSIVGESFISTEV---------------KAKLVEAFTYFADGICKCENWMGRK 402
++ +N ++++ S+ S +V + +LVEA GI + +++ G+
Sbjct: 347 QLPLN-EYAVTFGSYSSAKVMGYNKEDDVKALNNKEVELVEA------GIGEAKDFEGKD 399
Query: 403 ATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDI----IPTVRIDIA 458
TG+V + GS+ + AKKA A G++ ++ I E ++ +PT+++ +
Sbjct: 400 LTGKVAVV--KRGSIAFVDKADNAKKAGAIGMVVYNNLSGEI-EANVPGMSVPTIKLSLE 456
Query: 459 QGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI 518
G +L L +L ++ K VA FSSRGP + ++KPDI+APG+
Sbjct: 457 DGEKLVSALKAGETKTTFKL-----TVSKALGEQVADFSSRGPV-MDTWMIKPDISAPGV 510
Query: 519 GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSAL 578
+++ P + P + + GTSM+ PH++G VA+IK A P WS I++A+
Sbjct: 511 NIVSTIPTHDPD-------HPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAI 563
Query: 579 MTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIG 638
M TA T S + + GAG M A+ + Y FL+ G
Sbjct: 564 MNTAVTLKDSDGEVYPHNAQ--------GAGSARIMNAIKADSLVSPGSYSYGTFLKENG 615
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P00782|SUBT_BACAM Subtilisin BPN' OS=Bacillus amyloliquefaciens GN=apr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 279 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 319
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 320 --KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 362
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 363 KLGDSFYYGKGLINVQAA 380
|
Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Has a high substrate specificity to fibrin. Bacillus amyloliquefaciens (taxid: 1390) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 6 EC: 2 |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNF-QSGTSM 550
TVA FSSRGP+ + KPDI APG+ +++ PN+ L R F SGTSM
Sbjct: 328 TVASFSSRGPTVYGKE--KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMSGTSM 385
Query: 551 SCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGH 610
+ P +G+ ALI +P+ +P ++ L K DP GAG
Sbjct: 386 ATPICAGIAALILQQNPDLTPDEVKELLKN-------------GTDKWKDEDPNIYGAGA 432
Query: 611 IN 612
+N
Sbjct: 433 VN 434
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 144/394 (36%), Gaps = 80/394 (20%)
Query: 220 HGTHTASTAAGSIAKNAGFFGLGRGIAR---GGAPRARLAVYKICWGKDSDGKCTEADIL 276
HG H AG I N G G A+ G AP A+L K+ D+ A ++
Sbjct: 281 HGMH----VAGIIGAN----GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLV 332
Query: 277 AAFDDALHDGVDVISASFG--------ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGN 328
+A +D+ G DV++ S G E P L NA + G V S GN
Sbjct: 333 SAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQ---------NANESGTAAVISAGN 383
Query: 329 DGPEPSLVQNV--------------APWS---ICVAASSIDRTFPTEIVVNSD------- 364
G S + V +P + AS+ + T+ V +D
Sbjct: 384 SGTSGSATEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTGLQLG 443
Query: 365 ---FSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEE 421
+ F + + K A G A + + G ++
Sbjct: 444 PETIQLSSHDFTGSFDQKKFY--IVKDASGNLSKGALADYTADAKGKIAIVKRGEFSFDD 501
Query: 422 AEAAAKKANASGLIF------AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPI 475
+ A+ A A+GLI A PMT IA PT + G +L D++ P +
Sbjct: 502 KQKYAQAAGAAGLIIVNTDGTATPMTS-IALTTTFPTFGLSSVTGQKLVDWVTAHPDDSL 560
Query: 476 -VQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLP 534
V++ + K ++ F+S GP +S KPDITAPG + + N
Sbjct: 561 GVKITLAMLPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNIWSTQNNN------- 611
Query: 535 SDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN 568
+ SGTSM+ P ++G AL+K A N
Sbjct: 612 ------GYTNMSGTSMASPFIAGSQALLKQALNN 639
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 179/475 (37%), Gaps = 83/475 (17%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G+ VV + DTG+ P + + V+ K+D +K + G RY+
Sbjct: 208 GEGTVVSVIDTGIDPTHKDMRLSDDKD----------VKLTKYDVEKFTDTAKHG-RYFT 256
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIAR---GGA 250
+ YG A N HG H AG I N G G + G A
Sbjct: 257 S--KVPYGFNYADNNDTITDDTVDEQHGMH----VAGIIGAN----GTGDDPTKSVVGVA 306
Query: 251 PRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADI 310
P A+L K+ D+ A +++A +D+ G DV++ S G + + +I
Sbjct: 307 PEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTL--EDPEI 364
Query: 311 GSF-NAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRT-----FPTEIVVNSD 364
+ NA + G V S GN G S Q V + + + T T + +
Sbjct: 365 AAVQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASAEN 424
Query: 365 FSIVGESFISTEVKAKLVEAFTY------FADGICKCENWMGRKATGRVV---------- 408
++ ++ T+ K + T F + + ++ + A+G +
Sbjct: 425 TDVISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGDLSKGAAADYTAD 484
Query: 409 ----LCFSTMGSVKTEEAEAAAKKANASGLIF------AEPMTELIAEVDIIPTVRIDIA 458
+ G + + + A+ A A+GLI A P+T I PT +
Sbjct: 485 AKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTS-IRLTTTFPTFGLSSK 543
Query: 459 QGTQLRDYLAQFPRLPI-----VQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDI 513
G +L D++ P + + L P++ K ++ F+S GP +S KPDI
Sbjct: 544 TGQKLVDWVTAHPDDSLGVKIALTLLPNQ----KYTEDKMSDFTSYGP--VSNLSFKPDI 597
Query: 514 TAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN 568
TAPG + + N + SGTSM+ P ++G AL+K A N
Sbjct: 598 TAPGGNIWSTQNNN-------------GYTNMSGTSMASPFIAGSQALLKQALNN 639
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 177/444 (39%), Gaps = 60/444 (13%)
Query: 220 HGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILA-A 278
HGTH +G ++ NA G P A+L + ++ +G A A A
Sbjct: 193 HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEI---VNGLADYARNYAQA 245
Query: 279 FDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDG-------- 330
DA++ G VI+ SFG + A GV++V S GND
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 331 -----PEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVE 383
P+ +V A ++ VA+ S D+ +V +D E + + + + +
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQDKEMPVLSTNRFEPNK 365
Query: 384 AFTY-FADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE 442
A+ Y +A+ K +++ K G++ L G + ++ A AKKA A G++ + +
Sbjct: 366 AYDYAYANRGMKEDDFKDVK--GKIALI--ERGDIDFKDKVANAKKAGAVGVLIYDNQDK 421
Query: 443 ----LIAEVDIIPTVRIDIAQGTQLRDYLAQ---FPRLPIVQLKPSKTSIGKVPAPTVAY 495
+ VD +P I G L+D + F P V S T + +
Sbjct: 422 GFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATPKVLPTASGTKLSR-------- 473
Query: 496 FSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHV 555
FSS G ++ +KPDI APG +L++ N K+ SGTSMS P V
Sbjct: 474 FSSWGLTADGN--IKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLV 518
Query: 556 SGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS-DPFDIGAGHINPM 614
+G++ L++ + P S + A S + L K P GAG ++
Sbjct: 519 AGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAK 578
Query: 615 KAMDPGL-IYDLKPTDYIVFLRNI 637
KA + + D T V L N+
Sbjct: 579 KASAATMYVTDKDNTSSKVHLNNV 602
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| 224056933 | 791 | predicted protein [Populus trichocarpa] | 0.980 | 0.969 | 0.698 | 0.0 | |
| 297746504 | 772 | unnamed protein product [Vitis vinifera] | 0.971 | 0.984 | 0.654 | 0.0 | |
| 297803462 | 744 | predicted protein [Arabidopsis lyrata su | 0.906 | 0.952 | 0.629 | 0.0 | |
| 147783437 | 681 | hypothetical protein VITISV_020248 [Viti | 0.855 | 0.982 | 0.660 | 0.0 | |
| 18416730 | 746 | Subtilisin-like serine endopeptidase fam | 0.906 | 0.950 | 0.627 | 0.0 | |
| 414864893 | 818 | TPA: putative subtilase family protein [ | 0.947 | 0.905 | 0.522 | 0.0 | |
| 414864895 | 796 | TPA: putative subtilase family protein [ | 0.943 | 0.927 | 0.521 | 0.0 | |
| 255564814 | 700 | conserved hypothetical protein [Ricinus | 0.759 | 0.848 | 0.627 | 0.0 | |
| 22773236 | 663 | Putatvie subtilisin-like serine protease | 0.801 | 0.945 | 0.554 | 0.0 | |
| 218192128 | 702 | hypothetical protein OsI_10097 [Oryza sa | 0.796 | 0.887 | 0.557 | 0.0 |
| >gi|224056933|ref|XP_002299096.1| predicted protein [Populus trichocarpa] gi|222846354|gb|EEE83901.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/773 (69%), Positives = 639/773 (82%), Gaps = 6/773 (0%)
Query: 1 MASYLHGFWGLSLSLSLSFVHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASE 60
MA+YL FWGL LSLSL F+ S ST SHVY+VYLG ++ DP + SKSH+QLLS+VF+SE
Sbjct: 1 MATYLQCFWGLFLSLSLYFIQSEST-SHVYVVYLGRSQFHDPLVTSKSHIQLLSNVFSSE 59
Query: 61 EDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLIL 120
E+AK+S+LY YK+ FSGFSAKLNS+QA +LA + VIS+F S+VLKLHTTRSWDF+GL L
Sbjct: 60 EEAKQSMLYSYKHGFSGFSAKLNSTQATTLANTKGVISVFRSKVLKLHTTRSWDFLGLTL 119
Query: 121 DNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQK 180
+GEVTP+QL YGDD+VVG+FDTGVWPESESF+EE + PIPSSWKG CV+GE F+P+
Sbjct: 120 -YSGEVTPLQLTYGDDVVVGVFDTGVWPESESFKEEQGLGPIPSSWKGKCVKGEDFEPKM 178
Query: 181 ACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFG 240
CNRKLIGARYY++GFE+E+G LN S N EYRSARDFLGHGTHTASTA GS+ KNA F
Sbjct: 179 DCNRKLIGARYYLQGFEQEFGSLNTSGNPEYRSARDFLGHGTHTASTAVGSMVKNASFLD 238
Query: 241 LGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPL 300
G ARGGAPRARLAVYK+CWGK+ DG C EADILAAFDDALHDGV++ISASFG PPL
Sbjct: 239 FALGTARGGAPRARLAVYKVCWGKNLDGNCAEADILAAFDDALHDGVNIISASFGSDPPL 298
Query: 301 RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIV 360
PFF+S+ADIGSF+AMQ GV+ VFS GN GP+PSLV NVAPW+I VAASSIDR FPTEIV
Sbjct: 299 TPFFSSSADIGSFHAMQLGVSSVFSAGNAGPDPSLVGNVAPWTISVAASSIDRVFPTEIV 358
Query: 361 VNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420
++S+FS++GES I+ E+ +LV AF+YFAD C ENW R A +++LCFS G V +
Sbjct: 359 IDSNFSVMGESLITNEINGRLVSAFSYFADRACLMENWNKRVAKRKIILCFSNRGPVPSA 418
Query: 421 E-AEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLK 479
A+AA A+ SGLIF EP T IA+VDIIPTVR+D+ QG +++ Y+AQ + P+V++
Sbjct: 419 GIAQAAVLAASGSGLIFVEPPTMQIADVDIIPTVRVDVGQGNKIQIYIAQSSQNPVVKIL 478
Query: 480 PSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRS 539
PSKT+IGK PAP VA FSSRGPS ISPDILKPD+TAPG+ +LAAWP T PTLLP D R
Sbjct: 479 PSKTAIGKSPAPVVASFSSRGPSPISPDILKPDVTAPGVTILAAWPAKTSPTLLPFDDRR 538
Query: 540 VKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMK 599
V WNFQSGTSMSCPHVSGVVAL+KSAHP+WSPAAIRSA+MTTAYTRD + DSILAGGS K
Sbjct: 539 VNWNFQSGTSMSCPHVSGVVALLKSAHPDWSPAAIRSAVMTTAYTRDNTFDSILAGGSRK 598
Query: 600 VSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTS 659
VSDPFDIGAGHI+P KAMDPGL+YD+K DYI+FL NIGY ++QIN + LPS TS
Sbjct: 599 VSDPFDIGAGHIHPSKAMDPGLVYDMKTRDYIIFLCNIGYNKNQINMLVLPS--TGTDTS 656
Query: 660 CPQAHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPR 719
C H+ NS INYPSITVSNLQSTMTIKRTV+NVG+K AIYF S+VKP GVEV++WPR
Sbjct: 657 CSHVHQT-NSNINYPSITVSNLQSTMTIKRTVRNVGRKTTAIYFVSIVKPHGVEVLIWPR 715
Query: 720 VLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVVFVNNTH 772
+L+FS FKEE+SY+V+LKPLK SQGR+DFG+IVWSDGFH VRSPLVV VNN++
Sbjct: 716 ILIFSCFKEELSYFVTLKPLKKSQGRYDFGEIVWSDGFHKVRSPLVVLVNNSN 768
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746504|emb|CBI16560.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/770 (65%), Positives = 610/770 (79%), Gaps = 10/770 (1%)
Query: 1 MASYLHGFWGLSLSLSLSFVHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASE 60
MAS FWGL SLS+ F+ +T T S+VYIVYLG N+ DP L SK H QLLS+VF E
Sbjct: 1 MASSFQCFWGLFFSLSIYFIQATPT-SNVYIVYLGLNQSHDPLLTSKHHHQLLSNVFECE 59
Query: 61 EDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLIL 120
E AK+S+LY YK+SFSGF+AKLN +QA LA+ME V+S+F S+ +KLHTTRSWDFMGL L
Sbjct: 60 EAAKQSILYHYKHSFSGFAAKLNENQANILAKMEGVVSVFRSRTMKLHTTRSWDFMGLTL 119
Query: 121 DNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQK 180
D + EVTP+QLAYGDDIVVG+ D+GVWPES+SFQEE + PIPS WKG CV+GE FDP++
Sbjct: 120 DESSEVTPLQLAYGDDIVVGVLDSGVWPESKSFQEESCLGPIPSCWKGKCVKGEMFDPKR 179
Query: 181 ACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFG 240
CNRKLIGA+YY KGFEEE+GP+N T +Y+S RDF+GHGTHTASTA GS+ KN FG
Sbjct: 180 DCNRKLIGAQYYHKGFEEEFGPVNPRT-FDYKSPRDFVGHGTHTASTAVGSVVKNVSSFG 238
Query: 241 LGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPL 300
G+G ARGGAPR RLAVYK+CW + +G C+EADI+A FD+ALHDGV VISASFG PPL
Sbjct: 239 FGQGTARGGAPRTRLAVYKVCWNEGLEGICSEADIMAGFDNALHDGVHVISASFGGGPPL 298
Query: 301 RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIV 360
RPFF S A IGSF+AMQ GV+VVFS GNDGP PS V NVAPWSICVAAS+IDR+FPT+I+
Sbjct: 299 RPFFKSQAGIGSFHAMQLGVSVVFSAGNDGPAPSSVGNVAPWSICVAASTIDRSFPTKIL 358
Query: 361 VNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420
++ S++GE F++ +VK KL A T+F DG C EN + A G V+LCFS S
Sbjct: 359 LDKTISVMGEGFVTKKVKGKLAPARTFFRDGNCSPENSRNKTAEGMVILCFSNTPS-DIG 417
Query: 421 EAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKP 480
AE A ASGLI+A P+T+ IAE DIIPTVRI+ QGT+LR Y+ P+ P+V + P
Sbjct: 418 YAEVAVVNIGASGLIYALPVTDQIAETDIIPTVRINQNQGTKLRQYIDSAPK-PVV-ISP 475
Query: 481 SKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSV 540
SKT+IGK PAPT+A+FSSRGP+++S DILKPDI+APG ++AAWPP TPP SD RSV
Sbjct: 476 SKTTIGKSPAPTIAHFSSRGPNTVSSDILKPDISAPGASIMAAWPPVTPPAPSSSDKRSV 535
Query: 541 KWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKV 600
WNF SGTSM+CPHV+GVVALIKSAHP+WSPAAI+SA+MTTAY RD++HDSILAGGS KV
Sbjct: 536 NWNFLSGTSMACPHVTGVVALIKSAHPDWSPAAIKSAIMTTAYNRDSTHDSILAGGSRKV 595
Query: 601 SDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSC 660
+DPFDIGAGH+NP+KAMDPGL+YD++ +DYI +L +IGYT++QI I LP T +
Sbjct: 596 ADPFDIGAGHLNPLKAMDPGLVYDMQASDYIAYLCDIGYTREQIKAIVLPG---THVSCS 652
Query: 661 PQAHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRV 720
+ I N +NYPSITVSNLQST+TIKRTV+NVG KK A+YF S+V P GV+V +WPR+
Sbjct: 653 KEDQSISN--LNYPSITVSNLQSTVTIKRTVRNVGPKKTAVYFVSIVNPCGVKVSIWPRI 710
Query: 721 LVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVVFVNN 770
L FS FKEE +YYV+LKP K SQGR+DFG+IVW+DGFHYVRSPLVV VNN
Sbjct: 711 LFFSCFKEEHTYYVTLKPQKKSQGRYDFGEIVWTDGFHYVRSPLVVSVNN 760
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803462|ref|XP_002869615.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315451|gb|EFH45874.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/720 (62%), Positives = 576/720 (80%), Gaps = 11/720 (1%)
Query: 58 ASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMG 117
S+ED K+S+LY Y FSGFSAKLN+SQA SLA++++VI++F+S+ LKLHTTRSWDF+G
Sbjct: 22 CSKEDGKQSMLYSYNNGFSGFSAKLNASQATSLAKLDQVITVFKSKSLKLHTTRSWDFLG 81
Query: 118 LILDNTGEVTPVQLAYGDDIVVGIFDTGV--WPESESFQEEPSMSPIPSSWKGTCVRGEK 175
L +D P QLAYG DIVVGIFDTG+ +P S F+E P IPSSWKG CV GE+
Sbjct: 82 LAVDYPRRTPPPQLAYGSDIVVGIFDTGLLFFPNSSFFREPPEAKSIPSSWKGNCVGGEE 141
Query: 176 FDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKN 235
F+P CNRKLIGAR+Y++GFEE YGP++ + + EYRS RD+LGHGTHTASTA GS+ +N
Sbjct: 142 FNPSVHCNRKLIGARFYLRGFEETYGPIDFTRDPEYRSPRDYLGHGTHTASTAVGSVVRN 201
Query: 236 -AGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294
+GF GLGRG ARGGAP ARLAV+K CWGKD +G CTEADILAAFDDA+H+GV+VISASF
Sbjct: 202 VSGFSGLGRGTARGGAPSARLAVFKTCWGKDLEGVCTEADILAAFDDAIHNGVNVISASF 261
Query: 295 GESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRT 354
G SPPL PFF S+ADIG+F+A + G++VVFSGGNDGP+P +VQNVAPW++ VAAS++DR+
Sbjct: 262 GYSPPLSPFFESSADIGAFHAAERGISVVFSGGNDGPDPGVVQNVAPWAVSVAASTVDRS 321
Query: 355 FPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTM 414
FPT IV++ F++ G+S IS E+ L A TYF G+CK ENW+ + A G ++LCFST+
Sbjct: 322 FPTRIVIDGSFTLTGQSLISQEITGTLALATTYFNGGVCKWENWLKKLANGTIILCFSTL 381
Query: 415 GSVK-TEEAEAAAKKANASGLIFA-EPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPR 472
G V+ EEA+AAA +ANA LIFA P +L EVD+IPTVR+DI GT +R+YLA+ P
Sbjct: 382 GPVQFIEEAQAAAIRANALALIFAASPTRQLAEEVDMIPTVRVDILHGTMIRNYLARLPT 441
Query: 473 LPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTL 532
+PI+++ PSKT IG+ AP+VAYFSSRGPSS+SPDILKPDITAPGIG+LAAWP TPPTL
Sbjct: 442 VPILKIGPSKTVIGETTAPSVAYFSSRGPSSLSPDILKPDITAPGIGILAAWPHKTPPTL 501
Query: 533 LPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSI 592
LP D RS++WNFQSGTSMSCPHV+G++AL++SAHP+WSP+AIRSA+MTTAYTRDT++D I
Sbjct: 502 LPGDHRSIEWNFQSGTSMSCPHVAGIMALLQSAHPDWSPSAIRSAIMTTAYTRDTTYDLI 561
Query: 593 LAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFL-PS 651
L+GGSMK +DPFDIGAGHINP+KAMDPGL+Y + +Y++F+ NIGYT QI + L P
Sbjct: 562 LSGGSMKSTDPFDIGAGHINPLKAMDPGLVYTTRTEEYVLFMCNIGYTDQQIKSMVLHPE 621
Query: 652 PDETERTSCPQAHKI-PNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPG 710
P T+C +H N+ NYPSIT+ +L+ T TIKRT+ NVG KN +YF +++P
Sbjct: 622 PS----TTCLPSHLYRTNADFNYPSITIPSLRFTRTIKRTLSNVGPNKNTVYFVDIIRPM 677
Query: 711 GVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVVFVNN 770
GVEVV+WPR+LVFS ++E SYYV+ KP ++ GR+ FG+I+W+DG H VRSPLVVF++N
Sbjct: 678 GVEVVIWPRILVFSKCQQEHSYYVTFKPTEIYSGRYVFGEIMWTDGLHRVRSPLVVFLSN 737
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147783437|emb|CAN77487.1| hypothetical protein VITISV_020248 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/678 (66%), Positives = 542/678 (79%), Gaps = 9/678 (1%)
Query: 93 MEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESES 152
ME V+S+F S+ +KLHTTRSWDFMGL LD + EVTP+QLAYGDDIVVG+ D+GVWPES+S
Sbjct: 1 MEGVVSVFRSRTMKLHTTRSWDFMGLTLDESSEVTPLQLAYGDDIVVGVLDSGVWPESKS 60
Query: 153 FQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYR 212
FQEE + PIPS WKG CV+GE FDP++ CNRKLIGA+YY KGFEEE+GP+N T +Y+
Sbjct: 61 FQEESCLGPIPSCWKGKCVKGEMFDPKRDCNRKLIGAQYYHKGFEEEFGPVNPRT-FDYK 119
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
S RDF+GHGTHTASTA GS+ KN FG G+G ARGGAPR RLAVYK+CW + +G C+E
Sbjct: 120 SPRDFVGHGTHTASTAVGSVVKNVSSFGFGQGTARGGAPRTRLAVYKVCWNEGLEGICSE 179
Query: 273 ADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPE 332
ADI+A FD+ALHDGV VISASFG PPLRPFF S A IGSF+AMQ GV+VVFS GNDGP
Sbjct: 180 ADIMAGFDNALHDGVHVISASFGGGPPLRPFFKSQAGIGSFHAMQLGVSVVFSAGNDGPA 239
Query: 333 PSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGI 392
PS V NVAPWSICVAAS+IDR+FPT+I+++ S++GE F++ +VK KL A T+F DG
Sbjct: 240 PSSVGNVAPWSICVAASTIDRSFPTKILLDKTISVMGEGFVTKKVKGKLAPARTFFRDGN 299
Query: 393 CKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPT 452
C EN + A G V+LCFS S AE A ASGLI+A P+T+ IAE DIIPT
Sbjct: 300 CSPENSRNKTAEGMVILCFSNTPS-DIGYAEVAVVNIGASGLIYALPVTDQIAETDIIPT 358
Query: 453 VRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPD 512
VRI+ QGT+LR Y+ P+ P+V + PSKT+IGK PAPT+A+FSSRGP+++S DILKPD
Sbjct: 359 VRINQNQGTKLRQYIDSAPK-PVV-ISPSKTTIGKSPAPTIAHFSSRGPNTVSSDILKPD 416
Query: 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPA 572
I+APG ++AAWPP TPP SD RSV WNF SGTSM+CPHV+GVVALIKSAHP+WSPA
Sbjct: 417 ISAPGASIMAAWPPVTPPAPSSSDKRSVNWNFLSGTSMACPHVTGVVALIKSAHPDWSPA 476
Query: 573 AIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIV 632
AI+SA+MTTAY RD++HDSILAGGS KV+DPFDIGAGH+NP+KAMDPGL+YD++ +DYI
Sbjct: 477 AIKSAIMTTAYNRDSTHDSILAGGSRKVADPFDIGAGHLNPLKAMDPGLVYDMQASDYIA 536
Query: 633 FLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSFINYPSITVSNLQSTMTIKRTVK 692
+L +IGYT++QI I LP T + + I N +NYPSITVSNLQST+TIKRTV+
Sbjct: 537 YLCDIGYTREQIKAIVLPG---THVSCSKEDQSISN--LNYPSITVSNLQSTVTIKRTVR 591
Query: 693 NVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIV 752
NVG KK A+YF S+V P GV+V +WPR+L FS FKEE +YYV+LKP K SQGR+DFG+IV
Sbjct: 592 NVGPKKTAVYFVSIVNPCGVKVSIWPRILFFSCFKEEHTYYVTLKPQKKSQGRYDFGEIV 651
Query: 753 WSDGFHYVRSPLVVFVNN 770
W+DGFHYVRSPLVV VNN
Sbjct: 652 WTDGFHYVRSPLVVSVNN 669
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18416730|ref|NP_567744.1| Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana] gi|4539429|emb|CAB38962.1| subtilisin protease-like [Arabidopsis thaliana] gi|7269485|emb|CAB79488.1| subtilisin protease-like [Arabidopsis thaliana] gi|332659786|gb|AEE85186.1| Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/732 (62%), Positives = 579/732 (79%), Gaps = 23/732 (3%)
Query: 58 ASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMG 117
S++DA++S+LY Y F GFSAKLNS+QAASLA++ +VI++F+S+ LKLHTTRSWDF+G
Sbjct: 12 CSKDDAEQSMLYSYNNGFLGFSAKLNSTQAASLAKLNQVITVFKSKSLKLHTTRSWDFLG 71
Query: 118 LILDNTGEVTPVQLAYGDDIVVGIFDTG--------------VWPESESFQEEPSMSPIP 163
L +DN P QLAYG DIVVGIFDTG +WPESESF+E P PIP
Sbjct: 72 LAVDNARRTPPPQLAYGSDIVVGIFDTGLFISLKLLLLSILGIWPESESFRETPEAKPIP 131
Query: 164 SSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTH 223
SSW G CV GE FDP CNRKLIGAR+Y++GFEE YG ++ + + EYRS RD+LGHGTH
Sbjct: 132 SSWNGKCVGGEDFDPSVHCNRKLIGARFYLRGFEETYGTIDFTRDPEYRSPRDYLGHGTH 191
Query: 224 TASTAAGSIAKN-AGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282
TASTA GS+ +N +GFFGLGRG ARGGAP ARLAV+K CWGKD +G CTEADILAAFDDA
Sbjct: 192 TASTAVGSVVRNVSGFFGLGRGTARGGAPLARLAVFKTCWGKDLEGVCTEADILAAFDDA 251
Query: 283 LHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPW 342
+HDGV VISASFG SPPL PFF S+ADIG+F+A + G++VVFS GNDGP+P +VQNVAPW
Sbjct: 252 IHDGVHVISASFGYSPPLSPFFESSADIGAFHAAERGISVVFSTGNDGPDPGVVQNVAPW 311
Query: 343 SICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRK 402
++ VAAS++DR+FPT IV++ F++ G+S IS E+ L A TYF G+CK ENWM +
Sbjct: 312 AVSVAASTVDRSFPTRIVIDGSFTLTGQSLISQEITGTLALATTYFNGGVCKWENWMKKL 371
Query: 403 ATGRVVLCFSTMGSVK-TEEAEAAAKKANASGLIFA-EPMTELIAEVDIIPTVRIDIAQG 460
A ++LCFST+G V+ EEA+AAA +ANA LIFA P +L EVD+IPTVR+DI G
Sbjct: 372 ANETIILCFSTLGPVQFIEEAQAAAIRANALALIFAASPTRQLAEEVDMIPTVRVDILHG 431
Query: 461 TQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520
T++R+YLA+ P +P+V++ PSKT IG+ AP+VAYFSSRGPSS+SPDILKPDITAPGIG+
Sbjct: 432 TRIRNYLARSPTVPMVKIGPSKTVIGETTAPSVAYFSSRGPSSLSPDILKPDITAPGIGI 491
Query: 521 LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMT 580
LAAWPP TPPTLLP D RS++WNFQSGTSMSCPHV+GV+AL++SAHP+WSP+AIRSA+MT
Sbjct: 492 LAAWPPRTPPTLLPGDHRSIEWNFQSGTSMSCPHVAGVMALLQSAHPDWSPSAIRSAIMT 551
Query: 581 TAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYT 640
TAYTRDTS+D IL+GGSMK +DPFDIGAGHINP+KAMDPGL+Y+ + DY++F+ NIGYT
Sbjct: 552 TAYTRDTSYDLILSGGSMKSTDPFDIGAGHINPLKAMDPGLVYNTRTDDYVLFMCNIGYT 611
Query: 641 QDQINKIFL-PSPDETERTSCPQAHKI-PNSFINYPSITVSNLQSTMTIKRTVKNVGQKK 698
+I + L P P T+C +H N+ NYPSIT+ +L+ T TIKRTV NVG K
Sbjct: 612 DQEIKSMVLHPEPS----TTCLPSHSYRTNADFNYPSITIPSLRLTRTIKRTVSNVGPNK 667
Query: 699 NAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFH 758
N +YF +++P GVEV++WPR+LVFS ++E SYYV+ KP ++ GR+ FG+I+W++G H
Sbjct: 668 NTVYFVDIIRPVGVEVLIWPRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTNGLH 727
Query: 759 YVRSPLVVFVNN 770
VRSP+VVF++N
Sbjct: 728 RVRSPVVVFLSN 739
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414864893|tpg|DAA43450.1| TPA: putative subtilase family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/791 (52%), Positives = 548/791 (69%), Gaps = 50/791 (6%)
Query: 23 TSTASH--VYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSA 80
T+ ASH V+IVYLGHN DP+L + SHLQLLS+VF +A+ ++LY Y FSGF+A
Sbjct: 24 TAPASHAQVHIVYLGHNNDLDPSLTTDSHLQLLSTVFTEPNEAREAILYSYSCGFSGFAA 83
Query: 81 KLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILD-NTGEVTPVQLAYGDDIVV 139
LNS+QA +L+ + V+S+F S++L++HTTRSWDFMGL L +T + + L +GDD++V
Sbjct: 84 LLNSTQATTLSGTDGVVSVFRSRMLEVHTTRSWDFMGLRLHMHTEQSSQRHLKFGDDVIV 143
Query: 140 GIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE 199
G+ DTGVWPES+SF+++P P+PSSWKGTCV G++FDP ACNRKLIGARYY+ GFE E
Sbjct: 144 GVLDTGVWPESKSFRDDPHYGPVPSSWKGTCVVGDEFDPAAACNRKLIGARYYLAGFESE 203
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRAR-LAVY 258
GPLN S EYRS RD +GHGTHTASTA GS+A NA +FG G A G LAVY
Sbjct: 204 LGPLNTSDGSEYRSPRDRVGHGTHTASTAVGSVAPNASYFGGLGGGAARGGAPRARLAVY 263
Query: 259 KICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQH 318
K+CW +D G+C++ADILAAFDDAL DGV V+SAS G PPL P +++ +IG+F+AMQ
Sbjct: 264 KVCWYRDLTGRCSDADILAAFDDALCDGVHVVSASLGSPPPLMPLLSTSTEIGAFHAMQR 323
Query: 319 GVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIV---------- 368
GV VFS GNDGP+ S+VQNV+PW + VAASSIDR FPT I + ++ SIV
Sbjct: 324 GVVAVFSAGNDGPDASMVQNVSPWGLTVAASSIDRRFPTVITLGNNASIVVGFFLLLRAL 383
Query: 369 ------------------GESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLC 410
GESF+ +K LV++ + F DG A G++VLC
Sbjct: 384 PWARMIYHMTCLAYVVAQGESFLVKAMKNGLVDSSSVFTDG----------AAWGKIVLC 433
Query: 411 FSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQF 470
F+TMG V ++ A A N +G+IFA+ ++ ++ PTV +D+ QGTQ+ +Y+ +
Sbjct: 434 FATMGGVSSDGAALAVYAGNGAGVIFADTISRKSSQDSFWPTVHVDLYQGTQILNYI-RD 492
Query: 471 PRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPP 530
R P V++ PSKT +G+ PAP VAYFSSRGPSS+SP ILKPD+TAPG+ +LAAWPP + P
Sbjct: 493 SRKPTVRISPSKTVVGETPAPAVAYFSSRGPSSVSPKILKPDVTAPGVNILAAWPPKSSP 552
Query: 531 TLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHD 590
T++P D R +WN SGTSMSCPHVSG+ A+IKS HP WSPAA++SALMTTAY D + D
Sbjct: 553 TVIPLDKRLTEWNMDSGTSMSCPHVSGIAAVIKSVHPTWSPAAVKSALMTTAYMYDGTSD 612
Query: 591 SILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLP 650
+ AGG++K +D FD+GAGH++P++A+DPGL+YD D++VFL ++GYT+ I + LP
Sbjct: 613 VMQAGGTVKAADAFDVGAGHVDPLRALDPGLVYDAGARDHVVFLCSLGYTEAAIRNMVLP 672
Query: 651 SPDETERTSCPQ---AHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVV 707
P TSCP+ P + +NYP+I + +L T+T+KRTV NVG ++A+Y A+V
Sbjct: 673 QP--ALDTSCPRGGGGGGGPEADLNYPAIVLPDLGGTVTVKRTVTNVGANRDAVYRAAVA 730
Query: 708 KPGGVEVVVWPRVLVFSWFK--EEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLV 765
P G VWPR L FS E+ SYY+++ P K+S+GRFDFG++VWSDGFH VR+PLV
Sbjct: 731 SPQGARAEVWPRELAFSARPGGEQASYYLTVTPAKLSRGRFDFGEVVWSDGFHRVRTPLV 790
Query: 766 VFVNNTHLDSV 776
V V N D V
Sbjct: 791 VRVTNLPDDGV 801
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414864895|tpg|DAA43452.1| TPA: putative subtilase family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/786 (52%), Positives = 543/786 (69%), Gaps = 48/786 (6%)
Query: 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSS 85
A V+IVYLGHN DP+L + SHLQLLS+VF +A+ ++LY Y FSGF+A LNS+
Sbjct: 7 AYKVHIVYLGHNNDLDPSLTTDSHLQLLSTVFTEPNEAREAILYSYSCGFSGFAALLNST 66
Query: 86 QAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILD-NTGEVTPVQLAYGDDIVVGIFDT 144
QA +L+ + V+S+F S++L++HTTRSWDFMGL L +T + + L +GDD++VG+ DT
Sbjct: 67 QATTLSGTDGVVSVFRSRMLEVHTTRSWDFMGLRLHMHTEQSSQRHLKFGDDVIVGVLDT 126
Query: 145 GVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLN 204
GVWPES+SF+++P P+PSSWKGTCV G++FDP ACNRKLIGARYY+ GFE E GPLN
Sbjct: 127 GVWPESKSFRDDPHYGPVPSSWKGTCVVGDEFDPAAACNRKLIGARYYLAGFESELGPLN 186
Query: 205 ASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRAR-LAVYKICWG 263
S EYRS RD +GHGTHTASTA GS+A NA +FG G A G LAVYK+CW
Sbjct: 187 TSDGSEYRSPRDRVGHGTHTASTAVGSVAPNASYFGGLGGGAARGGAPRARLAVYKVCWY 246
Query: 264 KDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVV 323
+D G+C++ADILAAFDDAL DGV V+SAS G PPL P +++ +IG+F+AMQ GV V
Sbjct: 247 RDLTGRCSDADILAAFDDALCDGVHVVSASLGSPPPLMPLLSTSTEIGAFHAMQRGVVAV 306
Query: 324 FSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIV--------------- 368
FS GNDGP+ S+VQNV+PW + VAASSIDR FPT I + ++ SIV
Sbjct: 307 FSAGNDGPDASMVQNVSPWGLTVAASSIDRRFPTVITLGNNASIVVGFFLLLRALPWARM 366
Query: 369 -------------GESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMG 415
GESF+ +K LV++ + F DG A G++VLCF+TMG
Sbjct: 367 IYHMTCLAYVVAQGESFLVKAMKNGLVDSSSVFTDG----------AAWGKIVLCFATMG 416
Query: 416 SVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPI 475
V ++ A A N +G+IFA+ ++ ++ PTV +D+ QGTQ+ +Y+ R P
Sbjct: 417 GVSSDGAALAVYAGNGAGVIFADTISRKSSQDSFWPTVHVDLYQGTQILNYIRD-SRKPT 475
Query: 476 VQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535
V++ PSKT +G+ PAP VAYFSSRGPSS+SP ILKPD+TAPG+ +LAAWPP + PT++P
Sbjct: 476 VRISPSKTVVGETPAPAVAYFSSRGPSSVSPKILKPDVTAPGVNILAAWPPKSSPTVIPL 535
Query: 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAG 595
D R +WN SGTSMSCPHVSG+ A+IKS HP WSPAA++SALMTTAY D + D + AG
Sbjct: 536 DKRLTEWNMDSGTSMSCPHVSGIAAVIKSVHPTWSPAAVKSALMTTAYMYDGTSDVMQAG 595
Query: 596 GSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDET 655
G++K +D FD+GAGH++P++A+DPGL+YD D++VFL ++GYT+ I + LP P
Sbjct: 596 GTVKAADAFDVGAGHVDPLRALDPGLVYDAGARDHVVFLCSLGYTEAAIRNMVLPQP--A 653
Query: 656 ERTSCPQ---AHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGV 712
TSCP+ P + +NYP+I + +L T+T+KRTV NVG ++A+Y A+V P G
Sbjct: 654 LDTSCPRGGGGGGGPEADLNYPAIVLPDLGGTVTVKRTVTNVGANRDAVYRAAVASPQGA 713
Query: 713 EVVVWPRVLVFSWFK--EEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVVFVNN 770
VWPR L FS E+ SYY+++ P K+S+GRFDFG++VWSDGFH VR+PLVV V N
Sbjct: 714 RAEVWPRELAFSARPGGEQASYYLTVTPAKLSRGRFDFGEVVWSDGFHRVRTPLVVRVTN 773
Query: 771 THLDSV 776
D V
Sbjct: 774 LPDDGV 779
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564814|ref|XP_002523401.1| conserved hypothetical protein [Ricinus communis] gi|223537351|gb|EEF38980.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/604 (62%), Positives = 463/604 (76%), Gaps = 10/604 (1%)
Query: 1 MASYLHGF-WGLSLSLSLSFVHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFAS 59
MA+Y H F WGLSLS F HS ++ SHVYIVYLG N DP L S SHLQLLS+VF S
Sbjct: 1 MATYFHCFFWGLSLS----FAHSIASTSHVYIVYLGLNPFHDPILTSNSHLQLLSNVFTS 56
Query: 60 EEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLI 119
E +AK+SLLY YK+SFSGFSA LNS+QAA++A M+ VIS+F S+ +KLHTTRSWDF+G+
Sbjct: 57 EGEAKQSLLYSYKHSFSGFSAMLNSTQAANIANMKGVISVFRSKTVKLHTTRSWDFLGIP 116
Query: 120 LDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQ 179
L N P L YGD+++VG+FD+G+WP+S+SF+EE + PIP SWKG CV+GE+F+P+
Sbjct: 117 LYNNEAKIPYPLTYGDNVIVGVFDSGIWPDSKSFKEEECLGPIPPSWKGKCVKGEEFEPR 176
Query: 180 KACNRKLIGARYYVKGFEEEYGPLNAS-TNREYRSARDFLGHGTHTASTAAGSIAKNAGF 238
+ACNRKLIGAR Y+ G E +YG LN S N E+RS RDFLGHGTHTASTA GSI KN F
Sbjct: 177 QACNRKLIGARCYITGIEHDYGVLNKSGGNAEFRSPRDFLGHGTHTASTAVGSIVKNVSF 236
Query: 239 FGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESP 298
G +G ARGGAPRARLAVYK+CWGK DG CTEADILAA+DDAL DGV+VIS S G P
Sbjct: 237 LGYAQGTARGGAPRARLAVYKVCWGK--DGACTEADILAAYDDALKDGVNVISVSIGSRP 294
Query: 299 PLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTE 358
PL FF S+ IGSF+AMQ G+TVVFS GN GP+P+ V+NV+PWSI VAAS+IDR+FP E
Sbjct: 295 PLAQFFYSSNAIGSFHAMQLGITVVFSAGNSGPDPASVENVSPWSISVAASTIDRSFPAE 354
Query: 359 IVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVK 418
IV+NS+ S++G+SF++ E+ L A YF G+C + W A G++V+C
Sbjct: 355 IVLNSNLSVMGQSFLTKEITGILANADMYFDGGLCYPDLWNNISAAGKIVICRGPTSF-- 412
Query: 419 TEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQL 478
++ A++A + A + LIF + T A+VDIIPTVR+D +GT + +Y+ QF L +V++
Sbjct: 413 SDIAQSAVRTAKGTALIFVDTPTNQFADVDIIPTVRVDFTKGTTILNYINQFQLLQVVKI 472
Query: 479 KPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS+T IG+ PAP VA FSSRGPSSISPD LKPD+TAPGI +LAAWP TPP LP D R
Sbjct: 473 LPSRTVIGQSPAPVVAPFSSRGPSSISPDFLKPDLTAPGINILAAWPSKTPPIFLPGDKR 532
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
SVKWNFQSGTSMSCPHVSGVVALIKSAHP+WSPAAIRSAL+TTA T+DT+ DSILAG SM
Sbjct: 533 SVKWNFQSGTSMSCPHVSGVVALIKSAHPHWSPAAIRSALITTASTKDTALDSILAGESM 592
Query: 599 KVSD 602
KV D
Sbjct: 593 KVPD 596
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22773236|gb|AAN06842.1| Putatvie subtilisin-like serine protease [Oryza sativa Japonica Group] gi|108706286|gb|ABF94081.1| PA domain containing protein, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/637 (55%), Positives = 469/637 (73%), Gaps = 10/637 (1%)
Query: 141 IFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEY 200
+++ VWPES+SF+++ + IPSSW+GTCV GEKFDP ACNRKLIGARYY+ GFE E
Sbjct: 1 MYNVCVWPESQSFRDDGHLGDIPSSWRGTCVEGEKFDPATACNRKLIGARYYLAGFESEV 60
Query: 201 GPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFG-LGRGIARGGAPRARLAVYK 259
GPLN S EYRS RD +GHGTHTASTA G+++ +A + G LGRG+ARGGAP +RLAVYK
Sbjct: 61 GPLNTSGGAEYRSPRDRVGHGTHTASTAVGAVSPDASYVGGLGRGVARGGAPWSRLAVYK 120
Query: 260 ICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHG 319
+CW KD G+C++ADILAAFDDAL DGV VISAS G +PPL P F ++ +IG+F+AMQ G
Sbjct: 121 VCWFKDLTGRCSDADILAAFDDALRDGVHVISASLGSTPPLMPLFMTSTEIGAFHAMQLG 180
Query: 320 VTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKA 379
V VFS GNDGP+ ++VQNV+PW I VAAS+IDR FPT I + ++ S+VGESF ++K
Sbjct: 181 VPAVFSAGNDGPDAAMVQNVSPWVITVAASTIDRRFPTVITLGNNVSLVGESFNVNDMKM 240
Query: 380 KLVEAFTYFADGIC---KCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436
+LVE+ + F+DG C + N A+GR+VLCFST + + A A A +GLIF
Sbjct: 241 RLVESGSVFSDGSCSFDQLTNGSRAAASGRIVLCFSTT-TASSGVAALAVYAAGGAGLIF 299
Query: 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYF 496
AE ++ + + +PTV +D+ QGT++ DY+ R P + PS T +GK PAP VAYF
Sbjct: 300 AETISRRSTQDNFLPTVHVDLRQGTRILDYIRGSSRPPTARFSPSTTLVGKSPAPAVAYF 359
Query: 497 SSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVS 556
SSRGPSSISP ILKPD+TAPG+ +LAAWPP + PT++P D RSV WNF SGTSMSCPHVS
Sbjct: 360 SSRGPSSISPHILKPDVTAPGVNILAAWPPMSSPTVIPLDKRSVTWNFDSGTSMSCPHVS 419
Query: 557 GVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKA 616
G+VA++++ HP WSPAAI+SALMTTAY D + D +LAGG++K +D FD+GAGH++P++A
Sbjct: 420 GIVAVVRAVHPTWSPAAIKSALMTTAYMYDDTSDVMLAGGTLKAADAFDVGAGHVDPLRA 479
Query: 617 MDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSF---INY 673
+DPGL+YD D+++FL +GYT+ QI ++ LPSP + TSC +NY
Sbjct: 480 LDPGLVYDAGVRDHVLFLCGLGYTRYQIRQMVLPSP--SLDTSCGGEGGGAAPPEYDLNY 537
Query: 674 PSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYY 733
P+I + L +T+T+KRTV N+G +++A+Y A+VV P G VWP L FS +++ SYY
Sbjct: 538 PAIVLPRLNATVTVKRTVTNMGPRRDAVYRAAVVSPHGARAAVWPPALSFSPYRDTASYY 597
Query: 734 VSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVVFVNN 770
V++ P K+S+GR+DFG+IVWSDG+H VR+PLVV V
Sbjct: 598 VTVAPAKLSRGRYDFGEIVWSDGYHRVRTPLVVRVTT 634
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218192128|gb|EEC74555.1| hypothetical protein OsI_10097 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/633 (55%), Positives = 467/633 (73%), Gaps = 10/633 (1%)
Query: 145 GVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLN 204
GVWPES+SF+++ + IPSSW+GTCV GEKFDP ACNRKLIGARYY+ GFE E GPLN
Sbjct: 44 GVWPESQSFRDDGHLGDIPSSWRGTCVEGEKFDPATACNRKLIGARYYLAGFESEVGPLN 103
Query: 205 ASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFG-LGRGIARGGAPRARLAVYKICWG 263
S EYRS RD +GHGTHTASTA G+++ +A + G LGRG+ARGGAP +RLAVYK+CW
Sbjct: 104 TSGGAEYRSPRDRVGHGTHTASTAVGAVSPDASYVGGLGRGVARGGAPWSRLAVYKVCWF 163
Query: 264 KDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVV 323
KD G+C++ADILAAFDDAL DGV VISAS G +PPL P F ++ +IG+F+AMQ GV V
Sbjct: 164 KDLTGRCSDADILAAFDDALRDGVHVISASLGSTPPLMPLFMTSTEIGAFHAMQLGVPAV 223
Query: 324 FSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVE 383
FS GNDGP+ ++VQNV+PW I VAAS+IDR FPT I + ++ S+VGESF ++K +LVE
Sbjct: 224 FSAGNDGPDAAMVQNVSPWVITVAASTIDRRFPTVITLGNNVSLVGESFNVNDMKMRLVE 283
Query: 384 AFTYFADGIC---KCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440
+ + F+DG C + N A+GR+VLCFST + + A A A +GLIFAE +
Sbjct: 284 SGSVFSDGSCSFDQLTNGSRAAASGRIVLCFSTT-TASSGVAALAVYAAGGAGLIFAETI 342
Query: 441 TELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRG 500
+ + + +PTV +D+ QGT++ DY+ R P + PS T +GK PAP VAYFSSRG
Sbjct: 343 SRRSTQDNFLPTVHVDLRQGTRILDYIRGSSRPPTARFSPSTTLVGKSPAPAVAYFSSRG 402
Query: 501 PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVA 560
PSSISP ILKPD+TAPG+ +LAAWPP + PT++P D RSV WNF SGTSMSCPHVSG+VA
Sbjct: 403 PSSISPHILKPDVTAPGVNILAAWPPMSSPTVIPLDKRSVTWNFDSGTSMSCPHVSGIVA 462
Query: 561 LIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPG 620
++++ HP WSPAAI+SALMTTAY D + D +LAGG++K +D FD+GAGH++P++A+DPG
Sbjct: 463 VVRAVHPTWSPAAIKSALMTTAYMYDDTSDVMLAGGTLKAADAFDVGAGHVDPLRALDPG 522
Query: 621 LIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSF---INYPSIT 677
L+YD D+++FL +GYT+ QI ++ LPSP + TSC +NYP+I
Sbjct: 523 LVYDAGARDHVLFLCGLGYTRYQIRQMVLPSP--SLDTSCGGEGGGAAPPEYDLNYPAIV 580
Query: 678 VSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLK 737
+ L +T+T+KRTV N+G +++A+Y A+VV P G VWP L FS +++ S+YV++
Sbjct: 581 LPRLNATVTVKRTVTNMGPRRDAVYRAAVVSPHGARAAVWPPALAFSPYRDTASFYVTVA 640
Query: 738 PLKMSQGRFDFGQIVWSDGFHYVRSPLVVFVNN 770
P K+S+GR+DFG+IVWSDG+H VR+PLVV V
Sbjct: 641 PAKLSRGRYDFGEIVWSDGYHRVRTPLVVRVTT 673
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| TAIR|locus:2136824 | 746 | UNE17 "AT4G26330" [Arabidopsis | 0.795 | 0.833 | 0.587 | 8.6e-207 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.929 | 0.945 | 0.417 | 4.5e-153 | |
| TAIR|locus:2037895 | 774 | SBT3.5 "AT1G32940" [Arabidopsi | 0.923 | 0.932 | 0.409 | 3.5e-139 | |
| TAIR|locus:2037915 | 773 | AT1G32950 "AT1G32950" [Arabido | 0.927 | 0.937 | 0.401 | 6.9e-134 | |
| UNIPROTKB|Q7XT43 | 756 | OSJNBb0089K24.4 "OSJNBb0089K24 | 0.895 | 0.925 | 0.386 | 4.4e-132 | |
| TAIR|locus:2037935 | 777 | SBT3.3 "AT1G32960" [Arabidopsi | 0.914 | 0.920 | 0.391 | 1.3e-130 | |
| TAIR|locus:2119028 | 766 | AT4G21650 "AT4G21650" [Arabido | 0.451 | 0.460 | 0.412 | 6.9e-130 | |
| TAIR|locus:2127666 | 775 | AT4G10540 "AT4G10540" [Arabido | 0.929 | 0.938 | 0.388 | 1.2e-129 | |
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.905 | 0.910 | 0.388 | 1.2e-129 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.892 | 0.873 | 0.390 | 1.5e-129 |
| TAIR|locus:2136824 UNE17 "AT4G26330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2000 (709.1 bits), Expect = 8.6e-207, P = 8.6e-207
Identities = 371/631 (58%), Positives = 468/631 (74%)
Query: 145 GVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLN 204
G+WPESESF+E P PIPSSW G CV GE FDP CNRKLIGAR+Y++GFEE YG ++
Sbjct: 113 GIWPESESFRETPEAKPIPSSWNGKCVGGEDFDPSVHCNRKLIGARFYLRGFEETYGTID 172
Query: 205 ASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXX-XXXXXVYKICWG 263
+ + EYRS RD+LGHGTHTASTA GS+ +N V+K CWG
Sbjct: 173 FTRDPEYRSPRDYLGHGTHTASTAVGSVVRNVSGFFGLGRGTARGGAPLARLAVFKTCWG 232
Query: 264 KDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVV 323
KD +G CTEADILAAFDDA+HDGV VISASFG SPPL PFF S+ADIG+F+A + G++VV
Sbjct: 233 KDLEGVCTEADILAAFDDAIHDGVHVISASFGYSPPLSPFFESSADIGAFHAAERGISVV 292
Query: 324 FSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVE 383
FS GNDGP+P +VQNVAPW++ VAAS++DR+FPT IV++ F++ G+S IS E+ L
Sbjct: 293 FSTGNDGPDPGVVQNVAPWAVSVAASTVDRSFPTRIVIDGSFTLTGQSLISQEITGTLAL 352
Query: 384 AFTYFADGICKCENWMGRKATGRVVLCFSTMGSVXXXXXXXXXXXXXXS-GLIFA-EPMT 441
A TYF G+CK ENWM + A ++LCFST+G V + LIFA P
Sbjct: 353 ATTYFNGGVCKWENWMKKLANETIILCFSTLGPVQFIEEAQAAAIRANALALIFAASPTR 412
Query: 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGP 501
+L EVD+IPTVR+DI GT++R+YLA+ P +P+V++ PSKT IG+ AP+VAYFSSRGP
Sbjct: 413 QLAEEVDMIPTVRVDILHGTRIRNYLARSPTVPMVKIGPSKTVIGETTAPSVAYFSSRGP 472
Query: 502 SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVAL 561
SS+SPDILKPDITAPGIG+LAAWPP TPPTLLP D RS++WNFQSGTSMSCPHV+GV+AL
Sbjct: 473 SSLSPDILKPDITAPGIGILAAWPPRTPPTLLPGDHRSIEWNFQSGTSMSCPHVAGVMAL 532
Query: 562 IKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGL 621
++SAHP+WSP+AIRSA+MTTAYTRDTS+D IL+GGSMK +DPFDIGAGHINP+KAMDPGL
Sbjct: 533 LQSAHPDWSPSAIRSAIMTTAYTRDTSYDLILSGGSMKSTDPFDIGAGHINPLKAMDPGL 592
Query: 622 IYDLKPTDYIVFLRNIGYTQDQINKIFL-PSPDETERTSCPQAHKI-PNSFINYPSITVS 679
+Y+ + DY++F+ NIGYT +I + L P P T+C +H N+ NYPSIT+
Sbjct: 593 VYNTRTDDYVLFMCNIGYTDQEIKSMVLHPEPS----TTCLPSHSYRTNADFNYPSITIP 648
Query: 680 NLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVFSWFKEEVSYYVSLKPL 739
+L+ T TIKRTV NVG KN +YF WPR+LVFS ++E SYYV+ KP
Sbjct: 649 SLRLTRTIKRTVSNVGPNKNTVYFVDIIRPVGVEVLIWPRILVFSKCQQEHSYYVTFKPT 708
Query: 740 KMSQGRFDFGQIVWSDGFHYVRSPLVVFVNN 770
++ GR+ FG+I+W++G H VRSP+VVF++N
Sbjct: 709 EIFSGRYVFGEIMWTNGLHRVRSPVVVFLSN 739
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1493 (530.6 bits), Expect = 4.5e-153, P = 4.5e-153
Identities = 316/756 (41%), Positives = 442/756 (58%)
Query: 23 TSTASHVYIVYLGHNRH-CDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAK 81
+S+ S+VYIVY+G H P L+ ++H +L++V SE+ A ++LY Y++ FSGF+A
Sbjct: 20 SSSRSNVYIVYMGERHHGLRPELVQEAHHGMLAAVLGSEQAAMDAILYSYRHGFSGFAAV 79
Query: 82 LNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGI 141
L QAA L++ V+ + ++VL LHTTRSWDFMG+ +G ++ +G+D ++G+
Sbjct: 80 LTGGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGVNPSPSGGGILLESRFGEDSIIGV 139
Query: 142 FDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201
DTG+WPES SF+++ + +P WKG CV GEKF+ CNRK+IGA++YVKG+E EYG
Sbjct: 140 LDTGIWPESASFRDD-GIGEVPRRWKGQCVAGEKFNASN-CNRKIIGAKWYVKGYEAEYG 197
Query: 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKIC 261
+N S E+ SARD +GHGTHTASTAAG++ N VYK+C
Sbjct: 198 KMNTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKVC 257
Query: 262 WGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVT 321
W + G CT ADILAAFDDA+HDGVDVIS S G++PPL + IGSF+A+ GV
Sbjct: 258 W---ATGDCTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVLSIGSFHAVAKGVV 314
Query: 322 VVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAK- 380
VV S GN GP V N APW + VAA +IDR F +I++ ++ + VG++ S + +K
Sbjct: 315 VVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKHPSKS 374
Query: 381 --LVEAFTYFADGI-------CKCENWMGRKATGRVVLCFSTMGSVXXXXXXXXXXXXXX 431
+V A +D C + G VVLCF T
Sbjct: 375 VRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVKKARG 434
Query: 432 SGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAP 491
G+IFA+ +T+ IA IP V++D GT + Y R P+ Q KT +G++ AP
Sbjct: 435 VGVIFAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSM-RNPVAQFSFPKTIVGELVAP 493
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
VAYFSSRGPSS+SP ILKPDI APG+ +LAAW +P + S SV + SGTSMS
Sbjct: 494 EVAYFSSRGPSSLSPSILKPDIAAPGVNILAAW---SPAAAISSAIGSVNFKIDSGTSMS 550
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDT-SHDSILAGGSMKVSDPFDIGAGH 610
CPH+SGVVAL+KS HPNWSPAA++SAL+TTA D + + ++PFD G GH
Sbjct: 551 CPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGGGH 610
Query: 611 INPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSF 670
+NP +A PGL+YD+ +DY+ FL ++GY I+ + ++T+C K +
Sbjct: 611 VNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSM------TQQQTTCQHTPKSQLN- 663
Query: 671 INYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVFSWFKEEV 730
+N PSIT+ L+ +T+ RTV NVG + Y A P +L F+ ++
Sbjct: 664 LNVPSITIPELRGKLTVSRTVTNVGPALSK-YRARVEAPPGVDVTVSPSLLTFNSTVRKL 722
Query: 731 SYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVV 766
+ V+ + +GR+ FG + W DG H VR PLVV
Sbjct: 723 PFKVTFQAKLKVKGRYTFGSLTWEDGTHTVRIPLVV 758
|
|
| TAIR|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 311/760 (40%), Positives = 429/760 (56%)
Query: 24 STASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLN 83
S S V+IVYLG +H DP +S+SH Q+LSS+ S+ DA S++Y Y++ FSGF+AKL
Sbjct: 24 SDESKVHIVYLGEKQHDDPEFVSESHHQMLSSLLGSKVDAHESMVYSYRHGFSGFAAKLT 83
Query: 84 SSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFD 143
SQA LA+ EV+ + +L TTR+WD++GL + N + GD +++G D
Sbjct: 84 ESQAKKLADSPEVVHVMADSFYELATTRTWDYLGLSVANPNNLLN-DTNMGDQVIIGFID 142
Query: 144 TGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPL 203
TGVWPESESF + + PIPS WKG C GEKF CNRKLIGA+Y++ GF E
Sbjct: 143 TGVWPESESFNDN-GVGPIPSHWKGGCESGEKFISTN-CNRKLIGAKYFINGFLAENEGF 200
Query: 204 NASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICWG 263
N + +R+Y SARDF+GHGTHTAS A GS N +YK CW
Sbjct: 201 NTTESRDYISARDFIGHGTHTASIAGGSFVPNISYKGLAGGNLRGGAPRARIAIYKACWY 260
Query: 264 KDSDGK--CTEADILAAFDDALHDGVDVISASFGESPPLRPF--FASNADIGSFNAMQHG 319
D G C+ +DIL A D+++HDGVDV+S S G PL P G+F+A+ G
Sbjct: 261 VDQLGAVACSSSDILKAMDESMHDGVDVLSLSLGAQIPLYPETDLRDRIATGAFHAVAKG 320
Query: 320 VTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES-FISTEVK 378
+ VV +GGN GP V N APW I VAA+++DR+FPT I + + I+G++ + E+
Sbjct: 321 IIVVCAGGNSGPAAQTVLNTAPWIITVAATTLDRSFPTPITLGNRKVILGQALYTGQELG 380
Query: 379 -AKLV----EAFTYFA-DGICKCENWM-GRKATGRVVLCFSTMGSVXXXXXXXXXXXXXX 431
LV FT G+C+ N R G+VVLCF+T ++
Sbjct: 381 FTSLVYPENAGFTNETFSGVCERLNLNPNRTMAGKVVLCFTT-NTLFTAVSRAASYVKAA 439
Query: 432 SGL---IFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKV 488
GL I P L D P V ID GT + Y+ R P+V+++PS+T +G+
Sbjct: 440 GGLGVIIARNPGYNLTPCRDDFPCVAIDYELGTDVLLYIRS-TRSPVVKIQPSRTLVGQP 498
Query: 489 PAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
VA FSSRGP+SISP ILKPDI APG+ +LAA P++ ++ G ++ +GT
Sbjct: 499 VGTKVATFSSRGPNSISPAILKPDIGAPGVSILAATSPDSNSSV---GG----FDILAGT 551
Query: 549 SMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILA-GGSMKVSDPFDIG 607
SM+ P V+GVVAL+K+ HPNWSPAA RSA++TTA+ D + I A G S KV+DPFD G
Sbjct: 552 SMAAPVVAGVVALLKALHPNWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKVADPFDYG 611
Query: 608 AGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIP 667
G +NP KA DPGLIYD+ P DYI++L + GY I ++ S P+ +
Sbjct: 612 GGIVNPEKAADPGLIYDMGPRDYILYLCSAGYNDSSITQLV----GNVTVCSTPKTSVLD 667
Query: 668 NSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVFSWFK 727
+N PSIT+ +L+ +T+ RTV NVG +++Y P LVF+
Sbjct: 668 ---VNLPSITIPDLKDEVTLTRTVTNVGTV-DSVYKVVVEPPLGIQVVVAPETLVFNSKT 723
Query: 728 EEVSYYVSLKPL-KMSQGRFDFGQIVWSDGFHYVRSPLVV 766
+ VS+ V + K++ G F FG ++W+D H V P+ V
Sbjct: 724 KNVSFTVRVSTTHKINTG-FYFGNLIWTDSMHNVTIPVSV 762
|
|
| TAIR|locus:2037915 AT1G32950 "AT1G32950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
Identities = 307/764 (40%), Positives = 429/764 (56%)
Query: 20 VHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFS 79
V S S V+IVYLG +H DP +++SH Q+LSS+ S++DA S++Y Y++ FSGF+
Sbjct: 20 VARASAKSKVHIVYLGEKQHDDPKFVTESHHQMLSSLLGSKDDAHESMVYSYRHGFSGFA 79
Query: 80 AKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVV 139
AKL SQA +A+ EVI + +L TTR WD++G DN+ + GD ++
Sbjct: 80 AKLTKSQAKKIADSPEVIHVIPDSYYELATTRIWDYLGPSADNSKNLVS-DTNMGDQTII 138
Query: 140 GIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE 199
G+ DTGVWPESESF + + P+PS WKG C GE F CNRKLIGA+Y++ GF E
Sbjct: 139 GVIDTGVWPESESFNDY-GVGPVPSHWKGGCEPGENFISTN-CNRKLIGAKYFINGFLAE 196
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYK 259
NA+ + +Y SARDF GHGTH AS A GS N +YK
Sbjct: 197 -NQFNATESPDYISARDFDGHGTHVASIAGGSFVPNVSYKGLGRGTLRGGAPRARIAMYK 255
Query: 260 ICWG-KDSDG-KCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADI--GSFNA 315
CW + DG C+ +DI+ A D+A+HDGVDV+S S G PL I G+F+A
Sbjct: 256 ACWYINELDGVTCSFSDIMKAIDEAIHDGVDVLSISLGGRVPLNSETDLRDGIATGAFHA 315
Query: 316 MQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES-FIS 374
+ G+ VV +GGN GP V N APW + VAA+++DR+F T I++ ++ I+G++ +I
Sbjct: 316 VAKGIVVVCAGGNAGPSSQTVVNTAPWILTVAATTLDRSFATPIILGNNQVILGQAMYIG 375
Query: 375 TEVK-AKLV------EAFTYFADGICKCENW-MGRKATGRVVLCFSTMGSVXXXXXXXXX 426
E+ LV + F+ G+C+ N R G+VVLCF+T
Sbjct: 376 PELGFTSLVYPEDPGNSIDTFS-GVCESLNLNSNRTMAGKVVLCFTTARDFTVVSTAASI 434
Query: 427 XXXXXS-GLIFAE-PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTS 484
GLI A P L D P V ID GT + Y+ ++ P+V+++PS+T
Sbjct: 435 VKAAGGLGLIIARNPGYNLAPCSDDFPCVAIDNELGTDILFYI-RYTGSPVVKIQPSRTL 493
Query: 485 IGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNF 544
+G+ VA FSSRGP+SISP ILKPDI APG+ +LAA PN TL + G V
Sbjct: 494 VGEPVGTKVATFSSRGPNSISPAILKPDIAAPGVSILAATSPND--TL--NAGGFV---M 546
Query: 545 QSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILA-GGSMKVSDP 603
+SGTSM+ P +SGV+AL+KS HP+WSPAA RSA++TTA+ D + I A S+KV DP
Sbjct: 547 RSGTSMAAPVISGVIALLKSLHPDWSPAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDP 606
Query: 604 FDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQA 663
FD G G +NP KA +PGLI D+ DY+++L + GY I+++ + S P+
Sbjct: 607 FDYGGGLVNPEKAAEPGLILDMDSQDYVLYLCSAGYNDSSISRLV----GKVTVCSNPKP 662
Query: 664 HKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVF 723
+ IN PSIT+ NL+ +T+ RTV NVG +++Y P LVF
Sbjct: 663 SVLD---INLPSITIPNLKDEVTLTRTVTNVGPV-DSVYKVLVEPPLGIQVVVTPETLVF 718
Query: 724 SWFKEEVSYYVSLKPL-KMSQGRFDFGQIVWSDGFHYVRSPLVV 766
+ + VS+ V + K++ G F FG + W+D H V P+ V
Sbjct: 719 NSKTKSVSFTVIVSTTHKINTG-FYFGSLTWTDSIHNVVIPVSV 761
|
|
| UNIPROTKB|Q7XT43 OSJNBb0089K24.4 "OSJNBb0089K24.4 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 292/756 (38%), Positives = 419/756 (55%)
Query: 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQ 86
S +YIVYLG +H D +L++ SH +L+S+ S+E+ RS++Y Y++ FSGFSA L SQ
Sbjct: 33 SRLYIVYLGERQHEDADLVTASHHDMLTSILGSKEETLRSIVYSYRHGFSGFSAMLTQSQ 92
Query: 87 AASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGV 146
A +A + V+S+ E+Q+ K HTTRSWDF+GL T + + YG+ +++G+ DTG+
Sbjct: 93 ARKIAGLPGVLSVTENQIYKTHTTRSWDFLGLDYKPTNGLL-AKARYGEGVIIGVVDTGI 151
Query: 147 WPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206
PES SF + +P PS WKG C G F +CNRK+IGAR+Y Y N +
Sbjct: 152 TPESPSFDDAGYGTP-PSKWKGICQVGPSFGTN-SCNRKIIGARWYA------YDVPNGT 203
Query: 207 TNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICWGKDS 266
+ E S RD GHGTHTASTA G+I N +YK CW
Sbjct: 204 LDTEVLSPRDVHGHGTHTASTAGGNIVHNVSRLGLAAGTAHGGAPRARLAIYKACWATPD 263
Query: 267 DGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSG 326
C+ A +L A DDA+HDGVD++S S G PF +G+ + + +G+ VV+S
Sbjct: 264 GTGCSGAGLLKAMDDAIHDGVDILSLSIGG-----PF----EHMGTLHVVANGIAVVYSA 314
Query: 327 GNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFT 386
GNDGP V+N +PW + VAA+++DR+FP I + ++ V +SF+ T ++ E
Sbjct: 315 GNDGPIAQTVENSSPWLLTVAAATMDRSFPVVITLGNNEKFVAQSFVVTGSASQFSEIQM 374
Query: 387 YFADGICKCENWMGRKATGRVVLCFSTMGSVXXXXXXXXXXXXXXS-----GLIFAEPMT 441
Y D C +N + G +V CF T + + G+IF + T
Sbjct: 375 YDNDN-CNADN-IDNTVKGMIVFCFITKFDMENYDRIINTVASKVASKGGRGVIFPKYST 432
Query: 442 ELIAEVDII----PTVRIDIAQGTQLRDYLA--QFPRLPIVQLKPSKTSIGKV-PAPTVA 494
+L D+I P V +D ++R Y+ + +P ++ +KT +G AP +A
Sbjct: 433 DLFLREDLITFDIPFVLVDYEISYRIRQYIINNENGNIPKAKISLTKTMVGSENSAPKIA 492
Query: 495 YFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPH 554
FSSRGPS I P +LKPDI APG+ +LAA PNTP + + V + F SGTSM+CPH
Sbjct: 493 AFSSRGPSYIYPGVLKPDIAAPGVAILAA-SPNTP------EFKGVPYRFDSGTSMACPH 545
Query: 555 VSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM-KVSDPFDIGAGHINP 613
VSG++A++KS HP WSPAA++SA+MTTA T D + + A G + K++DPFD GAG +NP
Sbjct: 546 VSGIIAVLKSLHPEWSPAALKSAIMTTANTFDNNGMPMQANGRVPKIADPFDYGAGFVNP 605
Query: 614 MKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSFINY 673
+ A DPGLIYD+ P DY+ F +G L S D T + I +N
Sbjct: 606 IMAADPGLIYDINPLDYLKFFNCMGG---------LGSQDNCTTT---KGSVID---LNL 650
Query: 674 PSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVFSWFKEEVSYY 733
PSI + NL+++ T RTV NVG ++ +Y A P LVFS K++ S+
Sbjct: 651 PSIAIPNLRTSETAVRTVTNVGVQQEVVYKAFLDPPAGIEMAVEPSELVFSKDKKDQSFK 710
Query: 734 VSLKPLKMSQGRFDFGQIVWSDG-FHYVRSPLVVFV 768
V+ K + QG + FG + W DG H+VR P+ V +
Sbjct: 711 VTFKATRKVQGDYTFGSLAWHDGGSHWVRIPIAVHI 746
|
|
| TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 301/769 (39%), Positives = 433/769 (56%)
Query: 23 TSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKL 82
+ T S V+IVYLG +H DP +++SH Q+L+S+ S++DA S++Y Y++ FSGF+AKL
Sbjct: 26 SETESKVHIVYLGEKKHHDPEFVTESHHQMLASLLGSKKDADDSMVYSYRHGFSGFAAKL 85
Query: 83 NSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIF 142
SQA +A++ EV+ + +L TTR+W+++GL N + GD +++G+
Sbjct: 86 TKSQAKKIADLPEVVHVIPDGFHELATTRTWEYLGLSSANPKNLLN-DTNMGDQVIIGVI 144
Query: 143 DTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202
DTGVWPESESF + + PIP WKG C GE F CNRKLIGA+Y++ GF E
Sbjct: 145 DTGVWPESESFNDN-GVGPIPRKWKGGCESGENFRSTD-CNRKLIGAKYFINGFLAENKG 202
Query: 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICW 262
N + +R+Y SARDF GHGTH AS A GS N +YK CW
Sbjct: 203 FNTTESRDYISARDFDGHGTHVASIAGGSFVPNVSYKGLAGGTLRGGAPRARIAMYKACW 262
Query: 263 -GKDSDG-KCTEADILAAFDDALHDGVDVISASF-GESP-----PLRPFFASNADIGSFN 314
++ G C+++DI+ A D+A+HDGVDV+S S G+ P +R FA+ G F+
Sbjct: 263 FHEELKGVTCSDSDIMKAIDEAIHDGVDVLSISLVGQIPLNSETDIRDEFAT----GLFH 318
Query: 315 AMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES-FI 373
A+ G+ VV +GGNDGP V N+APW + VAA+++DR+FPT I + ++ I+G++ +
Sbjct: 319 AVAKGIVVVCAGGNDGPAAQTVVNIAPWILTVAATTLDRSFPTPITLGNNKVILGQATYT 378
Query: 374 STEVK-AKLV---------EAFTYFADGICKCENWMGRKATG-RVVLCFS-TMGSVXXXX 421
E+ LV E F+ G+C+ N +VVLCF+ + +
Sbjct: 379 GPELGLTSLVYPENARNNNETFS----GVCESLNLNPNYTMAMKVVLCFTASRTNAAISR 434
Query: 422 XXXXXXXXXXSGLIFAE-PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKP 480
GLI + P+ L D P V +D GT + Y+ R P+V+++
Sbjct: 435 AASFVKAAGGLGLIISRNPVYTLSPCNDDFPCVAVDYELGTDILSYIRS-TRSPVVKIQR 493
Query: 481 SKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSV 540
S+T G+ V FSSRGP+S+SP ILKPDI APG+ +LAA PN L G ++
Sbjct: 494 SRTLSGQPVGTKVVNFSSRGPNSMSPAILKPDIAAPGVRILAATSPNDT---LNVGGFAM 550
Query: 541 KWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILA-GGSMK 599
SGTSM+ P +SGV+AL+K+ HP WSPAA RSA++TTA+ D + I A G S K
Sbjct: 551 L----SGTSMATPVISGVIALLKALHPEWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRK 606
Query: 600 VSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTS 659
VSDPFD G G +NP KA +PGLIYD+ P DYI++L + GY I+++ + T
Sbjct: 607 VSDPFDYGGGIVNPEKAAEPGLIYDMGPQDYILYLCSAGYNDSSISQLV------GQITV 660
Query: 660 CPQAHKIPNSF-INYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWP 718
C ++ P+ +N PSIT+ NL+ +T+ RTV NVG +++Y S P
Sbjct: 661 C--SNPKPSVLDVNLPSITIPNLKDEVTLTRTVTNVGLV-DSVYKVSVEPPLGVRVVVTP 717
Query: 719 RVLVFSWFKEEVSYYVSLKPL-KMSQGRFDFGQIVWSDGFHYVRSPLVV 766
LVF+ VS+ V + K++ G + FG + W+D H V PL V
Sbjct: 718 ETLVFNSKTISVSFTVRVSTTHKINTGYY-FGSLTWTDSVHNVVIPLSV 765
|
|
| TAIR|locus:2119028 AT4G21650 "AT4G21650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
Identities = 153/371 (41%), Positives = 220/371 (59%)
Query: 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQ 86
S VYIVYLG H DP L++ SH Q+L S+ S+EDA+ SL+Y Y++ FSGF+A L SSQ
Sbjct: 39 SKVYIVYLGEREHDDPELVTASHHQMLESLLQSKEDAQNSLIYSYQHGFSGFAALLTSSQ 98
Query: 87 AASLAEMEEVISIFESQVLKLHTTRSWDFMGL--ILDNTGEVTPVQ-LAY----GDDIVV 139
A ++E EVI + +++ KL TTR+WD +GL I + ++ V+ L + G + ++
Sbjct: 99 AKKISEHPEVIHVIPNRIRKLKTTRAWDHLGLSPIPTSFSSLSSVKGLLHDTNLGSEAII 158
Query: 140 GIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE 199
G+ D+G+WPES++ ++ + PIP W+G C GE+F+ CN KLIGARYY+ G
Sbjct: 159 GVIDSGIWPESKAVNDQ-GLGPIPKRWRGKCEPGEQFNATIHCNNKLIGARYYLNGVVAA 217
Query: 200 YG-PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVY 258
G N + ++++S RD GHGTHTA+ A GS N Y
Sbjct: 218 IGGKFNRTIIQDFQSTRDANGHGTHTATIAGGSFVPNVSYFGLAQGLVRGGAPRARIASY 277
Query: 259 KICW------GKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNAD-IG 311
K CW G +DG+CT AD+ AFDDA+HDGVDV+S S G P D I
Sbjct: 278 KACWNVMRDEGGGTDGRCTSADMWKAFDDAIHDGVDVLSVSIGGGIP-EDSEVDKLDYIA 336
Query: 312 SFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES 371
+F+A+ G+TVV + GN+GP V NVAPW + VAA+++DR+FPT+I + ++ ++ ES
Sbjct: 337 AFHAVAKGITVVAAAGNEGPGAHTVDNVAPWLLTVAATTLDRSFPTKITLGNNQTLFAES 396
Query: 372 -FISTEVKAKL 381
F E+ L
Sbjct: 397 LFTGPEISTGL 407
|
|
| TAIR|locus:2127666 AT4G10540 "AT4G10540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 297/765 (38%), Positives = 428/765 (55%)
Query: 19 FVHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGF 78
FV S V+IVYLG +H DP +++SH ++L S+ S+EDA S+++ Y++ FSGF
Sbjct: 20 FVAHAGAESKVHIVYLGEKQHDDPEFVTESHHRMLWSLLGSKEDAHSSMVHSYRHGFSGF 79
Query: 79 SAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIV 138
+AKL SQA LA++ EV+ + +L TTR+WD++GL + N + G++++
Sbjct: 80 AAKLTKSQAKKLADLPEVVHVTPDSFYQLDTTRTWDYLGLSVANPKNLLN-DTNMGEEVI 138
Query: 139 VGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEE 198
+GI D+GVWPESE F + + P+PS WKG CV GE F + CN+KLIGA+Y++ GF
Sbjct: 139 IGIVDSGVWPESEVFNDN-GIGPVPSHWKGGCVSGENFTSSQ-CNKKLIGAKYFINGFLA 196
Query: 199 EYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVY 258
+ N++ + ++ S RD GHGTH A+ A GS + +Y
Sbjct: 197 THESFNSTESLDFISPRDRSGHGTHVATIAGGSYVPSISYKGLAGGTVRGGAPRARIAMY 256
Query: 259 KICWGKDS-D-GKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADI--GSFN 314
K CW D D C+ ADIL A D+A+HDGVDV+S S G P P A I G+F+
Sbjct: 257 KACWYLDRFDINTCSSADILKAMDEAMHDGVDVLSLSIGYRFPYFPETDVRAVIATGAFH 316
Query: 315 AMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES-FI 373
A+ G+TVV SGGN GP V N APW + VAA+++DR+FPT I + ++ I+G++ +
Sbjct: 317 AVLKGITVVCSGGNSGPAAQTVGNTAPWILTVAATTLDRSFPTPITLGNNKLILGQAMYT 376
Query: 374 STEVK-AKLV------EAFTYFADGICKCENWMGRKA-TGRVVLCFSTMGS-VXXXXXXX 424
E+ LV + F+ G C+ + G+VVLCF+T +
Sbjct: 377 GPELGFTSLVYPENPGNSNESFS-GDCELLFFNSNHTMAGKVVLCFTTSTRYITVSSAVS 435
Query: 425 XXXXXXXSGLIFAE-PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKT 483
G+I A P L D P V +D GT + Y+ LP+V+++PSKT
Sbjct: 436 YVKEAGGLGVIVARNPGDNLSPCEDDFPCVAVDYELGTDILLYIRS-TGLPVVKIQPSKT 494
Query: 484 SIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWN 543
+G+ VA FSSRGP+SI P ILKPDI APG+ +LAA N T +D +
Sbjct: 495 LVGQPVGTKVADFSSRGPNSIEPAILKPDIAAPGVSILAATTTNK--TF--NDRGFI--- 547
Query: 544 FQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGS-MKVSD 602
F SGTSM+ P +SGVVAL+K+ H +WSPAAIRSA++TTA+ D + I A GS K++D
Sbjct: 548 FLSGTSMAAPTISGVVALLKALHRDWSPAAIRSAIVTTAWRTDPFGEQIFAEGSPRKLAD 607
Query: 603 PFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQ 662
PFD G G +NP KA PGL+YDL DY++++ ++GY + I+++ + T C
Sbjct: 608 PFDYGGGLVNPEKAAKPGLVYDLGLEDYVLYMCSVGYNETSISQLV------GKGTVCSN 661
Query: 663 AHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLV 722
F N PSIT+ NL+ +T+ RT+ NVGQ ++ +Y P L+
Sbjct: 662 PKPSVLDF-NLPSITIPNLKDEVTLTRTLTNVGQLES-VYKVVIEPPIGIQVTVTPETLL 719
Query: 723 FSWFKEEVSYYVSLKPL-KMSQGRFDFGQIVWSDGFHYVRSPLVV 766
F+ + VS+ V + K++ G F FG + WSD H V PL V
Sbjct: 720 FNSTTKRVSFKVKVSTTHKINTGYF-FGSLTWSDSLHNVTIPLSV 763
|
|
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 296/762 (38%), Positives = 419/762 (54%)
Query: 30 YIVYLGHNRHCDPNL-------ISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKL 82
YIVYLG + H P + ++ SH L+S S E+AK ++ Y YK +GF+A L
Sbjct: 42 YIVYLGSHAHL-PQISSAHLDGVAHSHRTFLASFVGSHENAKEAIFYSYKRHINGFAAIL 100
Query: 83 NSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQL----AYGDDIV 138
+ ++AA +A+ +V+S+F ++ KLHTT SW+FM +L G V L YG+D +
Sbjct: 101 DENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFM--LLAKNGVVHKSSLWNKAGYGEDTI 158
Query: 139 VGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEE 198
+ DTGVWPES+SF +E +P+ WKG C K P CNRKLIGARY+ KG+
Sbjct: 159 IANLDTGVWPESKSFSDE-GYGAVPARWKGRC---HKDVP---CNRKLIGARYFNKGYLA 211
Query: 199 EYG-PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXV 257
G P NAS Y + RD GHG+HT STAAG+
Sbjct: 212 YTGLPSNAS----YETCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPKARVAA 267
Query: 258 YKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQ 317
YK+CW +C +ADILAA + A+ DGVDV+SAS G + + IGSF+A++
Sbjct: 268 YKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDAG--DYMSDGIAIGSFHAVK 325
Query: 318 HGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESF---IS 374
+GVTVV S GN GP+ V NVAPW I V ASS+DR F + + + S G S +
Sbjct: 326 NGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTSLSKPLP 385
Query: 375 TEVKAKLVEAF-TYFADG------ICKCENWMGRKATGRVVLCFSTMGSVXXXXXXXXXX 427
E L+ A A+G +CK + +K G++++C G
Sbjct: 386 EEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLR--GDNARVDKGMQAA 443
Query: 428 XXXXSGLIFAEPMT---ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTS 484
+G++ E+I++ ++P +ID G L YL+ + P +K +
Sbjct: 444 AAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSS-TKDPKGYIKAPTAT 502
Query: 485 IGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNF 544
+ PAP +A FSSRGP++I+P ILKPDITAPG+ ++AA+ T PT L SD R +N
Sbjct: 503 LNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRTPFNT 562
Query: 545 QSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPF 604
+SGTSMSCPH+SGVV L+K+ HP+WSPAAIRSA+MTT+ TR+ ++ S K ++PF
Sbjct: 563 ESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMV-DESFKKANPF 621
Query: 605 DIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAH 664
G+GH+ P KA PGL+YDL DY+ FL +GY + ++F P T C Q
Sbjct: 622 SYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVV-QLFAEDPQYT----CRQGA 676
Query: 665 KIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVFS 724
+ + NYPSITV NL ++T+ R +KNVG A Y A P+ L F+
Sbjct: 677 NLLD--FNYPSITVPNLTGSITVTRKLKNVGPP--ATYNARFREPLGVRVSVEPKQLTFN 732
Query: 725 WFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRSPLVV 766
E + ++L+PL ++ + FG++ W+D HYVRSP+VV
Sbjct: 733 KTGEVKIFQMTLRPLPVTPSGYVFGELTWTDSHHYVRSPIVV 774
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
Identities = 289/740 (39%), Positives = 411/740 (55%)
Query: 48 SHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKL 107
SH +LL+ V +E A+ ++ Y Y +GF+A L+++ AA +AE V+S+F ++ KL
Sbjct: 73 SHCELLAGVLGDKEKAREAIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKL 132
Query: 108 HTTRSWDFMGLILDN---TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPS 164
HTTRSW F+GL TG + +G+D ++G DTGVWPESESF+++ + PIPS
Sbjct: 133 HTTRSWQFLGLAGVGGAPTGAAWK-KARFGEDTIIGNLDTGVWPESESFRDD-GLGPIPS 190
Query: 165 SWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHT 224
W+G C +G+ D +CNRKLIGAR++ KG+ G LN S + + RD GHGTHT
Sbjct: 191 WWRGECQKGQ--DDAFSCNRKLIGARFFNKGYASAVGNLNTSL---FDTPRDTDGHGTHT 245
Query: 225 ASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICWGKDSDGKCTEADILAAFDDALH 284
STA G+ Y++C+ + +C +ADILAAFD A+H
Sbjct: 246 LSTAGGAPVAGASVFGYGNGTASGGSPMARVAAYRVCYTPVNGSECFDADILAAFDAAIH 305
Query: 285 DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSI 344
DGV V+S S G +FA IGSF+A++HG+ VV S GN GP P V NVAPW
Sbjct: 306 DGVHVLSVSLGGDAG--DYFADGLAIGSFHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLF 363
Query: 345 CVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCEN------- 397
AAS++DR FP +V N D + G+S +S + +F + N
Sbjct: 364 TAAASTMDREFPAYVVFN-DTKLKGQS-LSASALSPASSSFPMIDSSLAASPNRTQNESQ 421
Query: 398 --WMG----RKATGRVVLCFSTMGSVXXXXXXXXXXXXXXSGLIFAEPMT---ELIAEVD 448
++G K G++V+C G +G++ A +T E+IA+
Sbjct: 422 LCFLGSLDPEKVKGKIVVCLR--GVNPRVEKGEAVLEAGGAGMVLANDVTTGNEIIADAH 479
Query: 449 IIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDI 508
++P I + G L YL + P + +T +G PAP +A FSS+GP++++P I
Sbjct: 480 VLPATHIKFSDGQILFSYLKN-TKSPAGTITRPETRLGTKPAPFMAAFSSQGPNTVTPGI 538
Query: 509 LKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN 568
LKPDITAPG+ V+AAW + PT L D R V +N +SGTSMSCPHV+GVV L+++ P+
Sbjct: 539 LKPDITAPGVSVVAAWTRASAPTDLAFDKRRVAFNSESGTSMSCPHVAGVVGLLRTLRPD 598
Query: 569 WSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPT 628
WSPAAIRSALMTTA D +IL S ++PF GAGH++P +AM+PGL+YDL
Sbjct: 599 WSPAAIRSALMTTAVEVDNERHAIL-NSSFAAANPFGFGAGHVSPARAMNPGLVYDLAAV 657
Query: 629 DYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAH-KIPNSFINYPSITVSNLQSTMTI 687
DY+ FL ++ Y + +F CP + K+ + +NYPSITV NL S+ T+
Sbjct: 658 DYLNFLCSLSYNAT-VMAMFAGGGGAAP-FRCPASPPKVQD--LNYPSITVVNLTSSATV 713
Query: 688 KRTVKNVGQKKNAIYFASXXXXXXXXXXXWPRVLVFSWFKEEVSYYVSLKPLKMSQGR-F 746
+RTVKNVG K +Y A P L F E+ ++ V + S +
Sbjct: 714 RRTVKNVG--KPGVYKAYVTSPAGVRVTVSPDTLPFLLKGEKKTFQVRFEVTNASLAMDY 771
Query: 747 DFGQIVWSDGFHYVRSPLVV 766
FG +VW++G +VRSPLVV
Sbjct: 772 SFGALVWTNGKQFVRSPLVV 791
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 782 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-103 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 6e-36 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-27 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-20 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-19 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-17 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-17 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 7e-17 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 5e-16 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-15 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 8e-15 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 9e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-14 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 5e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 7e-14 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-13 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 7e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-12 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 5e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 6e-12 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 1e-11 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 5e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 7e-11 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 7e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-10 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 2e-10 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 6e-10 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 9e-10 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 4e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-09 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 9e-09 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 1e-08 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-08 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-08 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 6e-08 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-07 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-07 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 5e-07 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 9e-07 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 9e-07 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-06 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 9e-06 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-05 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 2e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 2e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-05 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 2e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 3e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 5e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 9e-04 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 0.002 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.002 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 0.003 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-103
Identities = 118/247 (47%), Positives = 150/247 (60%), Gaps = 11/247 (4%)
Query: 105 LKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPS 164
+LHTTRS DF+GL G + G+ I++G+ DTG+WPE SF + P P
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLG-AANAGEGIIIGVLDTGIWPEHPSFADV-GGGPYPH 58
Query: 165 SWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHT 224
+W G CV GE F+P +CN KLIGARY+ G++ G +++ EYRS RD+ GHGTHT
Sbjct: 59 TWPGDCVTGEDFNP-FSCNNKLIGARYFSDGYDAYGG---FNSDGEYRSPRDYDGHGTHT 114
Query: 225 ASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALH 284
ASTAAG++ NA G G A G APRAR+AVYK+CW DG C +DILAA D A+
Sbjct: 115 ASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWP---DGGCFGSDILAAIDQAIA 171
Query: 285 DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSI 344
DGVDVIS S G P + I +A++ G+ V S GN GP S V NVAPW
Sbjct: 172 DGVDVISYSIGGGSP--DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229
Query: 345 CVAASSI 351
VAAS++
Sbjct: 230 TVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-36
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 509 LKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN 568
LKPDI APG+ +LAAW P P D R + F SGTSM+ PHV+GV AL+KSAHP+
Sbjct: 236 LKPDIAAPGVDILAAWTPEGAD---PGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 569 WSPAAIRSALMTTAY 583
WSPAAI+SALMTTAY
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 20/128 (15%)
Query: 489 PAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
A TV SSRGP + S +KPDI APG+ +++ P G SGT
Sbjct: 188 EADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAP---------GSGTGYAR--MSGT 235
Query: 549 SMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGA 608
SM+ PHV+G AL+K AHP+WSPA I++ALM TA +DS V GA
Sbjct: 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTA---KPLYDS-----DGVVYPVSRQGA 287
Query: 609 GHINPMKA 616
G ++ ++A
Sbjct: 288 GRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 492 TVAYFSSRGPSSISPD-ILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSM 550
++YFSSRGP+ D +KPD+ APG +++ P P G SGTSM
Sbjct: 179 GISYFSSRGPT---GDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----SGTSM 231
Query: 551 SCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583
+ PHVSG +AL+ A+P +P ++ L TA
Sbjct: 232 ATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 55/153 (35%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
SA D GHGTH A AG G+ G +G AP+A L YK+ G T
Sbjct: 57 SAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPKADLYAYKVL---GPGGSGTT 105
Query: 273 ADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPE 332
I+AA + A+ DG+DVI+ S G S P I NA++ GV VV + GN GP
Sbjct: 106 DVIIAAIEQAVDDGMDVINLSLGSSVNG-PDDPDAIAIN--NAVKAGVVVVAAAGNSGPA 162
Query: 333 PSLVQN--VAPWSICVAASSIDRTFPTEIVVNS 363
P + + AP +I V AS++ + V S
Sbjct: 163 PYTIGSPATAPSAITVGASTVADVAEADTVGPS 195
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
T+A FS+ G KPDI APG +L++ P SGTSM+
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGDLGGYDSH----------SGTSMA 222
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA-YTRDTSHDSILAGGSMKVSDPFD 605
P V+G AL+ SA+P+ +P +R+ L+TTA D G + +
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLDRSFGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 4e-17
Identities = 59/225 (26%), Positives = 72/225 (32%), Gaps = 60/225 (26%)
Query: 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196
+ V + DTGV P+ G G D
Sbjct: 1 VTVAVIDTGVDPDHPDL----------DGLFGGGDGGNDDDD------------------ 32
Query: 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLA 256
D GHGTH A A S G G AP A+L
Sbjct: 33 ----------NENGPTDPDDGNGHGTHVAGIIAASANNGGG---------VGVAPGAKLI 73
Query: 257 VYKICWGKDSDGKCTEADILAAFDDALHD-GVDVISASFG--ESPPLRPFFASNADIGSF 313
K+ D DG + +DI AA D A D G DVI+ S G SPP +
Sbjct: 74 PVKVL---DGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYA--- 127
Query: 314 NAMQHGVTVVFSGGNDGPEPSLVQN---VAPWSICVAASSIDRTF 355
+ GV VV + GNDGP+ +P I V A D T
Sbjct: 128 -LAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTP 171
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 7e-17
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 494 AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCP 553
A FSS GP + ++ APG+ +L+ +P N + + SGTSM+ P
Sbjct: 163 ASFSSTGP--------EVELAAPGVDILSTYPNN-------------DYAYLSGTSMATP 201
Query: 554 HVSGVVALIKSAHPNWSPAAIRSALMTT 581
HV+GV AL+ S P + A +R AL T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 19/114 (16%)
Query: 480 PSKTSIGKVP-APTVAYFSSRG---------PSSISPDILKPDITAPGIGVLAAWPPNTP 529
+ S+G V A+FSS G P S + KPD+ APG+ V +A
Sbjct: 150 YAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSA------ 203
Query: 530 PTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583
DG ++ SGTSM+ PHV+GV AL+ +AHP+ SP I+ AL TAY
Sbjct: 204 RQGANGDG---QYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 58/239 (24%), Positives = 80/239 (33%), Gaps = 61/239 (25%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G I V + DTG+ F G +R F
Sbjct: 1 GKGITVAVLDTGIDAPHPDFD-------------GRIIRFADFV---------------- 31
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
N R D GHGTH A AGS G +G AP A
Sbjct: 32 ----------NTVNGRTT--PYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGA 72
Query: 254 RLAVYKICWGKDSDGKCTEADILAAFD----DALHDGVDVISASFGESPPLRPFFASNAD 309
L K+ D G +E+DI+A D + + V++ S G +PP +
Sbjct: 73 NLVGVKVL---DDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG-APPDPSYGEDPLC 128
Query: 310 IGSFNAMQHGVTVVFSGGNDGPEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFS 366
G+ VV + GN GP P + + +P I V A +D P + + S FS
Sbjct: 129 QAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGA--VDDNGPHDDGI-SYFS 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 20/94 (21%)
Query: 489 PAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
+A FS+ G ++ D+ APG+ +L+ P + + SGT
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPGGG-------------YGYMSGT 224
Query: 549 SMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
SM+ PHV+G AL+ S +PN + A I+ A++++A
Sbjct: 225 SMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-15
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 29 VYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAA 88
YIV + SH +S EE A S+LY YK+ F+GF+AKL +A
Sbjct: 1 TYIVKFKD--GVSKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEEAE 56
Query: 89 SLAEMEEVISIFESQVLKLH 108
L + +V + QV++LH
Sbjct: 57 KLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 17/93 (18%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+A FSSRGPS+ +KPDI+APG+ + +A P + SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPGGG-------------YGSSSGTSMA 230
Query: 552 CPHVSGVVALIKSAHPNWSPA--AIRSALMTTA 582
PHV+GV AL+ SA+P+ A + L TA
Sbjct: 231 APHVAGVAALLWSANPSLIGDVDATEAILTETA 263
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 211 YRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKC 270
D GHGTH A A +G G+ AP A+L K+
Sbjct: 38 PTPDDDNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKVL----PGSGG 85
Query: 271 TEADILAAFDDAL--HDGVDVISASFGESPPLRPFFASNADIGSFN-AMQHGVTVVFSGG 327
T++++ A + A + + VI+ S G ++S D + N A G V + G
Sbjct: 86 TDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAG 145
Query: 328 NDGPEPSLVQNVAP---WSICVAASSIDRTFPTE 358
N G P +I + + +
Sbjct: 146 NGGDYADNNPVSDPASANNIITVGAVTENGTIAD 179
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-14
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 497 SSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVS 556
S S DI APG +L++ + SGTSM+ P V+
Sbjct: 168 DGTPASPSSNGGAGVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVA 216
Query: 557 GVVALIKSAHPNWSPAAIRSALMTT 581
GV AL+ SA+P+ +PA +++AL++T
Sbjct: 217 GVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 494 AYFSSRGPSSISPD-ILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSC 552
+YFSS GP++ + LKPD+ APG +L+ +P L G + SGTSM+
Sbjct: 189 SYFSSWGPTN---ELYLKPDVAAPGGNILSTYP-------LAGGG----YAVLSGTSMAT 234
Query: 553 PHVSGVVALIKSA-HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
P+V+G AL+ A H SPA +R L +TA D A ++ GAG +
Sbjct: 235 PYVAGAAALLIQARHGKLSPAELRDLLASTAKPL-PWSDGTSALP--DLAPVAQQGAGLV 291
Query: 612 NPMKA 616
N KA
Sbjct: 292 NAYKA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 480 PSKTSIGKVPAPTVAYFSSRGPSSI---SPDIL-KPDITAP-GIGVLAAWPPNTPPTLLP 534
T SS P I +P++ KPD+TAP G+ + PP
Sbjct: 156 YGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPP---- 211
Query: 535 SDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTS 588
NF GTS + PH +GV AL+ SA+P +PA IR AL +TA
Sbjct: 212 --------NF-FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP 256
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 491 PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSM 550
TVA FSSRGP+ +KPD+ APG G+L+A + +SGTSM
Sbjct: 199 DTVASFSSRGPTYDG--RIKPDLVAPGTGILSARSGGGGIGDTSDSA----YTSKSGTSM 252
Query: 551 SCPHVSGVVALI----------KSAHPNWSPAAIRSALMTTA 582
+ P V+G AL+ +P S A +++ L+ +A
Sbjct: 253 ATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 481 SKTSIGKVPAPTVAYFSSRGPSSISPDI-LKPDITAPGIGVLAAWPPNTPPTLLPSDGRS 539
+ + ++ FSS GP+ PD+ LKPDITAPG + + NT
Sbjct: 222 ANKKVPNPNGGQMSGFSSWGPT---PDLDLKPDITAPGGNIYSTVNDNT----------- 267
Query: 540 VKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPA----AIRSALMTTA 582
+ + SGTSM+ PHV+G AL+K +P S +++ LM TA
Sbjct: 268 --YGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA 316
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 41/208 (19%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKA-------CNRKL 186
G+ +VV + D+GV P ++F+ + + + +KA N K+
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFR---LDDDSKAKYS----EEFEAKKKKAGIGYGKYYNEKV 62
Query: 187 IGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIA 246
A Y N + D HG H A AG N G GI
Sbjct: 63 PFAYNYADN------------NDDILDEDDGSSHGMHVAGIVAG----NGDEEDNGEGI- 105
Query: 247 RGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFAS 306
+G AP A+L K+ + G + A +DA+ G DVI+ S G
Sbjct: 106 KGVAPEAQLLAMKV-FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGS-----TAGFV 159
Query: 307 NADIGSFNAMQ----HGVTVVFSGGNDG 330
+ D A++ GV VV + GNDG
Sbjct: 160 DLDDPEQQAIKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FS+ G DI APG+ +L+AW SD SGTSM+
Sbjct: 182 ARASFSNYGSCV--------DIFAPGVDILSAWIG--------SDT---ATATLSGTSMA 222
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
PHV+G+ A + S P+ SPA +++ L+ A
Sbjct: 223 APHVAGLAAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-12
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 359 IVVNSDFSIVGES-FISTEVKAKLVEAF---TYFADGICKCENWMGRKATGRVVLCFSTM 414
+ + + +IVG+S + LV +C + K G++VLC
Sbjct: 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRG- 60
Query: 415 GSVKTEEAEAAAKKANASGLIFAEPMT---ELIAEVDIIPTVRIDIAQGTQLRDYLA 468
G+ A K A +G+I A T +++A+ ++P V +D GT + Y+
Sbjct: 61 GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 33/145 (22%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278
GHGTH A N G GIA G A ++ K +DG T +D + A
Sbjct: 64 GHGTHVAGIIGAV--GNNGI-----GIA-GVAWNVKIMPLKFL---GADGSGTTSDAIKA 112
Query: 279 FDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQN 338
D A+ G +I+ S+G P + + A A+ G+ V + GNDG N
Sbjct: 113 IDYAVDMGAKIINNSWGGGGPSQALRDAIAR-----AIDAGILFVAAAGNDG------TN 161
Query: 339 V-----------APWSICVAASSID 352
I VAA+ +
Sbjct: 162 NDKTPTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 494 AYFSSRGPSSISPDILKPDITAPGIGVLA-AWPPNTPPTLL--PSDGRSVKWNFQSGTSM 550
A +S+ GP+ D++APG + P + S G S + F GTSM
Sbjct: 204 ASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGST-YGFLQGTSM 254
Query: 551 SCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581
+ PHV+GV AL+KS +P+ +PA I S L +T
Sbjct: 255 AAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FSS GP++ LKPD+ A G G+ + +GTS S
Sbjct: 185 NKASFSSIGPTADGR--LKPDVMALGTGIYVINGDGNI-------------TYANGTSFS 229
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
CP ++G++A + AHPNW+ I+ A++ +A
Sbjct: 230 CPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-11
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
++A FS RGP +KPDI APG+ +L A P G + + SGTS++
Sbjct: 358 SIAIFSGRGP--TRDGRIKPDIAAPGVNILTA---------SPGGGYTTR----SGTSVA 402
Query: 552 CPHVSGVVALI 562
V+G AL+
Sbjct: 403 AAIVAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (157), Expect = 7e-11
Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAP-TVAYFSSRGPSSISPDILKPDI 513
I A G + P P+ ++G + TVA FS+ G + DI
Sbjct: 279 IVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPT------GVDI 332
Query: 514 TAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP-NWSPA 572
APG+ +L+ + G + SGTSM+ PHVSGV AL+ SA+P +PA
Sbjct: 333 AAPGVNILS------LSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPA 386
Query: 573 AIRSALMTTAYTRDTSHDSILAGGSMKVSDPF 604
+R+ ++TTA S L GG + D
Sbjct: 387 QVRNLIVTTAGLTPLSGVDNLVGGGLANLDAA 418
|
Length = 508 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278
GHGTH + T G AK G I G AP A L K+ DG + + I+A
Sbjct: 44 GHGTHVSGTIGGGGAK-------GVYI--GVAPEADLLHGKVL----DDGGGSLSQIIAG 90
Query: 279 FDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAM--QHGVTVVFSGGNDGPEPSLV 336
+ A+ DV+S S G + + A+ Q G V S GN+G S
Sbjct: 91 MEWAVEKDADVVSMSLGGTYYSEDPLEE-----AVEALSNQTGALFVVSAGNEGHGTSGS 145
Query: 337 QNVAPWSICVAASSID 352
A ++ V A D
Sbjct: 146 PGSAYAALSVGAVDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D++APG G+L+ P + + SGTSM+ PHV+GV AL+ S P S
Sbjct: 200 DVSAPGGGILSTTPDGD-------------YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 572 AAIRSALMTTA 582
+ +R AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 44/157 (28%), Positives = 55/157 (35%), Gaps = 43/157 (27%)
Query: 192 YVKGFEEEYG--PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGG 249
Y K + G A + D LGHGT A G IA N G
Sbjct: 25 YSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVA----GQIAANGNIKG--------V 72
Query: 250 APRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNAD 309
AP + Y++ S G + I+ A DA DGVDVI+ S G
Sbjct: 73 APGIGIVSYRVF---GSCGSAESSWIIKAIIDAADDGVDVINLSLG----------GYLI 119
Query: 310 IGS--------FNAMQ--------HGVTVVFSGGNDG 330
IG +NA + G VV + GNDG
Sbjct: 120 IGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 52/220 (23%), Positives = 72/220 (32%), Gaps = 62/220 (28%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G + VG+ D+G+ F ++ A YYV
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAG-----------------------------RVSEASYYV 32
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
A + Y S D HGTH A A + G G G AP A
Sbjct: 33 -----------AVNDAGYASNGDGDSHGTHVAGVIAAA------RDGGGMH---GVAPDA 72
Query: 254 RLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIG-- 311
L + S ++ADI AA+D GV +I+ S+G +P + +
Sbjct: 73 TLYSARASASAGSTF--SDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130
Query: 312 --------SFNAMQHGVTVVFSGGNDG-PEPSLVQNVAPW 342
A G VF+ GNDG PSL P+
Sbjct: 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPY 170
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 59/178 (33%), Positives = 78/178 (43%), Gaps = 45/178 (25%)
Query: 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADI 275
D GHGTH A G IA N +G G AP A L Y++ +G G TE I
Sbjct: 66 DCQGHGTHVA----GIIAANPNAYGF-----TGVAPEATLGAYRV-FG--CSGSTTEDTI 113
Query: 276 LAAFDDALHDGVDVISASFG------ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGND 329
+AAF A DG DVI+AS G E P +A A + GV V + GND
Sbjct: 114 IAAFLRAYEDGADVITASLGGPSGWSEDP-----WAVVAS----RIVDAGVVVTIAAGND 164
Query: 330 GPE-------PSLVQNVAPWSICVAASSIDRTF----PT-EIVVNSDFSIVGESFIST 375
G P+ + V +A +S+D F PT E+ + D + G + +ST
Sbjct: 165 GERGPFYASSPASGRGV------IAVASVDSYFSSWGPTNELYLKPDVAAPGGNILST 216
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 23/128 (17%)
Query: 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDS 266
T + +D GHGTH A A A + G G+ G AP A L K+ +
Sbjct: 29 TGDDNNDYQDGNGHGTHVAGIIA---ALDNGV-----GVV-GVAPEADLYAVKVL---ND 76
Query: 267 DGKCTEADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVV 323
DG T +DI+A + A+ +G+D+I+ S G +SP LR A G+ VV
Sbjct: 77 DGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIK--------KAYAAGILVV 128
Query: 324 FSGGNDGP 331
+ GN G
Sbjct: 129 AAAGNSGN 136
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 20/99 (20%)
Query: 511 PDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWS 570
DI APG+ +++A P + SGTSM+ PHV+GV AL A P
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAG 259
Query: 571 PAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609
A+ + L T D D G G
Sbjct: 260 GRALAALLQARLTAART-------TQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FS+ G DI APG+G + + T P L G + + + SGTSM+
Sbjct: 197 NKASFSNYGRWV--------DIAAPGVGTILS----TVPKLDGDGGGN--YEYLSGTSMA 242
Query: 552 CPHVSGVVALIKSAHPNW-SPAAIRSALMTT 581
PHVSGV AL+ S P+ +P IR L +
Sbjct: 243 APHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
T + FS GP D+ APG +++ P DG + SGTS +
Sbjct: 189 TPSSFSLPGP--------WVDLAAPGENIVSLSPG--------GDGLAT----TSGTSFA 228
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
P VSG AL++S P+ + A +R + TA D GG D + +G G +
Sbjct: 229 APFVSGTAALVRSRFPDLTAAQVRRRIEATA-------DHPARGG----RDDY-VGYGVV 276
Query: 612 NPMKA 616
+P+ A
Sbjct: 277 DPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPA 572
+ APG + + P + SGTS + PHVSG AL+ P +
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 573 AIRSALMTTA 582
+R L+TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 494 AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCP 553
A +S+ G D+ APG+G+ P G +F SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYG---SF-SGTSFASP 214
Query: 554 HVSGVVALIKSAHPNWSPAAIRSALMTT 581
+GV ALI SA+PN +PA + L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-08
Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 372 FISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANA 431
LV G C E+ G++VL G E A++A A
Sbjct: 1 SPGGTGTGPLVYVGNGDDAGGCCPEDLADSDVKGKIVLVRR--GGCSFVEKAENAQRAGA 58
Query: 432 SGLIFA------EPMTELIAEVDIIPTVRIDIAQGTQL 463
+G+I T IP V I G L
Sbjct: 59 AGVIIYNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278
GHGTH A AG ++ L +G+ AP+A+L I G S + D+
Sbjct: 55 GHGTHVAGIIAGK-GNDSSSISLYKGV----APKAKLYFQDI--GDTSGNLSSPPDLNKL 107
Query: 279 FDDALHDGVDVISASFGESPPLRPFFASNA---DIGSFNAMQHGVTVVFSGGNDGPE--- 332
F G + S S+G P+ + A D ++N + VFS GNDG +
Sbjct: 108 FSPMYDAGARISSNSWG--SPVNNGYTLLARAYDQFAYNNPD--ILFVFSAGNDGNDGSN 163
Query: 333 ----PSLVQNVAPWSICVAASS 350
P+ +NV + V AS+
Sbjct: 164 TIGSPATAKNV----LTVGASN 181
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 45/142 (31%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEA 273
A D GHGTH A A + N G G+A G AP+A++ K+ D++G + A
Sbjct: 64 AMDDNGHGTHVAGIIAAAT--NNGT-----GVA-GVAPKAKIMPVKVL---DANGSGSLA 112
Query: 274 DILAAFDDALHDGVDVISASFGESPPLRPF-FASNADIGSFNAMQHGVTVVFSGGNDGPE 332
DI A G VI+ S G A N A GV VV + GN+G
Sbjct: 113 DIANGIRYAADKGAKVINLSLGGGLGSTALQEAINY------AWNKGVVVVAAAGNEGVS 166
Query: 333 PSLVQNVAPWSICVAASSIDRT 354
P +I VAA+ D
Sbjct: 167 SVSYPAAYPGAIAVAATDQDDK 188
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSC 552
VA FS+ G ++ D+ APG + + P N + SGTSM+
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYSTTPDNE-------------YETDSGTSMAA 260
Query: 553 PHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
P VSGV ALI S +PN + ++ ++ +
Sbjct: 261 PVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 29/97 (29%)
Query: 497 SSRGPSSISPD-ILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQS-----GTSM 550
SSRGP+ D L I+APG G +A+ P W Q GTSM
Sbjct: 333 SSRGPT---ADGALGVSISAPG-GAIASVP---------------NWTLQGSQLMNGTSM 373
Query: 551 SCPHVSGVVALI----KSAHPNWSPAAIRSALMTTAY 583
S P+ G +AL+ K+ ++P ++R AL TA
Sbjct: 374 SSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSC 552
V +SSRGPS KPD+ A IG A W P + + ++ GTSM+
Sbjct: 221 VVSWSSRGPSIAG--DPKPDLAA--IGAFA-WAPGRVLDSGGALDGNEAFDLFGGTSMAT 275
Query: 553 PHVSGVVALIKSAH------PNWSPAAIRSALMTTA 582
P +G AL+ SA + P +R+ LM+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/193 (25%), Positives = 69/193 (35%), Gaps = 43/193 (22%)
Query: 195 GFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRAR 254
+ +Y + N D GHGTHT T G+ G G G AP AR
Sbjct: 31 SADHDYNWFDPVGN--TPLPYDDNGHGTHTMGTMVGND---------GDGQQIGVAPGAR 79
Query: 255 LAVYKICWGKDSDGKCTEADILAA-------FDDALHD-----GVDVISASFGESPPLRP 302
+ D +G +AD L D A + DVI+ S+G
Sbjct: 80 WIACRAL---DRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNE 135
Query: 303 FFASNADIGSFNAMQH-GVTVVFSGGNDGPE-PSLVQNVA--PWSICVAASSIDRTFPTE 358
+ + A + G+ VF+ GNDGP +L A P S V A+ +
Sbjct: 136 WLQ-----PAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVL--- 187
Query: 359 IVVNSDFSIVGES 371
+DFS G S
Sbjct: 188 ----ADFSSRGPS 196
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 36/127 (28%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 133 YGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYY 192
G ++VGI DTG+ F+ E + I W T G G Y
Sbjct: 2 TGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-------PGGYYGGGEY 54
Query: 193 VKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPR 252
+ L + + +RD GHGTH A AAG+ N F +G AP
Sbjct: 55 TEEIINAA--LASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDF--------KGVAPE 104
Query: 253 ARLAVYK 259
A L V K
Sbjct: 105 AELIVVK 111
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 43/134 (32%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278
GHGT A AA G G AP A+L +I DS G +DI A
Sbjct: 41 GHGTACAGVAAAVGNNGLG--------VAGVAPGAKLMPVRIA---DSLGYAYWSDIAQA 89
Query: 279 FDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQH--GVTVVFSGGNDGPEPSLV 336
A +G DVIS S+G S S+A + ++ G V+F+ GN G S
Sbjct: 90 ITWAADNGADVISNSWGGSDST--ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSG 147
Query: 337 QNVAPWSICVAASS 350
P I VAA+
Sbjct: 148 YAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPA 572
+A G+ ++A P GR + SG S + PHV+G+VAL+ S P+
Sbjct: 165 FSADGVDIIAPAP----------HGRYLTV---SGNSFAAPHVTGMVALLLSEKPDIDAN 211
Query: 573 AIRSALMTTA 582
++ L A
Sbjct: 212 DLKRLLQRLA 221
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 41/154 (26%), Positives = 54/154 (35%), Gaps = 45/154 (29%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARL-AVYKICWGKDSDGKCT 271
D GHGTH A T G G A +A L AV K+ D +G T
Sbjct: 58 PDSDCNGHGTHVAGTVGGKTY--------------GVAKKANLVAV-KVL---DCNGSGT 99
Query: 272 EADILAAFDDALHDGVD-----VISASFGESPPLRPFFASNADIGSFNAM-QHGVTVVFS 325
+ I+A + +D V + S G AS A + A GV VV +
Sbjct: 100 LSGIIAGLEWVANDATKRGKPAVANMSLGGG-------ASTALDAAVAAAVNAGVVVVVA 152
Query: 326 GGNDGPEPSLVQNVAPWS-------ICVAASSID 352
GN Q+ +S I V A+ D
Sbjct: 153 AGNSN------QDACNYSPASAPEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 41/142 (28%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGG--APRARLAVYKICWGKDSDGKCTEADIL 276
GHGTH A T A A N G+G GIA G AP ++ +I + +
Sbjct: 62 GHGTHVAGTIA---AVNNNGGGVG-GIAGAGGVAPGVKIMSIQIF---AGRYYVGDDAVA 114
Query: 277 AAFDDALHDGVDVISASFG------ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDG 330
AA A +G ++ S+G SP L+ F + + + G VVFS GN
Sbjct: 115 AAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLD-GGIVVFSAGNSY 173
Query: 331 PEPSLVQNVAPWSICVAASSID 352
+ P I VAA +
Sbjct: 174 TDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581
AA+P TPP DG W SGTS + P V+GV AL+ A+P SP RS L T
Sbjct: 230 AAFPDGTPPN----DG----WGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKT 281
Query: 582 AYTRDTSH 589
A RD +
Sbjct: 282 A--RDVTK 287
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D APG+ V A G + + SGTS + P V+ +AL+ A P P
Sbjct: 168 DFAAPGVDVWVA----------APGG---GYRYVSGTSFAAPFVTAALALLLQASPLA-P 213
Query: 572 AAIRSALMTTA 582
R+ L TA
Sbjct: 214 DDARARLAATA 224
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 43/171 (25%), Positives = 63/171 (36%), Gaps = 38/171 (22%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
+D GHGTH A T G G G+ARG A +A+ G G +
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVP-----GPRYGVARG----AEIALIGKVLGDGGGG---D 88
Query: 273 ADILAAFDDALHDGVDVISASFGESPP-----------------------LRPFFASNAD 309
ILA A+ +G DVIS S G P R F A
Sbjct: 89 GGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTL 148
Query: 310 IGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA---SSIDRTFPT 357
+ + A+ G +V + GN+ P+ + V + C +A +++ T
Sbjct: 149 VAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGALGRT 199
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 29/123 (23%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278
HGT A A N G G G+A P A+L ++ DG T+ +
Sbjct: 85 SHGTRCAGEIAA--VGNNGI--CGVGVA----PGAKLGGIRM-----LDGDVTDVVEAES 131
Query: 279 FDDALHDGVDVISASFGESPPLRPF--FASNADIGSFNAMQHGVT---------VVFSGG 327
D +D+ S S+G + A A+++GVT V++ G
Sbjct: 132 LGLN-PDYIDIYSNSWGPDDDGKTVDGPGPLAQR----ALENGVTNGRNGKGSIFVWAAG 186
Query: 328 NDG 330
N G
Sbjct: 187 NGG 189
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 216 DFLGHGTHTASTAAG-SIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEAD 274
DF HGT AS AAG + + G+ + RG AP A++A K W D
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD-----VIYA 108
Query: 275 IL--AAFDDALHDG---------VDVISASFGESPPLRPFFASNADIGS--FNAM--QHG 319
L A FD VDVIS S+G S +A DI S +A+ G
Sbjct: 109 WLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTG 168
Query: 320 VTVVFSGGNDGP 331
V +V + GN GP
Sbjct: 169 VPIVSAAGNGGP 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 220 HGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAF 279
HGTH AS FG G AP R I + C++ D+ A
Sbjct: 52 HGTHVASL----------IFGQPCSSVEGIAPLCR--GLNIPIFAEDRRGCSQLDLARAI 99
Query: 280 DDALHDGVDVISASFGE-SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQN 338
+ AL G +I+ S G + + Q+ V +V + GN+G V
Sbjct: 100 NLALEQGAHIINISGGRLTQTGEADPILANAVA--MCQQNNVLIVAAAGNEGCACLHVPA 157
Query: 339 VAPWSICVAA 348
P + V A
Sbjct: 158 ALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.2 bits (98), Expect = 9e-04
Identities = 44/165 (26%), Positives = 56/165 (33%), Gaps = 18/165 (10%)
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYK 259
+ D GHGTH A T A I N G AP A+L + K
Sbjct: 165 VAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGVA-------GVAPGAKLLLVK 217
Query: 260 ICWGKDSDGKCTEADILAAFDDA--LHDGVDVISASFGESPPLRPFFASNADIGSFNAMQ 317
+ G +D+ + A L DVI+ S G S A D + A
Sbjct: 218 VL-GSGGGSGEL-SDVAEGIEGAANLGGPADVINLSLGGSLSDSASPAL-GDALAAAANA 274
Query: 318 HGVTVVFSGGNDGPEPSLVQNVAPWS------ICVAASSIDRTFP 356
GV +V + GNDG S P S I V A + T
Sbjct: 275 GGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVA 319
|
Length = 508 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWN--------- 543
++ FS+ G S I D+ APG G + + + +
Sbjct: 203 LSSFSNYGNSRI-------DLAAPG-GDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGY 254
Query: 544 -FQSGTSMSCPHVSGVVALIKSAHPNWSP 571
+ GTS++ P VSG +ALI +P P
Sbjct: 255 AYMYGTSLAAPKVSGALALIIDKNPLKKP 283
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
Query: 220 HGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKC----TEADI 275
HGTH A AA + G+ AP A++ KI D + T +
Sbjct: 187 HGTHVAGIAAAHFPEEPERNGV--------APGAQIVSIKI-----GDTRLGSMETGTAL 233
Query: 276 LAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSF-NAMQ-----HGVTVVFSGGND 329
+ A A+ D+I+ S+GE+ + G M HGV V S GN+
Sbjct: 234 VRAMIAAIETKCDLINMSYGEA-------THWPNSGRIIELMNEAVNKHGVIFVSSAGNN 286
Query: 330 GPEPSLV 336
GP S V
Sbjct: 287 GPALSTV 293
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 21/98 (21%)
Query: 493 VAYFSSRGPSSISPDI----LKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
+A FSSRG ++ +KPDI G GV + L R++ SGT
Sbjct: 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYG--------SKLKGGCRAL-----SGT 212
Query: 549 SMSCPHVSGVVALIKSAHPN----WSPAAIRSALMTTA 582
S++ P V+G VAL+ S P +PA+++ AL+ +A
Sbjct: 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESA 250
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 486 GKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTP--------PTLLPSDG 537
V +S GP S P +KPD+ A G G LA P TL G
Sbjct: 191 SAVGPAPAGATTSSGPGS--PGPIKPDVVAFG-GNLAYDPSGNAADGDLSLLTTLSSPSG 247
Query: 538 RSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALM 579
GTS + P + + A + + P SP IR AL+
Sbjct: 248 GGFV--TVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.9 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.86 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.7 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.23 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.21 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.87 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.79 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.67 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.64 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.6 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.56 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.5 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.45 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.43 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.41 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.4 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.39 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.38 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.35 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.34 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.31 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.3 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.16 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.06 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.02 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.19 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 97.06 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.98 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.96 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.85 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 95.64 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.16 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.07 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 94.92 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 93.42 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.0 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 90.92 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 89.24 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 87.78 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=450.61 Aligned_cols=307 Identities=53% Similarity=0.892 Sum_probs=259.8
Q ss_pred eecccccccccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCc
Q 003970 105 LKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNR 184 (782)
Q Consensus 105 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~ 184 (782)
++++++++++|+|+... ....+|..+++|+||+|||||||||++||+|++.. ..+++..|.+.|..+..+.. ..||+
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA-WGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVG-GGPYPHTWPGDCVTGEDFNP-FSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCC-CCcccccccCCCCccEEEEEeCCCCCCCcCcccCC-CCCCCCCCCCcccCCCCcCc-cCcCC
Confidence 46889999999999875 22236888999999999999999999999999876 77888899999999887766 78999
Q ss_pred ceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCC
Q 003970 185 KLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGK 264 (782)
Q Consensus 185 kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~ 264 (782)
|++|.++|.+++...... ....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..
T Consensus 78 ki~g~~~~~~~~~~~~~~---~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~ 154 (307)
T cd04852 78 KLIGARYFSDGYDAYGGF---NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD 154 (307)
T ss_pred eEEEEEEcccchhhccCc---ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC
Confidence 999999998876543220 11224467789999999999999999887777677777788999999999999999874
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceE
Q 003970 265 DSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSI 344 (782)
Q Consensus 265 ~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vi 344 (782)
+ .+..+++++||++|++++++|||||||... ...+.+.+..++.++.++|++||+||||+|+...+.++..||++
T Consensus 155 ~---~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~--~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 155 G---GCFGSDILAAIDQAIADGVDVISYSIGGGS--PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred C---CccHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 4 588999999999999999999999999884 24566778888889999999999999999988888888899999
Q ss_pred EecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHH
Q 003970 345 CVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEA 424 (782)
Q Consensus 345 tVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~ 424 (782)
+|||++
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999721
Q ss_pred HHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC
Q 003970 425 AAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI 504 (782)
Q Consensus 425 ~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~ 504 (782)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 505 SPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 505 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 ----~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 ----LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ----CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 468999999999999875311 112223358999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=443.53 Aligned_cols=297 Identities=19% Similarity=0.199 Sum_probs=215.3
Q ss_pred cccccCCCCccCC--CCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCc----ceeeeE
Q 003970 117 GLILDNTGEVTPV--QLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNR----KLIGAR 190 (782)
Q Consensus 117 gl~~~~~~~~~~~--~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~----kiig~~ 190 (782)
+++.. +++++|. .+.+|+||+|||||||||++||||.+.- ..-+....|.. .++ .+++ .+.| +
T Consensus 297 gLd~i-~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni--~~n~~el~Grd----giD---dD~nG~vdd~~G-~ 365 (639)
T PTZ00262 297 GLDLT-RLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI--DVNVKELHGRK----GID---DDNNGNVDDEYG-A 365 (639)
T ss_pred Ccchh-CchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc--ccccccccCcc----ccc---cccCCccccccc-c
Confidence 44443 5666776 4568999999999999999999998542 10000011110 000 0011 1111 2
Q ss_pred ecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCC
Q 003970 191 YYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKC 270 (782)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~ 270 (782)
+|.+ ...+|.|..||||||||||||...++. .+.||||+|+|+++|+++..+ .+
T Consensus 366 nfVd---------------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G---~G 419 (639)
T PTZ00262 366 NFVN---------------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHK---LG 419 (639)
T ss_pred cccC---------------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCC---Cc
Confidence 2221 123568899999999999999754322 368999999999999998776 57
Q ss_pred CHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC--------------c
Q 003970 271 TEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL--------------V 336 (782)
Q Consensus 271 ~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~ 336 (782)
..+++++||+||++.|++|||||||... +...+..++.+|.++|++||+||||+|+.... +
T Consensus 420 ~~sdI~~AI~yA~~~GA~VINmSlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~Y 494 (639)
T PTZ00262 420 RLGDMFKCFDYCISREAHMINGSFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVY 494 (639)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccC
Confidence 8899999999999999999999999763 33467788889999999999999999854211 1
Q ss_pred cc----CCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEee
Q 003970 337 QN----VAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFS 412 (782)
Q Consensus 337 ~~----~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~ 412 (782)
+. ..|++|+|||...+..
T Consensus 495 Paa~s~~~~nVIaVGAv~~d~~---------------------------------------------------------- 516 (639)
T PTZ00262 495 PPILSKKLRNVITVSNLIKDKN---------------------------------------------------------- 516 (639)
T ss_pred ChhhhccCCCEEEEeeccCCCC----------------------------------------------------------
Confidence 11 1367788887432110
Q ss_pred CCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCc
Q 003970 413 TMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPT 492 (782)
Q Consensus 413 g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 492 (782)
....
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0112
Q ss_pred cccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHH
Q 003970 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPA 572 (782)
Q Consensus 493 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~ 572 (782)
.+.||++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456677633 369999999999999875 89999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCccccCCCCCcCCCCCcc-ccccCccccCCCceee
Q 003970 573 AIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG-AGHINPMKAMDPGLIY 623 (782)
Q Consensus 573 ~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~glv~ 623 (782)
||+++|++||.++... +..+| .|+||+.+|++..+-+
T Consensus 581 qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999875321 11233 3899999999866644
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=435.16 Aligned_cols=410 Identities=23% Similarity=0.210 Sum_probs=259.6
Q ss_pred CCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccc-ccccccCCCCCCCCCC
Q 003970 132 AYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVK-GFEEEYGPLNASTNRE 210 (782)
Q Consensus 132 ~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~-~~~~~~~~~~~~~~~~ 210 (782)
++|+||+|||||||||+.||+|++.++.+++...|++....+.. .....+..++.+ ..+...... ...+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~---~p~~ 70 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-------PGGYYGGGEYTEEIINAALASD---NPYD 70 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC-------CccccCceEEeHHHHHHHHhcC---Cccc
Confidence 47999999999999999999999888889999999987664321 112222222222 111111110 1112
Q ss_pred CCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCC-------CCCCHHHHHHHHHHHh
Q 003970 211 YRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSD-------GKCTEADILAAFDDAL 283 (782)
Q Consensus 211 ~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~-------~~~~~~~i~~ai~~a~ 283 (782)
.....|..||||||||||||+..++ ..+.||||+|+|+++|++...+.. ..+..++++.||+|++
T Consensus 71 ~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~ 142 (455)
T cd07478 71 IVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLY 142 (455)
T ss_pred cCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHH
Confidence 3456789999999999999986432 346899999999999999877521 0267889999999998
Q ss_pred hcC-----CcEEEecccCCCCCCCCccChHHHHHHhhhcc-CceEEEecCCCCCCCCCcccC-----CCc--eEEecccc
Q 003970 284 HDG-----VDVISASFGESPPLRPFFASNADIGSFNAMQH-GVTVVFSGGNDGPEPSLVQNV-----APW--SICVAASS 350 (782)
Q Consensus 284 ~~g-----vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----ap~--vitVgAs~ 350 (782)
+.. +.|||||||...+ .+...+.++.++..+..+ |++||+||||+|....+.... ... -+.|+.
T Consensus 143 ~~a~~~~~p~VInlSlG~~~g-~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~-- 219 (455)
T cd07478 143 DKALELNKPLVINISLGTNFG-SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE-- 219 (455)
T ss_pred HHHHHhCCCeEEEEccCcCCC-CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--
Confidence 753 5699999998753 344566777777777665 999999999999754333221 111 133433
Q ss_pred cCcccceeEEeCCccEEEeeeeecccce-------------eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc
Q 003970 351 IDRTFPTEIVVNSDFSIVGESFISTEVK-------------AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV 417 (782)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~-------------~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~ 417 (782)
.++.+..++|......+.-.-+.+.... +.++.... ..|.... .+....|.-.+..+-.
T Consensus 220 ~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t----~i~v~y~-~~~~~~g~~~i~i~~~--- 291 (455)
T cd07478 220 GEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT----TVYVYYY-LPEPYTGDQLIFIRFK--- 291 (455)
T ss_pred CCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe----EEEEEEc-CCCCCCCCeEEEEEcc---
Confidence 2233333444432222111111110000 11111111 1111111 1122233222222211
Q ss_pred cHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCc----cccC-CCCCCc
Q 003970 418 KTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSK----TSIG-KVPAPT 492 (782)
Q Consensus 418 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~----~~~~-~~~~~~ 492 (782)
-...|.|.+.++........++.|+|.-.+...+..+ +. .....+.++-... ++.. ....+.
T Consensus 292 --------~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f----~~-~~~~~tit~Pa~~~~vitVga~~~~~~~ 358 (455)
T cd07478 292 --------NIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRF----LE-PDPYTTLTIPGTARSVITVGAYNQNNNS 358 (455)
T ss_pred --------CCCccceEEEEEeccCCCceEEEEecCcCcCCCCCEe----ec-CCCCceEecCCCCCCcEEEEEEeCCCCc
Confidence 1345888888887765444566677754443322211 11 2222222221111 1111 123456
Q ss_pred cccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC------
Q 003970 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH------ 566 (782)
Q Consensus 493 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------ 566 (782)
++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 359 ~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~ 423 (455)
T cd07478 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGND 423 (455)
T ss_pred ccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCC
Confidence 99999999995 7999999999999999999875 89999999999999999999999975
Q ss_pred CCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccc
Q 003970 567 PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609 (782)
Q Consensus 567 P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 609 (782)
|.|++++||++|++||++... ..+++.+||||
T Consensus 424 p~~~~~~ik~~L~~tA~~~~~-----------~~~pn~~~GyG 455 (455)
T cd07478 424 PYLYGEKIKTYLIRGARRRPG-----------DEYPNPEWGYG 455 (455)
T ss_pred CCCCHHHHHHHHHHhCccCCC-----------CCCCCCCCCCC
Confidence 567999999999999997642 24577899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=412.53 Aligned_cols=289 Identities=29% Similarity=0.306 Sum_probs=191.0
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|+|||||||.+||||.+...+. |.. .|+ +...+....++.. .....
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~~-----~~~------~~d----~~~~~~~g~d~~~--------------~~~~~ 51 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNFS-----WKL------KFD----YKAYLLPGMDKWG--------------GFYVI 51 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCCC-----ccc------ccC----cCCCccCCcCCCC--------------CccCC
Confidence 799999999999999999996443111 000 000 0011111110000 01134
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccC-CcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHH-------HHHHH--h
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLG-RGIARGGAPRARLAVYKICWGKDSDGKCTEADILA-------AFDDA--L 283 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~-~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~-------ai~~a--~ 283 (782)
+.|.+||||||||||||+...+.+.+++. ...+.||||+|+|+.+|++...+ .+....+.+ +++|+ .
T Consensus 52 ~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 52 MYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred CCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhcc
Confidence 67899999999999999864433322221 23579999999999999997543 232333333 33443 4
Q ss_pred hcCCcEEEecccCCCCCCC-C--ccChHHHHHHh-hhccCceEEEecCCCCCCCCCcccC--CCceEEecccccCcccce
Q 003970 284 HDGVDVISASFGESPPLRP-F--FASNADIGSFN-AMQHGVTVVFSGGNDGPEPSLVQNV--APWSICVAASSIDRTFPT 357 (782)
Q Consensus 284 ~~gvdVIn~SlG~~~~~~~-~--~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~~--ap~vitVgAs~~d~~~~~ 357 (782)
+++++|||||||....... + ..+..+..... +.++|+++|+||||+|+...++..+ ++++|+|||++.....+.
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~ 208 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF 208 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch
Confidence 6899999999998631000 0 11222322222 2489999999999999876555544 689999999753211000
Q ss_pred eEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEe
Q 003970 358 EIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFA 437 (782)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~ 437 (782)
.+.
T Consensus 209 ~~~----------------------------------------------------------------------------- 211 (311)
T cd07497 209 YLF----------------------------------------------------------------------------- 211 (311)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecC
Q 003970 438 EPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPG 517 (782)
Q Consensus 438 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 517 (782)
.......+.++.||||||+. ++++||||+|||
T Consensus 212 ----------------------------------------------~~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG 243 (311)
T cd07497 212 ----------------------------------------------GYLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIG 243 (311)
T ss_pred ----------------------------------------------ccccCCCCCccccccCCCCc--ccCCCCceeccC
Confidence 00011245689999999995 699999999999
Q ss_pred ceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 003970 518 IGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP------NWSPAAIRSALMTTA 582 (782)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~lsp~~Ik~~L~~TA 582 (782)
++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999877543211 011223799999999999999999999999986 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=402.18 Aligned_cols=244 Identities=28% Similarity=0.346 Sum_probs=199.2
Q ss_pred CCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCC
Q 003970 128 PVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAST 207 (782)
Q Consensus 128 ~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 207 (782)
|..+++|+||+|||||||||.+||+|.+.. . . .+|.
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~--~------------~----------------~~~~-------------- 36 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK--E------------R----------------TNWT-------------- 36 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc--c------------c----------------cccC--------------
Confidence 889999999999999999999999996321 0 0 0010
Q ss_pred CCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCC
Q 003970 208 NREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGV 287 (782)
Q Consensus 208 ~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gv 287 (782)
+.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ....++++++|+||+++++
T Consensus 37 --~~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 37 --NEKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ---VSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred --CCCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC---CchHHHHHHHHHhhhhcCC
Confidence 011345778999999999998742 248999999999999998765 4677889999999999999
Q ss_pred cEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccC--CCceEEecccccCcccceeEEeCCcc
Q 003970 288 DVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNV--APWSICVAASSIDRTFPTEIVVNSDF 365 (782)
Q Consensus 288 dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~--ap~vitVgAs~~d~~~~~~~~~~~~~ 365 (782)
||||||||... +.+.++..++.++.++|++||+||||+|+...+...+ .+++|+|||...
T Consensus 101 ~Vin~S~G~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------- 162 (255)
T cd07479 101 DVLNLSIGGPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------- 162 (255)
T ss_pred CEEEeeccCCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc--------------
Confidence 99999999763 2345666677788899999999999999865554443 588999998431
Q ss_pred EEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccc
Q 003970 366 SIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIA 445 (782)
Q Consensus 366 ~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~ 445 (782)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC----CCCCcccceeecCceEE
Q 003970 446 EVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI----SPDILKPDITAPGIGVL 521 (782)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~ 521 (782)
.+.++.|||+|++.. ..+++||||+|||.+|+
T Consensus 163 --------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~ 198 (255)
T cd07479 163 --------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVY 198 (255)
T ss_pred --------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCee
Confidence 345689999996531 35788999999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccCC
Q 003970 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP----NWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~lsp~~Ik~~L~~TA~~~~ 586 (782)
++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 199 ~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 199 GSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 876654 788999999999999999999999998 7999999999999999753
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=402.81 Aligned_cols=271 Identities=24% Similarity=0.218 Sum_probs=200.2
Q ss_pred CCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCC
Q 003970 131 LAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNRE 210 (782)
Q Consensus 131 ~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 210 (782)
+++|+||+|+|||||||..||+|.+-. -.. +.+...+.. .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~-~~~------------------------l~~~~~~~~---------------~ 40 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQA-SGD------------------------LPGNVNVLG---------------D 40 (275)
T ss_pred CCCCCceEEEEEeCCcccccccccccc-CCC------------------------CCcceeecc---------------c
Confidence 579999999999999999999654322 011 111100100 0
Q ss_pred CCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEE
Q 003970 211 YRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVI 290 (782)
Q Consensus 211 ~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 290 (782)
.....|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||+++|++||
T Consensus 41 ~~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 41 LDGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADII 94 (275)
T ss_pred cCCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEE
Confidence 1234578899999999994 78999999998873 447899999999999999999
Q ss_pred EecccCCCCCCCCccChHHHHHHhhhcc-CceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeEEeCCccEEE
Q 003970 291 SASFGESPPLRPFFASNADIGSFNAMQH-GVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEIVVNSDFSIV 368 (782)
Q Consensus 291 n~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~ 368 (782)
|||||.... ..+.+..+..++.++.++ |++||+||||+|+.... .+...|++|+|||++.+.......
T Consensus 95 n~S~g~~~~-~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------- 164 (275)
T cd05562 95 VDDIGYLNE-PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------- 164 (275)
T ss_pred EecccccCC-CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------
Confidence 999998641 122345677788888887 99999999999975432 244579999999976432110000
Q ss_pred eeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccc
Q 003970 369 GESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVD 448 (782)
Q Consensus 369 g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~ 448 (782)
|
T Consensus 165 ------------------------~------------------------------------------------------- 165 (275)
T cd05562 165 ------------------------D------------------------------------------------------- 165 (275)
T ss_pred ------------------------c-------------------------------------------------------
Confidence 0
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc-eEEeecCCC
Q 003970 449 IIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI-GVLAAWPPN 527 (782)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~ 527 (782)
.. ........+.||++||+. ++++||||+|||. ++.+.+..+
T Consensus 166 ---------------------~~--------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~~ 208 (275)
T cd05562 166 ---------------------PA--------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDGD 208 (275)
T ss_pred ---------------------cc--------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcCC
Confidence 00 000012345678889984 6889999999975 445544433
Q ss_pred CCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcc
Q 003970 528 TPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG 607 (782)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 607 (782)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||
T Consensus 209 -------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G 263 (275)
T cd05562 209 -------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASG 263 (275)
T ss_pred -------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcC
Confidence 78999999999999999999999999999999999999999987642 22556899
Q ss_pred ccccCccccCC
Q 003970 608 AGHINPMKAMD 618 (782)
Q Consensus 608 ~G~vn~~~Al~ 618 (782)
||+||+.+|++
T Consensus 264 ~G~vda~~Av~ 274 (275)
T cd05562 264 SGLVDADRAVA 274 (275)
T ss_pred cCcccHHHHhh
Confidence 99999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=411.38 Aligned_cols=314 Identities=29% Similarity=0.339 Sum_probs=233.9
Q ss_pred ccCCCCC-CCCCcEEEEeccccCCCCCCCCCCCCCCCCCC-----CccceeeccCcCCCCcccCcceeeeEecccccccc
Q 003970 126 VTPVQLA-YGDDIVVGIFDTGVWPESESFQEEPSMSPIPS-----SWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE 199 (782)
Q Consensus 126 ~~~~~~~-~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~-----~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~ 199 (782)
++|+++. +|+||+|+|||||||++||+|.+.. ..+... .+...+.. .+. .+++.+++..+.|.+.....
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~ 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDD-DSKAKYSEEFEAKKKKAGI--GYG--KYYNEKVPFAYNYADNNDDI 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCC-CcccccchhhhhhhhcccC--CCC--cccccCCCeeEcCCCCCCcc
Confidence 3788887 9999999999999999999998664 111100 11111111 111 45667777777776542211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeC--CCCCCCCCHHHHHH
Q 003970 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWG--KDSDGKCTEADILA 277 (782)
Q Consensus 200 ~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~--~~~~~~~~~~~i~~ 277 (782)
....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|++.. .. .+....+++
T Consensus 76 ------------~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~---~~~~~~~~~ 135 (346)
T cd07475 76 ------------LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG---STYDDAYAK 135 (346)
T ss_pred ------------CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC---CCCHHHHHH
Confidence 1245789999999999999875421 1235799999999999999974 33 578889999
Q ss_pred HHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcc----------------cCCC
Q 003970 278 AFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQ----------------NVAP 341 (782)
Q Consensus 278 ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap 341 (782)
|++++++.|++|||||||.... .......+..++.++.++|++||+||||+|....... ...+
T Consensus 136 ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 136 AIEDAVKLGADVINMSLGSTAG-FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHHcCCCEEEECCCcCCC-CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 9999999999999999999852 2234556777888899999999999999985432211 1245
Q ss_pred ceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHH
Q 003970 342 WSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEE 421 (782)
Q Consensus 342 ~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~ 421 (782)
++|+||++...
T Consensus 215 ~~i~Vga~~~~--------------------------------------------------------------------- 225 (346)
T cd07475 215 DVLTVASANKK--------------------------------------------------------------------- 225 (346)
T ss_pred CceEEeecccc---------------------------------------------------------------------
Confidence 66777663310
Q ss_pred HHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCC
Q 003970 422 AEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGP 501 (782)
Q Consensus 422 k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 501 (782)
......+.++.||+|||
T Consensus 226 ---------------------------------------------------------------~~~~~~~~~~~~S~~G~ 242 (346)
T cd07475 226 ---------------------------------------------------------------VPNPNGGQMSGFSSWGP 242 (346)
T ss_pred ---------------------------------------------------------------cCCCCCCccCCCcCCCC
Confidence 00112456789999999
Q ss_pred CCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHH----
Q 003970 502 SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAA---- 573 (782)
Q Consensus 502 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~---- 573 (782)
+. .+++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 243 ~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ 307 (346)
T cd07475 243 TP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDL 307 (346)
T ss_pred Cc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 95 6899999999999999988764 7899999999999999999999998 79999877
Q ss_pred HHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCC
Q 003970 574 IRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 574 Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
||++|++||.+..... .....+.+..+|+|+||+.+|++
T Consensus 308 ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 308 VKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 7889999998532111 33455677889999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=405.02 Aligned_cols=297 Identities=30% Similarity=0.361 Sum_probs=229.3
Q ss_pred CCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCC
Q 003970 124 GEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPL 203 (782)
Q Consensus 124 ~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~ 203 (782)
++.+|+.+++|+||+|||||+|||++||+|.+.. .+ +.++.+.+++..+.....
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~--~~---------------------~~~~~~~~d~~~~~~~~~--- 55 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCF--GP---------------------GCKVAGGYDFVGDDYDGT--- 55 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCC--CC---------------------CceeccccccCCcccccc---
Confidence 5679999999999999999999999999997542 11 011122222221100000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh
Q 003970 204 NASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL 283 (782)
Q Consensus 204 ~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~ 283 (782)
....+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ....+.++++|++|+
T Consensus 56 --~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~ 121 (312)
T cd07489 56 --NPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSG---STTEDTIIAAFLRAY 121 (312)
T ss_pred --cCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCC---CCCHHHHHHHHHHHH
Confidence 01112345677899999999999998643 2358999999999999998665 577888999999999
Q ss_pred hcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC---CcccCCCceEEecccccCcccceeEE
Q 003970 284 HDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS---LVQNVAPWSICVAASSIDRTFPTEIV 360 (782)
Q Consensus 284 ~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~d~~~~~~~~ 360 (782)
+++++|||+|||.. ..+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 122 ~~~~~iIn~S~g~~---~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------- 188 (312)
T cd07489 122 EDGADVITASLGGP---SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------- 188 (312)
T ss_pred hcCCCEEEeCCCcC---CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------
Confidence 99999999999987 3455577777888889999999999999986532 2233468899998721
Q ss_pred eCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 361 VNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceE
Q 003970 441 TELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520 (782)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 520 (782)
+.||++||+. +...||||+|||+++
T Consensus 189 -----------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i 213 (312)
T cd07489 189 -----------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNI 213 (312)
T ss_pred -----------------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCE
Confidence 4689999995 588999999999999
Q ss_pred EeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhccccCCCCCCccccCCCCC
Q 003970 521 LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH-PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMK 599 (782)
Q Consensus 521 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~ 599 (782)
+++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++....... ....
T Consensus 214 ~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~---~~~~ 279 (312)
T cd07489 214 LSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS---ALPD 279 (312)
T ss_pred EEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc---cccC
Confidence 999887521 58999999999999999999999999 99999999999999999865432110 1111
Q ss_pred cCCCCCccccccCccccCCCcee
Q 003970 600 VSDPFDIGAGHINPMKAMDPGLI 622 (782)
Q Consensus 600 ~~~~~~~G~G~vn~~~Al~~glv 622 (782)
.++...+|||+||+.+|++..-.
T Consensus 280 ~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 280 LAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred CCCHhhcCcceeeHHHHhcCCcc
Confidence 35667999999999999995433
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=391.25 Aligned_cols=293 Identities=37% Similarity=0.496 Sum_probs=217.9
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|||||+|||++||+|.+.. .+++++...+.|.....................
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG-----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC-----------------------CCCCceeeeeECccCCCCcccccccccccccCC
Confidence 899999999999999999997432 112333433433322111100000000001123
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEec
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISAS 293 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 293 (782)
..|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++...+ .+...++++||+|+++++++|||||
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Iin~S 126 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG---SGTTDVIIAAIEQAVDDGMDVINLS 126 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC---CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 456899999999999998644 22468999999999999998555 5888999999999999999999999
Q ss_pred ccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc--ccCCCceEEecccccCcccceeEEeCCccEEEeee
Q 003970 294 FGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV--QNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES 371 (782)
Q Consensus 294 lG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~ 371 (782)
||... ....+.+..++.++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 127 ~g~~~---~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------------ 185 (295)
T cd07474 127 LGSSV---NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------------ 185 (295)
T ss_pred CCCCC---CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC------------------
Confidence 99873 33456778888899999999999999998765554 33468999999854100
Q ss_pred eecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccccc
Q 003970 372 FISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIP 451 (782)
Q Consensus 372 ~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 451 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCC
Q 003970 452 TVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPT 531 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 531 (782)
.........|+++|+.. ....+||||+|||.+|++++....
T Consensus 186 -----------------------------------~~~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~~--- 226 (295)
T cd07474 186 -----------------------------------VAEADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGSG--- 226 (295)
T ss_pred -----------------------------------cCCCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCCC---
Confidence 00022334555555433 468899999999999999988731
Q ss_pred CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccccc
Q 003970 532 LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611 (782)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~v 611 (782)
..|..++|||||||+|||++|||+|++|.|++++||++|++||.+....+. ...++..+|+|+|
T Consensus 227 --------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~l 290 (295)
T cd07474 227 --------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGRV 290 (295)
T ss_pred --------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCccee
Confidence 278999999999999999999999999999999999999999998765331 1124568999999
Q ss_pred Ccccc
Q 003970 612 NPMKA 616 (782)
Q Consensus 612 n~~~A 616 (782)
|+.+|
T Consensus 291 ~~~~A 295 (295)
T cd07474 291 DALRA 295 (295)
T ss_pred ccccC
Confidence 99887
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=384.40 Aligned_cols=250 Identities=26% Similarity=0.240 Sum_probs=203.0
Q ss_pred cCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCC
Q 003970 127 TPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206 (782)
Q Consensus 127 ~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 206 (782)
+|..+++|+||+|||||+|||.+||+|++.. ..+.. .+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~-~~~~~---------------------------~~~~------------ 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGAN-LTPLF---------------------------TYAA------------ 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCc-ccccc---------------------------Cccc------------
Confidence 7999999999999999999999999997542 11100 0000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
......|..+||||||||++|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|
T Consensus 42 ---~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 42 ---AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQG 106 (267)
T ss_pred ---cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCC
Confidence 012345678999999999998752 13589999999999999986652 245789999999999999
Q ss_pred CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccE
Q 003970 287 VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366 (782)
Q Consensus 287 vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~ 366 (782)
++|||||||.... .......+..++.+|.++|+++|+||||+|.....++...|++|+|||+..
T Consensus 107 ~~VIN~S~G~~~~-~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------- 170 (267)
T cd07476 107 AHIINISGGRLTQ-TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------- 170 (267)
T ss_pred CCEEEecCCcCCC-CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------
Confidence 9999999997631 223345677888889999999999999999776666677899999998431
Q ss_pred EEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccc
Q 003970 367 IVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAE 446 (782)
Q Consensus 367 ~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 446 (782)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCC
Q 003970 447 VDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPP 526 (782)
Q Consensus 447 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 526 (782)
.+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 171 -------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~ 202 (267)
T cd07476 171 -------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG 202 (267)
T ss_pred -------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC
Confidence 22457899999863 379999999999999887
Q ss_pred CCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCCC
Q 003970 527 NTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN----WSPAAIRSALMTTAYTRDTS 588 (782)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----lsp~~Ik~~L~~TA~~~~~~ 588 (782)
+ .|..++|||||||||||++|||+|++|. ++|++||++|++||.++...
T Consensus 203 ~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 203 G-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred C-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 5 7999999999999999999999999887 99999999999999987643
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=388.43 Aligned_cols=272 Identities=26% Similarity=0.324 Sum_probs=191.5
Q ss_pred CCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccc----cCCCCCC----
Q 003970 135 DDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE----YGPLNAS---- 206 (782)
Q Consensus 135 ~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~----~~~~~~~---- 206 (782)
|+|+|||||||||++||+|++.....+-....+|....+.+|. +++.|+ .|...+... ..+.+..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~------dd~~g~-~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI------DDVNGW-NFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc------ccccCe-eccCCcccccccccCccccccccc
Confidence 6899999999999999999865311111111122222222222 112222 222211000 0000000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
-..+...+.+..+|||||||||+|...++. .+.||||+|+|+.+|++... .....++++||+||++.|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g----~~~~~~i~~Ai~~a~~~g 141 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNG----DERDKDIANAIRYAVDNG 141 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCC----CcCHHHHHHHHHHHHHCC
Confidence 011223455789999999999999864422 25899999999999998643 367789999999999999
Q ss_pred CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc-----------ccCCCceEEecccccCccc
Q 003970 287 VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV-----------QNVAPWSICVAASSIDRTF 355 (782)
Q Consensus 287 vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-----------~~~ap~vitVgAs~~d~~~ 355 (782)
++|||||||... ......+..++..|.++|+++|+||||+|...... +...+++|+|||+....
T Consensus 142 ~~IiN~S~G~~~---~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-- 216 (291)
T cd07483 142 AKVINMSFGKSF---SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-- 216 (291)
T ss_pred CcEEEeCCCCCC---CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--
Confidence 999999999763 22334566777888999999999999998542111 11235677777743210
Q ss_pred ceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEE
Q 003970 356 PTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLI 435 (782)
Q Consensus 356 ~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i 435 (782)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceee
Q 003970 436 FAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITA 515 (782)
Q Consensus 436 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 515 (782)
....++.||++|+. +|||+|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKK-------NVDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCC-------ceEEEe
Confidence 01246889999985 379999
Q ss_pred cCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 516 PGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 516 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999998765 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=373.27 Aligned_cols=238 Identities=27% Similarity=0.354 Sum_probs=191.8
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 137 V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
|+|||||||||.+||+|++.. +..+++. .....|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------------~~~~~~~-----------------~~~~~~ 34 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------------IARLFFA-----------------GPGAPA 34 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------------cccccCC-----------------CCCCCC
Confidence 789999999999999996432 0000000 013456
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
..+|||||||||+|+... ..||||+|+|+.+|++...+....++..++++||+||++.|++|||||||.
T Consensus 35 ~~~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~ 103 (239)
T cd05561 35 PSAHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAG 103 (239)
T ss_pred CCCCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 789999999999998532 169999999999999986532224778899999999999999999999997
Q ss_pred CCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecc
Q 003970 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIST 375 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~ 375 (782)
.. ...+..++.++.++|+++|+||||+|+.. ..++...+++|+|++++.
T Consensus 104 ~~------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------ 153 (239)
T cd05561 104 PP------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------ 153 (239)
T ss_pred CC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------
Confidence 52 34567778889999999999999999753 344555789999998431
Q ss_pred cceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEE
Q 003970 376 EVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRI 455 (782)
Q Consensus 376 ~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 455 (782)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCC
Q 003970 456 DIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535 (782)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 535 (782)
.+.++.||++|+. +||.|||++|+++.+.+
T Consensus 154 ----------------------------------~~~~~~~s~~g~~--------~di~ApG~~i~~~~~~~-------- 183 (239)
T cd05561 154 ----------------------------------RGRLYREANRGAH--------VDFAAPGVDVWVAAPGG-------- 183 (239)
T ss_pred ----------------------------------CCCccccCCCCCc--------ceEEccccceecccCCC--------
Confidence 2346789999987 49999999999987664
Q ss_pred CCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccc
Q 003970 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609 (782)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 609 (782)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++... ..+..||||
T Consensus 184 -----~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G~G 239 (239)
T cd05561 184 -----GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFGYG 239 (239)
T ss_pred -----CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcCCC
Confidence 799999999999999999999999999 99999999999999976543 355689988
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=373.81 Aligned_cols=247 Identities=30% Similarity=0.363 Sum_probs=194.9
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC-C
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS-A 214 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (782)
||+|||||||||++||+|.... ..++.++.+.+.|.+.. .. .
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~----------------------~~~~~~i~~~~~~~~~~---------------~~~~ 43 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH----------------------LFKNLRILGEYDFVDNS---------------NNTN 43 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc----------------------cccCCceeeeecCccCC---------------CCCC
Confidence 7999999999999999995322 12335566666665431 12 3
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecc
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 294 (782)
.|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... ......++.|++|+.+.+++||||||
T Consensus 44 ~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~ 112 (261)
T cd07493 44 YTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSL 112 (261)
T ss_pred CCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5788999999999999752 236899999999999987643321 24566789999999999999999999
Q ss_pred cCCCCCCC----------CccChHHHHHHhhhccCceEEEecCCCCCCC---CCcccCCCceEEecccccCcccceeEEe
Q 003970 295 GESPPLRP----------FFASNADIGSFNAMQHGVTVVFSGGNDGPEP---SLVQNVAPWSICVAASSIDRTFPTEIVV 361 (782)
Q Consensus 295 G~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~ap~vitVgAs~~d~~~~~~~~~ 361 (782)
|....... .....+..++..+.++|+++|+||||+|... ...+...+++|+|||...
T Consensus 113 G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------- 182 (261)
T cd07493 113 GYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------- 182 (261)
T ss_pred CcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------
Confidence 98742000 0113466777888999999999999999763 334445689999998431
Q ss_pred CCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 362 NSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEE
Q 003970 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVL 521 (782)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 521 (782)
.+.++.||++||+. ++++||||+|||.+|+
T Consensus 183 ------------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~ 212 (261)
T cd07493 183 ------------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIY 212 (261)
T ss_pred ------------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeE
Confidence 23568899999985 7899999999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 213 ~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 213 VINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 865443 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=370.09 Aligned_cols=264 Identities=29% Similarity=0.359 Sum_probs=201.1
Q ss_pred ccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCC
Q 003970 126 VTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNA 205 (782)
Q Consensus 126 ~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 205 (782)
++|..+++|+||+|+|||||||++||+|.+..... .+.. .++. ..+...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~--------------~~~~--~~~~-----~~~~~~---------- 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD--------------GYDP--AVNG-----YNFVPN---------- 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC--------------Cccc--ccCC-----cccccc----------
Confidence 37999999999999999999999999998652000 0000 0000 000000
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc
Q 003970 206 STNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD 285 (782)
Q Consensus 206 ~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 285 (782)
.........|..||||||||||+|+..+.....|+. .+.|+||+|+|+.+|++.... .+..+.++++|+||++.
T Consensus 50 -~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 123 (273)
T cd07485 50 -VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY---YVGDDAVAAAIVYAADN 123 (273)
T ss_pred -cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHc
Confidence 000123455788999999999999865433222222 346799999999999998765 57889999999999999
Q ss_pred CCcEEEecccCCCCCCCCccChHHHHHHhhhcc-------CceEEEecCCCCCCCCCcccCCCceEEecccccCccccee
Q 003970 286 GVDVISASFGESPPLRPFFASNADIGSFNAMQH-------GVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTE 358 (782)
Q Consensus 286 gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~ 358 (782)
|++|||||||... ...+...+..++..+.++ |+++|+||||+|......+...+++|+|++++.
T Consensus 124 g~~Vin~S~g~~~--~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------- 194 (273)
T cd07485 124 GAVILQNSWGGTG--GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------- 194 (273)
T ss_pred CCcEEEecCCCCC--ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-------
Confidence 9999999999874 233445566777777777 999999999999876666666789999998441
Q ss_pred EEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEec
Q 003970 359 IVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAE 438 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n 438 (782)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc
Q 003970 439 PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI 518 (782)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 518 (782)
.+.++.||++|+. +||+|||.
T Consensus 195 ---------------------------------------------------~~~~~~~S~~g~~--------~~i~apG~ 215 (273)
T cd07485 195 ---------------------------------------------------NDNKASFSNYGRW--------VDIAAPGV 215 (273)
T ss_pred ---------------------------------------------------CCCcCccccCCCc--------eEEEeCCC
Confidence 2345789999987 49999999
Q ss_pred -eEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 003970 519 -GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN-WSPAAIRSALMTT 581 (782)
Q Consensus 519 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-lsp~~Ik~~L~~T 581 (782)
.|+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 216 ~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 216 GTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 89988775421 11237899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=367.24 Aligned_cols=247 Identities=33% Similarity=0.373 Sum_probs=193.6
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|||||+|||++||+|.+.- .+ .+.+..... ..++.. ......
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~--~~---~~~~~~~~~---------------~~~~d~-------------~~~~~~ 47 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKY--RG---WGGGSADHD---------------YNWFDP-------------VGNTPL 47 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcc--cc---cCCCCcccc---------------cccccC-------------CCCCCC
Confidence 899999999999999999997541 00 000000000 000000 011235
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhh---------
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALH--------- 284 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~--------- 284 (782)
+.|..+|||||||||+|.... +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 48 ~~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 48 PYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG----GNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC----CcHHHHHHHHHHHHhccccccccc
Confidence 668899999999999987532 2238999999999999998764 778899999999975
Q ss_pred ---cCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC---cccCCCceEEecccccCccccee
Q 003970 285 ---DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL---VQNVAPWSICVAASSIDRTFPTE 358 (782)
Q Consensus 285 ---~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgAs~~d~~~~~~ 358 (782)
.+++|||||||... . ....+..++..+.++|++||+||||+|..... .+...+++|+|||.+.
T Consensus 115 ~~~~~~~Iin~S~G~~~--~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------- 183 (264)
T cd07481 115 DPDLAPDVINNSWGGPS--G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------- 183 (264)
T ss_pred ccccCCeEEEeCCCcCC--C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------
Confidence 78999999999874 1 23455666777889999999999999865433 3445689999998431
Q ss_pred EEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEec
Q 003970 359 IVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAE 438 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n 438 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc
Q 003970 439 PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI 518 (782)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 518 (782)
.+.++.||++||.. .+++||||+|||.
T Consensus 184 ---------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~ 210 (264)
T cd07481 184 ---------------------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGV 210 (264)
T ss_pred ---------------------------------------------------CCCCccccCCCCCC--CCCcCceEEECCC
Confidence 33568999999995 5899999999999
Q ss_pred eEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 003970 519 GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN--WSPAAIRSALMTTAY 583 (782)
Q Consensus 519 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--lsp~~Ik~~L~~TA~ 583 (782)
+|+++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 211 ~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 211 NIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999875 7899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=375.46 Aligned_cols=223 Identities=29% Similarity=0.290 Sum_probs=166.8
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecc
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 294 (782)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++.... ..+...++++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~g-s~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLG-SMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCC-CccchHHHHHHHHHHHHcCCCEEEecC
Confidence 46789999999999998532 234689999999999999865431 123456799999999999999999999
Q ss_pred cCCCCCCCCccChHHHHHHh-hhccCceEEEecCCCCCCCCCcccC---CCceEEecccccCcccceeEEeCCccEEEee
Q 003970 295 GESPPLRPFFASNADIGSFN-AMQHGVTVVFSGGNDGPEPSLVQNV---APWSICVAASSIDRTFPTEIVVNSDFSIVGE 370 (782)
Q Consensus 295 G~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~~---ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~ 370 (782)
|... .......+..++.+ +.++|+++|+||||+|+...++..+ .+.+|+|||+.........
T Consensus 253 G~~~--~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 253 GEAT--HWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred CcCC--CCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 9874 11111223333433 4578999999999999887776544 5799999995421100000
Q ss_pred eeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccc
Q 003970 371 SFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDII 450 (782)
Q Consensus 371 ~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 450 (782)
T Consensus 319 -------------------------------------------------------------------------------- 318 (412)
T cd04857 319 -------------------------------------------------------------------------------- 318 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCC
Q 003970 451 PTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPP 530 (782)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 530 (782)
|.. .....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 319 ---------------y~~-----------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~--- 361 (412)
T cd04857 319 ---------------YSL-----------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT--- 361 (412)
T ss_pred ---------------ccc-----------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC---
Confidence 000 011145689999999995 7999999999999998752211
Q ss_pred CCCCCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 003970 531 TLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----AHPNWSPAAIRSALMTTAYTR 585 (782)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~Ik~~L~~TA~~~ 585 (782)
...|..|+|||||||||||++|||++ .+|+|+|.+||.+|++||+++
T Consensus 362 --------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 --------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred --------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 12789999999999999999999985 478999999999999999853
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=361.37 Aligned_cols=258 Identities=31% Similarity=0.463 Sum_probs=203.4
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|+|||+|||++||+|.+.. . ..|. +... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~-~----~~~~------------------------~~~~------------~~~~~~ 39 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRI-I----RFAD------------------------FVNT------------VNGRTT 39 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccc-c----cccc------------------------cccc------------ccCCCC
Confidence 899999999999999999997543 0 0000 0000 001235
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc----CCcE
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD----GVDV 289 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~----gvdV 289 (782)
..|..+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ ....+++++||+|+++. +++|
T Consensus 40 ~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 40 PYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG---SGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC---CccHHHHHHHHHHHHhhccccCceE
Confidence 5677899999999999986432 23468999999999999998776 47788999999999998 9999
Q ss_pred EEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC--cccCCCceEEecccccCcccceeEEeCCccEE
Q 003970 290 ISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL--VQNVAPWSICVAASSIDRTFPTEIVVNSDFSI 367 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~ 367 (782)
||+|||.... .....+.+..++.++.++|+++|+||||+|....+ .+...+++|+|||...+..
T Consensus 110 in~S~g~~~~-~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------- 175 (264)
T cd07487 110 VNLSLGAPPD-PSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------- 175 (264)
T ss_pred EEeccCCCCC-CCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------
Confidence 9999998852 24466778888899999999999999999977653 3444689999998543210
Q ss_pred EeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccc
Q 003970 368 VGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEV 447 (782)
Q Consensus 368 ~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 447 (782)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCC
Q 003970 448 DIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPN 527 (782)
Q Consensus 448 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 527 (782)
....++.||++||+. ++++||||+|||++|+++.+..
T Consensus 176 -----------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~ 212 (264)
T cd07487 176 -----------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPG 212 (264)
T ss_pred -----------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccc
Confidence 012468899999995 7999999999999999986653
Q ss_pred CCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 528 TPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
... .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 213 ~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 213 GNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 111 1122347899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=362.44 Aligned_cols=255 Identities=25% Similarity=0.287 Sum_probs=183.4
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++..+|+++++|+||+|+||||||+..|| |...+ +.+.. .+..+
T Consensus 9 ~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~--------~~~~~--------------------~~~~~------- 52 (298)
T cd07494 9 NATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRG--------YQVRV--------------------VLAPG------- 52 (298)
T ss_pred ChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCC--------cccee--------------------ecCCC-------
Confidence 67789999999999999999999999998 75332 11100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
......|+.|||||||+++ .||||+|+|+.+|++. ...+++++||+||
T Consensus 53 -------~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~-------~~~~~~~~ai~~a 100 (298)
T cd07494 53 -------ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGG-------PDLVNSVGAFKKA 100 (298)
T ss_pred -------CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccC-------CCcHHHHHHHHHH
Confidence 1124567889999998764 5899999999999976 3456799999999
Q ss_pred hhcCCcEEEecccCCCCCC--C------CccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcc
Q 003970 283 LHDGVDVISASFGESPPLR--P------FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRT 354 (782)
Q Consensus 283 ~~~gvdVIn~SlG~~~~~~--~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~ 354 (782)
++++++|||||||...... . .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..
T Consensus 101 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~ 177 (298)
T cd07494 101 ISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED 177 (298)
T ss_pred HhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC
Confidence 9999999999999863100 0 11234677788889999999999999974 45667899999999653321
Q ss_pred cceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEE
Q 003970 355 FPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGL 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~ 434 (782)
- .
T Consensus 178 g--------------------------------------------------~---------------------------- 179 (298)
T cd07494 178 G--------------------------------------------------A---------------------------- 179 (298)
T ss_pred C--------------------------------------------------c----------------------------
Confidence 0 0
Q ss_pred EEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccce-
Q 003970 435 IFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDI- 513 (782)
Q Consensus 435 i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI- 513 (782)
.......+.|++ .. .+++.|||+
T Consensus 180 ----------------------------------------------------~~~~~~~~~~~s---~~-~~g~~~pd~~ 203 (298)
T cd07494 180 ----------------------------------------------------RRASSYASGFRS---KI-YPGRQVPDVC 203 (298)
T ss_pred ----------------------------------------------------ccccccccCccc---cc-CCCCccCccc
Confidence 000000111222 11 356677877
Q ss_pred ---------------eecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003970 514 ---------------TAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSAL 578 (782)
Q Consensus 514 ---------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L 578 (782)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|++++||.+|
T Consensus 204 ~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l 278 (298)
T cd07494 204 GLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278 (298)
T ss_pred cccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4799998765532100 01122379999999999999999999999999999999999999
Q ss_pred HhccccCCC
Q 003970 579 MTTAYTRDT 587 (782)
Q Consensus 579 ~~TA~~~~~ 587 (782)
++||+++..
T Consensus 279 ~~ta~~~~~ 287 (298)
T cd07494 279 NKTARDVTK 287 (298)
T ss_pred HHhCcccCC
Confidence 999997653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=355.64 Aligned_cols=243 Identities=31% Similarity=0.369 Sum_probs=201.7
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
+++.+|..+ +|+||+|+|||+||+++||+|.+.. +...+.+.+
T Consensus 17 ~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~----------------------------~~~~~~~~~-------- 59 (260)
T cd07484 17 GAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVK----------------------------FVLGYDFVD-------- 59 (260)
T ss_pred ChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCC----------------------------cccceeccC--------
Confidence 677899988 9999999999999999999984221 111111211
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
....+.|..+|||||||||++...++ ..+.|+||+|+|+.+|+++..+ .+...+++++|+++
T Consensus 60 -------~~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a 121 (260)
T cd07484 60 -------NDSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG---SGSLADIANGIRYA 121 (260)
T ss_pred -------CCCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC---CcCHHHHHHHHHHH
Confidence 11235678899999999999875332 2358999999999999998765 57889999999999
Q ss_pred hhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeC
Q 003970 283 LHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVN 362 (782)
Q Consensus 283 ~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~ 362 (782)
++.+++|||+|||... ....+..++..+.++|++||+||||+|......+...+++|+||+.+.
T Consensus 122 ~~~~~~iin~S~g~~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------- 185 (260)
T cd07484 122 ADKGAKVINLSLGGGL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ----------- 185 (260)
T ss_pred HHCCCeEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-----------
Confidence 9999999999999873 345677777888899999999999999877777777899999998442
Q ss_pred CccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc
Q 003970 363 SDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE 442 (782)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 442 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEe
Q 003970 443 LIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLA 522 (782)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 522 (782)
.+..+.||++|+. +|++|||.+|++
T Consensus 186 -----------------------------------------------~~~~~~~s~~g~~--------~~~~apG~~i~~ 210 (260)
T cd07484 186 -----------------------------------------------DDKRASFSNYGKW--------VDVSAPGGGILS 210 (260)
T ss_pred -----------------------------------------------CCCcCCcCCCCCC--------ceEEeCCCCcEe
Confidence 2345789999987 499999999999
Q ss_pred ecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 003970 523 AWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR 585 (782)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~ 585 (782)
..+.. .|..++|||||||+|||++||++|++| |++.+||++|++||+++
T Consensus 211 ~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 211 TTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 88764 899999999999999999999999999 99999999999999864
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=363.29 Aligned_cols=236 Identities=24% Similarity=0.191 Sum_probs=168.2
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCC-CCCCCHHHHHHHHHHHhhcC---CcE
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDS-DGKCTEADILAAFDDALHDG---VDV 289 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~-~~~~~~~~i~~ai~~a~~~g---vdV 289 (782)
..|..||||||||||++.... .....|+||+|+|+.+|++...+. .......++++||+|+++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 568999999999999976432 123579999999999999987641 11367788999999999853 489
Q ss_pred EEecccCCCCCCCCccChHHHHHH-hhhccCceEEEecCCCCCCCCCc------------ccCCCceEEecccccCcccc
Q 003970 290 ISASFGESPPLRPFFASNADIGSF-NAMQHGVTVVFSGGNDGPEPSLV------------QNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~~------------~~~ap~vitVgAs~~d~~~~ 356 (782)
||||||............+..++. .+.++|++||+||||+|...... +..++++|+|||++.+....
T Consensus 106 iN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~ 185 (291)
T cd04847 106 FNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDIT 185 (291)
T ss_pred EEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCC
Confidence 999999974201111123444443 35699999999999999765432 23367999999976432110
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
..
T Consensus 186 ~~------------------------------------------------------------------------------ 187 (291)
T cd04847 186 DR------------------------------------------------------------------------------ 187 (291)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
+.. +.......+.||+|||.. ++.+||||+||
T Consensus 188 ---------------------------------s~~-------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~ap 219 (291)
T cd04847 188 ---------------------------------ARY-------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAF 219 (291)
T ss_pred ---------------------------------ccc-------------cccccccCCCccccCCCC--CCCcCCcEEee
Confidence 000 000011223499999995 79999999999
Q ss_pred CceEEeecCCCCCCC-----CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 517 GIGVLAAWPPNTPPT-----LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 517 G~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
|++|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999988654321100 0001122348999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=353.47 Aligned_cols=233 Identities=30% Similarity=0.413 Sum_probs=192.3
Q ss_pred cCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCC
Q 003970 127 TPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206 (782)
Q Consensus 127 ~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 206 (782)
.|..+++|+||+|+|||+||+++||+|.+.. ...+.+..
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~-----------------------------~~~~~~~~------------ 55 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA-----------------------------IWGADFVG------------ 55 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe-----------------------------eeeeecCC------------
Confidence 6777899999999999999999999997432 11111111
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
.....|..+|||||||||+++. .||||+|+|+.+|+++..+ ....+.++++++++++..
T Consensus 56 ----~~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~---~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 56 ----GDPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG---SGTLSGIIAGLEWVANDA 114 (255)
T ss_pred ----CCCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHhcc
Confidence 0125678899999999999863 6999999999999998775 477899999999999874
Q ss_pred -----CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEE
Q 003970 287 -----VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIV 360 (782)
Q Consensus 287 -----vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~ 360 (782)
++|||+|||... ...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.
T Consensus 115 ~~~~~~~iin~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------- 179 (255)
T cd04077 115 TKRGKPAVANMSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------- 179 (255)
T ss_pred cccCCCeEEEeCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------
Confidence 899999999872 45667777889999999999999999765 334445789999998542
Q ss_pred eCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 361 VNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceE
Q 003970 441 TELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520 (782)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 520 (782)
.+..+.||++||.. ||+|||.+|
T Consensus 180 -------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i 202 (255)
T cd04077 180 -------------------------------------------------DDARASFSNYGSCV--------DIFAPGVDI 202 (255)
T ss_pred -------------------------------------------------CCCccCcccCCCCC--------cEEeCCCCe
Confidence 22368899999974 999999999
Q ss_pred EeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 003970 521 LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYT 584 (782)
Q Consensus 521 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~ 584 (782)
.++..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 203 ~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 203 LSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99887421 278999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=351.02 Aligned_cols=253 Identities=29% Similarity=0.340 Sum_probs=186.0
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCC
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSAR 215 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (782)
||+|||||+|||++||+|.+.. ...+.|.... ........
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------------~~~~~~~~~~-----------~~~~~~~~ 40 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------------AQWADFDENR-----------RISATEVF 40 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------------CCceeccCCC-----------CCCCCCCC
Confidence 7999999999999999997542 1111111100 00123455
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEeccc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFG 295 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 295 (782)
|..+|||||||||+|+.. ++...||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||
T Consensus 41 d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~----~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 41 DAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG----GSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC----CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 788999999999999864 22357999999999999998764 78899999999999999999999999
Q ss_pred CCCCCCCCccChHHHHHHhhhc-cCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeec
Q 003970 296 ESPPLRPFFASNADIGSFNAMQ-HGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIS 374 (782)
Q Consensus 296 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~ 374 (782)
... .. .+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 108 ~~~--~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s--------------- 168 (254)
T cd07490 108 GTY--YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS--------------- 168 (254)
T ss_pred cCC--CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc---------------
Confidence 874 11 4555555544443 699999999999987555566679999999965332100000
Q ss_pred ccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEE
Q 003970 375 TEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVR 454 (782)
Q Consensus 375 ~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 454 (782)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCC
Q 003970 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLP 534 (782)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 534 (782)
..........+.+|.. .....|||++|||.+|+++....
T Consensus 169 ---------------------------------~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~------- 207 (254)
T cd07490 169 ---------------------------------SFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA------- 207 (254)
T ss_pred ---------------------------------CCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC-------
Confidence 0000122233344443 34678999999999999865321
Q ss_pred CCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 535 SDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 208 --~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 --NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred --CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11237999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=355.31 Aligned_cols=207 Identities=29% Similarity=0.333 Sum_probs=166.9
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh---------
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL--------- 283 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~--------- 283 (782)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ .+.+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~----~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG----GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC----CcHHHHHHHHHHHhccCcCCCcc
Confidence 45578899999999999986432 2358999999999999998775 58889999999998
Q ss_pred -hcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEEe
Q 003970 284 -HDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIVV 361 (782)
Q Consensus 284 -~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~~ 361 (782)
.++++|||||||... . ....+..++..+.++|++||+||||+|... ...+...+++|+|||++.
T Consensus 134 ~~~~~~Iin~S~G~~~---~-~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 199 (285)
T cd07496 134 NPNPAKVINLSLGGDG---A-CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------- 199 (285)
T ss_pred cCCCCeEEEeCCCCCC---C-CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------
Confidence 457899999999874 1 145677788889999999999999999765 445556789999998542
Q ss_pred CCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 362 NSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEE
Q 003970 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVL 521 (782)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 521 (782)
.+.++.||++|+.. ||+|||++|.
T Consensus 200 ------------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~ 223 (285)
T cd07496 200 ------------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCA 223 (285)
T ss_pred ------------------------------------------------CCCcccccCCCCCC--------CEEeCCCCcc
Confidence 23568899999974 9999999999
Q ss_pred eecCCCCCCC--CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 522 AAWPPNTPPT--LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 522 sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 224 SDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8876542210 00112223478999999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=353.89 Aligned_cols=331 Identities=22% Similarity=0.341 Sum_probs=249.0
Q ss_pred CCCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCch------hhcc------------ceEEEee---eeeeeEEEEeC
Q 003970 25 TASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEE------DAKR------------SLLYGYK---YSFSGFSAKLN 83 (782)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~------------~i~~~y~---~~~ng~s~~l~ 83 (782)
.....|||.|++.. .+.-...|.++++....... ++-. .+.+.|. ..|+|+.-..+
T Consensus 78 ~~~~~YiV~f~~~~---~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDA---SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred ccccceEEEeCCCc---cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 45678999999542 24445566667666543221 1100 0222332 26788888889
Q ss_pred HHHHHHHhcCcCeEEEEecceeeccc--------ccccccccccccC------CCCccCCCCCCCCCcEEEEeccccCCC
Q 003970 84 SSQAASLAEMEEVISIFESQVLKLHT--------TRSWDFMGLILDN------TGEVTPVQLAYGDDIVVGIFDTGVWPE 149 (782)
Q Consensus 84 ~~~~~~L~~~p~V~~V~~~~~~~~~~--------~~s~~~~gl~~~~------~~~~~~~~~~~G~gV~VgVIDtGId~~ 149 (782)
.+-+..++++|-++.++++...+... ...|....+...- .....++ -..|+||...|+||||+.+
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DTGVni~ 233 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDTGVNIE 233 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEeccccccc
Confidence 99999999999999999988765432 2333222221110 0111222 3379999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhc
Q 003970 150 SESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAA 229 (782)
Q Consensus 150 Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaa 229 (782)
||+|.+.. .| |.| +. ......|++||||||||+|+
T Consensus 234 H~dFegRa-------~w-Ga~-----i~--------------------------------~~~~~~D~nGHGTH~AG~I~ 268 (501)
T KOG1153|consen 234 HPDFEGRA-------IW-GAT-----IP--------------------------------PKDGDEDCNGHGTHVAGLIG 268 (501)
T ss_pred ccccccce-------ec-ccc-----cC--------------------------------CCCcccccCCCcceeeeeee
Confidence 99997543 12 111 00 01244689999999999999
Q ss_pred cccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc---------CCcEEEecccCCCCC
Q 003970 230 GSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD---------GVDVISASFGESPPL 300 (782)
Q Consensus 230 g~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~SlG~~~~~ 300 (782)
++. .|||.+++|+++||+.++| .+..+++++++|++++. +..|.|||+|+..
T Consensus 269 sKt--------------~GvAK~s~lvaVKVl~~dG---sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~-- 329 (501)
T KOG1153|consen 269 SKT--------------FGVAKNSNLVAVKVLRSDG---SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR-- 329 (501)
T ss_pred ccc--------------cccccccceEEEEEeccCC---cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc--
Confidence 985 7999999999999999998 79999999999999986 3569999999983
Q ss_pred CCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeEEeCCccEEEeeeeeccccee
Q 003970 301 RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKA 379 (782)
Q Consensus 301 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~ 379 (782)
.-.+..|+..|.+.||++++||||+..+.+. .+..+..+|||||++.
T Consensus 330 ----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------------- 377 (501)
T KOG1153|consen 330 ----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------------- 377 (501)
T ss_pred ----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------------
Confidence 4578889999999999999999999876544 4456789999999652
Q ss_pred eEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhh
Q 003970 380 KLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQ 459 (782)
Q Consensus 380 ~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~ 459 (782)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCc
Q 003970 460 GTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRS 539 (782)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 539 (782)
.+.++.||+||++. ||.|||++|+|+|.+...
T Consensus 378 ------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~---------- 409 (501)
T KOG1153|consen 378 ------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN---------- 409 (501)
T ss_pred ------------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc----------
Confidence 45789999999995 999999999999998643
Q ss_pred cceeeeccccchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhcccc
Q 003970 540 VKWNFQSGTSMSCPHVSGVVALIKSAHPN---------WSPAAIRSALMTTAYT 584 (782)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------lsp~~Ik~~L~~TA~~ 584 (782)
...++||||||+|||||++|..++++|. .+|.++|..+..-..+
T Consensus 410 -at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 410 -ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred -chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 6678999999999999999999999983 3888998888776654
|
|
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=356.60 Aligned_cols=279 Identities=28% Similarity=0.318 Sum_probs=201.2
Q ss_pred CCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCC
Q 003970 130 QLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNR 209 (782)
Q Consensus 130 ~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 209 (782)
++++|+||+|||||+|||++||+|.+... .+. ...++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~-------------~~~-----~~~~~~~~~~~~~~~--------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF-------------NKT-----NLFHRKIVRYDSLSD--------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc-------------CcC-----ccCcccEEEeeccCC---------------
Confidence 58899999999999999999999976531 001 112344443332211
Q ss_pred CCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcE
Q 003970 210 EYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDV 289 (782)
Q Consensus 210 ~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdV 289 (782)
...|..+|||||||||+|+..+... ...+.||||+|+|+.+|++...+. .....++..+++++.+.+++|
T Consensus 49 ---~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V 118 (293)
T cd04842 49 ---TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARI 118 (293)
T ss_pred ---CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEE
Confidence 2227899999999999998754321 113589999999999999887642 356677899999999999999
Q ss_pred EEecccCCCCCCCCccChHHHHHHhhh-c-cCceEEEecCCCCCCCC---CcccCCCceEEecccccCcccceeEEeCCc
Q 003970 290 ISASFGESPPLRPFFASNADIGSFNAM-Q-HGVTVVFSGGNDGPEPS---LVQNVAPWSICVAASSIDRTFPTEIVVNSD 364 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~d~~~~~~~~~~~~ 364 (782)
||||||... .. .......++.++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 119 in~S~G~~~--~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------- 188 (293)
T cd04842 119 SSNSWGSPV--NN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------- 188 (293)
T ss_pred EeccCCCCC--cc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------
Confidence 999999884 21 1233333333332 3 89999999999997654 44455799999999764331000
Q ss_pred cEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccc
Q 003970 365 FSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELI 444 (782)
Q Consensus 365 ~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 444 (782)
..|..
T Consensus 189 --------------------------~~~~~------------------------------------------------- 193 (293)
T cd04842 189 --------------------------EGGLG------------------------------------------------- 193 (293)
T ss_pred --------------------------ccccc-------------------------------------------------
Confidence 00000
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeec
Q 003970 445 AEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAW 524 (782)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 524 (782)
.......++.||++||+. ++++||||+|||++|+++.
T Consensus 194 -----------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~ 230 (293)
T cd04842 194 -----------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSAR 230 (293)
T ss_pred -----------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEecc
Confidence 011245689999999985 6899999999999999997
Q ss_pred CCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 003970 525 PPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH-----P---NWSPAAIRSALMTTAY 583 (782)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~lsp~~Ik~~L~~TA~ 583 (782)
+.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 231 ~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 231 SGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 65310 011223478999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=355.15 Aligned_cols=267 Identities=28% Similarity=0.326 Sum_probs=185.1
Q ss_pred CCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCC
Q 003970 129 VQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTN 208 (782)
Q Consensus 129 ~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 208 (782)
..+++|+||+|||||+|||.+||+|.+.. . ....|.+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~-~----------------------------~~~~~~~-------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD-I----------------------------TTKSFVG-------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc-c----------------------------cCcccCC--------------
Confidence 45789999999999999999999997543 0 0011111
Q ss_pred CCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCc
Q 003970 209 REYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVD 288 (782)
Q Consensus 209 ~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvd 288 (782)
...+.|..||||||||||+|+..+ +...||||+|+|+.+|++.... ......+++||+||++.|++
T Consensus 39 --~~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~ 104 (297)
T cd07480 39 --GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGAD 104 (297)
T ss_pred --CCCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCC
Confidence 112467899999999999998643 2247999999999999998765 47778899999999999999
Q ss_pred EEEecccCCCC--------CCCCccChHHHHHHhh---------------hccCceEEEecCCCCCCCCCccc---C--C
Q 003970 289 VISASFGESPP--------LRPFFASNADIGSFNA---------------MQHGVTVVFSGGNDGPEPSLVQN---V--A 340 (782)
Q Consensus 289 VIn~SlG~~~~--------~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~---~--a 340 (782)
|||+|||.... ........+......+ .++|++||+||||+|........ + .
T Consensus 105 Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~ 184 (297)
T cd07480 105 VISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAAC 184 (297)
T ss_pred EEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcccc
Confidence 99999998631 0001111222222223 68999999999999864332211 1 2
Q ss_pred CceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHH
Q 003970 341 PWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420 (782)
Q Consensus 341 p~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~ 420 (782)
++++.|++...
T Consensus 185 ~~~~~V~~V~~--------------------------------------------------------------------- 195 (297)
T cd07480 185 PSAMGVAAVGA--------------------------------------------------------------------- 195 (297)
T ss_pred ccccEEEEECC---------------------------------------------------------------------
Confidence 33344443211
Q ss_pred HHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCC
Q 003970 421 EAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRG 500 (782)
Q Consensus 421 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 500 (782)
.+....|+++.
T Consensus 196 ---------------------------------------------------------------------~~~~~~~~~~~ 206 (297)
T cd07480 196 ---------------------------------------------------------------------LGRTGNFSAVA 206 (297)
T ss_pred ---------------------------------------------------------------------CCCCCCccccC
Confidence 01112223332
Q ss_pred CCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 003970 501 PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMT 580 (782)
Q Consensus 501 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~ 580 (782)
+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 22 234789999999999998765 8999999999999999999999999999999888888874
Q ss_pred ccccCCCCCCccccCCCCCcCCCCCccccccCcc
Q 003970 581 TAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPM 614 (782)
Q Consensus 581 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~ 614 (782)
........ .........++|+|++++.
T Consensus 270 ~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 270 RLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 33221100 1111235668999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=345.17 Aligned_cols=241 Identities=32% Similarity=0.385 Sum_probs=188.7
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 137 V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
|+|||||+|||++||+|++.. +. +.+ +.+.. ....+.|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---~~-----------------------~~~-~~~~~---------------~~~~~~~ 38 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---KL-----------------------VPG-WNFVS---------------NNDPTSD 38 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---Cc-----------------------cCC-ccccC---------------CCCCCCC
Confidence 789999999999999997531 00 000 00000 1113567
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
..+|||||||||+|+..++ ..+.||||+|+|+.+|++...+ .+..+++.++++|+++.+++|||||||.
T Consensus 39 ~~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Vin~S~g~ 107 (242)
T cd07498 39 IDGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG---YAYWSDIAQAITWAADNGADVISNSWGG 107 (242)
T ss_pred CCCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHCCCeEEEeccCC
Confidence 8999999999999986322 2368999999999999998765 4788999999999999999999999998
Q ss_pred CCCCCCCccChHHHHHHhhhc-cCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecc
Q 003970 297 SPPLRPFFASNADIGSFNAMQ-HGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIST 375 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~ 375 (782)
... .......+..++.++.+ +|+++|+||||+|......+...+++|+|||++.
T Consensus 108 ~~~-~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------ 162 (242)
T cd07498 108 SDS-TESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------ 162 (242)
T ss_pred CCC-CchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC------------------------
Confidence 742 22334566677777888 9999999999999776666667899999998542
Q ss_pred cceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEE
Q 003970 376 EVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRI 455 (782)
Q Consensus 376 ~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 455 (782)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCC
Q 003970 456 DIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535 (782)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 535 (782)
.+.+++||++||. +|++|||.++.......... .
T Consensus 163 ----------------------------------~~~~~~~s~~g~~--------~~~~apG~~~~~~~~~~~~~----~ 196 (242)
T cd07498 163 ----------------------------------NDARASYSNYGNY--------VDLVAPGVGIWTTGTGRGSA----G 196 (242)
T ss_pred ----------------------------------CCCccCcCCCCCC--------eEEEeCcCCcccCCcccccc----c
Confidence 2346899999998 49999999998875442111 1
Q ss_pred CCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
+.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 197 ~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 197 DYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 1223478899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=346.31 Aligned_cols=253 Identities=27% Similarity=0.372 Sum_probs=192.0
Q ss_pred CCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCC
Q 003970 135 DDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSA 214 (782)
Q Consensus 135 ~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (782)
+||+|||||||||++||+|.+..........+.+....+..|. +...+.++. ....++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~----------------~~~~~~ 59 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV------DDIYGWNFV----------------NNDNDP 59 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc------cCCCccccc----------------CCCCCC
Confidence 6999999999999999999865311110001111111111110 000111100 122456
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecc
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 294 (782)
.|..+|||||||||+|...++. .+.||||+|+|+.+|++...+ .++..+++++|+++++.+++|||+||
T Consensus 60 ~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~vin~S~ 128 (259)
T cd07473 60 MDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG---SGTTSDAIKAIDYAVDMGAKIINNSW 128 (259)
T ss_pred CCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 7889999999999999864322 358999999999999998776 58899999999999999999999999
Q ss_pred cCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC---CCccc--CCCceEEecccccCcccceeEEeCCccEEEe
Q 003970 295 GESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP---SLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFSIVG 369 (782)
Q Consensus 295 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g 369 (782)
|... ....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 129 G~~~-----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------ 185 (259)
T cd07473 129 GGGG-----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------ 185 (259)
T ss_pred CCCC-----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------
Confidence 9884 245677788889999999999999998652 22332 2478999998432
Q ss_pred eeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccc
Q 003970 370 ESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDI 449 (782)
Q Consensus 370 ~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 449 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCC
Q 003970 450 IPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTP 529 (782)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 529 (782)
.+.++.||++||.. ||+.|||.++++..+..
T Consensus 186 ----------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~-- 216 (259)
T cd07473 186 ----------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSPGG-- 216 (259)
T ss_pred ----------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccCCC--
Confidence 23456799999873 79999999999976654
Q ss_pred CCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 530 PTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 217 -----------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 -----------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -----------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=348.71 Aligned_cols=248 Identities=19% Similarity=0.120 Sum_probs=177.6
Q ss_pred CCCccCCCCC-CCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 123 TGEVTPVQLA-YGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 123 ~~~~~~~~~~-~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
++.++|+... .|+||+|+|||+|||.+||||.+.. ... .
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~-~~~-------------------------------~-------- 42 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNG-ITL-------------------------------I-------- 42 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccc-ccc-------------------------------c--------
Confidence 5678898744 4899999999999999999997542 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
....+.|+.+|||||||||+|..+ + ..+.||||+|+|+.+|++. .++++++|.+
T Consensus 43 --------~~~~~~d~~gHGT~VAGiIaa~~n-~--------~G~~GvAp~a~l~~i~v~~---------~~~~~~ai~~ 96 (277)
T cd04843 43 --------SGLTDQADSDHGTAVLGIIVAKDN-G--------IGVTGIAHGAQAAVVSSTR---------VSNTADAILD 96 (277)
T ss_pred --------CCCCCCCCCCCcchhheeeeeecC-C--------CceeeeccCCEEEEEEecC---------CCCHHHHHHH
Confidence 001245788999999999998631 1 1258999999999999975 2345566666
Q ss_pred Hhh----cCCcEEEecccCCCCCCC----CccChHHHHHHhhhccCceEEEecCCCCCCCCCcc----------c---CC
Q 003970 282 ALH----DGVDVISASFGESPPLRP----FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQ----------N---VA 340 (782)
Q Consensus 282 a~~----~gvdVIn~SlG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------~---~a 340 (782)
|++ .++.+||||||....... .....+..++.+|.++|+++|+||||++....... . ..
T Consensus 97 A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (277)
T cd04843 97 AADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRD 176 (277)
T ss_pred HHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCC
Confidence 666 356789999998731010 11233456777888999999999999986421111 1 13
Q ss_pred CceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHH
Q 003970 341 PWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420 (782)
Q Consensus 341 p~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~ 420 (782)
+++|+|||++.+.
T Consensus 177 ~~vI~VgA~~~~~------------------------------------------------------------------- 189 (277)
T cd04843 177 SGAIMVGAGSSTT------------------------------------------------------------------- 189 (277)
T ss_pred CCeEEEEeccCCC-------------------------------------------------------------------
Confidence 5788888753210
Q ss_pred HHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCC
Q 003970 421 EAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRG 500 (782)
Q Consensus 421 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 500 (782)
...++.||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~fSn~G 200 (277)
T cd04843 190 ---------------------------------------------------------------------GHTRLAFSNYG 200 (277)
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 11268999999
Q ss_pred CCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHH----h-CCCCCHHHHH
Q 003970 501 PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----A-HPNWSPAAIR 575 (782)
Q Consensus 501 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~lsp~~Ik 575 (782)
+. +||.|||++|+++.+..... ........|..++|||||||||||++|||++ + +|+|+|+|||
T Consensus 201 ~~--------vdi~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~ 269 (277)
T cd04843 201 SR--------VDVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMR 269 (277)
T ss_pred Cc--------cceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 97 49999999999998764321 0111112457899999999999999999975 3 4999999999
Q ss_pred HHHHhccc
Q 003970 576 SALMTTAY 583 (782)
Q Consensus 576 ~~L~~TA~ 583 (782)
++|+.|+.
T Consensus 270 ~~L~~t~~ 277 (277)
T cd04843 270 ELLTATGT 277 (277)
T ss_pred HHHHhcCC
Confidence 99999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=335.16 Aligned_cols=227 Identities=32% Similarity=0.443 Sum_probs=186.4
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCC
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSAR 215 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (782)
||+|||||+||+++||+|.+.. +....|... ......
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-----------------------------~~~~~~~~~--------------~~~~~~ 37 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-----------------------------VGGANFTGD--------------DNNDYQ 37 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-----------------------------cCcccccCC--------------CCCCCC
Confidence 7999999999999999997542 111111110 002455
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEeccc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFG 295 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 295 (782)
|..+|||||||||++..... .+.|+||+|+|+.+|+++..+ .....+++++++++++.+++|||+|||
T Consensus 38 ~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~---~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 38 DGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDG---SGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 78899999999999975321 458999999999999998776 467789999999999999999999999
Q ss_pred CCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc--ccCCCceEEecccccCcccceeEEeCCccEEEeeeee
Q 003970 296 ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV--QNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFI 373 (782)
Q Consensus 296 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~ 373 (782)
... ....+..++..+.++|+++|+||||++...... +...+++|+||+++.
T Consensus 106 ~~~-----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------- 158 (229)
T cd07477 106 GPS-----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------- 158 (229)
T ss_pred cCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------
Confidence 874 234566677788899999999999999776554 566799999998542
Q ss_pred cccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEE
Q 003970 374 STEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTV 453 (782)
Q Consensus 374 ~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 453 (782)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCC
Q 003970 454 RIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLL 533 (782)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 533 (782)
.+.++.||++|+. +|++|||.+|+++++.+
T Consensus 159 ------------------------------------~~~~~~~s~~g~~--------~~~~apg~~i~~~~~~~------ 188 (229)
T cd07477 159 ------------------------------------NNNRASFSSTGPE--------VELAAPGVDILSTYPNN------ 188 (229)
T ss_pred ------------------------------------CCCcCCccCCCCC--------ceEEeCCCCeEEecCCC------
Confidence 2345689999987 59999999999998875
Q ss_pred CCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 534 PSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=335.31 Aligned_cols=162 Identities=21% Similarity=0.192 Sum_probs=118.4
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
+++|+|||||||||++||+|++.- ..+.+|. ...... ......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-------------~~~~~~~----------------~~~~~~--------~~~~~~ 44 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-------------IGGKSFS----------------PYEGDG--------NKVSPY 44 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-------------ccCCCCC----------------CCCCCc--------ccCCCC
Confidence 689999999999999999997431 0011111 110000 001112
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCC---CCCCHHHHHHHHHHHhhcCCcEE
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSD---GKCTEADILAAFDDALHDGVDVI 290 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~---~~~~~~~i~~ai~~a~~~gvdVI 290 (782)
..|..||||||||||+ |+||+|+|+.+|+++..+.. ..+....+++||+||+++|+|||
T Consensus 45 ~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadII 106 (247)
T cd07491 45 YVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDII 106 (247)
T ss_pred CCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEE
Confidence 3468899999999996 57999999999999865421 13567889999999999999999
Q ss_pred EecccCCCCC-CCCccChHHHHHHhhhccCceEEEecCCCCCCCC-Ccc--cCCCceEEecccc
Q 003970 291 SASFGESPPL-RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS-LVQ--NVAPWSICVAASS 350 (782)
Q Consensus 291 n~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~--~~ap~vitVgAs~ 350 (782)
|||||...+. .......+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++
T Consensus 107 n~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 107 SMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred EeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9999987410 0112566788888999999999999999997654 333 3468999999954
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=343.30 Aligned_cols=210 Identities=29% Similarity=0.318 Sum_probs=156.1
Q ss_pred CCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEE
Q 003970 212 RSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVIS 291 (782)
Q Consensus 212 ~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 291 (782)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|++|++++++|||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~~~vin 111 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG---SAESSWIIKAIIDAADDGVDVIN 111 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHHCCCCEEE
Confidence 3556789999999999998642 25999999999999998776 35889999999999999999999
Q ss_pred ecccCCCCCCC------CccChHHHHHHhhhccCceEEEecCCCCCCCCC----------------------cccCCCce
Q 003970 292 ASFGESPPLRP------FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL----------------------VQNVAPWS 343 (782)
Q Consensus 292 ~SlG~~~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~ap~v 343 (782)
+|||....... .....+..++..+.++|++||+||||+|..... .+...+++
T Consensus 112 ~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v 191 (294)
T cd07482 112 LSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNV 191 (294)
T ss_pred eCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCce
Confidence 99998632010 111335566667889999999999999864311 11223566
Q ss_pred EEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHH
Q 003970 344 ICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAE 423 (782)
Q Consensus 344 itVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~ 423 (782)
|+|||++.
T Consensus 192 i~Vga~~~------------------------------------------------------------------------ 199 (294)
T cd07482 192 ITVSATDN------------------------------------------------------------------------ 199 (294)
T ss_pred EEEEeeCC------------------------------------------------------------------------
Confidence 66665321
Q ss_pred HHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCC
Q 003970 424 AAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSS 503 (782)
Q Consensus 424 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 503 (782)
.+.++.||++|+..
T Consensus 200 ------------------------------------------------------------------~~~~~~~S~~g~~~ 213 (294)
T cd07482 200 ------------------------------------------------------------------NGNLSSFSNYGNSR 213 (294)
T ss_pred ------------------------------------------------------------------CCCcCccccCCCCc
Confidence 34567899999874
Q ss_pred CCCCCcccceeecCceEEeecCCCCCC---CC------CCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCH-HH
Q 003970 504 ISPDILKPDITAPGIGVLAAWPPNTPP---TL------LPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP-AA 573 (782)
Q Consensus 504 ~~~~~~KPDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp-~~ 573 (782)
+|++|||+++....+..... .. .........|..++|||||||+|||++|||+|++|.|++ .|
T Consensus 214 -------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~ 286 (294)
T cd07482 214 -------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDE 286 (294)
T ss_pred -------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHH
Confidence 69999999885322211100 00 001123457899999999999999999999999999999 99
Q ss_pred HHHHHHhc
Q 003970 574 IRSALMTT 581 (782)
Q Consensus 574 Ik~~L~~T 581 (782)
||++|++|
T Consensus 287 v~~~L~~T 294 (294)
T cd07482 287 AIRILYNT 294 (294)
T ss_pred HHHHHhhC
Confidence 99999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=347.35 Aligned_cols=276 Identities=33% Similarity=0.445 Sum_probs=206.1
Q ss_pred EEEEeccccCCCCCCCC-CCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 138 VVGIFDTGVWPESESFQ-EEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 138 ~VgVIDtGId~~Hp~f~-d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
+|||||||||++||+|. ..- ...++.+.+.|.+.. .......|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~------------~~~~~~~~ 44 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN------------PNPSPSDD 44 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB------------STTTSSST
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC------------CCcCcccc
Confidence 69999999999999997 221 011222333333321 01235567
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh-hcCCcEEEeccc
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL-HDGVDVISASFG 295 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~SlG 295 (782)
..+|||||||||+|.. . .. .....|+||+|+|+.+|++...+ ....+++++|++++ +++++|||+|||
T Consensus 45 ~~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~----~~~~~~~~ai~~~~~~~~~~Vin~S~G 113 (282)
T PF00082_consen 45 DNGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG----GTSSDLIEAIEYAVKNDGVDVINLSFG 113 (282)
T ss_dssp SSSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS----EEHHHHHHHHHHHHHHTTSSEEEECEE
T ss_pred CCCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc----cccccccchhhhhhhccCCcccccccc
Confidence 8899999999999986 2 11 22358999999999999977653 67888999999999 899999999999
Q ss_pred CCCC-CCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cc--cCCCceEEecccccCcccceeEEeCCccEEEeee
Q 003970 296 ESPP-LRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQ--NVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES 371 (782)
Q Consensus 296 ~~~~-~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~--~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~ 371 (782)
.... ........+..+...+.++|+++|+||||+|+.... +. ...+++|+||+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~-------------------- 173 (282)
T PF00082_consen 114 SNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN-------------------- 173 (282)
T ss_dssp BEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET--------------------
T ss_pred ccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc--------------------
Confidence 8310 011223334556668889999999999999876553 33 33588899998431
Q ss_pred eecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccccc
Q 003970 372 FISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIP 451 (782)
Q Consensus 372 ~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 451 (782)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCC
Q 003970 452 TVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPT 531 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 531 (782)
.+.++.||++|+.. .++++||||+|||.+|+++++....
T Consensus 174 --------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 174 --------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp --------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES--
T ss_pred --------------------------------------cccccccccccccc-ccccccccccccccccccccccccc--
Confidence 22458899997654 3789999999999999998876410
Q ss_pred CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccccc
Q 003970 532 LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611 (782)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~v 611 (782)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++...+ ....+..||||+|
T Consensus 213 --------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~i 275 (282)
T PF00082_consen 213 --------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLI 275 (282)
T ss_dssp --------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE
T ss_pred --------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChh
Confidence 25889999999999999999999999999999999999999999876211 1235567899999
Q ss_pred CccccCC
Q 003970 612 NPMKAMD 618 (782)
Q Consensus 612 n~~~Al~ 618 (782)
|+.+|++
T Consensus 276 n~~~a~~ 282 (282)
T PF00082_consen 276 NAEKALN 282 (282)
T ss_dssp -HHHHHH
T ss_pred CHHHHhC
Confidence 9999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=325.45 Aligned_cols=222 Identities=22% Similarity=0.227 Sum_probs=173.7
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCC
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSAR 215 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (782)
||+|||||||||++||+|.+.... +..|. + ..+ ........
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-------------~~~~~----~-----------~~~-----------~~~~~~~~ 41 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-------------GEVTI----D-----------LEI-----------IVVSAEGG 41 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-------------ccccc----c-----------ccc-----------ccCCCCCC
Confidence 799999999999999999754300 00000 0 000 00123456
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEeccc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFG 295 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 295 (782)
|..||||||||||++. +|+++|+.+|+++..+ .+..+++++||+|+++++++|||||||
T Consensus 42 d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 42 DKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG---RCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 7899999999999854 5999999999998776 588899999999999999999999999
Q ss_pred CCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecc
Q 003970 296 ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIST 375 (782)
Q Consensus 296 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~ 375 (782)
... ......+..++.++.++|+++|+||||++..... +...+.+|+|++...++
T Consensus 101 ~~~---~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~---------------------- 154 (222)
T cd07492 101 GPG---DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD---------------------- 154 (222)
T ss_pred CCC---CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC----------------------
Confidence 874 2233556677788888999999999999865332 45568899999743211
Q ss_pred cceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEE
Q 003970 376 EVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRI 455 (782)
Q Consensus 376 ~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 455 (782)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCC
Q 003970 456 DIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535 (782)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 535 (782)
.. +.+++ ++|+.|||.+|+++.+.+
T Consensus 155 ------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------- 179 (222)
T cd07492 155 ------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------- 179 (222)
T ss_pred ------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC--------
Confidence 00 11133 369999999999998774
Q ss_pred CCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 -----~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 -----RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -----CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=343.72 Aligned_cols=252 Identities=21% Similarity=0.187 Sum_probs=180.9
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++..+|..+++|+||+|+|||||||++||+|.+.. ... ..+.|....
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~-~~~--------------------------~~~~~~~~~----- 73 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNY-DPE--------------------------ASYDFNDND----- 73 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcc-ccc--------------------------ccccccCCC-----
Confidence 367889999999999999999999999999997543 000 001111100
Q ss_pred CCCCCCCCCCCCC--CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHH
Q 003970 202 PLNASTNREYRSA--RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAF 279 (782)
Q Consensus 202 ~~~~~~~~~~~~~--~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai 279 (782)
....+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... ........++
T Consensus 74 --------~~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~ 132 (297)
T cd04059 74 --------PDPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-----VTDVVEAESL 132 (297)
T ss_pred --------CCCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-----cccHHHHHHH
Confidence 00112 2788999999999999863321 24899999999999998754 3334555666
Q ss_pred HHHhhcCCcEEEecccCCCCCC--CCccChHHHHHHhhhc-----cCceEEEecCCCCCCCCC--c--ccCCCceEEecc
Q 003970 280 DDALHDGVDVISASFGESPPLR--PFFASNADIGSFNAMQ-----HGVTVVFSGGNDGPEPSL--V--QNVAPWSICVAA 348 (782)
Q Consensus 280 ~~a~~~gvdVIn~SlG~~~~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~ap~vitVgA 348 (782)
.++.+ .++|||+|||...... .........++.++.. +|++||+||||+|..... . ....+++|+|||
T Consensus 133 ~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga 211 (297)
T cd04059 133 GLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSA 211 (297)
T ss_pred hcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEe
Confidence 66554 4599999999874201 1112223334444432 799999999999973222 1 123588999998
Q ss_pred cccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHH
Q 003970 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKK 428 (782)
Q Consensus 349 s~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~ 428 (782)
++.
T Consensus 212 ~~~----------------------------------------------------------------------------- 214 (297)
T cd04059 212 VTA----------------------------------------------------------------------------- 214 (297)
T ss_pred eCC-----------------------------------------------------------------------------
Confidence 542
Q ss_pred cCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCC
Q 003970 429 ANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDI 508 (782)
Q Consensus 429 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 508 (782)
.+.++.||++|+..
T Consensus 215 -------------------------------------------------------------~g~~~~~s~~g~~~----- 228 (297)
T cd04059 215 -------------------------------------------------------------NGVRASYSEVGSSV----- 228 (297)
T ss_pred -------------------------------------------------------------CCCCcCCCCCCCcE-----
Confidence 23467899999984
Q ss_pred cccceeecCce-------EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 509 LKPDITAPGIG-------VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 509 ~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++|
T Consensus 229 ---~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~T 295 (297)
T cd04059 229 ---LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALT 295 (297)
T ss_pred ---EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHh
Confidence 89999987 66665542 01267889999999999999999999999999999999999999
Q ss_pred cc
Q 003970 582 AY 583 (782)
Q Consensus 582 A~ 583 (782)
|+
T Consensus 296 A~ 297 (297)
T cd04059 296 AR 297 (297)
T ss_pred cC
Confidence 85
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=324.72 Aligned_cols=246 Identities=30% Similarity=0.373 Sum_probs=186.4
Q ss_pred CCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCC
Q 003970 133 YGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYR 212 (782)
Q Consensus 133 ~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 212 (782)
+|+||+|+|||+||+++||+|.+... .. . . +.... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~-~~-------~-----~----------------~~~~~-----------~~~~~ 40 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVS-EA-------S-----Y----------------YVAVN-----------DAGYA 40 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccc-cc-------c-----c----------------ccccc-----------cccCC
Confidence 69999999999999999999986530 00 0 0 00000 00012
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEe
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISA 292 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~ 292 (782)
...|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||+
T Consensus 41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~ 109 (267)
T cd04848 41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS--TFSDADIAAAYDFLAASGVRIINN 109 (267)
T ss_pred CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc--ccchHHHHHHHHHHHhCCCeEEEc
Confidence 4457889999999999998643 34689999999999999987531 267788999999999999999999
Q ss_pred cccCCCCCCC----------CccChHHHHHHhhhccCceEEEecCCCCCCCCCcc---------cCCCceEEecccccCc
Q 003970 293 SFGESPPLRP----------FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQ---------NVAPWSICVAASSIDR 353 (782)
Q Consensus 293 SlG~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~ap~vitVgAs~~d~ 353 (782)
|||....... .....+......+.++|+++|+||||++....... ...+++|+||+.+.+.
T Consensus 110 S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~ 189 (267)
T cd04848 110 SWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG 189 (267)
T ss_pred cCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC
Confidence 9998852110 13455666777888999999999999986543332 2357899999855321
Q ss_pred ccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceE
Q 003970 354 TFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASG 433 (782)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g 433 (782)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCcccc--ccCCCCCCCCCCCccc
Q 003970 434 LIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAY--FSSRGPSSISPDILKP 511 (782)
Q Consensus 434 ~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~~KP 511 (782)
.... ||++|+.. -.+
T Consensus 190 ----------------------------------------------------------~~~~~~~s~~~~~~-----~~~ 206 (267)
T cd04848 190 ----------------------------------------------------------TIASYSYSNRCGVA-----ANW 206 (267)
T ss_pred ----------------------------------------------------------Ccccccccccchhh-----hhh
Confidence 1223 48888653 235
Q ss_pred ceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 512 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 207 ~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 207 CLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 79999999999887411 17889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=323.35 Aligned_cols=358 Identities=23% Similarity=0.286 Sum_probs=270.3
Q ss_pred CceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhh------ccceEEEeeeeeeeEEEEeCH-----HHHHHHhcCcC
Q 003970 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDA------KRSLLYGYKYSFSGFSAKLNS-----SQAASLAEMEE 95 (782)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~i~~~y~~~~ng~s~~l~~-----~~~~~L~~~p~ 95 (782)
+..|||+|+... ..+.|+..+++.+...+-. +.....+|-.-|.-+-++-.. -++++|..+|.
T Consensus 49 e~EyIv~F~~y~------~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYK------PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEecccc------cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 356999999752 2355666776665432211 111234566666665554332 35899999999
Q ss_pred eEEEEecceeeccc------------c----------ccc-------------ccc----cccccCCCCccCCCCCCCCC
Q 003970 96 VISIFESQVLKLHT------------T----------RSW-------------DFM----GLILDNTGEVTPVQLAYGDD 136 (782)
Q Consensus 96 V~~V~~~~~~~~~~------------~----------~s~-------------~~~----gl~~~~~~~~~~~~~~~G~g 136 (782)
|+.|.|-+.+.... + +++ ... ++.+..+++-+|..|++|++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 99999987653210 0 000 000 11111467889999999999
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 137 V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
|+|||.|||+..+||.|+.-- . .-.|. | ...-.|
T Consensus 203 VkvAiFDTGl~~~HPHFrnvK--E--RTNWT---------------N---------------------------E~tLdD 236 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNVK--E--RTNWT---------------N---------------------------EDTLDD 236 (1033)
T ss_pred eEEEEeecccccCCccccchh--h--hcCCc---------------C---------------------------cccccc
Confidence 999999999999999997432 0 00111 0 123446
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
.-||||.|||+|||.. ...|.||+++|+++|||.+.. -.+.+.+++|+.||+...+||+|+|+|+
T Consensus 237 ~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidvLNLSIGG 301 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDVLNLSIGG 301 (1033)
T ss_pred CcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcceEeeccCC
Confidence 8899999999999874 247999999999999999877 5889999999999999999999999999
Q ss_pred CCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCC--ceEEecccccCcccceeEEeCCccEEEeeeeec
Q 003970 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAP--WSICVAASSIDRTFPTEIVVNSDFSIVGESFIS 374 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~ 374 (782)
+. +.+.++..-+.......|++|.|+||+||-.++..+++. .||.||..
T Consensus 302 PD----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------------- 352 (1033)
T KOG4266|consen 302 PD----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------------- 352 (1033)
T ss_pred cc----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------------
Confidence 74 678888888888889999999999999999999998864 46666641
Q ss_pred ccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEE
Q 003970 375 TEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVR 454 (782)
Q Consensus 375 ~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 454 (782)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC----CCCCcccceeecCceEEeecCCCCCC
Q 003970 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI----SPDILKPDITAPGIGVLAAWPPNTPP 530 (782)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~~~ 530 (782)
+..+.++.|||||-+.+ .-|++||||++-|.+|....-..
T Consensus 353 ---------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~--- 396 (1033)
T KOG4266|consen 353 ---------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST--- 396 (1033)
T ss_pred ---------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc---
Confidence 22567899999997643 34899999999999987765543
Q ss_pred CCCCCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCc
Q 003970 531 TLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----AHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDI 606 (782)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 606 (782)
+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++... .-++|
T Consensus 397 ----------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-------------NMfEQ 453 (1033)
T KOG4266|consen 397 ----------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-------------NMFEQ 453 (1033)
T ss_pred ----------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------chhhc
Confidence 678899999999999999999977 234479999999999999988643 34689
Q ss_pred cccccCccccCCC
Q 003970 607 GAGHINPMKAMDP 619 (782)
Q Consensus 607 G~G~vn~~~Al~~ 619 (782)
|+|++|+.++.+-
T Consensus 454 GaGkldLL~syqi 466 (1033)
T KOG4266|consen 454 GAGKLDLLESYQI 466 (1033)
T ss_pred cCcchhHHHHHHH
Confidence 9999999888763
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=304.59 Aligned_cols=242 Identities=29% Similarity=0.336 Sum_probs=184.0
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
..-|||||||||+|+.... ....||||+|+|+.+++.+..-+ ...+...+.+|+..++++.+||||||+|-
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLg-sMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLG-SMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCcccc-ccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 3569999999999997543 24589999999999999765431 13456679999999999999999999998
Q ss_pred CCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccC---CCceEEecccccCcccceeEEeCCccEEEeeeee
Q 003970 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNV---APWSICVAASSIDRTFPTEIVVNSDFSIVGESFI 373 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~ 373 (782)
... .+.....++..-..+.++|+++|+||||+||...|++.| ...+|.|||.-.....
T Consensus 380 ~a~-~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------ 440 (1304)
T KOG1114|consen 380 DAH-LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------ 440 (1304)
T ss_pred cCC-CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH------------------
Confidence 842 222334455555556699999999999999998888876 3579999984321100
Q ss_pred cccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEE
Q 003970 374 STEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTV 453 (782)
Q Consensus 374 ~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 453 (782)
T Consensus 441 -------------------------------------------------------------------------------- 440 (1304)
T KOG1114|consen 441 -------------------------------------------------------------------------------- 440 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCC
Q 003970 454 RIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLL 533 (782)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 533 (782)
+.. |-- -.+.......+|||||+. ||.+-..|.|||+.|-+- |...
T Consensus 441 -------~a~--y~~-----------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----- 486 (1304)
T KOG1114|consen 441 -------QAE--YSV-----------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----- 486 (1304)
T ss_pred -------Hhh--hhh-----------------hccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh-----
Confidence 000 000 011134578999999995 899999999999988553 2211
Q ss_pred CCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccc
Q 003970 534 PSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609 (782)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 609 (782)
-..-..|+|||||+|+++|.+|||++. +-.|||..||.+|++||.++++. .+|.||.|
T Consensus 487 -----lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~faqG~G 548 (1304)
T KOG1114|consen 487 -----LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFAQGQG 548 (1304)
T ss_pred -----hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhccCcc
Confidence 115568999999999999999999664 67899999999999999987642 57899999
Q ss_pred ccCccccCC
Q 003970 610 HINPMKAMD 618 (782)
Q Consensus 610 ~vn~~~Al~ 618 (782)
++++++|.+
T Consensus 549 mlqVdkAyE 557 (1304)
T KOG1114|consen 549 MLQVDKAYE 557 (1304)
T ss_pred eeehhHHHH
Confidence 999999987
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=283.48 Aligned_cols=197 Identities=26% Similarity=0.260 Sum_probs=140.2
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH--hhcCCcEE
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA--LHDGVDVI 290 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a--~~~gvdVI 290 (782)
...|.++|||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+.+++||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-------~~~~~~~~~i~~~~~~~~gv~VI 89 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-------KSNNGQWQECLEAQQNGNNVKII 89 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-------CCCCccHHHHHHHHHhcCCceEE
Confidence 3457899999999999987 3567999998765522 1223456777787 66799999
Q ss_pred EecccCCCCCCC-----CccChHHHHHHhhhcc-CceEEEecCCCCCCCC---Cc--ccCCCceEEecccccCcccceeE
Q 003970 291 SASFGESPPLRP-----FFASNADIGSFNAMQH-GVTVVFSGGNDGPEPS---LV--QNVAPWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 291 n~SlG~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~--~~~ap~vitVgAs~~d~~~~~~~ 359 (782)
|||||.... .. ...+.+..++..+.++ |+++|+||||+|.... .+ +..++++|+|||++....
T Consensus 90 NmS~G~~~~-~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----- 163 (247)
T cd07488 90 NHSYGEGLK-RDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----- 163 (247)
T ss_pred EeCCccCCC-CCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----
Confidence 999998742 11 1223455666666555 9999999999997532 22 233688999999642210
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
....+.||+++-....++..||||+|||++
T Consensus 164 --------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~ 193 (247)
T cd07488 164 --------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSN 193 (247)
T ss_pred --------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeee
Confidence 011245565432221467889999999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHhcc
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP------AAIRSALMTTA 582 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp------~~Ik~~L~~TA 582 (782)
|++ +.+ .|..++|||||||||||++|||++++|.+.+ -++|.+|+.|+
T Consensus 194 i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 194 YNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 998 332 6889999999999999999999999877664 55677776653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=269.90 Aligned_cols=197 Identities=37% Similarity=0.446 Sum_probs=157.9
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh-hcCCcEEE
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL-HDGVDVIS 291 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn 291 (782)
...+..+||||||++|++...... ..|+||+++|+.+|+..... ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 445688999999999999864322 27999999999999988765 467889999999999 89999999
Q ss_pred ecccCCCCCCCCccChHHHHHHhhhcc-CceEEEecCCCCCCCC---CcccCCCceEEecccccCcccceeEEeCCccEE
Q 003970 292 ASFGESPPLRPFFASNADIGSFNAMQH-GVTVVFSGGNDGPEPS---LVQNVAPWSICVAASSIDRTFPTEIVVNSDFSI 367 (782)
Q Consensus 292 ~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~ 367 (782)
+|||... ......+...+.++.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 107 ~S~g~~~---~~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------- 169 (241)
T cd00306 107 LSLGGPG---SPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------- 169 (241)
T ss_pred eCCCCCC---CCCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------
Confidence 9999884 11345566677777777 9999999999997665 3555679999999865321
Q ss_pred EeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccc
Q 003970 368 VGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEV 447 (782)
Q Consensus 368 ~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 447 (782)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCcc-ccccCCCCCCCCCCCcccceeecCceEEeecCC
Q 003970 448 DIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPP 526 (782)
Q Consensus 448 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 526 (782)
.. ..++++|+ |||+.|||.++......
T Consensus 170 --------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~ 197 (241)
T cd00306 170 --------------------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT 197 (241)
T ss_pred --------------------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC
Confidence 11 13444444 58999999998875111
Q ss_pred CCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 527 NTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 -----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 -----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 12388999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=234.57 Aligned_cols=253 Identities=32% Similarity=0.412 Sum_probs=189.3
Q ss_pred CCCccCCC--CCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccccccc
Q 003970 123 TGEVTPVQ--LAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEY 200 (782)
Q Consensus 123 ~~~~~~~~--~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~ 200 (782)
.....|.. +.+|+|++|+|||+||+..||+|.+..... ..|.+.
T Consensus 128 ~~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~-----------------------------~~~~~~----- 173 (508)
T COG1404 128 SVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG-----------------------------GDFVDG----- 173 (508)
T ss_pred ccccccccccCCCCCCeEEEEeccCCCCCChhhhcccccc-----------------------------cccccC-----
Confidence 34567777 899999999999999999999997653000 011110
Q ss_pred CCCCCCCCCCCC-CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHH
Q 003970 201 GPLNASTNREYR-SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAF 279 (782)
Q Consensus 201 ~~~~~~~~~~~~-~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai 279 (782)
... ...|..+|||||++++++.... ......|+||+++++.+|++.... +....++++++|
T Consensus 174 ---------~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~--g~~~~~~~~~~i 235 (508)
T COG1404 174 ---------DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGG--GSGELSDVAEGI 235 (508)
T ss_pred ---------CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCC--CcccHHHHHHHH
Confidence 011 2468899999999999984211 112358999999999999998763 157788889999
Q ss_pred HHHhhcC--CcEEEecccCCCCCCCCccChHHHHHHhhhccC-ceEEEecCCCCCCCCC----cccCC--CceEEecccc
Q 003970 280 DDALHDG--VDVISASFGESPPLRPFFASNADIGSFNAMQHG-VTVVFSGGNDGPEPSL----VQNVA--PWSICVAASS 350 (782)
Q Consensus 280 ~~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgAs~ 350 (782)
+++++.+ +++||||+|... .......+..++..++..| +++|+++||.|..... .+... +.+++|++..
T Consensus 236 ~~~~~~~~~~~~in~s~g~~~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~ 313 (508)
T COG1404 236 EGAANLGGPADVINLSLGGSL--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD 313 (508)
T ss_pred HHHHhcCCCCcEEEecCCCCc--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC
Confidence 9999999 999999999851 2234456667777777777 9999999999866421 11111 3566666632
Q ss_pred cCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcC
Q 003970 351 IDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKAN 430 (782)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~G 430 (782)
.
T Consensus 314 ~------------------------------------------------------------------------------- 314 (508)
T COG1404 314 L------------------------------------------------------------------------------- 314 (508)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcc
Q 003970 431 ASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILK 510 (782)
Q Consensus 431 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 510 (782)
.+.++.||++|+.. .
T Consensus 315 -----------------------------------------------------------~~~~~~~s~~g~~~------~ 329 (508)
T COG1404 315 -----------------------------------------------------------SDTVASFSNDGSPT------G 329 (508)
T ss_pred -----------------------------------------------------------CCccccccccCCCC------C
Confidence 24568899999751 2
Q ss_pred cceeecCceEEe-----ecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccc
Q 003970 511 PDITAPGIGVLA-----AWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP-NWSPAAIRSALMTTAYT 584 (782)
Q Consensus 511 PDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~lsp~~Ik~~L~~TA~~ 584 (782)
.+++|||.+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 330 ~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 330 VDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 499999999988 444431 1499999999999999999999999999 89999999998888873
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=201.93 Aligned_cols=299 Identities=17% Similarity=0.193 Sum_probs=182.5
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++..+|..|++|++|+++|+|.||||-|||++.+- ++ ...++|..+.
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~ny-------------------na--------easydfssnd------ 195 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNY-------------------NA--------EASYDFSSND------ 195 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhccc-------------------Cc--------eeecccccCC------
Confidence 67889999999999999999999999999996331 10 1122232221
Q ss_pred CCCCCCCCCCCCC---C-CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHH
Q 003970 203 LNASTNREYRSAR---D-FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278 (782)
Q Consensus 203 ~~~~~~~~~~~~~---D-~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~a 278 (782)
+++.|+ | .+.|||.|||-+++...++. +| .|||.+.++..+|+++ ..+..|+++|
T Consensus 196 -------pfpyprytddwfnshgtrcagev~aardngi--cg------vgvaydskvagirmld------qpymtdliea 254 (629)
T KOG3526|consen 196 -------PFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLD------QPYMTDLIEA 254 (629)
T ss_pred -------CCCCCcccchhhhccCccccceeeeeccCCc--ee------eeeeeccccceeeecC------Cchhhhhhhh
Confidence 112222 2 58999999999888776544 33 6999999999999997 3667777776
Q ss_pred HHHHhh-cCCcEEEecccCCCCCCCCccC---hHHHHHHhhh-----ccCceEEEecCCCCCCCCCcc---cCCCceEEe
Q 003970 279 FDDALH-DGVDVISASFGESPPLRPFFAS---NADIGSFNAM-----QHGVTVVFSGGNDGPEPSLVQ---NVAPWSICV 346 (782)
Q Consensus 279 i~~a~~-~gvdVIn~SlG~~~~~~~~~~~---~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~~~---~~ap~vitV 346 (782)
-..--+ ..++|.+-|||.... ....+. ....|+.+-+ ..|-+.|.|.|..|.+...-. ..+-|.|++
T Consensus 255 nsmghep~kihiysaswgptdd-gktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisi 333 (629)
T KOG3526|consen 255 NSMGHEPSKIHIYSASWGPTDD-GKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISI 333 (629)
T ss_pred cccCCCCceEEEEecccCcCCC-CcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEe
Confidence 433222 356899999998742 111222 2222333322 356789999999885422111 123466666
Q ss_pred cccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHH
Q 003970 347 AASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAA 426 (782)
Q Consensus 347 gAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~ 426 (782)
-+.-.|.+ ++..+..|.
T Consensus 334 nsaindg~-------------------------------nahydescs-------------------------------- 350 (629)
T KOG3526|consen 334 NSAINDGE-------------------------------NAHYDESCS-------------------------------- 350 (629)
T ss_pred ehhhcCCc-------------------------------cccccchhh--------------------------------
Confidence 54221110 000111121
Q ss_pred HHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCC
Q 003970 427 KKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISP 506 (782)
Q Consensus 427 ~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 506 (782)
....+.||+-|.++
T Consensus 351 ---------------------------------------------------------------stlastfsng~rnp--- 364 (629)
T KOG3526|consen 351 ---------------------------------------------------------------STLASTFSNGGRNP--- 364 (629)
T ss_pred ---------------------------------------------------------------HHHHHHhhcCCcCC---
Confidence 11235677766542
Q ss_pred CCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 003970 507 DILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 507 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~ 586 (782)
+- |+. .+ +-+..+....||||.|+|-.||+.||.++++|.|+..+++.+-.-|.++..
T Consensus 365 -----et---gva--tt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrns 422 (629)
T KOG3526|consen 365 -----ET---GVA--TT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNS 422 (629)
T ss_pred -----Cc---cee--ee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccch
Confidence 21 111 00 111226678899999999999999999999999999999999888877632
Q ss_pred CC-C-CccccC-CCCCcCCCCCccccccCccccCCCceeecCCc
Q 003970 587 TS-H-DSILAG-GSMKVSDPFDIGAGHINPMKAMDPGLIYDLKP 627 (782)
Q Consensus 587 ~~-g-~~~~~~-~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~ 627 (782)
-- + ..+... .....--+.-||+|.+|+.+-+.....+...+
T Consensus 423 lfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvp 466 (629)
T KOG3526|consen 423 LFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVP 466 (629)
T ss_pred hhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCC
Confidence 11 1 011110 11122244569999999877665444444443
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-17 Score=176.72 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=79.2
Q ss_pred cceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc---CCcEEEecccCCCCC-CCCccChHHHHHHhhhccC
Q 003970 244 GIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD---GVDVISASFGESPPL-RPFFASNADIGSFNAMQHG 319 (782)
Q Consensus 244 g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~-~~~~~~~~~~a~~~a~~~G 319 (782)
..+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||..... ...+...+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 356899999999999997632 35677888888887 999999999987410 0012345667778888999
Q ss_pred ceEEEecCCCCCCCCC-----------cccCCCceEEecccccCc
Q 003970 320 VTVVFSGGNDGPEPSL-----------VQNVAPWSICVAASSIDR 353 (782)
Q Consensus 320 i~vV~AAGN~G~~~~~-----------~~~~ap~vitVgAs~~d~ 353 (782)
|+||+|+||+|..... .+...|||++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999999976532 344579999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.2e-11 Score=109.38 Aligned_cols=117 Identities=23% Similarity=0.391 Sum_probs=94.6
Q ss_pred EEeCCccEEEeeeeecccc-eeeEEEccc---cccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEE
Q 003970 359 IVVNSDFSIVGESFISTEV-KAKLVEAFT---YFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGL 434 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~-~~~lv~~~~---~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~ 434 (782)
++++|++.+.|+++++... .+++++... ......|.+......+++|||++|+++.| ..+.+|..+++++||.|+
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~-~~~~~k~~~~~~~GA~gv 80 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGN-TSRVAKGDAVKAAGGAGM 80 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCC-ccHHHHHHHHHHcCCcEE
Confidence 6789999999999998775 578876333 12447899888888999999999999987 248899999999999999
Q ss_pred EEecCCC---ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEE
Q 003970 435 IFAEPMT---ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQ 477 (782)
Q Consensus 435 i~~n~~~---~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~ 477 (782)
|++|+.. ........+|++.|+.++|..|++|++ ++.+++++
T Consensus 81 I~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~-~~~~~~~~ 125 (126)
T cd02120 81 ILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN-STSNPTAT 125 (126)
T ss_pred EEEecCCCCceecccccccceEEECHHHHHHHHHHHH-cCCCccee
Confidence 9999865 222234689999999999999999999 55555443
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=111.86 Aligned_cols=110 Identities=30% Similarity=0.316 Sum_probs=87.3
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc---cc-cccccccEEE
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE---LI-AEVDIIPTVR 454 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~---~~-~~~~~~p~~~ 454 (782)
.++++.+. |...++...+++|||+||+|+.|. +.+|..+++++||.++|++|+... .. .....+|++.
T Consensus 28 ~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~c~--~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~ 99 (143)
T cd02133 28 YELVDAGL------GTPEDFEGKDVKGKIALIQRGEIT--FVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVF 99 (143)
T ss_pred EEEEEccC------CchhccCCCCccceEEEEECCCCC--HHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEE
Confidence 67777654 555566677899999999999875 999999999999999999998751 11 1135789999
Q ss_pred EehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCC
Q 003970 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPS 502 (782)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 502 (782)
|+..+|..|.+|++ + .++|.+..+.. ..+++.++.||||||+
T Consensus 100 Is~~dG~~L~~~l~-~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 100 ISKEDGEALKAALE-S----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred ecHHHHHHHHHHHh-C----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 99999999999998 4 45555554444 4567889999999997
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-09 Score=89.76 Aligned_cols=78 Identities=31% Similarity=0.434 Sum_probs=55.6
Q ss_pred eEEEEeCCCCCCCCchhhHHHHHHHHHHhCCc----hhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecce
Q 003970 29 VYIVYLGHNRHCDPNLISKSHLQLLSSVFASE----EDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQV 104 (782)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~ 104 (782)
+|||.|++... .......|.+++.+++.+. .....++.+.|+..||||+++++++++++|+++|+|++|+||+.
T Consensus 1 ~YIV~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDAS--AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTST--HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCC--cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999998732 2223455666666443321 23456799999999999999999999999999999999999999
Q ss_pred eecc
Q 003970 105 LKLH 108 (782)
Q Consensus 105 ~~~~ 108 (782)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=90.12 Aligned_cols=87 Identities=28% Similarity=0.342 Sum_probs=71.2
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-------cccccccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-------ELIAEVDIIP 451 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-------~~~~~~~~~p 451 (782)
.|||..........|.+......+++|||+||+||.|. |.+|..+++++||.|+|++|... ........+|
T Consensus 8 ~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~--~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP 85 (101)
T PF02225_consen 8 GPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCS--FDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIP 85 (101)
T ss_dssp EEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSC--HHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSE
T ss_pred EEEEEecCCCCcccccccccCCccccceEEEEecCCCC--HHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEE
Confidence 56775544445667888888999999999999999996 99999999999999999999211 3445668999
Q ss_pred EEEEehhhHHHHHHHH
Q 003970 452 TVRIDIAQGTQLRDYL 467 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~ 467 (782)
+++|+..+|+.|++|+
T Consensus 86 ~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 86 VVFISYEDGEALLAYI 101 (101)
T ss_dssp EEEE-HHHHHHHHHHH
T ss_pred EEEeCHHHHhhhhccC
Confidence 9999999999999986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=86.73 Aligned_cols=90 Identities=22% Similarity=0.166 Sum_probs=72.2
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC------cccc--ccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT------ELIA--EVDII 450 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~------~~~~--~~~~~ 450 (782)
.++++... .....|.+..+...+++|||+||+|+.|. |.+|..+++++||.++|++|+.. .+.. ....+
T Consensus 19 ~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~c~--f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~i 95 (122)
T cd04816 19 APLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGGCP--FADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKV 95 (122)
T ss_pred EEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCee
Confidence 45555332 22478998888888999999999999987 99999999999999999998765 1111 34579
Q ss_pred cEEEEehhhHHHHHHHHhcCCC
Q 003970 451 PTVRIDIAQGTQLRDYLAQFPR 472 (782)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~ 472 (782)
|.++|+..+|+.|++++. .+.
T Consensus 96 P~~~Is~~~G~~l~~~l~-~g~ 116 (122)
T cd04816 96 PVGVITKAAGAALRRRLG-AGE 116 (122)
T ss_pred eEEEEcHHHHHHHHHHHc-CCC
Confidence 999999999999999998 444
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=85.24 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc--c---c--ccccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE--L---I--AEVDIIP 451 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~---~--~~~~~~p 451 (782)
+|++.... ...|...++.+.+++|||+|++||.|. |.+|..+++++||.++||+|+... . . .....||
T Consensus 22 ~~~~~~~~---~~gC~~~~~~~~~l~gkIaLV~RG~Cs--F~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP 96 (120)
T cd02129 22 LPLRNLTS---SVLCSASDVPPGGLKGKAVVVMRGNCT--FYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIP 96 (120)
T ss_pred eeeecCCC---cCCCCccccCccccCCeEEEEECCCcC--HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCccc
Confidence 55555433 478999888888999999999999996 999999999999999999998752 1 1 1346789
Q ss_pred EEEEehhhHHHHHHHHh
Q 003970 452 TVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~ 468 (782)
+++|+..+|+.|.+.+.
T Consensus 97 ~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 97 VALLSYKDMLDIQQTFG 113 (120)
T ss_pred EEEEeHHHHHHHHHHhc
Confidence 99999999999998877
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-07 Score=85.52 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=71.4
Q ss_pred cccCCccccCCC--CCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-c-----cc-cccccccEEEEeh
Q 003970 387 YFADGICKCENW--MGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-E-----LI-AEVDIIPTVRIDI 457 (782)
Q Consensus 387 ~~~~~~c~~~~~--~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-~-----~~-~~~~~~p~~~i~~ 457 (782)
......|.+... ++.++.|+|+|++||.|. |.+|..+++++||.++|++|+.. . +. .....+|.++|+.
T Consensus 41 ~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~--F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~ 118 (138)
T cd02122 41 PNDHYGCDPDTRFPIPPNGEPWIALIQRGNCT--FEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITN 118 (138)
T ss_pred CCCcCCCCCCccccCCccCCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcH
Confidence 334578998776 567899999999999986 99999999999999999999874 1 11 1234789999999
Q ss_pred hhHHHHHHHHhcCCCCcEEE
Q 003970 458 AQGTQLRDYLAQFPRLPIVQ 477 (782)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~~ 477 (782)
.+|+.|++++. ++.+.+++
T Consensus 119 ~~G~~l~~~l~-~G~~Vtv~ 137 (138)
T cd02122 119 PKGMEILELLE-RGISVTMV 137 (138)
T ss_pred HHHHHHHHHHH-cCCcEEEe
Confidence 99999999998 66555443
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-07 Score=81.83 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc-------cc----cccccccEEEEehh
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-------LI----AEVDIIPTVRIDIA 458 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-------~~----~~~~~~p~~~i~~~ 458 (782)
...|.+... ..+++|||+|++||.|. |.+|..+++++||.++|++|+... +. .....||+++|+..
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~--F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCS--FLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 467986443 56799999999999986 999999999999999999997541 11 23458999999999
Q ss_pred hHHHHHHHHhcCCCCcEEE
Q 003970 459 QGTQLRDYLAQFPRLPIVQ 477 (782)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~~ 477 (782)
+|+.|++.+. .+..+++.
T Consensus 98 dG~~L~~~l~-~g~~~~~~ 115 (118)
T cd02127 98 NGYMIRKTLE-RLGLPYAI 115 (118)
T ss_pred HHHHHHHHHH-cCCceEEe
Confidence 9999999998 55555443
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=80.40 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=69.6
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC-Cc----c--cccccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM-TE----L--IAEVDIIP 451 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~-~~----~--~~~~~~~p 451 (782)
.++++.. ...|.+.++ +.+++|||+|++|+.|. |.+|..+++++||.++|++|+. .. . ......+|
T Consensus 24 g~lv~~~----~~gC~~~~~-~~~~~gkIvlv~rg~c~--f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip 96 (122)
T cd02130 24 GPLVVVP----NLGCDAADY-PASVAGNIALIERGECP--FGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVP 96 (122)
T ss_pred EEEEEeC----CCCCCcccC-CcCCCCEEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEee
Confidence 4555543 357886655 35799999999999986 8999999999999999999987 31 1 11246799
Q ss_pred EEEEehhhHHHHHHHHhcCCCCcE
Q 003970 452 TVRIDIAQGTQLRDYLAQFPRLPI 475 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~~~~~~~~ 475 (782)
.+.|+.++|+.|++.+. .+.+.+
T Consensus 97 ~v~Is~~~G~~L~~~l~-~g~~v~ 119 (122)
T cd02130 97 TVGISQEDGKALVAALA-NGGEVS 119 (122)
T ss_pred EEEecHHHHHHHHHHHh-cCCcEE
Confidence 99999999999999998 554443
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=81.00 Aligned_cols=80 Identities=23% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc--cc-----cccccccEEEEehhhHHH
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE--LI-----AEVDIIPTVRIDIAQGTQ 462 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~~-----~~~~~~p~~~i~~~~g~~ 462 (782)
...|.+... ..+++|||+||.|+.|. +.+|..+++++||.++|++|+... .. .....+|+++|+.++|..
T Consensus 27 ~~~C~~~~~-~~~v~GkIvL~~rg~c~--f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 27 TDGCTAFTN-AAAFAGKIALIDRGTCN--FTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred ccccCCCCc-CCCCCCEEEEEECCCCC--HHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 467988776 34699999999999875 899999999999999999987652 11 123579999999999999
Q ss_pred HHHHHhcCCCC
Q 003970 463 LRDYLAQFPRL 473 (782)
Q Consensus 463 l~~~~~~~~~~ 473 (782)
|++|++ .+..
T Consensus 104 l~~~l~-~g~~ 113 (118)
T cd04818 104 LKAALA-AGGT 113 (118)
T ss_pred HHHHHh-cCCc
Confidence 999998 4443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=80.04 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCccccCCCC--CC----CCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc-cc-------------ccccc
Q 003970 390 DGICKCENWM--GR----KATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-LI-------------AEVDI 449 (782)
Q Consensus 390 ~~~c~~~~~~--~~----~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-~~-------------~~~~~ 449 (782)
...|.+.... +. ...++|+|++||+|. |.+|+.+++++||.++|++|+... +. .....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~--F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCF--FTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcC--HHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 4678866442 22 378899999999987 999999999999999999998651 11 12347
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCc
Q 003970 450 IPTVRIDIAQGTQLRDYLAQFPRLP 474 (782)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~ 474 (782)
+|+++|+..+|+.|++.+. .+...
T Consensus 100 IP~v~Is~~~G~~L~~~l~-~g~~V 123 (127)
T cd02125 100 IPSALITKAFGEKLKKAIS-NGEMV 123 (127)
T ss_pred EeEEEECHHHHHHHHHHHh-cCCeE
Confidence 9999999999999999998 55433
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=80.98 Aligned_cols=77 Identities=27% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCccccCC--CCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC----ccc-----cccccccEEEEehh
Q 003970 390 DGICKCEN--WMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT----ELI-----AEVDIIPTVRIDIA 458 (782)
Q Consensus 390 ~~~c~~~~--~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~-----~~~~~~p~~~i~~~ 458 (782)
...|.+.. +...+++|||+||.|+.|. +.+|..+++++||.|+|++|+.. ... .....+|++.|+.+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~--~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCS--FSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcC--HHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 34688776 6778899999999999875 99999999999999999998764 111 13467999999999
Q ss_pred hHHHHHHHHh
Q 003970 459 QGTQLRDYLA 468 (782)
Q Consensus 459 ~g~~l~~~~~ 468 (782)
+|..|++|+.
T Consensus 108 ~g~~l~~~~~ 117 (126)
T cd00538 108 DGEALLSLLE 117 (126)
T ss_pred HHHHHHHHHh
Confidence 9999999998
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=82.20 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCCCCCCceEEEEeeCCCC---ccHHHHHHHHHHcCceEEEEecCC--Cc-----cccc--cccccEEEEehhhHHHHH
Q 003970 397 NWMGRKATGRVVLCFSTMGS---VKTEEAEAAAKKANASGLIFAEPM--TE-----LIAE--VDIIPTVRIDIAQGTQLR 464 (782)
Q Consensus 397 ~~~~~~~~gkiv~~~~g~~~---~~~~~k~~~~~~~Ga~g~i~~n~~--~~-----~~~~--~~~~p~~~i~~~~g~~l~ 464 (782)
++...+++|||+|++||.|. ..|.+|..+++++||.++||||+. .. +... ..+||++.|++.+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 34556899999999999986 449999999999999999999997 32 1221 468999999999999999
Q ss_pred HHHh
Q 003970 465 DYLA 468 (782)
Q Consensus 465 ~~~~ 468 (782)
+.+.
T Consensus 129 ~~l~ 132 (139)
T cd04817 129 AALG 132 (139)
T ss_pred HHhc
Confidence 9887
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=80.44 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc----------cc-----cccccccEEE
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE----------LI-----AEVDIIPTVR 454 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~----------~~-----~~~~~~p~~~ 454 (782)
...|.+... +.+++|||+|++||.|. |.+|..+++++||.++|++|+... +. .....||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~--f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCM--FVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCc--HHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 367986654 55799999999999987 999999999999999999976431 11 1246899999
Q ss_pred EehhhHHHHHHHHh
Q 003970 455 IDIAQGTQLRDYLA 468 (782)
Q Consensus 455 i~~~~g~~l~~~~~ 468 (782)
|+..+|..|++++.
T Consensus 104 I~~~dG~~L~~~l~ 117 (126)
T cd02126 104 LFSKEGSKLLAAIK 117 (126)
T ss_pred EEHHHHHHHHHHHH
Confidence 99999999999998
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=81.72 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc---cc------cccccccEEEEehhhH
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE---LI------AEVDIIPTVRIDIAQG 460 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~---~~------~~~~~~p~~~i~~~~g 460 (782)
...|.+.. .+++|||+|++||.|. |.+|..+++++||.++|++|+... +. .....||+++|+..+|
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~--F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G 122 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECA--FTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG 122 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCC--HHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence 46798754 4799999999999997 999999999999999999987651 11 1135899999999999
Q ss_pred HHHHHHHhcCCCC
Q 003970 461 TQLRDYLAQFPRL 473 (782)
Q Consensus 461 ~~l~~~~~~~~~~ 473 (782)
+.|++.+. .+..
T Consensus 123 ~~L~~~l~-~g~~ 134 (139)
T cd02132 123 DALNKSLD-QGKK 134 (139)
T ss_pred HHHHHHHH-cCCc
Confidence 99999998 5443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=78.59 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc-----cc----cccccccEEEEehhhH
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-----LI----AEVDIIPTVRIDIAQG 460 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-----~~----~~~~~~p~~~i~~~~g 460 (782)
...|.+. +..+++|||+|++||+|. |.+|..+++++||.++|++|+... +. .....+|+++++..++
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~Cs--F~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCG--FLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 4689766 567899999999999986 999999999999999999987641 11 2345899999999999
Q ss_pred HHHHHHHh
Q 003970 461 TQLRDYLA 468 (782)
Q Consensus 461 ~~l~~~~~ 468 (782)
+.|+.++.
T Consensus 103 ~~L~~l~~ 110 (117)
T cd04813 103 HLLSSLLP 110 (117)
T ss_pred HHHHHhcc
Confidence 99998876
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=79.13 Aligned_cols=81 Identities=19% Similarity=0.094 Sum_probs=63.9
Q ss_pred cCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC----ccccccccccEEEEehhhHHHHH
Q 003970 389 ADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT----ELIAEVDIIPTVRIDIAQGTQLR 464 (782)
Q Consensus 389 ~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~p~~~i~~~~g~~l~ 464 (782)
....|.+...+..+++|||+|++||.|. |.+|..+++++||.++||+|+.. ....+...+|.+.+ ..+|+.|+
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~--f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~ 116 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCT--FATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWI 116 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCC--HHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHH
Confidence 3468987766656899999999999986 99999999999999999998865 12223344566666 99999999
Q ss_pred HHHhcCCCC
Q 003970 465 DYLAQFPRL 473 (782)
Q Consensus 465 ~~~~~~~~~ 473 (782)
+.+. .+..
T Consensus 117 ~~l~-~G~~ 124 (129)
T cd02124 117 DALA-AGSN 124 (129)
T ss_pred HHHh-cCCe
Confidence 9988 4443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=93.98 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++...|..+++|+++.|+|.|.|+...||+..+.- .+ .+..++....+.
T Consensus 21 ~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~--~~-------------------------~~s~d~~~~~~~---- 69 (431)
T KOG3525|consen 21 NVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNY--DP-------------------------LGSYDVNRHDND---- 69 (431)
T ss_pred eeeeccccCCCCCceEEEEeeccccccCccccccc--Cc-------------------------ceeEeeecCCCC----
Confidence 57789999999999999999999999999986432 11 111111111100
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
...-.+......|||-|++-.+....+.. -..|+++++++..++++...- .+...+....
T Consensus 70 -----p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v-------~~~~~~~~~~ 129 (431)
T KOG3525|consen 70 -----PEPRCDGTNENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCV-------SDAVEAPSLG 129 (431)
T ss_pred -----cccccCCCCccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeec-------ccceeccccc
Confidence 01112233468999999999998853222 247999999999999986332 1333333222
Q ss_pred hh-cCCcEEEecccCCCCCCCC--ccChHHHHHHh-----hhccCceEEEecCCCCCC
Q 003970 283 LH-DGVDVISASFGESPPLRPF--FASNADIGSFN-----AMQHGVTVVFSGGNDGPE 332 (782)
Q Consensus 283 ~~-~gvdVIn~SlG~~~~~~~~--~~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~ 332 (782)
.. .-.++-..|||....+... .......+..+ ...+|-+.+++.||.|..
T Consensus 130 ~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~ 187 (431)
T KOG3525|consen 130 FGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTC 187 (431)
T ss_pred CCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccc
Confidence 22 3468999999987420110 01112222222 236788999999998754
|
|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-06 Score=80.58 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCccccCCCCC---CCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC----cccc-----ccccccEEEEeh
Q 003970 390 DGICKCENWMG---RKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT----ELIA-----EVDIIPTVRIDI 457 (782)
Q Consensus 390 ~~~c~~~~~~~---~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~-----~~~~~p~~~i~~ 457 (782)
...|.+....+ .++.|+|+|++||.|. |.+|..+++++||.++|++|+.. .+.. ....||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~Ct--F~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCS--FETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCC--HHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 46798776644 7899999999999986 99999999999999999999864 1111 246899999999
Q ss_pred hhHHHHHHHHh
Q 003970 458 AQGTQLRDYLA 468 (782)
Q Consensus 458 ~~g~~l~~~~~ 468 (782)
.+|+.|+.++.
T Consensus 128 ~dg~~L~~~l~ 138 (153)
T cd02123 128 STGEILKKYAS 138 (153)
T ss_pred HHHHHHHHHHh
Confidence 99999999998
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=94.47 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=59.4
Q ss_pred CcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCC-cEEEecccCCCC-CCCC--ccChHHHHHHhhhcc
Q 003970 243 RGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGV-DVISASFGESPP-LRPF--FASNADIGSFNAMQH 318 (782)
Q Consensus 243 ~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~~-~~~~--~~~~~~~a~~~a~~~ 318 (782)
-....-+||+|+|..+-.-. .....+..|+.+-...=+ -++-.||+.... ...+ .-+.+..-...|..+
T Consensus 285 VE~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasae 357 (1174)
T COG4934 285 VEWSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAE 357 (1174)
T ss_pred hhhhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhcc
Confidence 33456789999999887721 233333344333332211 334456665421 0111 223344555678899
Q ss_pred CceEEEecCCCCCCCCC--------cccCCCceEEecc
Q 003970 319 GVTVVFSGGNDGPEPSL--------VQNVAPWSICVAA 348 (782)
Q Consensus 319 Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 348 (782)
||.+++|+|.+|....+ .+..+|++++||-
T Consensus 358 GITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 358 GITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999999999866543 2334799999997
|
|
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.4e-05 Score=68.01 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=59.7
Q ss_pred EEEeecCceEEEEEEEEecCCCCCeEEEEEEeC--------CCcc-----------EEEEEcceeEeccCCeEEEEEEEE
Q 003970 676 ITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVK--------PGGV-----------EVVVWPRVLVFSWFKEEVSYYVSL 736 (782)
Q Consensus 676 ~~~~~~~~~~~~~rtvtnv~~~~~~ty~~~~~~--------p~g~-----------~v~v~p~~~~~~~~g~~~~~~v~~ 736 (782)
|++++.....+++.+|+|.|.. ..+|+++... ..|. .+...|.++++ ++|++++|+|++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti 78 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTI 78 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEE
Confidence 3455555568889999999988 9999887651 1111 56777888888 789999999999
Q ss_pred Eecc---cCCCceEEEEEEEEcC-c-eEEEeEEE
Q 003970 737 KPLK---MSQGRFDFGQIVWSDG-F-HYVRSPLV 765 (782)
Q Consensus 737 ~~~~---~~~~~~~~G~~~~~~~-~-~~v~~P~~ 765 (782)
+.+. ...+.+++|+|.+++. . ..+++|++
T Consensus 79 ~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 79 TPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp E--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9853 2457889999999974 4 48999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.4e-05 Score=71.11 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=66.3
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-ccc---------cccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-ELI---------AEVD 448 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-~~~---------~~~~ 448 (782)
.++|+.+. +.+.++...+++|||+++.++.+...+.+|..+++++||.++|++|+.. ... ....
T Consensus 25 ~~lV~~g~------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~ 98 (127)
T cd04819 25 GEPVDAGY------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPS 98 (127)
T ss_pred EEEEEeCC------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCC
Confidence 67777654 2333444667999999999998844589999999999999999998765 111 2245
Q ss_pred cccEEEEehhhHHHHHHHHh
Q 003970 449 IIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~ 468 (782)
.+|++.|+.+++..|.+.++
T Consensus 99 ~IP~v~Is~edg~~L~~~l~ 118 (127)
T cd04819 99 PIPAASVSGEDGLRLARVAE 118 (127)
T ss_pred CCCEEEEeHHHHHHHHHHHh
Confidence 79999999999999999988
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=64.86 Aligned_cols=67 Identities=25% Similarity=0.239 Sum_probs=55.4
Q ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc---c------------------------------cc-
Q 003970 400 GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE---L------------------------------IA- 445 (782)
Q Consensus 400 ~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~---~------------------------------~~- 445 (782)
..+++|||+|+++|.|. +.+|..+|+++||+|+|+|++... . ..
T Consensus 51 gv~v~GkIvLvr~G~~~--~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRAGKIS--FAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEECCCCC--HHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 45799999999999986 999999999999999999998420 0 00
Q ss_pred ---ccccccEEEEehhhHHHHHHHHh
Q 003970 446 ---EVDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 446 ---~~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
.-..||+.-|+..++..|++.+.
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcC
Confidence 11358899999999999999887
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=60.91 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=53.1
Q ss_pred eeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCC----------ccHHHHHHHHHHcCceEEEEecCCC
Q 003970 378 KAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGS----------VKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 378 ~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~----------~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
..++|+.+.......|...++...+++|||||+.++.|. ..+.+|..++.+.||.++|++++..
T Consensus 23 ~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 23 EAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred eEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 367777776555567888888888999999999998873 2477999999999999999999853
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=60.66 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc----------------cHHHHHHHHHHcCceEEEEecCCC
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV----------------KTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~----------------~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
.|+|+.+.......|...++...+++||||++.++.|.. .+..|..+++++||.|+|++|+..
T Consensus 22 aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 22 APLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred eeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 678877765455678888999999999999999998721 477899999999999999999864
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0025 Score=59.96 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=55.0
Q ss_pred CCCCCCCceEEEEeeCCCC----ccHHHH-------HHHHHHcCceEEEEecCCC---------ccc--cccccccEEEE
Q 003970 398 WMGRKATGRVVLCFSTMGS----VKTEEA-------EAAAKKANASGLIFAEPMT---------ELI--AEVDIIPTVRI 455 (782)
Q Consensus 398 ~~~~~~~gkiv~~~~g~~~----~~~~~k-------~~~~~~~Ga~g~i~~n~~~---------~~~--~~~~~~p~~~i 455 (782)
+...+++|||+++.++.|. ..+..| ...++++||.++|++|... .+. .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 3456899999999999991 124444 7899999999999998531 111 22356999999
Q ss_pred ehhhHHHHHHHHh
Q 003970 456 DIAQGTQLRDYLA 468 (782)
Q Consensus 456 ~~~~g~~l~~~~~ 468 (782)
+.+++..|...+.
T Consensus 113 s~ed~~~L~r~l~ 125 (134)
T cd04815 113 SVEDADMLERLAA 125 (134)
T ss_pred chhcHHHHHHHHh
Confidence 9999999999888
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0046 Score=58.90 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=61.6
Q ss_pred eeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCC----------------CccHHHHHHHHHHcCceEEEEecCCC
Q 003970 378 KAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMG----------------SVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 378 ~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~----------------~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
..++|+.+.......|...++...+++|||||+.++.. .+.+..|..++.+.||.++|++|+..
T Consensus 21 tg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 21 TAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred eEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 36778777655566788888888899999999988752 13578999999999999999999875
Q ss_pred cccccccccc------EEEEehhhHHHHHH
Q 003970 442 ELIAEVDIIP------TVRIDIAQGTQLRD 465 (782)
Q Consensus 442 ~~~~~~~~~p------~~~i~~~~g~~l~~ 465 (782)
.........| .+.++....+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 101 SHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred ccCcccccccccCccceEEechHHHHHHhh
Confidence 2212221122 45566555555444
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.032 Score=61.24 Aligned_cols=74 Identities=23% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC---------ccccccccccEEEEehhhHHHHHHHHhcC
Q 003970 400 GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT---------ELIAEVDIIPTVRIDIAQGTQLRDYLAQF 470 (782)
Q Consensus 400 ~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~---------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 470 (782)
..++++|+++..||.|. |.+|+..++++||.++++.|+.. .....+..||+++++.+++..+..-.. +
T Consensus 91 ~~kl~~~~~~v~RGnC~--Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~-~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCS--FTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTR-S 167 (541)
T ss_pred CccccceeEEEecccce--eehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhc-c
Confidence 45689999999999997 99999999999999999999943 233455799999999999999987655 4
Q ss_pred CCCcEE
Q 003970 471 PRLPIV 476 (782)
Q Consensus 471 ~~~~~~ 476 (782)
+++.++
T Consensus 168 ~~~V~~ 173 (541)
T KOG2442|consen 168 NDNVEL 173 (541)
T ss_pred CCeEEE
Confidence 444333
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.035 Score=56.42 Aligned_cols=55 Identities=24% Similarity=0.150 Sum_probs=43.9
Q ss_pred eeEEEccccccCCccccCCCC-----CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 379 AKLVEAFTYFADGICKCENWM-----GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~-----~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
.++||.+ .|...+++ ..+++|||+|++++.+. +.+|..+|++.||.|+|++++..
T Consensus 47 g~lVyvn------yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~--~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 47 AELVYAN------YGSPEDFEYLEDLGIDVKGKIVIARYGGIF--RGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred EEEEEcC------CCcHHHHHHHhhcCCCCCCeEEEEECCCcc--HHHHHHHHHHcCCEEEEEEeCch
Confidence 5667654 35544432 56899999999999875 78999999999999999999853
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.033 Score=52.50 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=35.4
Q ss_pred CCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 401 RKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 401 ~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
-+++|||+|++.|... +..|.++|++.||.|+|||.+.
T Consensus 37 V~v~GkIvi~RyG~~~--RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAP--LLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccCcc--hHHHHHHHHHCCCeEEEEecCh
Confidence 5799999999999875 9999999999999999999985
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.74 Score=40.71 Aligned_cols=82 Identities=18% Similarity=0.031 Sum_probs=59.3
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEEEEEcCceEEEe
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRS 762 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~~~~v~~ 762 (782)
...+.+.+|+|.+.. +..|++.......-.++++|..-.+ .+|++.++.|++.+.. .. +.+.+.|...-....+.+
T Consensus 20 ~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~~-g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-PL-GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-CC-ceEEEEEEEEECCeEEEE
Confidence 355666778999988 9999987654234457777777666 7899999999999532 33 335788888766677888
Q ss_pred EEEEEE
Q 003970 763 PLVVFV 768 (782)
Q Consensus 763 P~~~~~ 768 (782)
|+-...
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 876543
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.31 Score=40.95 Aligned_cols=64 Identities=22% Similarity=0.165 Sum_probs=38.7
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecc-cCCCce
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLK-MSQGRF 746 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~ 746 (782)
...+++.+|+|.|...-...++++..|.|-.+...|..+.--++|++++++++|+++. ...+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 4678999999998652345888888999999888888775337899999999999863 333444
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.36 Score=52.00 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=60.7
Q ss_pred CccccCCC---CCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-------ccccccccccEEEEehhhH
Q 003970 391 GICKCENW---MGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-------ELIAEVDIIPTVRIDIAQG 460 (782)
Q Consensus 391 ~~c~~~~~---~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-------~~~~~~~~~p~~~i~~~~g 460 (782)
++|.+... ........++++.||+|. |.+|..+|+++|..++|+||+.. ........++.++++...|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~Cs--Fe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCS--FEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCc--hHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 45665433 134566789999999986 99999999999999999999765 1234557889999999999
Q ss_pred HHHHHHHh
Q 003970 461 TQLRDYLA 468 (782)
Q Consensus 461 ~~l~~~~~ 468 (782)
+.+.+|..
T Consensus 141 e~l~~~~~ 148 (348)
T KOG4628|consen 141 ELLSSYAG 148 (348)
T ss_pred HHHHHhhc
Confidence 99998866
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.52 Score=45.38 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc-----------------cHHHHHHHHHHcCceEEEEecCC
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV-----------------KTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~-----------------~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
.|+|+.+-.-....-...++...|++||||++.+++... ....|...+.+.||.|+|+.++.
T Consensus 24 ~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 24 SPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 456665542222222334667789999999999776521 23469999999999999999764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.49 Score=44.34 Aligned_cols=84 Identities=24% Similarity=0.155 Sum_probs=60.8
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC---------ccc----c
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT---------ELI----A 445 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~---------~~~----~ 445 (782)
.++|-+. ....|.+.. +.-+..|.+.+++||+|+ |..|..+++++||..+|+..+.. .+. .
T Consensus 66 ~~lV~ad---Pp~aC~elr-N~~f~~d~vaL~eRGeCS--Fl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq 139 (193)
T KOG3920|consen 66 LELVLAD---PPHACEELR-NEIFAPDSVALMERGECS--FLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQ 139 (193)
T ss_pred cceeecC---ChhHHHHHh-hcccCCCcEEEEecCCce--eeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccc
Confidence 4444433 256787643 234577899999999997 99999999999999999987644 222 2
Q ss_pred ccccccEEEEehhhHHHHHHHHh
Q 003970 446 EVDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
+...+|++++-..+|-.+..-+.
T Consensus 140 ~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 140 DRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred cccCCceEEEeccceEEEehhHH
Confidence 44688999888777766555554
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=87.78 E-value=6.4 Score=35.83 Aligned_cols=55 Identities=15% Similarity=-0.034 Sum_probs=38.7
Q ss_pred eEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecc
Q 003970 684 TMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLK 740 (782)
Q Consensus 684 ~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 740 (782)
.-.++.+|+|.+.. +.+|++++..++|+.+......+.+ ++|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~-~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQ-PRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS--EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCC-CEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 45677788999988 9999999999889998555578888 7899999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 782 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 8e-88 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-85 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 4e-10 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 4e-09 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 4e-09 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 4e-09 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 4e-09 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 5e-09 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 5e-09 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 1e-08 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 1e-08 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 1e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-08 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 1e-08 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-08 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-08 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 3e-08 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 3e-08 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 3e-08 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 3e-08 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-08 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 4e-08 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-08 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 7e-08 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 7e-08 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 8e-08 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 9e-08 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 9e-08 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 9e-08 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 9e-08 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 1e-07 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 1e-07 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 2e-07 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 3e-07 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 1e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 3e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 4e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 4e-06 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 4e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 4e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 4e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 1e-05 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 1e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 1e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 1e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-05 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 2e-05 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 2e-05 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 3e-05 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 5e-05 | ||
| 2z56_A | 318 | Crystal Structure Of G56s-Propeptide:s324a-Subtilis | 5e-05 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 6e-05 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 6e-05 | ||
| 2zrq_A | 329 | Crystal Structure Of S324a-Subtilisin Length = 329 | 6e-05 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 6e-05 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 6e-05 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 6e-05 | ||
| 3a3p_A | 329 | Crystal Structure Of Complex Between E201aSA-Subtil | 7e-05 | ||
| 2z2x_A | 318 | Crystal Structure Of Mature Form Of Tk-Subtilisin L | 8e-05 | ||
| 2z2y_A | 318 | Crystal Structure Of Autoprocessed Form Of Tk-Subti | 9e-05 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 1e-04 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 2e-04 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 2e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 3e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 4e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 5e-04 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 6e-04 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 6e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329 | Back alignment and structure |
|
| >pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 600 bits (1548), Expect = 0.0
Identities = 231/667 (34%), Positives = 334/667 (50%), Gaps = 34/667 (5%)
Query: 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKG 168
TT + DF+ L N G D++V + D+G+WPES SFQ++ M IP WKG
Sbjct: 1 TTHTSDFLKL---NPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDG-MPEIPKRWKG 56
Query: 169 TCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTA 228
C G +F+ CNRKLIGA Y+ KG +N SARD GHGTH AS
Sbjct: 57 ICKPGTQFNASM-CNRKLIGANYFNKGILANDPTVNI----TMNSARDTDGHGTHCASIT 111
Query: 229 AGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVD 288
AG+ AK FG G ARG APRARLAVYK + + +D++AA D A+ DGVD
Sbjct: 112 AGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF----NEGTFTSDLIAAMDQAVADGVD 167
Query: 289 VISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA 348
+IS S+G P + I SF AM GV V S GN GP + N +PW +CVA+
Sbjct: 168 MISISYGYRFI--PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225
Query: 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVV 408
DRTF + + + I G S + C E + +
Sbjct: 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENT 285
Query: 409 LCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLA 468
+ +++ + + + +E + P V ++ +G Q+ +Y+
Sbjct: 286 IVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYV- 344
Query: 469 QFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNT 528
+ P + +T + PAP VA S+RGPS I KPDI APG+ +LAA+PPN
Sbjct: 345 KNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNV 404
Query: 529 PPTLLPSDG-RSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDT 587
T + ++ S + +SGTSM+ PH +G+ A++K+AHP WSP+AIRSA+MTTA D
Sbjct: 405 FATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDN 464
Query: 588 SHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKI 647
+ I + K + P D+GAGH++P +A+DPGL+YD P DY+ L ++ +T++Q I
Sbjct: 465 TRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTI 524
Query: 648 FLPSPDETERTSCPQAHKIPNSFINYPSITV------SNLQSTMTIKRTVKNVGQKKNAI 701
R+S P++ +NYPS + KRTV NVG+ A
Sbjct: 525 --------ARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGK-GAAT 575
Query: 702 YFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVW--SDGFHY 759
Y A + P + V P++LVF E+ SY ++++ + + G I W +G H
Sbjct: 576 YKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHS 635
Query: 760 VRSPLVV 766
VRSP+V
Sbjct: 636 VRSPIVT 642
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 588 bits (1517), Expect = 0.0
Identities = 237/669 (35%), Positives = 342/669 (51%), Gaps = 63/669 (9%)
Query: 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKG 168
TTRSWDF+G P + +IVVG+ DTG+WPES SF +E SP P WKG
Sbjct: 1 TTRSWDFLGF-----PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEG-FSPPPPKWKG 54
Query: 169 TCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTA 228
TC F CNRK+IGAR Y G G + RD GHGTHTASTA
Sbjct: 55 TCETSNNFR----CNRKIIGARSYHIGRPISPG--------DVNGPRDTNGHGTHTASTA 102
Query: 229 AGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVD 288
AG + A +GLG G ARGG P AR+A YK+CW + C++ DILAA+DDA+ DGVD
Sbjct: 103 AGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW----NDGCSDTDILAAYDDAIADGVD 158
Query: 289 VISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA 348
+IS S G + P R +F IGSF+A++ G+ S GN GP +++PW + VAA
Sbjct: 159 IISLSVGGANP-RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217
Query: 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVK-AKLVEAFTYFADGI-------CKCENWMG 400
S++DR F T++ + + S G S + + + LV G C ++
Sbjct: 218 STMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNP 277
Query: 401 RKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQG 460
G++V+C ++ G K + + + T A+ +P+ +D
Sbjct: 278 NLLKGKIVVCEASFGP------HEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDL 331
Query: 461 TQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520
Y+ R P + S T I AP V FSSRGP+ + D++KPDI+ PG+ +
Sbjct: 332 LATLRYIYSI-RSPGATIFKSTT-ILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEI 389
Query: 521 LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMT 580
LAAWP P R+ +N SGTSMSCPH++G+ +K+ +P WSPAAI+SALMT
Sbjct: 390 LAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMT 446
Query: 581 TAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYT 640
TA + + F G+GH+NP+KA+ PGL+YD +DY+ FL GY
Sbjct: 447 TASPMNARFNPQ---------AEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYN 497
Query: 641 QDQINKIFLPSPDETERTSCPQAHKIPNSFINYPSITVS---NLQSTMTIKRTVKNVGQK 697
+ +I + ++C + +NYPS +S + RT+ +V
Sbjct: 498 TQAVRRI------TGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAP- 550
Query: 698 KNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGF 757
+ + Y A + P G+ + V P VL F+ + S+ ++++ +G +VWSDG
Sbjct: 551 QASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG--SIKGFVVSASLVWSDGV 608
Query: 758 HYVRSPLVV 766
HYVRSP+ +
Sbjct: 609 HYVRSPITI 617
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-135
Identities = 116/647 (17%), Positives = 206/647 (31%), Gaps = 94/647 (14%)
Query: 133 YGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQ---KACNRKLIGA 189
G VV + D G E+++ + K + +K + N K+
Sbjct: 15 KGAGTVVAVIDAGFDKNHEAWRLTD-KTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY 73
Query: 190 RYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGG 249
Y K HGTH + +G NA G
Sbjct: 74 HDYSKDG----------------KTAVDQEHGTHVSGILSG----NAPSETKEPYRLEGA 113
Query: 250 APRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNAD 309
P A+L + ++ + + A DA++ G VI+ SFG +
Sbjct: 114 MPEAQLLLMRVEI--VNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETK 171
Query: 310 IGSFNAMQHGVTVVFSGGNDGPEPSLVQ---------------NVAPWSICVAASSIDRT 354
A GV++V S GND + A ++ VA+ S D+
Sbjct: 172 KAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQ 231
Query: 355 FPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTM 414
+ V + E + + + + +A+ Y + + G++ L
Sbjct: 232 LTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYAN-RGTKEDDFKDVKGKIALIER-- 288
Query: 415 GSVKTEEAEAAAKKANASGLIFA----EPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQF 470
G + ++ A AKKA A G++ + + VD +P I G L+D
Sbjct: 289 GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQ-- 346
Query: 471 PRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPP 530
+ + + ++ FSS G + + +KPDI APG +L++ N
Sbjct: 347 ---KTITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVANN--- 398
Query: 531 TLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR-DTSH 589
K+ SGTSMS P V+G++ L++ + P S + A +S
Sbjct: 399 ----------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 448
Query: 590 DSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFL 649
++ P GAG ++ KA + D ++ D+
Sbjct: 449 TALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVT--DKDNTSSKVHLNNVSDKFEVTV- 505
Query: 650 PSPDETERTSCPQAHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKP 709
+ ++ PQ + + V + K + QK ++
Sbjct: 506 ---NVHNKSDKPQELYYQATV---QTDKVDGKHFALAPKVLYETSWQK------ITIPAN 553
Query: 710 GGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDG 756
+V V FS +M G F G + +
Sbjct: 554 SSKQVTVPIDASRFS----------KDLLAQMKNGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 77/444 (17%), Positives = 132/444 (29%), Gaps = 95/444 (21%)
Query: 204 NASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAP--RARLAVYKIC 261
N S + + HGTH A T A G+ G P A + + K+
Sbjct: 49 NNSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQNANIHIVKVF 99
Query: 262 WGKDSDGKCTEADILAAFDDAL-HDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQ 317
+ G + ++AA D + G +V++ S G + R
Sbjct: 100 ---NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN--------THYN 148
Query: 318 HGVTVVFSGGNDGPE----PSLVQNV------------APWS-----ICVAA--SSIDRT 354
+GV ++ + GN G P+ +V A +S + ++ +I T
Sbjct: 149 NGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208
Query: 355 FPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTM 414
+D +I G+S+ S V + + V S
Sbjct: 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFS 268
Query: 415 GSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLP 474
+ + N T+ + + L++
Sbjct: 269 CGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSD 328
Query: 475 IVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLP 534
I S+ A +A + G S+ ++ G
Sbjct: 329 ITV-----PSVSVDRATGLALKAKLGQST--------TVSNQGNQ--------------- 360
Query: 535 SDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILA 594
+ + +GTSM+ PHVSGV L+ S HP S + +R+AL TA +
Sbjct: 361 ------DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA------ 408
Query: 595 GGSMKVSDPFDIGAGHINPMKAMD 618
G G IN + A
Sbjct: 409 ------GRDNQTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+ FSSRGP++ + LKP++ APG ++AA T +D + GT+M+
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAA----PGTAMA 361
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G+ AL+ AHP+W+P +++AL+ TA D I GAG +
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETA--DIVKPDEI---------ADIAYGAGRV 410
Query: 612 NPMKAMDPGLIYDLKPTDYIV 632
N KA L T Y+
Sbjct: 411 NAYKAAYYDNYAKLTFTGYVS 431
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 4e-18
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
+ D GHGTH AS AAG+ A + G + +G AP A+L K+ + G +
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAASNGKY-------KGMAPGAKLVGIKVL---NGQGSGSI 222
Query: 273 ADILA----AFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGN 328
+DI+ A + G+ VI+ S G S + + + NA G+ VV + GN
Sbjct: 223 SDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVN--NAWDAGLVVVVAAGN 280
Query: 329 DGPEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFS 366
GP V + A I V A +DFS
Sbjct: 281 SGPNKYTVGSPAAASKVITVGAVDKYDVI-------TDFS 313
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 483 TSIGKVPAPTVAYFSSRGPSSISPDIL----KPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
++ + VA +SSRG S + D + +I+APG V + W T+
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTI------ 246
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
SGTSM+ PHVSG+ A I + +P+ S +RS L A + D A G
Sbjct: 247 -------SGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG-- 297
Query: 599 KVSDPFDIGAGHIN 612
D + G G
Sbjct: 298 ---DDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 47/171 (27%), Positives = 60/171 (35%), Gaps = 30/171 (17%)
Query: 206 STNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKD 265
+T S D GHGTH A TA + GI G AP A L YK+
Sbjct: 57 ATTPINNSCTDRNGHGTHVAGTALADGGSD------QAGIY-GVAPDADLWAYKVL---L 106
Query: 266 SDGKCTEADILAAFD-----DALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQ 317
G DI AA +IS S G + + A N A
Sbjct: 107 DSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISS--AVN------YAYS 158
Query: 318 HGVTVVFSGGNDGPEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFS 366
GV +V + GN G + P +I VAA + T V +D+S
Sbjct: 159 KGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV--ADYS 207
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 36/127 (28%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FSS GP + D+ APG+ + + P N + +GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGNK-------------YGAYNGTSMA 223
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G ALI S HPNW+ +RS+L T K+ D F G G I
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTT---------------KLGDSFYYGKGLI 268
Query: 612 NPMKAMD 618
N A
Sbjct: 269 NVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 45/170 (26%), Positives = 62/170 (36%), Gaps = 34/170 (20%)
Query: 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDS 266
E +D HGTH A T A G+ G AP A L K+ +
Sbjct: 51 VPSETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVL---GA 98
Query: 267 DGKCTEADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVV 323
DG + I+ + A+ + +DVI+ S G S L+ A + A+ GV VV
Sbjct: 99 DGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA--AVD------KAVASGVVVV 150
Query: 324 FSGGNDGPEPSLVQNV----APWSICVAASSIDRTFPTEIVVNSDFSIVG 369
+ GN+G S P I V A + FS VG
Sbjct: 151 AAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQR-------ASFSSVG 193
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 36/125 (28%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FSS G + ++ APG GV + +P NT TL +GTSM+
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYPTNTYATL-------------NGTSMA 222
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G ALI S HPN S + +R+ L +TA + F G G I
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTA---------------TYLGSSFYYGKGLI 267
Query: 612 NPMKA 616
N A
Sbjct: 268 NVEAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 34/164 (20%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
D GHGTH A T A G+ G AP L K+ +S G +
Sbjct: 56 YNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVL---NSSGSGSY 103
Query: 273 ADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGND 329
+ I++ + A +G+DVI+ S G S ++ A + NA GV VV + GN
Sbjct: 104 SGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ--AVD------NAYARGVVVVAAAGNS 155
Query: 330 GPEPSLVQNVAPWS----ICVAASSIDRTFPTEIVVNSDFSIVG 369
G S P I V A + + FS VG
Sbjct: 156 GNSGSTNTIGYPAKYDSVIAVGAVDSNSNR-------ASFSSVG 192
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 30/169 (17%)
Query: 479 KPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
++ ++ + V ++SR P + APG + +
Sbjct: 405 MEAEYAMREKLPGNVYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTMS--------- 453
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILA 594
K +GTSM+ PHV+G VAL+ S + +SP +I+ A+ TA
Sbjct: 454 --KSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT----------- 500
Query: 595 GGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQ 643
+ DPF G G +N KA + + + + F +G D+
Sbjct: 501 --KLGYVDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK 547
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 2e-17
Identities = 54/306 (17%), Positives = 92/306 (30%), Gaps = 36/306 (11%)
Query: 81 KLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEV---TPVQLAYGDDI 137
+ + A I FESQ + WD L + E+ + YGD
Sbjct: 143 HWDKPHKTATANASRKIVEFESQNPGEASKLPWDKKILKENLDFELEMLNSYEKVYGD-- 200
Query: 138 VVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFE 197
+ +D ++P ++ + + + + + R +
Sbjct: 201 IKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHE---TRNVDDFLSISVNVH 257
Query: 198 EEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAV 257
+E L HGTH +S A+G+ R + G AP A++
Sbjct: 258 DEGNVLEVVG--------MSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVS 300
Query: 258 YKICWGKDSDGKCTEADILAAFDDAL-----HDGVDVISASFGESPPLRPFFASNADIGS 312
I T ++ A + +DVI+ S+GE +
Sbjct: 301 MTIG-DGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNE 359
Query: 313 FNAMQHGVTVVFSGGNDGPEPSLVQNVA----PWSICVAASSIDRTFPTEIVVNSDFSIV 368
++GV V S GN GP V P I V A + E +
Sbjct: 360 V-VNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGN 418
Query: 369 GESFIS 374
++ S
Sbjct: 419 VYTWTS 424
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 36/125 (28%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FS G DI APG+ V + +P +T +L +GTSM+
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYPGSTYASL-------------NGTSMA 217
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G AL+K +P+WS IR+ L TA + G+G +
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTA---------------TSLGSTNLYGSGLV 262
Query: 612 NPMKA 616
N A
Sbjct: 263 NAEAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 30/157 (19%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
S +D GHGTH A T A G+ G AP A L K+ + G +
Sbjct: 55 STQDGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVL---GASGSGSV 102
Query: 273 ADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGND 329
+ I + A ++G+ V + S G S L A N +A GV VV + GN
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ--AVN------SATSRGVLVVAASGNS 154
Query: 330 GPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366
G ++ V A+ + + FS
Sbjct: 155 GAGSISYPARYANAMAVGATDQNNNR-------ASFS 184
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 41/193 (21%), Positives = 61/193 (31%), Gaps = 25/193 (12%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWN-----FQS 546
VA FSSR + APG+ +L+ P + N +
Sbjct: 327 RVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 547 GTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDI 606
GTSM+ PHV+GVVA++ PN P IR L TA+ + + D
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN------------GWDHDT 426
Query: 607 GAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKI 666
G G + A+ L ++ V + + D
Sbjct: 427 GYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDG 486
Query: 667 PNSFINYPSITVS 679
F + S T
Sbjct: 487 IARFPHIDSGTYD 499
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 4e-13
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 36/181 (19%)
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYK 259
Y P + GTH A T A K+ G+GI G AP A++
Sbjct: 180 YRPAFDEELPAGTDSSYGGSAGTHVAGTIAA--KKD------GKGIV-GVAPGAKIMPIV 230
Query: 260 I---CWGKDSDGKCTEADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSF 313
I +G + + A A G V++ S+G S ++ A +
Sbjct: 231 IFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE--AFD------ 282
Query: 314 NAMQHGVTVVFSGGNDGPE-----PSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIV 368
AM+HGV +V S GN+ + P+ V I VAA +D T V + FS
Sbjct: 283 YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGV----IQVAA--LDYYGGTFRV--AGFSSR 334
Query: 369 G 369
Sbjct: 335 S 335
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 480 PSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRS 539
+ V S G + + DI APG + P
Sbjct: 223 QYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLRPDA------------ 263
Query: 540 VKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596
K SGTS + VSGV+A + S +P + ++ L+ +A + D + G
Sbjct: 264 -KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVTEGR 319
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 33/193 (17%)
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYK 259
+ + + + HGT AS A GI G P A ++ +
Sbjct: 69 FSFTQDGSPFPVKKSEALYIHGTAMASLIASRY-----------GIY-GVYPHALISSRR 116
Query: 260 ICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHG 319
+ D + + + +I+ S G+ + +
Sbjct: 117 VIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR--MGRNND 174
Query: 320 VTVVFSGGNDG-----------------PEPSLVQNVAPWSICVAASSIDRTFPTEIVVN 362
+V + GNDG S V I VAA + R T ++
Sbjct: 175 RLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHG 234
Query: 363 --SDFSIVGESFI 373
S G +++
Sbjct: 235 GGITGSRFGNNWV 247
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 4e-21
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 31/131 (23%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
T +FS+ G ++ K I APG +L A P P L +GTSM+
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMA 294
Query: 552 CPHVSGVVALIKSAH----PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG 607
P ++G+ AL+ S A+R+AL+ TA D V +P
Sbjct: 295 APVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE----------VVEEPERCL 344
Query: 608 AGHINPMKAMD 618
G +N AM
Sbjct: 345 RGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 7e-17
Identities = 48/253 (18%), Positives = 81/253 (32%), Gaps = 28/253 (11%)
Query: 130 QLAYGD-DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIG 188
GD I + I D F+ +S + W E P+ + I
Sbjct: 43 NQTLGDPQITIVIIDGDPDYTLSCFEG-AEVSKVFPYWHEP---AEPITPEDYAAFQSIR 98
Query: 189 ARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARG 248
+ +KG E+E + + H H ST G +++ FG+
Sbjct: 99 DQG-LKGKEKEEALEAVIPDTK--DRIVLNDHACHVTSTIVGQ--EHSPVFGI------- 146
Query: 249 GAPRARLAVYKICW--GKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFAS 306
AP R+ + D + ++ A D AL G ++I +F
Sbjct: 147 -APNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEI 205
Query: 307 NADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366
+ V +V GN+ E + V P ++ V A+ +D T FS
Sbjct: 206 LVQAIK-KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTP-------CHFS 257
Query: 367 IVGESFISTEVKA 379
G + + A
Sbjct: 258 NWGGNNTKEGILA 270
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 2e-20
Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 30/137 (21%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSV---------KW 542
++ FS+ G + DI APG + ++
Sbjct: 348 NLSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 543 NFQSGTSMSCPHVSGVVALIKSA-HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS 601
+Q+GT+++ P VSG +ALI H P L +++ S
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSRY-------- 452
Query: 602 DPFDIGAGHINPMKAMD 618
G G ++ KA++
Sbjct: 453 -----GHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 27/162 (16%)
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYK 259
+ + D GHGT + + + + G AP + +Y+
Sbjct: 181 FRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG-----------KLI-GVAPNNKFTMYR 228
Query: 260 ICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSF------ 313
+ S + A A +DG VI+ S G L
Sbjct: 229 VF---GSKK-TELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDAL 284
Query: 314 -----NAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASS 350
A + VV + GNDG + + Q +
Sbjct: 285 QKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGE 326
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 3e-20
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
VA FSSRGP+ +KPD+ APG +L+A P + ++ S K+ + GTSM+
Sbjct: 201 HVAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMA 257
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
P V+G VA ++ + +L+ A + D G + G G +
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAA-LIAGAAD---IGLG---YPNGNQGWGRV 310
Query: 612 NPMKAMDPGLIYD 624
K+++ + +
Sbjct: 311 TLDKSLNVAYVNE 323
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 9e-15
Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 59/235 (25%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G +V + DTG+ + ++G K+
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMHEA-------FRG----------------KITALYALG 57
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
+A D GHGTH A + G+ + N G AP+A
Sbjct: 58 ----------------RTNNANDTNGHGTHVAGSVLGNGSTNKGM-----------APQA 90
Query: 254 RLAVYKICWGKDSDGKCT--EADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIG 311
L I DS G +++ F A G + + S+G + + + ++
Sbjct: 91 NLVFQSIM---DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWG-AAVNGAYTTDSRNVD 146
Query: 312 SFNAMQHGVTVVFSGGNDGPEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSD 364
+ ++ +T++F+ GN+GP + A +I V A+ R N +
Sbjct: 147 DY-VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNIN 200
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 37/127 (29%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+A FS+ G D+ APG+ +++ N + + SGTSM+
Sbjct: 190 RLASFSNYGTW--------VDVVAPGVDIVSTITGNR-------------YAYMSGTSMA 228
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G+ AL+ S + IR A+ TA S G I
Sbjct: 229 SPHVAGLAALLASQGR--NNIEIRQAIEQTA--DKIS------------GTGTYFKYGRI 272
Query: 612 NPMKAMD 618
N A+
Sbjct: 273 NSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 45/161 (27%), Positives = 57/161 (35%), Gaps = 37/161 (22%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
D HGTH A AA GIA G AP R+ + D +G T
Sbjct: 65 DPMDLNNHGTHVAGIAAAETNN-------ATGIA-GMAPNTRILAVRAL---DRNGSGTL 113
Query: 273 ADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGND 329
+DI A A G +VI+ S G + L A N A G VV + GN+
Sbjct: 114 SDIADAIIYAADSGAEVINLSLGCDCHTTTLEN--AVN------YAWNKGSVVVAAAGNN 165
Query: 330 GPE----PSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366
G P+ +NV I V A + FS
Sbjct: 166 GSSTTFEPASYENV----IAVGAVDQYDRL-------ASFS 195
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-19
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 26/96 (27%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
++ F++ DI APG+G+ + + + + SGT+M+
Sbjct: 214 RLSDFTNTNEE--------IDIVAPGVGIKSTYLDS-------------GYAELSGTAMA 252
Query: 552 CPHVSGVVALIKSAHPN-----WSPAAIRSALMTTA 582
PHV+G +ALI + + S I + L+ A
Sbjct: 253 APHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA 288
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 8e-14
Identities = 42/168 (25%), Positives = 58/168 (34%), Gaps = 41/168 (24%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
+ D GHGTH A T A + G G+ G AP+A L + K DG
Sbjct: 79 NFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKAL---SGDGSGEM 126
Query: 273 ADILAAFDDA------LHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVV 323
I A A + + +I+ S G +S L A A+ + V+VV
Sbjct: 127 GWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD--AVK------YAVSNNVSVV 178
Query: 324 FSGGNDGPEPSLVQNV-----APWSICVAASSIDRTFPTEIVVNSDFS 366
+ GN+G I V A D SDF+
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRL-------SDFT 219
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 7e-19
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 37/127 (29%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+ FS+ G D+ APG + + +P +T + SGTSM+
Sbjct: 189 NKSSFSTYGSW--------VDVAAPGSSIYSTYPTST-------------YASLSGTSMA 227
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+GV L+ S S + IR+A+ TA S G +
Sbjct: 228 TPHVAGVAGLLAS--QGRSASNIRAAIENTA--DKIS------------GTGTYWAKGRV 271
Query: 612 NPMKAMD 618
N KA+
Sbjct: 272 NAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 43/161 (26%), Positives = 59/161 (36%), Gaps = 37/161 (22%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
+ ++ GHGTH A AA GIA G AP+A + ++ D+ G T
Sbjct: 64 TPQNGNGHGTHCAGIAAAVTNN-------STGIA-GTAPKASILAVRVL---DNSGSGTW 112
Query: 273 ADILAAFDDALHDGVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGND 329
+ A G VIS S G + L+ A N A G VV + GN
Sbjct: 113 TAVANGITYAADQGAKVISLSLGGTVGNSGLQQ--AVN------YAWNKGSVVVAAAGNA 164
Query: 330 GPE----PSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366
G P+ N I VA++ + S FS
Sbjct: 165 GNTAPNYPAYYSNA----IAVASTDQNDNK-------SSFS 194
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 7e-18
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 48/140 (34%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+A FS+R P +++APG+ +L+ +P + + GT+M+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMA 248
Query: 552 CPHVSGVVALIKSAH-------------PNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
PHVSGVVALI++A+ + S +R L TA +
Sbjct: 249 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT---------- 298
Query: 599 KVSDPFDIGAGHINPMKAMD 618
D G G + A+
Sbjct: 299 --GWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 40/194 (20%), Positives = 61/194 (31%), Gaps = 58/194 (29%)
Query: 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYK 259
L + + R D GHGTH T A A N G+ G AP ++ +
Sbjct: 55 VSTLRGKVSTKLRDCADQNGHGTHVIGTIA---ALNN-----DIGVV-GVAPGVQIYSVR 105
Query: 260 ICWGKDSDGKCTEADILAAFDDALHD--------------------GVDVISASFG---E 296
+ D+ G + +DI + A+ +VIS S G +
Sbjct: 106 VL---DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD 162
Query: 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPE----PSLVQNVAPWSICVAASSID 352
L A G+ +V + GN+G P+ V I V A +
Sbjct: 163 DSYLYD--MII------QAYNAGIVIVAASGNEGAPSPSYPAAYPEV----IAVGAIDSN 210
Query: 353 RTFPTEIVVNSDFS 366
+ FS
Sbjct: 211 DNI-------ASFS 217
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 31/131 (23%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FS+ G D+ APG +L+ T + + ++F +GTSM+
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMA 278
Query: 552 CPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG 607
PHVSGV AL+ SA + N +PA ++ L++T + D L G
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRAL-------------G 325
Query: 608 AGHINPMKAMD 618
+G ++ A++
Sbjct: 326 SGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 46/233 (19%), Positives = 71/233 (30%), Gaps = 42/233 (18%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G ++VV + DTG+ + + G F + G
Sbjct: 31 GQNVVVAVVDTGILHHRD--------------LNANVLPGYDFISNSQISLDGDGRDADP 76
Query: 194 KGFEEEYGPLNASTNREYRS-ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPR 252
+ + + R D HG+H A T A N G+A G A
Sbjct: 77 FDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAV-TNN------RIGVA-GVAYG 128
Query: 253 ARLAVYKI---CWGKDSDG-KCTE--ADILAAFDDALHDGVDVISASFGESPPLRPFFAS 306
A++ + C G DSD A A + VI+ S G +
Sbjct: 129 AKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQT 188
Query: 307 NADIGSFNAMQHGVTVVFSGGNDGPE-----PSLVQNVAPWSICVAASSIDRT 354
D A + G VV + GN+ P+ NV + V A++
Sbjct: 189 MID----RATRLGALVVVAAGNENQNASNTWPTSCNNV----LSVGATTSRGI 233
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 48/140 (34%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+A FS+R P +++APG+ +L+ +P + + GT+M+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMA 323
Query: 552 CPHVSGVVALIKSAH-------------PNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
PHVSGVVALI++A+ + S +R L TA +
Sbjct: 324 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT---------- 373
Query: 599 KVSDPFDIGAGHINPMKAMD 618
D G G + A+
Sbjct: 374 --GWDADYGYGVVRAALAVQ 391
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 52/332 (15%), Positives = 82/332 (24%), Gaps = 108/332 (32%)
Query: 73 YSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLHTTRSWDFM-----------GLILD 121
+ ++ L +M V + L SW G+
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKA 181
V + I V + DTGV +
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL-------------AANIAWC-------- 129
Query: 182 CNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGL 241
L + + R D GHGTH T A
Sbjct: 130 ------------------VSTLRGKVSTKLRDCADQNGHGTHVIGTIAAL--------NN 163
Query: 242 GRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD---------------- 285
G+ G AP ++ ++ D+ G + +DI + A+
Sbjct: 164 DIGVV-GVAPGVQIYSVRVL---DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGD 219
Query: 286 ----GVDVISASFG---ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPE----PS 334
+VIS S G + L A G+ +V + GN+G P+
Sbjct: 220 PDDDAAEVISMSLGGPADDSYLYD--MII------QAYNAGIVIVAASGNEGAPSPSYPA 271
Query: 335 LVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366
V I V A + + FS
Sbjct: 272 AYPEV----IAVGAIDSNDNI-------ASFS 292
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 21/91 (23%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+ + FS+ G D+ APG + +AW T+ SGTSM+
Sbjct: 184 SRSSFSNWGSCV--------DLFAPGSQIKSAWYDGGYKTI-------------SGTSMA 222
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
PHV+GV AL + +P + L + A
Sbjct: 223 TPHVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)
Query: 212 RSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCT 271
+ D GHGTH A T GS G A + ++ G T
Sbjct: 62 ADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVL---SCSGSGT 104
Query: 272 EADILAAFDDAL--HDGVDVISASFGESPPLRPFFASNA-DIGSFNAMQHGVTVVFSGGN 328
+ +++ D G V + S G S A D A+Q GV+ + + GN
Sbjct: 105 TSGVISGVDWVAQNASGPSVANMSLG-------GGQSTALDSAVQGAIQSGVSFMLAAGN 157
Query: 329 DGPEPSLVQNV----APWSICVAASSID 352
+ N P + V +++
Sbjct: 158 SNADAC---NTSPARVPSGVTVGSTTSS 182
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+ + FS+ G DI APG + ++W S+ + N SGTSM+
Sbjct: 186 SRSSFSNYGTCL--------DIYAPGSSITSSWYT--------SNSAT---NTISGTSMA 226
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
PHV+GV AL +PN SPA + + L T A
Sbjct: 227 SPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 36/149 (24%)
Query: 212 RSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARL-AVYKICWGKDSDGKC 270
A D GHGTH A T GS G A + V ++ + G
Sbjct: 64 YDATDCNGHGTHVAGTIGGSTY--------------GVAKNVNVVGV-RVL---NCSGSG 105
Query: 271 TEADILAAFDDAL--HDGVDVISASFGESPPLRPFFASNA-DIGSFNAMQHGVTVVFSGG 327
+ + ++A + G V + S G AS A D A+ G+T V + G
Sbjct: 106 SNSGVIAGINWVKNNASGPAVANMSLG-------GGASQATDDAVNAAVAAGITFVVAAG 158
Query: 328 NDGPEPSLVQNV----APWSICVAASSID 352
ND N A +I V +++ +
Sbjct: 159 NDNSNAC---NYSPARAADAITVGSTTSN 184
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FS+ G D+ APG + +AW + T +GTSM+
Sbjct: 184 ARASFSNYGSCV--------DLFAPGASIPSAWYTSDTAT-----------QTLNGTSMA 224
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
PHV+GV AL +P+ +PA++ SA++ A
Sbjct: 225 TPHVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 34/147 (23%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTE 272
+ +D GHGTH A T G G A L ++ D +G +
Sbjct: 63 NGQDCNGHGTHVAGTIGGVTY--------------GVAKAVNLYAVRVL---DCNGSGST 105
Query: 273 ADILAAFDDALHDGVD--VISASFGESPPLRPFFASNA-DIGSFNAMQHGVTVVFSGGND 329
+ ++A D + V + S G S A D N++ GV + GND
Sbjct: 106 SGVIAGVDWVTRNHRRPAVANMSLG-------GGVSTALDNAVKNSIAAGVVYAVAAGND 158
Query: 330 GPEPSLVQNV----APWSICVAASSID 352
N ++ V A++
Sbjct: 159 NANAC---NYSPARVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 9e-15
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG ++ A + QSGTS + HV+G+ A++ SA P +
Sbjct: 208 DLFAPGEDIIGASSDCSTCF-----------VSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 572 AAIRSALMTTA 582
A +R L+ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 38/160 (23%)
Query: 204 NASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWG 263
R +R A HGTH A +G A G A A + ++
Sbjct: 58 EEDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVL-- 101
Query: 264 KDSDGKCTEADILAAFDDALHD------GVDVISASFGESPPLRPFFASNA-DIGSFNAM 316
+ GK T + L + G V+ S +
Sbjct: 102 -NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA-------GGYSRVLNAACQRLA 153
Query: 317 QHGVTVVFSGGNDGPEPSLVQNV----APWSICVAASSID 352
+ GV +V + GN + AP I V A++
Sbjct: 154 RAGVVLVTAAGNFRDDAC---LYSPASAPEVITVGATNAQ 190
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 5e-14
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG ++ A + QSGTS + HV+G+ A++ SA P +
Sbjct: 360 DLFAPGEDIIGASSDCSTCF-----------VSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 572 AAIRSALMTTA 582
A +R L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 1e-10
Identities = 52/353 (14%), Positives = 97/353 (27%), Gaps = 92/353 (26%)
Query: 30 YIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAAS 89
Y+V L + ++ +L + K +L+ + GF K++
Sbjct: 78 YVVVL--KEETHLSQSERTARRLQAQAARRGYLTK--ILHVFHGLLPGFLVKMSGDLLEL 133
Query: 90 LAEMEEVISIFESQVLKLHTTRSWDFMGLILDNTGEVTPVQLAY-----GDDIVVGIFDT 144
++ V I E + + W+ L+ Y G + V + DT
Sbjct: 134 ALKLPHVDYIEEDSSVFAQSI-PWN-----LERITPPRYRADEYQPPDGGSLVEVYLLDT 187
Query: 145 GVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLN 204
+ + + R ++ V
Sbjct: 188 SIQSDHREIE----------------------------GRVMVTDFENVPE--------- 210
Query: 205 ASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGK 264
R +R A HGTH A +G A G A A + ++
Sbjct: 211 EDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVL--- 253
Query: 265 DSDGKCTEADILAAFDDALHDGVD------VISASFGESPPLRPFFASNA-DIGSFNAMQ 317
+ GK T + L + + V+ S + +
Sbjct: 254 NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA-------GGYSRVLNAACQRLAR 306
Query: 318 HGVTVVFSGGNDGPE-----PSLVQNVAPWSICVAASSIDRTFPTEIVVNSDF 365
GV +V + GN + P+ V I V A++ T + ++F
Sbjct: 307 AGVVLVTAAGNFRDDACLYSPASAPEV----ITVGATNAQDQPVTLGTLGTNF 355
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+ FS+ G DI APG + + W T+ SGTSM+
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIGGRTNTI-------------SGTSMA 227
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
PH++G+ A + S A+ + T +
Sbjct: 228 TPHIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 36/153 (23%), Positives = 51/153 (33%), Gaps = 41/153 (26%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARL-AVYKICWGKDSDGKCT 271
+ARD GHGTH A T G A + + V K+ D G +
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGV-KVL---DDSGSGS 104
Query: 272 EADILAAFDDALHDGVD-------VISASFGESPPLRPFFASNA-DIGSFNAMQHGVTVV 323
++I+A D D V S S G S A + + GV V
Sbjct: 105 LSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG-------YSAALNQAAARLQSSGVFVA 157
Query: 324 FSGGNDGPEPSLVQNV----APWSICVAASSID 352
+ GND + + N P V A+ +
Sbjct: 158 VAAGNDNRDAA---NTSPASEPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
+ FS+ G DI PG +L+ W + ++ SGTSM+
Sbjct: 188 RRSSFSNYGSVL--------DIFGPGTDILSTWIGGSTRSI-------------SGTSMA 226
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
PHV+G+ A + + + A+ + TA
Sbjct: 227 TPHVAGLAAYLMTLGKT-TAASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 36/153 (23%), Positives = 51/153 (33%), Gaps = 41/153 (26%)
Query: 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARL-AVYKICWGKDSDGKCT 271
S+RD GHGTH A T G A + +L V K+ D +G
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGV-KVL---DDNGSGQ 103
Query: 272 EADILAAFDDALHDGVD-------VISASFGESPPLRPFFASNA-DIGSFNAMQHGVTVV 323
+ I+A D D + V S S G S++ + + GV V
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-------YSSSVNSAAARLQSSGVMVA 156
Query: 324 FSGGNDGPEPSLVQNV----APWSICVAASSID 352
+ GN+ + N P V AS
Sbjct: 157 VAAGNNNADAR---NYSPASEPSVCTVGASDRY 186
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 4/144 (2%)
Query: 502 SSISPDILKPDITAPGIGVLAAWPPN---TPPTLLPSDGRSVKWNFQSGTSMSCPHVSGV 558
SS + P + LA + ++ +D R +GTS S P +G+
Sbjct: 211 SSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGI 270
Query: 559 VALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMD 618
+AL A+ N + ++ ++ T+ + D G + G G ++ +
Sbjct: 271 IALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSH-SYGYGLLDAGAMVA 329
Query: 619 PGLIYDLKPTDYIVFLRNIGYTQD 642
+ + + +D
Sbjct: 330 LAQNWTTVAPQRKCIVEILVEPKD 353
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 6e-05
Identities = 45/250 (18%), Positives = 75/250 (30%), Gaps = 71/250 (28%)
Query: 120 LDNTGE----VTPV-QLAY-GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRG 173
L + V + G IVV I D G+
Sbjct: 17 LSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAG------------------ 58
Query: 174 EKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIA 233
+DP GA + V + + P + + HGT A A A
Sbjct: 59 -NYDP---------GASFDVNDQDPDPQP--------RYTQMNDNRHGTRCAGEVAAV-A 99
Query: 234 KNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISAS 293
N G G A AR+ ++ G+ +D EA L + + + SAS
Sbjct: 100 NN------GVCGV-GVAYNARIGGVRMLDGEVTDA--VEARSLGLNPN----HIHIYSAS 146
Query: 294 FGESPPLRPFFASNADIGSFNAMQHGVT---------VVFSGGNDGPEPSLVQNVA---- 340
+G P + A GV+ V++ GN G E
Sbjct: 147 WG--PEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNS 204
Query: 341 PWSICVAASS 350
+++ +++++
Sbjct: 205 IYTLSISSAT 214
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 6e-09
Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 10/188 (5%)
Query: 502 SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS-DGRSVKWNFQSGTSMSCPHVSGVVA 560
+I L P + V+A + + S D N GTS + P +GV
Sbjct: 224 GAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYT 283
Query: 561 LIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPG 620
L+ A+PN + ++ + +A + + D +M G G I+ K ++
Sbjct: 284 LLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMS 343
Query: 621 LIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSFINYPSITVSN 680
++ +L + +Q + T Q + +
Sbjct: 344 KTWENVNAQTWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANF---------KRIEH 394
Query: 681 LQSTMTIK 688
+ T+ I
Sbjct: 395 VTVTVDID 402
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 35/151 (23%), Positives = 47/151 (31%), Gaps = 29/151 (19%)
Query: 219 GHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278
HGT A A K F G+ G A+++ +I G T D A+
Sbjct: 99 YHGTRCAGEIAA--KKGNNFCGV------GVGYNAKISGIRI-----LSGDITTEDEAAS 145
Query: 279 FDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVT---------VVFSGGND 329
L D D+ S S+G P A+ GVT VF+ GN
Sbjct: 146 LIYGL-DVNDIYSCSWG--PADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNG 202
Query: 330 GPEPSLVQNVA----PWSICVAASSIDRTFP 356
G +SI + A P
Sbjct: 203 GTRGDNCNYDGYTNSIYSITIGAIDHKDLHP 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 49/331 (14%), Positives = 91/331 (27%), Gaps = 101/331 (30%)
Query: 6 HGFWGLSLSLSLSFVHSTSTASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKR 65
H L+ S + YL P + ++ + LS + S D
Sbjct: 293 HHSMTLTPDEVKSLL-----LK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 66 SLLYGYKYSFSGFSAKLNSSQAASL-----AEMEEV---ISIFESQVLKLHTTRSWDFMG 117
+ +K+ KL + +SL AE ++ +S+F
Sbjct: 343 TWDN-WKHVNC---DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH------------ 386
Query: 118 LILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSM------SPIPSSWKGTCV 171
I P ++ + W + + S + K + +
Sbjct: 387 -I--------PTI-------LLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 172 R--------GEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTH 223
K + + A +R ++ K F+ + Y +GH H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY----SHIGH--H 480
Query: 224 TASTAAGSIAKNAGF------FG-LGRGIARGGAPR----------ARLAVYK--ICWGK 264
+ F F L + I +L YK IC
Sbjct: 481 LK--NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--- 535
Query: 265 DSDGKCTEADILAAFDDALHD-GVDVISASF 294
D+D K ++ A D L ++I + +
Sbjct: 536 DNDPKYER--LVNAILDFLPKIEENLICSKY 564
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.89 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.83 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.92 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.76 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.58 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.56 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.46 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.09 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.54 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.26 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 94.35 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.35 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.69 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 87.35 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 85.29 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 83.99 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-123 Score=1080.45 Aligned_cols=629 Identities=37% Similarity=0.620 Sum_probs=568.9
Q ss_pred cccccccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceee
Q 003970 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIG 188 (782)
Q Consensus 109 ~~~s~~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig 188 (782)
|+++|+|+||.. ...+|..+.+|+||+|||||||||++||+|.+.+ ++|+|.+|+|.|+.+.+|+. ..||+|++|
T Consensus 1 Tt~s~~flgl~~---~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g-~~p~p~~wkg~c~~g~~f~~-~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNP---SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDG-MPEIPKRWKGICKPGTQFNA-SMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCS---SSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTT-CCCCCTTCCCCBCCBTTBCT-TSCCSSEEE
T ss_pred CCCChHHcCCCC---chhhHhccCCCCCCEEEEEccCCCCCChhhccCC-CCCCccccccccccCccccc-cccccceee
Confidence 578999999973 4679999999999999999999999999999987 99999999999999999998 899999999
Q ss_pred eEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCC
Q 003970 189 ARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDG 268 (782)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~ 268 (782)
+++|.+++.... .+ ...+..+++|.+||||||||||||+.+++.+++|++.+.+.||||+|+|++||+|+..+
T Consensus 76 ~~~f~~~~~~~~--~~--~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--- 148 (649)
T 3i6s_A 76 ANYFNKGILAND--PT--VNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG--- 148 (649)
T ss_dssp EEECCHHHHHHC--TT--CCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTE---
T ss_pred eEeccCcccccc--cc--cccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCC---
Confidence 999987654332 11 12345678899999999999999999999999999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecc
Q 003970 269 KCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA 348 (782)
Q Consensus 269 ~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA 348 (782)
+..+++++||+||+++|+||||||||... ..+..+.+..++++|+++|++||+||||+|+...++.+.+||+|+|||
T Consensus 149 -~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~--~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgA 225 (649)
T 3i6s_A 149 -TFTSDLIAAMDQAVADGVDMISISYGYRF--IPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225 (649)
T ss_dssp -ECHHHHHHHHHHHHHTTCSEEEECCCCCS--CCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEE
T ss_pred -CCHHHHHHHHHHHHHcCCCEEEeCCccCC--cccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEee
Confidence 99999999999999999999999999875 677889999999999999999999999999999999999999999999
Q ss_pred cccCcccceeEEeCCccEEEeeeeecccc---eeeEEEccccccCCccccCCCCCCCC--CceEEEEeeCCCCccHHHHH
Q 003970 349 SSIDRTFPTEIVVNSDFSIVGESFISTEV---KAKLVEAFTYFADGICKCENWMGRKA--TGRVVLCFSTMGSVKTEEAE 423 (782)
Q Consensus 349 s~~d~~~~~~~~~~~~~~~~g~~~~~~~~---~~~lv~~~~~~~~~~c~~~~~~~~~~--~gkiv~~~~g~~~~~~~~k~ 423 (782)
++.||.|+..+.++|++.+.|.+++.... .+|+++.. ....|.+..+++.++ +|||++|.|+.+. +.+|.
T Consensus 226 st~dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~---~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~--~~~k~ 300 (649)
T 3i6s_A 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK---TLSDCSSEELLSQVENPENTIVICDDNGDF--SDQMR 300 (649)
T ss_dssp EECSCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT---TTTTCCCHHHHTTSSSGGGCEEEECCCSCH--HHHHH
T ss_pred eecccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc---cccccccccccccccccCCcEEEEeCCCcc--HHHHH
Confidence 99999999999999999999999987653 28999976 467899988888877 9999999999875 99999
Q ss_pred HHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCC
Q 003970 424 AAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSS 503 (782)
Q Consensus 424 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 503 (782)
.+++++|+.|+|++|+......+.+.+|+++++..+|+.|++|++ ++.+++++|.+..+..+..+.+.++.||||||+.
T Consensus 301 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~-s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~ 379 (649)
T 3i6s_A 301 IITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVK-NSVTPTATITFQETYLDTKPAPVVAASSARGPSR 379 (649)
T ss_dssp HHHHHTCSEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHH-TCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCT
T ss_pred HHHHhcCceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHh-cCCCceEEEeecceeeccCCCCcccccCCCCCCC
Confidence 999999999999999987666778899999999999999999999 9999999999999998888899999999999998
Q ss_pred CCCCCcccceeecCceEEeecCCCCCCCCCCCCC-CccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 003970 504 ISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDG-RSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582 (782)
Q Consensus 504 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA 582 (782)
..++++||||+|||++|+++|+..........+. +...|..+||||||||||||++|||||+||+|+|++||++||+||
T Consensus 380 ~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA 459 (649)
T 3i6s_A 380 SYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTA 459 (649)
T ss_dssp TCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTC
T ss_pred CCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence 7789999999999999999999865433322222 335899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCCCCcCCCCCccccccCccccCCCceeecCCchhhHhhhhccCCCccceeeecCCCCCCCCCcc--C
Q 003970 583 YTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTS--C 660 (782)
Q Consensus 583 ~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--c 660 (782)
.++++.+.++.++....++++++||+|+||+.+|++||||||++++||+.|||++||+..+|+.+++ .++. |
T Consensus 460 ~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~------~~~~~~C 533 (649)
T 3i6s_A 460 DPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR------SSASHNC 533 (649)
T ss_dssp BCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT------TTSCC-C
T ss_pred ccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec------CCCcCCC
Confidence 9999999999887677888999999999999999999999999999999999999999999999998 6677 9
Q ss_pred CCCCCCCCCCCCcCeEEEee-cCce-----EEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEE
Q 003970 661 PQAHKIPNSFINYPSITVSN-LQST-----MTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYV 734 (782)
Q Consensus 661 ~~~~~~~~~~ln~ps~~~~~-~~~~-----~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v 734 (782)
+. .+.+||||||++.+ +.+. ++|+|||||||+. .++|+++++.|.|++|+|+|++|+|.+.+|+++|+|
T Consensus 534 ~~----~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~-~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v 608 (649)
T 3i6s_A 534 SN----PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKG-AATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTL 608 (649)
T ss_dssp CC----CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC---CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEE
T ss_pred CC----chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCC-CcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEE
Confidence 86 35799999999998 5656 8999999999987 899999999999999999999999988999999999
Q ss_pred EEEecccCCCceEEEEEEEEc--CceEEEeEEEEEEc
Q 003970 735 SLKPLKMSQGRFDFGQIVWSD--GFHYVRSPLVVFVN 769 (782)
Q Consensus 735 ~~~~~~~~~~~~~~G~~~~~~--~~~~v~~P~~~~~~ 769 (782)
+|+......+.|.||+|+|+| ++|.||+||+|+..
T Consensus 609 ~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 609 TIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 999865556678999999999 89999999999876
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-112 Score=997.23 Aligned_cols=608 Identities=39% Similarity=0.686 Sum_probs=511.6
Q ss_pred cccccccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceee
Q 003970 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIG 188 (782)
Q Consensus 109 ~~~s~~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig 188 (782)
|+++|+|+||+.. +|.+..+|+||+|||||||||++||+|+|.+ +++++.+|+|.|+.+.+| .||+|++|
T Consensus 1 tt~s~~flGl~~~-----~~~~~~~G~gViVgViDTGId~~Hp~f~d~g-~~~~~~~w~g~~~~~~~~----~~n~k~ig 70 (621)
T 3vta_A 1 TTRSWDFLGFPLT-----VPRRSQVESNIVVGVLDTGIWPESPSFDDEG-FSPPPPKWKGTCETSNNF----RCNRKIIG 70 (621)
T ss_dssp CCSHHHHTTCCTT-----CCCCHHHHTTCEEEEEESCBCTTSGGGCCTT-CCCCCTTCCCCBCCSSSC----CCCSSEEE
T ss_pred CCCChhHcCCCcc-----ccccCCCCCCCEEEEEecCCCCCChhhcCCC-CCCcccccccccccCCCc----ccCcceee
Confidence 5789999999854 8888899999999999999999999999887 999999999999988764 59999999
Q ss_pred eEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCC
Q 003970 189 ARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDG 268 (782)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~ 268 (782)
+++|..+..... .+..+++|.+||||||||||||+...+.+++|++.+.++||||+|+|++||+|++.+
T Consensus 71 ~~~~~~~~~~~~--------~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--- 139 (621)
T 3vta_A 71 ARSYHIGRPISP--------GDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG--- 139 (621)
T ss_dssp EEECCCSSSCCT--------TCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTE---
T ss_pred eeecccCCccCC--------CCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCC---
Confidence 999987654332 244678999999999999999999888888898888999999999999999999875
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecc
Q 003970 269 KCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA 348 (782)
Q Consensus 269 ~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA 348 (782)
|..+++++||++|+++|+||||||||+..+ ..+..+++++++++|+++||+||+||||+|+...++.+.+||+++|++
T Consensus 140 -~~~~di~~a~~~a~~~g~dVin~SlG~~~~-~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~a 217 (621)
T 3vta_A 140 -CSDTDILAAYDDAIADGVDIISLSVGGANP-RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217 (621)
T ss_dssp -ECHHHHHHHHHHHHHHTCSEEEECCCCCCG-GGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEE
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEecCCCCCC-CCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEE
Confidence 889999999999999999999999998753 456678899999999999999999999999999999999999999999
Q ss_pred cccCcccceeEEeCCccEEEeeeeecccce-eeEEEccccc-------cCCccccCCCCCCCCCceEEEEeeCCCCccHH
Q 003970 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVK-AKLVEAFTYF-------ADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420 (782)
Q Consensus 349 s~~d~~~~~~~~~~~~~~~~g~~~~~~~~~-~~lv~~~~~~-------~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~ 420 (782)
++.||.|...+.++++..+.+.+++..... ++++...... ....|.+..+++.+++|||++|.++. .
T Consensus 218 st~d~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~-----~ 292 (621)
T 3vta_A 218 STMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF-----G 292 (621)
T ss_dssp ECCSEEEEEEEEETTSCEEEEBCCCCSCCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC-----C
T ss_pred eeccccceeeEEeccCceeeeeecccCCCcccccccccccccccccccccccccccccccccccceEEEEecCC-----C
Confidence 999999999999999999999887765433 7777765533 24579999999999999999998764 3
Q ss_pred HHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCC
Q 003970 421 EAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRG 500 (782)
Q Consensus 421 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 500 (782)
.+..+....|+.++|++++... ..+.+.+|...++..++..++.|+. .+..+.+++....+.. ....+.++.|||||
T Consensus 293 ~~~~~~~~~Ga~gvi~~~~~~~-~~~~~~lP~~~v~~~~g~~i~~~~~-~~~~~~a~~~~~~~~~-~~~~~~va~FSSrG 369 (621)
T 3vta_A 293 PHEFFKSLDGAAGVLMTSNTRD-YADSYPLPSSVLDPNDLLATLRYIY-SIRSPGATIFKSTTIL-NASAPVVVSFSSRG 369 (621)
T ss_dssp HHHHHHHHTTCSEEEEECSCCS-SCCCCSSSEEEECHHHHHHHHHHHH-HHSSCCEEECCCEEEE-CTTCCCBCTTSCCC
T ss_pred hhHHhhhhcceeEEEEEecCCC-cccccccceEEECHHHHHHHHHHHh-ccCCcceEEecceEec-cCCCCceeeecCCC
Confidence 5677888899999999988653 3456789999999999999999999 7777888776655443 45688999999999
Q ss_pred CCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 003970 501 PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMT 580 (782)
Q Consensus 501 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~ 580 (782)
|+...++++||||+|||++|+|+++....... +.....|..+||||||||||||++|||||+||+|+|++||++||+
T Consensus 370 P~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmt 446 (621)
T 3vta_A 370 PNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMT 446 (621)
T ss_dssp SCTTCTTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred CCCCCCCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHh
Confidence 99877899999999999999999987543322 233458999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccCCCCCcCCCCCccccccCccccCCCceeecCCchhhHhhhhccCCCccceeeecCCCCCCCCCccC
Q 003970 581 TAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSC 660 (782)
Q Consensus 581 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 660 (782)
||++++..+. ++.+++||+|+||+.+|++||||||++.+||+.|||+++|+..+++.+++ ....|
T Consensus 447 TA~~~~~~~~---------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~------~~~~~ 511 (621)
T 3vta_A 447 TASPMNARFN---------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG------DYSAC 511 (621)
T ss_dssp TCBCCCTTTC---------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------
T ss_pred cCCcccccCC---------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec------ccccc
Confidence 9998775443 45778999999999999999999999999999999999999999999998 67888
Q ss_pred CCCCCCCCCCCCcCeEEEe---ecCceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEE
Q 003970 661 PQAHKIPNSFINYPSITVS---NLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLK 737 (782)
Q Consensus 661 ~~~~~~~~~~ln~ps~~~~---~~~~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~ 737 (782)
+........+||||||++. ++..+++|+|||||||.. ..+|+++++.|+|++|+|+|++|+|++.+|+++|+|+|+
T Consensus 512 ~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~-~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~ 590 (621)
T 3vta_A 512 TSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQ-ASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR 590 (621)
T ss_dssp ------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSS-CEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEE
T ss_pred CCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCC-CeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEE
Confidence 8755435689999999985 455789999999999988 999999999999999999999999998899999999998
Q ss_pred ecccCCCceEEEEEEEEcCceEEEeEEEEEE
Q 003970 738 PLKMSQGRFDFGQIVWSDGFHYVRSPLVVFV 768 (782)
Q Consensus 738 ~~~~~~~~~~~G~~~~~~~~~~v~~P~~~~~ 768 (782)
. ..++.|+||+|+|+|++|.||+||+|+.
T Consensus 591 ~--~~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 591 G--SIKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp E--CCCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred e--cCCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 5 4678899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-82 Score=770.27 Aligned_cols=541 Identities=22% Similarity=0.277 Sum_probs=426.7
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcC---------CCCcccCcceeeeEecc
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKF---------DPQKACNRKLIGARYYV 193 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f---------~~~~~~n~kiig~~~~~ 193 (782)
+++.+|..+.+|+||+|||||||||++||+|.+. ..|++.|..+..| .....||+|++++++|.
T Consensus 5 ~~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~-------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~ 77 (926)
T 1xf1_A 5 QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT-------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYS 77 (926)
T ss_dssp CCHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC-------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESC
T ss_pred ccHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC-------CCCcccccchhhhcccccccCcccccccCcccceeeccc
Confidence 5677999999999999999999999999999843 3577777543222 11158999999999886
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHH
Q 003970 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEA 273 (782)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~ 273 (782)
++. ...|..||||||||||||+...+.+. .+.+.||||+|+|++||+|++.+. .+..+
T Consensus 78 ~~~----------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~ 135 (926)
T 1xf1_A 78 KDG----------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGL--ADYAR 135 (926)
T ss_dssp CCS----------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCH--HHHHH
T ss_pred cCC----------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCC--CCcHH
Confidence 531 12288999999999999987554332 245799999999999999987642 25667
Q ss_pred HHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCC-------------CCCcccC-
Q 003970 274 DILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPE-------------PSLVQNV- 339 (782)
Q Consensus 274 ~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~~- 339 (782)
++++||+||+++|+||||||||..........+.+..++.+|.++|++||+||||+|+. ..++.++
T Consensus 136 ~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA 215 (926)
T 1xf1_A 136 NYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPA 215 (926)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCT
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcc
Confidence 89999999999999999999998742123455678888999999999999999999962 3445555
Q ss_pred -CCceEEecccccCcccceeEEe-CCccEEEeeeeec-----ccceeeEEEccccccCCccccCCCCCCCCCceEEEEee
Q 003970 340 -APWSICVAASSIDRTFPTEIVV-NSDFSIVGESFIS-----TEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFS 412 (782)
Q Consensus 340 -ap~vitVgAs~~d~~~~~~~~~-~~~~~~~g~~~~~-----~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~ 412 (782)
+||+|+|||++.++.+...+.+ +++....+.++.. ....+|+++.+. .|.+..+ .+++|||++|+|
T Consensus 216 ~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-----g~~~~~~--~~v~Gkivl~~r 288 (926)
T 1xf1_A 216 AADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-----GTKEDDF--KDVKGKIALIER 288 (926)
T ss_dssp TTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-----SCSTTTT--TTCTTSEEEEEC
T ss_pred cCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-----CCCccch--hhcCCeEEEEEC
Confidence 7999999999999999988887 5655554444432 122388998764 4776655 689999999999
Q ss_pred CCCCccHHHHHHHHHHcCceEEEEecCCC----ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCC
Q 003970 413 TMGSVKTEEAEAAAKKANASGLIFAEPMT----ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKV 488 (782)
Q Consensus 413 g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 488 (782)
+.|. +.+|..+++++||+++|++|+.. .......++|+.+++..++..|+. ....++++..........
T Consensus 289 g~~~--~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~-----~~~~ti~~~~~~~~~~~~ 361 (926)
T 1xf1_A 289 GDID--FKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD-----NPQKTITFNATPKVLPTA 361 (926)
T ss_dssp CSSC--HHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH-----CSSCEEEECSSCEEEECS
T ss_pred CCCC--HHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh-----CCceEEEecccceecccC
Confidence 9875 99999999999999999999864 123456799999999999988774 223344444333334455
Q ss_pred CCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHH----
Q 003970 489 PAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS---- 564 (782)
Q Consensus 489 ~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q---- 564 (782)
..+.++.||||||+. ++++||||+|||++|+++++++ .|..+||||||||||||++|||+|
T Consensus 362 ~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~ 426 (926)
T 1xf1_A 362 SGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYET 426 (926)
T ss_dssp SCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcceeccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhc
Confidence 678999999999994 8999999999999999999875 899999999999999999999964
Q ss_pred hCCCCCHHH----HHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCCceeecCCchhhHhhhhccCCC
Q 003970 565 AHPNWSPAA----IRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYT 640 (782)
Q Consensus 565 ~~P~lsp~~----Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~~~~~~~~~~~~~ 640 (782)
.||+|+|+| ||++||+||++++..+ ....+++++||+|+||+.+|++|.+ |+|..+++
T Consensus 427 ~~P~~sp~~~~~~Iks~L~~TA~~~~~~~-------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~ 488 (926)
T 1xf1_A 427 QYPDMTPSERLDLAKKVLMSSATALYDED-------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNT 488 (926)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHSBCCEEGG-------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSS
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCcccCC-------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCC
Confidence 599999997 9999999999875431 1224578899999999999999854 56766542
Q ss_pred ccceeeecCCCCCCCCCccCCCCCCCCCCCCCcCeEEEeecCceEEEEEEEEecCCC-CCeEEEEEEeC--CCccEEEEE
Q 003970 641 QDQINKIFLPSPDETERTSCPQAHKIPNSFINYPSITVSNLQSTMTIKRTVKNVGQK-KNAIYFASVVK--PGGVEVVVW 717 (782)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~~~~~~~~rtvtnv~~~-~~~ty~~~~~~--p~g~~v~v~ 717 (782)
.. +|.+.++..+.+++|||||+|.. ...+|++++.. |.+..++|+
T Consensus 489 ~~--------------------------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~ 536 (926)
T 1xf1_A 489 SS--------------------------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALA 536 (926)
T ss_dssp CS--------------------------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEE
T ss_pred cc--------------------------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEec
Confidence 21 34455555678999999999974 14678887765 778899999
Q ss_pred cceeEeccC-------CeEEEEEEEEEecc--------cCCCceEEEEEEEE--cCceE-EEeEEEEEEcCC
Q 003970 718 PRVLVFSWF-------KEEVSYYVSLKPLK--------MSQGRFDFGQIVWS--DGFHY-VRSPLVVFVNNT 771 (782)
Q Consensus 718 p~~~~~~~~-------g~~~~~~v~~~~~~--------~~~~~~~~G~~~~~--~~~~~-v~~P~~~~~~~~ 771 (782)
|..|.|... ||+++|+|+|+... ++++.|+||+|+|+ ++.|. ||+||+++..+-
T Consensus 537 p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~~ 608 (926)
T 1xf1_A 537 PKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDF 608 (926)
T ss_dssp EEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESCG
T ss_pred cceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecCc
Confidence 987766544 99999999999741 34667899999999 56564 999999999875
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-60 Score=543.50 Aligned_cols=365 Identities=30% Similarity=0.411 Sum_probs=288.0
Q ss_pred CCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHH-----------hcCc
Q 003970 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASL-----------AEME 94 (782)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L-----------~~~p 94 (782)
.+..|||.|++.. ..+...++++.+ ..++.++|+ .|+||+++++.+++++| +++|
T Consensus 34 ~~~~~iV~~~~~~------~~~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 99 (539)
T 3afg_A 34 QEVSTIIMFDNQA------DKEKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLS 99 (539)
T ss_dssp CEEEEEEEESSHH------HHHHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCT
T ss_pred CceEEEEEECCCC------CHHHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCC
Confidence 3457999999742 122223344433 245889997 79999999999999999 8899
Q ss_pred CeEEEEecceeeccccccccccccc---ccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceee
Q 003970 95 EVISIFESQVLKLHTTRSWDFMGLI---LDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCV 171 (782)
Q Consensus 95 ~V~~V~~~~~~~~~~~~s~~~~gl~---~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~ 171 (782)
+|++|++++.+++.... .++. ..+++..+|..+++|+||+|||||||||++||+|.+
T Consensus 100 ~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~---------------- 159 (539)
T 3afg_A 100 GVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG---------------- 159 (539)
T ss_dssp TEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT----------------
T ss_pred CeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC----------------
Confidence 99999999998875422 1111 112567899999999999999999999999999952
Q ss_pred ccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecC
Q 003970 172 RGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAP 251 (782)
Q Consensus 172 ~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP 251 (782)
++++.++|..+ ...+.|++||||||||||||+.... .+.+.||||
T Consensus 160 -------------~i~~~~d~~~~---------------~~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp 204 (539)
T 3afg_A 160 -------------KVIGWVDFVNG---------------KTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAP 204 (539)
T ss_dssp -------------TEEEEEETTTC---------------CSSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCT
T ss_pred -------------CEeeeEECCCC---------------CCCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECC
Confidence 34555555432 1256789999999999999975321 234689999
Q ss_pred CCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc----CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecC
Q 003970 252 RARLAVYKICWGKDSDGKCTEADILAAFDDALHD----GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGG 327 (782)
Q Consensus 252 ~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 327 (782)
+|+|+++|++++.+ .+..+++++||+||+++ |++|||||||... .....+.+..++.++.++|++||+|||
T Consensus 205 ~A~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~--~~~~~~~l~~ai~~a~~~GvlvV~AAG 279 (539)
T 3afg_A 205 GAKLVGIKVLNGQG---SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ--SSDGTDSLSQAVNNAWDAGLVVVVAAG 279 (539)
T ss_dssp TCEEEEEECSCTTS---EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS--CCCSCSHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEEEeecCCC---CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC--CCccchHHHHHHHHHHhcCCEEEEECC
Confidence 99999999998776 57889999999999975 9999999999875 334567888899999999999999999
Q ss_pred CCCCCCCCccc--CCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCc
Q 003970 328 NDGPEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATG 405 (782)
Q Consensus 328 N~G~~~~~~~~--~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~g 405 (782)
|+|+...++.. ..+++|+|||++.
T Consensus 280 N~g~~~~~~~~Pa~~~~vitVgA~~~------------------------------------------------------ 305 (539)
T 3afg_A 280 NSGPNKYTVGSPAAASKVITVGAVDK------------------------------------------------------ 305 (539)
T ss_dssp SCCSSSSCCCTTTTCSSSEEEEEECT------------------------------------------------------
T ss_pred CCCCCCCcccCCccCCceEEEeeecC------------------------------------------------------
Confidence 99986555443 4689999998531
Q ss_pred eEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCcccc
Q 003970 406 RVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSI 485 (782)
Q Consensus 406 kiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~ 485 (782)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh
Q 003970 486 GKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA 565 (782)
Q Consensus 486 ~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 565 (782)
.+.+++||||||+. ++++||||+|||++|+++++...... +.....|..++|||||||||||++|||+|+
T Consensus 306 ----~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 375 (539)
T 3afg_A 306 ----YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMATPHVAGIAALLLQA 375 (539)
T ss_dssp ----TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ----CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCC----CCCcccccccCchHHHHHHHHHHHHHHHHH
Confidence 23578999999995 79999999999999999997642111 111226999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 566 HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 566 ~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
||+|+|++||++|++||+++...+ .++..||+|+||+.+|++.
T Consensus 376 ~p~~s~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 376 HPSWTPDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp CTTCCHHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTG
T ss_pred CCCCCHHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhh
Confidence 999999999999999999765321 2456899999999999985
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-58 Score=507.76 Aligned_cols=345 Identities=24% Similarity=0.303 Sum_probs=275.3
Q ss_pred CceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecceee
Q 003970 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLK 106 (782)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 106 (782)
+.+|||+|++... ..+++++. ..++.++|. .+++|+++++++++++|+++|+|++|++++.++
T Consensus 2 ~~~~iV~~~~~~~---------~~~~~~~~-------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~ 64 (395)
T 2z2z_A 2 TIRVIVSVDKAKF---------NPHEVLGI-------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 64 (395)
T ss_dssp EEEEEEEECTTTC---------CHHHHHHT-------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEE
T ss_pred cEEEEEEECCCcc---------HHHHHHHc-------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeec
Confidence 4689999998621 12233332 245889998 599999999999999999999999999999987
Q ss_pred ccccccc-----------ccccccccCCCCccCCCCCCCCC--cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeecc
Q 003970 107 LHTTRSW-----------DFMGLILDNTGEVTPVQLAYGDD--IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRG 173 (782)
Q Consensus 107 ~~~~~s~-----------~~~gl~~~~~~~~~~~~~~~G~g--V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g 173 (782)
++....+ ..+++... +++.+|..+ +|+| |+|||||||||++||+|.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~w~~~~i-~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~----------------- 125 (395)
T 2z2z_A 65 LLGKPSWLGGGSTQPAQTIPWGIERV-KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN----------------- 125 (395)
T ss_dssp ECCEECC------CCSCCCCHHHHHT-TCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG-----------------
T ss_pred ccCCCCcccccccCccccCCcchhhc-CHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc-----------------
Confidence 6542211 12244433 678899988 9999 99999999999999999642
Q ss_pred CcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCC
Q 003970 174 EKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253 (782)
Q Consensus 174 ~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A 253 (782)
++..+.|..+... .+..++.|..||||||||||+|.. ++ ..+.||||+|
T Consensus 126 ------------~~~~~~~~~~~~~----------~~~~~~~d~~gHGT~vAgiia~~~-n~--------~g~~GvAp~a 174 (395)
T 2z2z_A 126 ------------IAWCVSTLRGKVS----------TKLRDCADQNGHGTHVIGTIAALN-ND--------IGVVGVAPGV 174 (395)
T ss_dssp ------------EEEEEECGGGCCB----------CCHHHHBCSSSHHHHHHHHHHCCC-SS--------SSCCCSSTTC
T ss_pred ------------cccCccccCCccc----------CCCCCCCCCCCCHHHHHHHHHeec-CC--------CceEEECCCC
Confidence 2223333221100 001124678999999999999973 21 1258999999
Q ss_pred eEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc--------------------CCcEEEecccCCCCCCCCccChHHHHHH
Q 003970 254 RLAVYKICWGKDSDGKCTEADILAAFDDALHD--------------------GVDVISASFGESPPLRPFFASNADIGSF 313 (782)
Q Consensus 254 ~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~~a~~ 313 (782)
+|+.+|++++.+ .+..+++++||+||+++ +++|||||||... ....+..++.
T Consensus 175 ~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~ 246 (395)
T 2z2z_A 175 QIYSVRVLDARG---SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA-----DDSYLYDMII 246 (395)
T ss_dssp EEEEEECSCTTS---EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC-----CCHHHHHHHH
T ss_pred EEEEEEEecCCC---CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC-----CCHHHHHHHH
Confidence 999999998776 57889999999999988 9999999999874 2346777788
Q ss_pred hhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCcc
Q 003970 314 NAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGIC 393 (782)
Q Consensus 314 ~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c 393 (782)
++.++|++||+||||+|......+...+++|+|||++.
T Consensus 247 ~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------ 284 (395)
T 2z2z_A 247 QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------ 284 (395)
T ss_dssp HHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT------------------------------------------
T ss_pred HHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC------------------------------------------
Confidence 88999999999999999876667777899999999541
Q ss_pred ccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCC
Q 003970 394 KCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRL 473 (782)
Q Consensus 394 ~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 473 (782)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhh
Q 003970 474 PIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCP 553 (782)
Q Consensus 474 ~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 553 (782)
.+.+++||+||| +|+|||++|+++++.+ .|..++|||||||
T Consensus 285 ----------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~~-------------~y~~~sGTS~AaP 325 (395)
T 2z2z_A 285 ----------------NDNIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATP 325 (395)
T ss_dssp ----------------TSCBCTTSCSSC----------SEEEECSSEEEEETTT-------------EEEEEESHHHHHH
T ss_pred ----------------CCCCCcccCCCC----------CEEeCCCCeeeecCCC-------------ceEecCCHHHHHH
Confidence 345789999996 5799999999999875 8999999999999
Q ss_pred HHHHHHHHHHHhCC-------------CCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 554 HVSGVVALIKSAHP-------------NWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 554 ~VAG~aALl~q~~P-------------~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
||||++|||+|++| .|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 326 ~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~------------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 326 HVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT------------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS------------SSBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC------------CCCCCccCceeCHHHHHHH
Confidence 99999999999999 999999999999999976532 2456899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-55 Score=500.17 Aligned_cols=361 Identities=19% Similarity=0.226 Sum_probs=273.8
Q ss_pred CCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhc-CcCeEEEEecce
Q 003970 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAE-MEEVISIFESQV 104 (782)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~-~p~V~~V~~~~~ 104 (782)
.++.|||++++. ....+++++. ..++.++|. .|++|+++++++++++|++ +|+|++|++++.
T Consensus 43 ~~~~yiv~~~~~---------~~~~~~~~~~-------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~ 105 (471)
T 3t41_A 43 EELYYSVEYKNT---------ATFNKLVKKK-------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCS 105 (471)
T ss_dssp CCEEEEEEESCH---------HHHHHHHHHH-------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCS
T ss_pred CceEEEEEcCCH---------HHHHHHHHhC-------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecce
Confidence 346899988763 1233333332 245778886 5999999999999999999 999999999998
Q ss_pred eeccccccc----------ccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccC
Q 003970 105 LKLHTTRSW----------DFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGE 174 (782)
Q Consensus 105 ~~~~~~~s~----------~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~ 174 (782)
+++...... ..+++........+|..+.+|+||+|||||||||++||+|.+.. |.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~--------~~~~~---- 173 (471)
T 3t41_A 106 TCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF--------STDSK---- 173 (471)
T ss_dssp SCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB--------CTTCE----
T ss_pred eccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc--------ccCCc----
Confidence 877543221 11233333123468999999999999999999999999997542 11100
Q ss_pred cCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCe
Q 003970 175 KFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRAR 254 (782)
Q Consensus 175 ~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~ 254 (782)
.++....|...... ...+...+.|..||||||||||+|+. .+.||||+|+
T Consensus 174 ----------~~~~~~~~~~~~~~--------~~~~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~ 223 (471)
T 3t41_A 174 ----------NLVPLNGFRGTEPE--------ETGDVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNK 223 (471)
T ss_dssp ----------ECCCTTCGGGCCTT--------CCCCTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSC
T ss_pred ----------ccccCCCccCCCcc--------cCCCCCCCcCCCCccchhhheeecCC------------ceeEECCCCe
Confidence 01111111111000 01122356789999999999999863 2589999999
Q ss_pred EEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccCCCC-----CCC------CccChHHHHHHhhhccCceEE
Q 003970 255 LAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPP-----LRP------FFASNADIGSFNAMQHGVTVV 323 (782)
Q Consensus 255 l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~-----~~~------~~~~~~~~a~~~a~~~Gi~vV 323 (782)
|+.+|++++. .+..+++++||+||++++++|||||||.... ... ...+.+..++..+.++|++||
T Consensus 224 l~~~kv~~~~----~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV 299 (471)
T 3t41_A 224 FTMYRVFGSK----KTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVV 299 (471)
T ss_dssp EEEEECCSSS----CCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeccCC----CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEE
Confidence 9999999874 4889999999999999999999999997410 000 123456778888889999999
Q ss_pred EecCCCCCCCCC------------------cccCCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEcc
Q 003970 324 FSGGNDGPEPSL------------------VQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAF 385 (782)
Q Consensus 324 ~AAGN~G~~~~~------------------~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~ 385 (782)
+||||+|..... .+...+++|+|||++.
T Consensus 300 ~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~---------------------------------- 345 (471)
T 3t41_A 300 AAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ---------------------------------- 345 (471)
T ss_dssp EECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT----------------------------------
T ss_pred EEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCC----------------------------------
Confidence 999999976432 3445789999998542
Q ss_pred ccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHH
Q 003970 386 TYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRD 465 (782)
Q Consensus 386 ~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~ 465 (782)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce----------------------EEee
Q 003970 466 YLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG----------------------VLAA 523 (782)
Q Consensus 466 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~----------------------I~sa 523 (782)
.+.+++||++||+. |||+|||++ |+++
T Consensus 346 ------------------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~ 394 (471)
T 3t41_A 346 ------------------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTT 394 (471)
T ss_dssp ------------------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEE
T ss_pred ------------------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEec
Confidence 34578999999974 799999987 9999
Q ss_pred cCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHHHhccccCCCCCCccccCCCCCcCC
Q 003970 524 WPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP-NWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSD 602 (782)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 602 (782)
++.+ .|..++|||||||||||++|||+|++| .++|++||++|++||.+... .+
T Consensus 395 ~~~~-------------~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------~~ 448 (471)
T 3t41_A 395 ANNG-------------RYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------KP 448 (471)
T ss_dssp CTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------CC
T ss_pred CCCC-------------CEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------CC
Confidence 8875 899999999999999999999999999 89999999999999986532 25
Q ss_pred CCCccccccCccccCCCc
Q 003970 603 PFDIGAGHINPMKAMDPG 620 (782)
Q Consensus 603 ~~~~G~G~vn~~~Al~~g 620 (782)
+..||||+||+.+|++..
T Consensus 449 ~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 449 FSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHTTCBBCHHHHTTTT
T ss_pred cCccccChhCHHHHHHHH
Confidence 568999999999999853
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-55 Score=491.56 Aligned_cols=378 Identities=21% Similarity=0.230 Sum_probs=278.1
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++... +++.+|..+ |+||+|+|||||||++||+|.+.. | .+..++..
T Consensus 7 ~l~~i-~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~~--------~--------------------~~~~~~~~-- 53 (441)
T 1y9z_A 7 GQTFV-GATVLSDSQ--AGNRTICIIDSGYDRSHNDLNANN--------V--------------------TGTNNSGT-- 53 (441)
T ss_dssp HHHHT-TCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTSE--------E--------------------EECCCTTS--
T ss_pred Chhhc-ChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcCc--------c--------------------cCcccCCC--
Confidence 44443 678899865 779999999999999999996431 1 11111000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCC--eEEEEEeeeCCCCCCCCCHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA--RLAVYKICWGKDSDGKCTEAD 274 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A--~l~~~kv~~~~~~~~~~~~~~ 274 (782)
.+...+.|..||||||||||+|..+. ..+.||||+| +|+.+|+++..+ .+..++
T Consensus 54 ------------~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g---~~~~~~ 109 (441)
T 1y9z_A 54 ------------GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG---WGYSSS 109 (441)
T ss_dssp ------------CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE---ECCSSC
T ss_pred ------------CCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCC---CcCHHH
Confidence 01235678899999999999997521 1358999995 999999998765 477889
Q ss_pred HHHHHHHHhhc-CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCc
Q 003970 275 ILAAFDDALHD-GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDR 353 (782)
Q Consensus 275 i~~ai~~a~~~-gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~ 353 (782)
+++||+||+++ |+||||||||... ....+..++.+|.++|++||+||||+|......+...+++|+|||++.+.
T Consensus 110 ~~~ai~~a~~~~g~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~ 184 (441)
T 1y9z_A 110 LVAAIDTCVNSGGANVVTMSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNL 184 (441)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTC
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCC
Confidence 99999999999 9999999999874 12356677888999999999999999987666777789999999998775
Q ss_pred ccceeEEe-------------------CCcc----EEEeeeeeccc-ce-ee-----EEEccc------cccCCccccC-
Q 003970 354 TFPTEIVV-------------------NSDF----SIVGESFISTE-VK-AK-----LVEAFT------YFADGICKCE- 396 (782)
Q Consensus 354 ~~~~~~~~-------------------~~~~----~~~g~~~~~~~-~~-~~-----lv~~~~------~~~~~~c~~~- 396 (782)
........ +++. .+.|.+++... ++ .+ +.+... ......|...
T Consensus 185 ~~~~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~ 264 (441)
T 1y9z_A 185 DHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNG 264 (441)
T ss_dssp CBCTTSCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEET
T ss_pred CCCccccCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhcccccc
Confidence 43221111 1211 22233332111 00 00 111110 0122458754
Q ss_pred -CCCCCCCCceEEEEeeCCC---CccHHHHHHHHHHcCceEEEEecCCC--c-------cccccccccEEEEehhhHHHH
Q 003970 397 -NWMGRKATGRVVLCFSTMG---SVKTEEAEAAAKKANASGLIFAEPMT--E-------LIAEVDIIPTVRIDIAQGTQL 463 (782)
Q Consensus 397 -~~~~~~~~gkiv~~~~g~~---~~~~~~k~~~~~~~Ga~g~i~~n~~~--~-------~~~~~~~~p~~~i~~~~g~~l 463 (782)
.++..+++|||++|+|+.+ .+.+.+|..+++++||.++|++|+.. . .......+|.+.++..+|..|
T Consensus 265 ~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l 344 (441)
T 1y9z_A 265 TSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLAL 344 (441)
T ss_dssp TEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHH
T ss_pred ccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHH
Confidence 5678899999999999976 25688999999999999999998864 1 123456899999999999999
Q ss_pred HHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCcccee
Q 003970 464 RDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWN 543 (782)
Q Consensus 464 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 543 (782)
++|+. .+ . .+ ++... ..|.
T Consensus 345 ~~~~~-~~----~-----------------------------------t~--------~~~~~-------------~~y~ 363 (441)
T 1y9z_A 345 KAKLG-QS----T-----------------------------------TV--------SNQGN-------------QDYE 363 (441)
T ss_dssp HTTTT-SE----E-----------------------------------EE--------EEEEE-------------ESEE
T ss_pred HHHhc-CC----c-----------------------------------cc--------ccccC-------------CCce
Confidence 88776 10 0 11 11111 2899
Q ss_pred eeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCCceee
Q 003970 544 FQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIY 623 (782)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~ 623 (782)
.+||||||||||||++|||+|+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|+
T Consensus 364 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~------ 425 (441)
T 1y9z_A 364 YYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK------ 425 (441)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHH------
T ss_pred eecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHH------
Confidence 9999999999999999999999999999999999999999876533 3457999999999995
Q ss_pred cCCchhhHhhhhccCCC
Q 003970 624 DLKPTDYIVFLRNIGYT 640 (782)
Q Consensus 624 d~~~~~~~~~~~~~~~~ 640 (782)
||+.|+|+++++
T Consensus 426 -----~~~~~lc~~~~~ 437 (441)
T 1y9z_A 426 -----AYLDESCTGPTD 437 (441)
T ss_dssp -----HHHHHCTTCC--
T ss_pred -----HHHHhhhcCCCC
Confidence 689999998853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-56 Score=512.85 Aligned_cols=339 Identities=21% Similarity=0.214 Sum_probs=54.7
Q ss_pred eEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecceeecc
Q 003970 29 VYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLKLH 108 (782)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 108 (782)
+|||+||+... ....+.+.+.+....... ....++.+.|++.|+||+++++++++++|+++|+|++|++++.++..
T Consensus 77 ~YIV~lk~~~~---~~~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~ 152 (692)
T 2p4e_P 77 TYVVVLKEETH---LSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ 152 (692)
T ss_dssp EEEEEECTTCC---HHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC
T ss_pred cEEEEECCCCC---HHHHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC
Confidence 89999998642 222223333333322110 11246899999999999999999999999999999999999988652
Q ss_pred cccccccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceee
Q 003970 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIG 188 (782)
Q Consensus 109 ~~~s~~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig 188 (782)
...|.+..+.........|..+.+|+||+|+|||||||++||+|.+.. .|. +|+.
T Consensus 153 -~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~-------~~~-------~~~~---------- 207 (692)
T 2p4e_P 153 -SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------MVT-------DFEN---------- 207 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCce-------Eec-------cccc----------
Confidence 234543333221112237888889999999999999999999997542 010 0110
Q ss_pred eEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCC
Q 003970 189 ARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDG 268 (782)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~ 268 (782)
+.+.. + ......+.|.+||||||||||+|+. .||||+|+|+++|++++.+
T Consensus 208 ---~~d~d----g------~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G--- 257 (692)
T 2p4e_P 208 ---VPEED----G------TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQG--- 257 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccCCC----C------CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCC---
Confidence 00000 0 0001246789999999999999873 6999999999999998776
Q ss_pred CCCHHHHHHHHHHHhhc------CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc-ccCCC
Q 003970 269 KCTEADILAAFDDALHD------GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV-QNVAP 341 (782)
Q Consensus 269 ~~~~~~i~~ai~~a~~~------gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~ap 341 (782)
.++.+++++||+|++++ +++|||||||+.. ...+..++.++.++|++||+||||+|...... +...|
T Consensus 258 ~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~ 331 (692)
T 2p4e_P 258 KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAP 331 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCC
Confidence 57888999999999986 8999999999763 24556667788899999999999999765333 45579
Q ss_pred ceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHH
Q 003970 342 WSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEE 421 (782)
Q Consensus 342 ~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~ 421 (782)
++|+|||++.+...
T Consensus 332 ~vItVGA~d~~~~~------------------------------------------------------------------ 345 (692)
T 2p4e_P 332 EVITVGATNAQDQP------------------------------------------------------------------ 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEcCCCCc------------------------------------------------------------------
Confidence 99999996532100
Q ss_pred HHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCC
Q 003970 422 AEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGP 501 (782)
Q Consensus 422 k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 501 (782)
...-+.||+|||
T Consensus 346 --------------------------------------------------------------------a~~ss~fSn~G~ 357 (692)
T 2p4e_P 346 --------------------------------------------------------------------VTLGTLGTNFGR 357 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------cccccccCCCCC
Confidence 000123899998
Q ss_pred CCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 502 SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 502 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
. |||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|++||++|++|
T Consensus 358 ~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~t 418 (692)
T 2p4e_P 358 C--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHF 418 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 4 799999999999998642 178999999999999999999999999999999999999999
Q ss_pred cccC
Q 003970 582 AYTR 585 (782)
Q Consensus 582 A~~~ 585 (782)
|.+.
T Consensus 419 A~~~ 422 (692)
T 2p4e_P 419 SAKD 422 (692)
T ss_dssp ----
T ss_pred cccc
Confidence 9863
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-53 Score=491.41 Aligned_cols=378 Identities=23% Similarity=0.224 Sum_probs=273.9
Q ss_pred CCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCH---H-HHHHHhc--CcCeEEE
Q 003970 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNS---S-QAASLAE--MEEVISI 99 (782)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~---~-~~~~L~~--~p~V~~V 99 (782)
.+.+|||+|++.. ...++++.. ..++.+++. .+++++++++. + .+++|++ +|+|++|
T Consensus 30 ~~~~~IV~~k~~~---------~~~~~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~v 92 (671)
T 1r6v_A 30 TEGKILVGYNDRS---------EVDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYV 92 (671)
T ss_dssp CTTEEEEEESSHH---------HHHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEE
T ss_pred CCccEEEEECCCc---------CHHHHHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEE
Confidence 4679999999741 223333332 134667776 78999999864 3 3566764 8999999
Q ss_pred Eecceeeccccc---------------------------ccccccccccCCCCcc-CCCCCCCCCcEEEEeccccCCCCC
Q 003970 100 FESQVLKLHTTR---------------------------SWDFMGLILDNTGEVT-PVQLAYGDDIVVGIFDTGVWPESE 151 (782)
Q Consensus 100 ~~~~~~~~~~~~---------------------------s~~~~gl~~~~~~~~~-~~~~~~G~gV~VgVIDtGId~~Hp 151 (782)
+|+..+++.... ....+++... +++.+ |.. .+|+||+|||||||||++||
T Consensus 93 epd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I-~~~~a~w~~-~tG~gV~VAVIDTGVd~~Hp 170 (671)
T 1r6v_A 93 EPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI-GVTQQLWEE-ASGTNIIVAVVDTGVDGTHP 170 (671)
T ss_dssp ECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT-TCCHHHHHH-CSCTTCEEEEEESCCBTTSG
T ss_pred ecCeEEEeccccccCcccccccccccccccccccccccccccCCchhcc-CCchhhhhc-cCCCCCEEEEEeCCCCCCCc
Confidence 999876543100 0011233333 67777 887 89999999999999999999
Q ss_pred CCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccc
Q 003970 152 SFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGS 231 (782)
Q Consensus 152 ~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~ 231 (782)
+|.+.. +. |.+++.+... . ...+..|.+||||||||||||.
T Consensus 171 dL~~~~--------~~--------------------g~~~~~~~~~-p----------~~~d~~d~~gHGThVAGiIAa~ 211 (671)
T 1r6v_A 171 DLEGQV--------IA--------------------GYRPAFDEEL-P----------AGTDSSYGGSAGTHVAGTIAAK 211 (671)
T ss_dssp GGTTTB--------CC--------------------EEEGGGTEEE-C----------TTCBCCTTCSHHHHHHHHHHCC
T ss_pred cccccE--------Ee--------------------cccccCCCcC-C----------CCCCCccCCCcchhhhhhhhcc
Confidence 997532 11 1111111000 0 0123446789999999999997
Q ss_pred cccCCcccccCCcceeeecCCCeEEEEEeeeCC---CCCCCCCHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChH
Q 003970 232 IAKNAGFFGLGRGIARGGAPRARLAVYKICWGK---DSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNA 308 (782)
Q Consensus 232 ~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~---~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~ 308 (782)
. ++ ..+.||||+|+|+.+|+++.. +..+....+.+++||+||+++|++|||||||... +...+
T Consensus 212 ~-ng--------~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-----~s~~l 277 (671)
T 1r6v_A 212 K-DG--------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-----YSYTM 277 (671)
T ss_dssp C-SS--------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-----CCHHH
T ss_pred C-CC--------CceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-----CCHHH
Confidence 4 21 235899999999999999761 1111345678999999999999999999999863 34567
Q ss_pred HHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEcccc
Q 003970 309 DIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTY 387 (782)
Q Consensus 309 ~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~ 387 (782)
..++.+|.++|+++|+||||+|... ...+...|++|+|||++.+..
T Consensus 278 ~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~--------------------------------- 324 (671)
T 1r6v_A 278 KEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG--------------------------------- 324 (671)
T ss_dssp HHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT---------------------------------
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC---------------------------------
Confidence 7888889999999999999999764 344556799999999542110
Q ss_pred ccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHH
Q 003970 388 FADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYL 467 (782)
Q Consensus 388 ~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 467 (782)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCC-----CCCCCCccce
Q 003970 468 AQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTL-----LPSDGRSVKW 542 (782)
Q Consensus 468 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y 542 (782)
...+++||++||. +||+|||++|+++++....... .........|
T Consensus 325 ----------------------~~~~a~fSn~G~~--------vdv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y 374 (671)
T 1r6v_A 325 ----------------------TFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374 (671)
T ss_dssp ----------------------EEEECSSSCCCTT--------EEEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCE
T ss_pred ----------------------ceeeccccCCCCC--------eeEEecCCCEEeecCCCCccccccccccccccCCCce
Confidence 1136899999997 6999999999999986432110 0011223479
Q ss_pred eeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCCcee
Q 003970 543 NFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLI 622 (782)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv 622 (782)
..++|||||||||||++|||+|++|+|+|.+||++|++||+++...+ .+..+|||+||+.+|++..|.
T Consensus 375 ~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g------------~d~~~G~G~vna~~Al~~~l~ 442 (671)
T 1r6v_A 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTTTBTCBCCHHHHHHCCCC
T ss_pred EEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC------------CCCCcccceeCHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999765432 345899999999999998777
Q ss_pred ecCCchhh
Q 003970 623 YDLKPTDY 630 (782)
Q Consensus 623 ~d~~~~~~ 630 (782)
.+....+|
T Consensus 443 ~~~~~~~~ 450 (671)
T 1r6v_A 443 TQGGVEEF 450 (671)
T ss_dssp SSSEEEEE
T ss_pred CCCCccce
Confidence 66554444
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-51 Score=430.98 Aligned_cols=263 Identities=29% Similarity=0.371 Sum_probs=219.9
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++... +++.+|..+++|+||+|+|||||| .+||+|+. .+.+.|..+
T Consensus 7 ~l~~i-~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~-------------------------------~~~~~~~~~- 52 (269)
T 1gci_A 7 GISRV-QAPAAHNRGLTGSGVKVAVLDTGI-STHPDLNI-------------------------------RGGASFVPG- 52 (269)
T ss_dssp HHHHT-THHHHHHTTCSCTTCEEEEEESCC-CCCTTCCE-------------------------------EEEEECSTT-
T ss_pred Chhhc-CcHHHHhcCCCCCCCEEEEECCCC-CCCHhhcc-------------------------------cCCcccCCC-
Confidence 44443 677899999999999999999999 89999941 111222211
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
...+.|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .+..++++
T Consensus 53 --------------~~~~~d~~gHGT~vAgiia~~~~---------~~~~~GvAp~a~l~~~~v~~~~g---~~~~~~~~ 106 (269)
T 1gci_A 53 --------------EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG---SGSVSSIA 106 (269)
T ss_dssp --------------CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS---CBCHHHHH
T ss_pred --------------CCCCCCCCCChHHHHHHHhcCcC---------CCCcEEeCCCCEEEEEEeECCCC---CcCHHHHH
Confidence 12356789999999999999731 12358999999999999998776 57889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccc
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~ 356 (782)
+||+||++++++|||||||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.
T Consensus 107 ~ai~~a~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----- 176 (269)
T 1gci_A 107 QGLEWAGNNGMHVANLSLGSPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ----- 176 (269)
T ss_dssp HHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-----
Confidence 9999999999999999999874 235677788889999999999999999876666667899999998541
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
.+.++.||++||. |||+||
T Consensus 177 -----------------------------------------------------~~~~~~~S~~G~~--------~di~AP 195 (269)
T 1gci_A 177 -----------------------------------------------------NNNRASFSQYGAG--------LDIVAP 195 (269)
T ss_dssp -----------------------------------------------------TSCBCTTCCCSTT--------EEEEEE
T ss_pred -----------------------------------------------------CCCCCCCCCCCCC--------cceEec
Confidence 2356899999996 699999
Q ss_pred CceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 003970 517 GIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596 (782)
Q Consensus 517 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~ 596 (782)
|++|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 196 G~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------- 252 (269)
T 1gci_A 196 GVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------- 252 (269)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------
T ss_pred CCCeEeecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------
Confidence 99999999865 8999999999999999999999999999999999999999999753
Q ss_pred CCCcCCCCCccccccCccccCC
Q 003970 597 SMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 597 ~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
++..||||+||+.+|++
T Consensus 253 -----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCccCHHHHcC
Confidence 34579999999999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=431.23 Aligned_cols=266 Identities=26% Similarity=0.297 Sum_probs=215.3
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++... +++.+|..+..|+||+|+|||||||++||+|.+. ++..+.|.+.
T Consensus 14 ~l~~i-~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~-----------------------------~~~~~~~~~~- 62 (280)
T 1dbi_A 14 GPQNT-YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYDFVDN- 62 (280)
T ss_dssp TTGGG-THHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEETTTT-
T ss_pred Chhhc-CcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC-----------------------------cccceeccCC-
Confidence 44443 6788999988888999999999999999999632 2333333321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
..++.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ .+..++++
T Consensus 63 --------------~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~ 117 (280)
T 1dbi_A 63 --------------DYDPMDLNNHGTHVAGIAAAETNNAT--------GIAGMAPNTRILAVRALDRNG---SGTLSDIA 117 (280)
T ss_dssp --------------BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSSSCEEEEEECCCTTS---CCCHHHHH
T ss_pred --------------CCCCCCCCCcHHHHHHHHhCcCCCCC--------cceEeCCCCEEEEEEEECCCC---CcCHHHHH
Confidence 12457889999999999999864322 258999999999999998766 57889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccc
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~ 356 (782)
+||+||+++|++|||||||... ....+..++.++.++|+++|+||||+|......+...+++|+|||++.
T Consensus 118 ~ai~~a~~~g~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----- 187 (280)
T 1dbi_A 118 DAIIYAADSGAEVINLSLGCDC-----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----- 187 (280)
T ss_dssp HHHHHHHHTTCSEEEECCSSCC-----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----
T ss_pred HHHHHHHHCCCCEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-----
Confidence 9999999999999999999873 235677788889999999999999999766556667899999998541
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
.+.++.||++||. |||+||
T Consensus 188 -----------------------------------------------------~~~~~~~S~~G~~--------~dv~Ap 206 (280)
T 1dbi_A 188 -----------------------------------------------------YDRLASFSNYGTW--------VDVVAP 206 (280)
T ss_dssp -----------------------------------------------------TSCBCTTBCCSTT--------CCEEEE
T ss_pred -----------------------------------------------------CCCcCCCCCCCCC--------ceEEEe
Confidence 2357899999986 699999
Q ss_pred CceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 003970 517 GIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596 (782)
Q Consensus 517 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~ 596 (782)
|++|+++++.+ .|..++|||||||||||++|||++ |.+++.+||++|++||+++..
T Consensus 207 G~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~--------- 262 (280)
T 1dbi_A 207 GVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG--------- 262 (280)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT---------
T ss_pred cCCeEeecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC---------
Confidence 99999999865 899999999999999999999987 899999999999999997642
Q ss_pred CCCcCCCCCccccccCccccCC
Q 003970 597 SMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 597 ~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
....||+|+||+.+|++
T Consensus 263 -----~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcccCCEECHHHHhc
Confidence 12479999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=434.07 Aligned_cols=264 Identities=31% Similarity=0.396 Sum_probs=218.4
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++... +++.+|..+++|+||+|+|||||||++||+|+. ...+.|..+
T Consensus 7 ~l~~i-~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-------------------------------~~g~~~~~~- 53 (274)
T 1r0r_E 7 GIPLI-KADKVQAQGFKGANVKVAVLDTGIQASHPDLNV-------------------------------VGGASFVAG- 53 (274)
T ss_dssp HHHHT-THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECSTT-
T ss_pred chhhc-CCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHcC-------------------------------CCCccccCC-
Confidence 44443 677899999999999999999999999999941 111222211
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
...+.|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .+..++++
T Consensus 54 --------------~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~i~ 107 (274)
T 1r0r_E 54 --------------EAYNTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSSG---SGSYSGIV 107 (274)
T ss_dssp --------------CCTTCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTTS---EECHHHHH
T ss_pred --------------CCCCCCCCCCHHHHHHHHHccCC---------CCceEEECCCCEEEEEEEECCCC---CccHHHHH
Confidence 11346789999999999999731 12358999999999999998766 57889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC----CCcccCCCceEEecccccC
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP----SLVQNVAPWSICVAASSID 352 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgAs~~d 352 (782)
+||+||++++++|||||||... ....+..++.++.++|+++|+||||+|... ...+...+++|+|||++.
T Consensus 108 ~ai~~a~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~- 181 (274)
T 1r0r_E 108 SGIEWATTNGMDVINMSLGGAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS- 181 (274)
T ss_dssp HHHHHHHHTTCSEEEECEEBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-
T ss_pred HHHHHHHHcCCCEEEeCCCCCC-----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC-
Confidence 9999999999999999999874 235677888889999999999999999753 233445689999998531
Q ss_pred cccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCce
Q 003970 353 RTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANAS 432 (782)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~ 432 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccc
Q 003970 433 GLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPD 512 (782)
Q Consensus 433 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 512 (782)
.+.++.||++||. ||
T Consensus 182 ---------------------------------------------------------~~~~~~~S~~G~~--------~d 196 (274)
T 1r0r_E 182 ---------------------------------------------------------NSNRASFSSVGAE--------LE 196 (274)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTT--------EE
T ss_pred ---------------------------------------------------------CCCcCccCCCCCC--------ce
Confidence 2356899999985 79
Q ss_pred eeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcc
Q 003970 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSI 592 (782)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~ 592 (782)
|+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 197 i~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------ 257 (274)
T 1r0r_E 197 VMAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------ 257 (274)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------
T ss_pred EEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC------
Confidence 999999999999875 8999999999999999999999999999999999999999999753
Q ss_pred ccCCCCCcCCCCCccccccCccccCC
Q 003970 593 LAGGSMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
++..||||+||+.+|++
T Consensus 258 ---------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCCcccCccCHHHHhC
Confidence 34589999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-51 Score=432.82 Aligned_cols=266 Identities=31% Similarity=0.389 Sum_probs=219.2
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++... +++.+|..+++|+||+|+|||||||++||+|+.. +.+.|...
T Consensus 7 ~l~~i-~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~-------------------------------~g~~~~~~- 53 (281)
T 1to2_E 7 GVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-------------------------------GGASMVPS- 53 (281)
T ss_dssp HHHHT-THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-------------------------------EEEECCTT-
T ss_pred chhhc-ChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCc-------------------------------CCccccCC-
Confidence 44443 6778999999999999999999999999999521 11122111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
+.....|..||||||||||+|..+ ...+.||||+|+|+.+|++...+ .+..++++
T Consensus 54 -------------~~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~ 108 (281)
T 1to2_E 54 -------------ETNPFQDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADG---SGQYSWII 108 (281)
T ss_dssp -------------CCCTTCCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTS---EECHHHHH
T ss_pred -------------CCCCCCCCCCcHHHHHHHHhccCC---------CCcceeeCCCCEEEEEEEeCCCC---CccHHHHH
Confidence 111235789999999999999731 12358999999999999998765 57889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC----CCcccCCCceEEecccccC
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP----SLVQNVAPWSICVAASSID 352 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVgAs~~d 352 (782)
++|+|+++++++|||||||... ....+..++.++.++|++||+||||+|... ...+...|++|+|||++.
T Consensus 109 ~ai~~a~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~- 182 (281)
T 1to2_E 109 NGIEWAIANNMDVINMSLGGPS-----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS- 182 (281)
T ss_dssp HHHHHHHHTTCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-
T ss_pred HHHHHHHHCCCcEEEECCcCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC-
Confidence 9999999999999999999874 235677788889999999999999999752 233445689999998431
Q ss_pred cccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCce
Q 003970 353 RTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANAS 432 (782)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~ 432 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccc
Q 003970 433 GLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPD 512 (782)
Q Consensus 433 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 512 (782)
.+.++.||++||. ||
T Consensus 183 ---------------------------------------------------------~~~~~~fS~~G~~--------~d 197 (281)
T 1to2_E 183 ---------------------------------------------------------SNQRASFSSVGPE--------LD 197 (281)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTT--------CC
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCC--------ce
Confidence 2356899999996 69
Q ss_pred eeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcc
Q 003970 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSI 592 (782)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~ 592 (782)
|+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 198 i~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------ 258 (281)
T 1to2_E 198 VMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------ 258 (281)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------
T ss_pred EEecCCCeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC------
Confidence 999999999999865 8999999999999999999999999999999999999999999753
Q ss_pred ccCCCCCcCCCCCccccccCccccCCC
Q 003970 593 LAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
+++.||||+||+.+|+++
T Consensus 259 ---------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccceecHHHHhhh
Confidence 345899999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-51 Score=439.91 Aligned_cols=273 Identities=25% Similarity=0.303 Sum_probs=218.6
Q ss_pred ccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccc
Q 003970 116 MGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKG 195 (782)
Q Consensus 116 ~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~ 195 (782)
+++... +++.+|..+++|+||+|||||||||++||+|.+. +++.+.|..+
T Consensus 23 w~l~~i-~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~~ 72 (327)
T 2x8j_A 23 MGVEIV-EAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAER-----------------------------IIGGVNLTTD 72 (327)
T ss_dssp HHHHHT-THHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG-----------------------------EEEEEECSSG
T ss_pred cchhhc-ChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc-----------------------------ccCCccccCC
Confidence 355544 6788999999999999999999999999999632 3334444433
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHH
Q 003970 196 FEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADI 275 (782)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i 275 (782)
+.. +.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++..+ .+..+++
T Consensus 73 ~~~-----------~~~~~~d~~gHGT~VAgiia~~~-~~--------~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i 129 (327)
T 2x8j_A 73 YGG-----------DETNFSDNNGHGTHVAGTVAAAE-TG--------SGVVGVAPKADLFIIKALSGDG---SGEMGWI 129 (327)
T ss_dssp GGG-----------CTTCCCCSSSHHHHHHHHHHCCC-CS--------SBCCCSSTTCEEEEEECSCTTS---EECHHHH
T ss_pred CCC-----------CCCCCCCCCCchHHHHHHHhccC-CC--------CCcEeeCCCCEEEEEEeECCCC---CcCHHHH
Confidence 211 11235688999999999999974 21 2358999999999999998765 5788999
Q ss_pred HHHHHHHhh------cCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-----CCcccCCCceE
Q 003970 276 LAAFDDALH------DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-----SLVQNVAPWSI 344 (782)
Q Consensus 276 ~~ai~~a~~------~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~ap~vi 344 (782)
++||+||++ .+++|||||||... ....+..++.++.++|++||+||||+|... ...+...+++|
T Consensus 130 ~~ai~~a~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi 204 (327)
T 2x8j_A 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPT-----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVI 204 (327)
T ss_dssp HHHHHHHHHCCCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSE
T ss_pred HHHHHHHHhhcccccCCceEEEECCCcCC-----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEE
Confidence 999999999 89999999999874 235677788889999999999999999652 23344568999
Q ss_pred EecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHH
Q 003970 345 CVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEA 424 (782)
Q Consensus 345 tVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~ 424 (782)
+|||++.
T Consensus 205 ~Vga~~~------------------------------------------------------------------------- 211 (327)
T 2x8j_A 205 AVGAVDF------------------------------------------------------------------------- 211 (327)
T ss_dssp EEEEECT-------------------------------------------------------------------------
T ss_pred EEEEECC-------------------------------------------------------------------------
Confidence 9998542
Q ss_pred HHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC
Q 003970 425 AAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI 504 (782)
Q Consensus 425 ~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~ 504 (782)
.+.++.||++||.
T Consensus 212 -----------------------------------------------------------------~~~~~~fS~~G~~-- 224 (327)
T 2x8j_A 212 -----------------------------------------------------------------DLRLSDFTNTNEE-- 224 (327)
T ss_dssp -----------------------------------------------------------------TCCBSCC---CCC--
T ss_pred -----------------------------------------------------------------CCCCCCccCCCCC--
Confidence 3457899999985
Q ss_pred CCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh-----CCCCCHHHHHHHHH
Q 003970 505 SPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA-----HPNWSPAAIRSALM 579 (782)
Q Consensus 505 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~lsp~~Ik~~L~ 579 (782)
|||+|||++|+++++.+ .|..++|||||||||||++|||+|+ +|.+++.+||++|+
T Consensus 225 ------~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~ 285 (327)
T 2x8j_A 225 ------IDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLV 285 (327)
T ss_dssp ------CSEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ------ceEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHH
Confidence 79999999999998865 7999999999999999999999999 99999999999999
Q ss_pred hccccCCCCCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 580 TTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 580 ~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
+||+++.. ++..+|+|+||+.+|++.
T Consensus 286 ~tA~~~g~--------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 286 RRATPIGF--------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp TTEECCSS--------------CHHHHTTCEECTTHHHHH
T ss_pred HhCccCCC--------------CCCceeeeEECHHHHHHh
Confidence 99997531 456899999999999973
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-50 Score=423.79 Aligned_cols=265 Identities=26% Similarity=0.322 Sum_probs=220.7
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++... ++..+|... +|+||+|+|||||||++||+|.+. ++..+.|.++
T Consensus 14 ~l~~i-~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~~- 61 (279)
T 1thm_A 14 GPQKI-QAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFVDN- 61 (279)
T ss_dssp HHHHT-THHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETTTT-
T ss_pred ChhhC-ChHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC-----------------------------ccccccccCC-
Confidence 44443 677899887 799999999999999999999632 3333334321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ .+..++++
T Consensus 62 --------------~~~~~d~~gHGT~vAgiia~~~~n~~--------g~~GvAp~a~l~~~~v~~~~g---~~~~~~~~ 116 (279)
T 1thm_A 62 --------------DSTPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLDNSG---SGTWTAVA 116 (279)
T ss_dssp --------------BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSCTTS---CCCHHHHH
T ss_pred --------------CCCCCCCCCcHHHHHHHHhCccCCCC--------ccEEeCCCCEEEEEEeeCCCC---CccHHHHH
Confidence 12457889999999999999864332 258999999999999998776 57889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccc
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~ 356 (782)
+||+||+++|++|||||||... ....+..++.++.++|+++|+||||+|......+...+++|+|||++.
T Consensus 117 ~ai~~a~~~g~~Vin~S~G~~~-----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----- 186 (279)
T 1thm_A 117 NGITYAADQGAKVISLSLGGTV-----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ----- 186 (279)
T ss_dssp HHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-----
T ss_pred HHHHHHHHCCCCEEEEecCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-----
Confidence 9999999999999999999874 235677788889999999999999999776666677899999998542
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
.+.++.||++||. |||+||
T Consensus 187 -----------------------------------------------------~~~~~~fS~~G~~--------~dv~AP 205 (279)
T 1thm_A 187 -----------------------------------------------------NDNKSSFSTYGSW--------VDVAAP 205 (279)
T ss_dssp -----------------------------------------------------TSCBCTTCCCCTT--------CCEEEE
T ss_pred -----------------------------------------------------CCCcCCcCCCCCc--------eEEEEc
Confidence 2356899999986 699999
Q ss_pred CceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 003970 517 GIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596 (782)
Q Consensus 517 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~ 596 (782)
|++|+++++.+ .|..++|||||||||||++||| ++|.+++++||++|++||+++...+
T Consensus 206 G~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~------- 263 (279)
T 1thm_A 206 GSSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG------- 263 (279)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT-------
T ss_pred CCCeEEEeCCC-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC-------
Confidence 99999999875 8999999999999999999999 5899999999999999999865321
Q ss_pred CCCcCCCCCccccccCccccCC
Q 003970 597 SMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 597 ~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
..||+|+||+.+|++
T Consensus 264 -------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 264 -------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -------TTBSSEECCHHHHHH
T ss_pred -------ccccCCeeCHHHHhc
Confidence 469999999999975
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-51 Score=449.69 Aligned_cols=312 Identities=23% Similarity=0.202 Sum_probs=197.6
Q ss_pred CCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCC
Q 003970 124 GEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPL 203 (782)
Q Consensus 124 ~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~ 203 (782)
+.++|..+..|++|+|||||||||++||+|++.. ..+....|+..++...... ...+..+.... ..+........
T Consensus 20 ~~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~ 94 (357)
T 4h6x_A 20 LADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAE-VSKVFPYWHEPAEPITPED--YAAFQSIRDQG--LKGKEKEEALE 94 (357)
T ss_dssp HHHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCE-EEECCCTTSCCCCCCCHHH--HHHHHHHHHHT--CCSHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCC-cccccccccccccccCccc--ccccccccCcc--ccccccccccc
Confidence 4569999999999999999999999999998765 5555556665443221000 00000000000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCC--CCCCHHHHHHHHHH
Q 003970 204 NASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSD--GKCTEADILAAFDD 281 (782)
Q Consensus 204 ~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~--~~~~~~~i~~ai~~ 281 (782)
....+..++.|.+||||||||||||+..+ .+.||||+|+|+.+|++...... ..+...++++||+|
T Consensus 95 --~~~~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~ 162 (357)
T 4h6x_A 95 --AVIPDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDL 162 (357)
T ss_dssp --HHCTTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHH
T ss_pred --cccCCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHH
Confidence 00001224557889999999999997422 35899999999999997543210 12455678999999
Q ss_pred HhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEe
Q 003970 282 ALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVV 361 (782)
Q Consensus 282 a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~ 361 (782)
|++.|++|||||||.... .....+.+..++.++.++|++||+||||+|......+...|++|+|||++.
T Consensus 163 a~~~g~~Vin~S~G~~~~-~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------- 231 (357)
T 4h6x_A 163 ALELGANIIHCAFCRPTQ-TSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV---------- 231 (357)
T ss_dssp HHHTTCSEEEEC------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT----------
T ss_pred HHHcCCCEEeeccccCCc-cccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc----------
Confidence 999999999999998742 233456778888899999999999999999776666777899999998542
Q ss_pred CCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 362 NSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEE
Q 003970 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVL 521 (782)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 521 (782)
.+.++.||+||+.. .||||+|||++|+
T Consensus 232 ------------------------------------------------~~~~~~fSn~G~~~-----~~~di~APG~~i~ 258 (357)
T 4h6x_A 232 ------------------------------------------------DGTPCHFSNWGGNN-----TKEGILAPGEEIL 258 (357)
T ss_dssp ------------------------------------------------TSSBCTTCC---CT-----TTTEEEEECSSEE
T ss_pred ------------------------------------------------CCcccccccCCCCC-----CccceeecCCCeE
Confidence 34578999999753 4899999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCccccCCC
Q 003970 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGGS 597 (782)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~ 597 (782)
++++.+. .|..++|||||||||||++|||+++ +|.|+++|||++|++||++++...
T Consensus 259 s~~~~~~------------~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-------- 318 (357)
T 4h6x_A 259 GAQPCTE------------EPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-------- 318 (357)
T ss_dssp ECCTTCS------------CCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------
T ss_pred eccCCCC------------cccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC--------
Confidence 9988652 5778999999999999999999965 568999999999999999865321
Q ss_pred CCcCCCCCccccccCccccCC
Q 003970 598 MKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 598 ~~~~~~~~~G~G~vn~~~Al~ 618 (782)
...+.+||+|+||+.+|++
T Consensus 319 --~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 319 --VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp --------CTTCBCCHHHHHH
T ss_pred --CCCcccceeEEecHHHHHH
Confidence 2245689999999999997
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=426.39 Aligned_cols=288 Identities=29% Similarity=0.327 Sum_probs=225.2
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
++..+ +++.+|..+++|+||+|+|||||||++||+|.+. +...+.|....
T Consensus 9 ~l~~i-~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------------~~~~~~~~~~~ 58 (310)
T 2ixt_A 9 GIKAI-YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGAT 58 (310)
T ss_dssp HHHHH-HTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSSS
T ss_pred chhhc-CchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc-----------------------------ccccccccCCC
Confidence 44443 6788999999999999999999999999999643 22233333221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
. .......|..||||||||||+|.... ....+.||||+|+|+.+|++...+ .+..++++
T Consensus 59 ~-----------~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~~~ 117 (310)
T 2ixt_A 59 T-----------PINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSG---SGYSDDIA 117 (310)
T ss_dssp S-----------CEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTS---CCCHHHHH
T ss_pred C-----------CCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCC---CCcHHHHH
Confidence 0 01124567899999999999997521 122358999999999999998776 47889999
Q ss_pred HHHHHHhhcCC-----cEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC--cccCCCceEEeccc
Q 003970 277 AAFDDALHDGV-----DVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL--VQNVAPWSICVAAS 349 (782)
Q Consensus 277 ~ai~~a~~~gv-----dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAs 349 (782)
+||+||+++++ +|||||||... ....+..++.++.++|++||+||||+|....+ .+...+++|+|||+
T Consensus 118 ~ai~~a~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~ 192 (310)
T 2ixt_A 118 AAIRHAADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAAL 192 (310)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEE
T ss_pred HHHHHHHHhhhccCCCeEEEEcCCCCC-----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEec
Confidence 99999999988 99999999874 24567778888999999999999999976433 34456999999985
Q ss_pred ccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHc
Q 003970 350 SIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKA 429 (782)
Q Consensus 350 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~ 429 (782)
+...
T Consensus 193 ~~~~---------------------------------------------------------------------------- 196 (310)
T 2ixt_A 193 ENVQ---------------------------------------------------------------------------- 196 (310)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 4100
Q ss_pred CceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCC--ccccccCCCCCCCC--
Q 003970 430 NASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAP--TVAYFSSRGPSSIS-- 505 (782)
Q Consensus 430 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~Gp~~~~-- 505 (782)
..+ .++.||++||....
T Consensus 197 -----------------------------------------------------------~~g~~~~~~~S~~G~~~~~g~ 217 (310)
T 2ixt_A 197 -----------------------------------------------------------QNGTYRVADYSSRGYISTAGD 217 (310)
T ss_dssp -----------------------------------------------------------ETTEEEECTTSCCCCTTTTTS
T ss_pred -----------------------------------------------------------cCCCeeeccccCCCCccCCcc
Confidence 012 56889999995321
Q ss_pred --CCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 506 --PDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 506 --~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
..+.||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||+
T Consensus 218 ~~~~~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~ 284 (310)
T 2ixt_A 218 YVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAK 284 (310)
T ss_dssp SSCCTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCeeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Confidence 1235999999999999998865 8999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccCCCCCcCCCCCccccccCc
Q 003970 584 TRDTSHDSILAGGSMKVSDPFDIGAGHINP 613 (782)
Q Consensus 584 ~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 613 (782)
+.+..+. ....+.++..+|||++|+
T Consensus 285 ~~~~~~~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 285 SVDIKGG-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp TSCCCBS-----TTCCSSSBTTTBTCBCCC
T ss_pred ccCCCCC-----cccccCCccccccceeec
Confidence 8764321 122345778999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=430.58 Aligned_cols=272 Identities=27% Similarity=0.338 Sum_probs=220.7
Q ss_pred cccccCCCCccCCCCCCCC--CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccc
Q 003970 117 GLILDNTGEVTPVQLAYGD--DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVK 194 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~--gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~ 194 (782)
++..+ +++.+|..+ +|+ ||+|+|||||||++||+|.+. +.....|..
T Consensus 11 ~l~~i-~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~ 59 (320)
T 2z30_A 11 GIERV-KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------------IAWCVSTLR 59 (320)
T ss_dssp HHHHT-TCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG-----------------------------EEEEEECGG
T ss_pred Chhhc-ChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc-----------------------------cccCccccC
Confidence 45444 778899988 999 999999999999999999642 222222322
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHH
Q 003970 195 GFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEAD 274 (782)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~ 274 (782)
+... ....+..|..||||||||||+|.. + ...+.||||+|+|+.+|+++..+ .+..++
T Consensus 60 ~~~~----------~~~~~~~d~~gHGT~vAgiia~~~-n--------~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~ 117 (320)
T 2z30_A 60 GKVS----------TKLRDCADQNGHGTHVIGTIAALN-N--------DIGVVGVAPGVQIYSVRVLDARG---SGSYSD 117 (320)
T ss_dssp GCCB----------CCHHHHBCSSSHHHHHHHHHHCCS-S--------SBSCCCSSTTCEEEEEECSCTTS---EEEHHH
T ss_pred CccC----------CCCCCCCCCCCCHHHHHHHHHccc-C--------CCceEeeCCCCEEEEEEeeCCCC---CccHHH
Confidence 1100 001124578999999999999973 1 12358999999999999998766 578899
Q ss_pred HHHHHHHHhhc--------------------CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC
Q 003970 275 ILAAFDDALHD--------------------GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS 334 (782)
Q Consensus 275 i~~ai~~a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~ 334 (782)
+++||+||+++ +++|||||||... ....+..++.++.++|++||+||||+|....
T Consensus 118 i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~ 192 (320)
T 2z30_A 118 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA-----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSP 192 (320)
T ss_dssp HHHHHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSC
T ss_pred HHHHHHHHHhCcccccccccccccccccccCCceEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 99999999987 9999999999874 2356677788899999999999999998766
Q ss_pred CcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCC
Q 003970 335 LVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTM 414 (782)
Q Consensus 335 ~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~ 414 (782)
..+...|++|+|||++.
T Consensus 193 ~~Pa~~~~vi~Vga~~~--------------------------------------------------------------- 209 (320)
T 2z30_A 193 SYPAAYPEVIAVGAIDS--------------------------------------------------------------- 209 (320)
T ss_dssp CBTTTSTTEEEEEEECT---------------------------------------------------------------
T ss_pred CCcccCCCeEEEEeeCC---------------------------------------------------------------
Confidence 66677899999998541
Q ss_pred CCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccc
Q 003970 415 GSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVA 494 (782)
Q Consensus 415 ~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 494 (782)
.+.++
T Consensus 210 ---------------------------------------------------------------------------~~~~~ 214 (320)
T 2z30_A 210 ---------------------------------------------------------------------------NDNIA 214 (320)
T ss_dssp ---------------------------------------------------------------------------TSCBC
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 24568
Q ss_pred cccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC--------
Q 003970 495 YFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH-------- 566 (782)
Q Consensus 495 ~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------- 566 (782)
.||++|| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 215 ~~S~~g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~ 271 (320)
T 2z30_A 215 SFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKIL 271 (320)
T ss_dssp TTSCSSC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCCCC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhccccc
Confidence 9999996 6899999999999865 89999999999999999999999999
Q ss_pred -----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 567 -----PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 567 -----P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
|.|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 272 ~~~~~p~lt~~~v~~~L~~ta~~~~~~------------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 272 PVGTFDDISKNTVRGILHITADDLGPT------------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCCTTCCSTTSHHHHHHHHSBCCSSS------------SSBTTTBTCBCCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhhCccCCCC------------CCCCCcCCceeCHHHHHHH
Confidence 9999999999999999976432 2456799999999999874
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-50 Score=425.13 Aligned_cols=267 Identities=27% Similarity=0.255 Sum_probs=210.1
Q ss_pred CCCC-CCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCC
Q 003970 131 LAYG-DDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNR 209 (782)
Q Consensus 131 ~~~G-~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 209 (782)
.++| +||+|||||||||++||+|++.. +.+..++.. .
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~----------------------------~~~~~~~~~--------------~ 40 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD----------------------------LTVLPTLAP--------------T 40 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE----------------------------EEECCCSSC--------------C
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe----------------------------eecCcCCCC--------------C
Confidence 3578 79999999999999999997432 011011100 0
Q ss_pred CCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcE
Q 003970 210 EYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDV 289 (782)
Q Consensus 210 ~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdV 289 (782)
......|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+... .....++++||+||++++++|
T Consensus 41 ~~~~d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a~~~~~~V 108 (282)
T 3zxy_A 41 AARSDGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRR--RITQLDLARGIERAVNAGAHI 108 (282)
T ss_dssp CCCTTCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSS--CCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccc--cchHHHHHHHHHHhhccCCeE
Confidence 1122335679999999999997532 3589999999999999865542 467888999999999999999
Q ss_pred EEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEe
Q 003970 290 ISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVG 369 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g 369 (782)
||||||.... .......+..++..+.++|+++|+||||+|......+...+++|+|||++.
T Consensus 109 in~S~G~~~~-~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------ 169 (282)
T 3zxy_A 109 INISGGELTD-FGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD------------------ 169 (282)
T ss_dssp EEECCCEEES-SSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT------------------
T ss_pred EeccCccccc-cccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC------------------
Confidence 9999997631 222344567788889999999999999999877666777899999998541
Q ss_pred eeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccc
Q 003970 370 ESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDI 449 (782)
Q Consensus 370 ~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 449 (782)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCC
Q 003970 450 IPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTP 529 (782)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 529 (782)
.+.++.||+||+. ..||||+|||++|+++++.+
T Consensus 170 ----------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~-- 202 (282)
T 3zxy_A 170 ----------------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG-- 202 (282)
T ss_dssp ----------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS--
T ss_pred ----------------------------------------CCccccccCCCCC-----ccccceeccCcceeeecCCC--
Confidence 3456889999875 46899999999999999876
Q ss_pred CCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCC
Q 003970 530 PTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH----PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFD 605 (782)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 605 (782)
.|..++|||||||||||++|||+|++ |.++|++||++|++||++++... +.....
T Consensus 203 -----------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~----------~~~~~~ 261 (282)
T 3zxy_A 203 -----------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDA----------PEQARR 261 (282)
T ss_dssp -----------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGG
T ss_pred -----------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCC----------CCccCc
Confidence 89999999999999999999999975 78999999999999999765321 234567
Q ss_pred ccccccCccccCC
Q 003970 606 IGAGHINPMKAMD 618 (782)
Q Consensus 606 ~G~G~vn~~~Al~ 618 (782)
+|+|+||+.+|++
T Consensus 262 ~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 262 CLAGRLNVSGAFT 274 (282)
T ss_dssp GTTCBCCHHHHHH
T ss_pred eeeeEeCHHHHHH
Confidence 9999999999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=429.00 Aligned_cols=276 Identities=25% Similarity=0.258 Sum_probs=218.3
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
+++++|+.+..++||+|||||||||++||+|.+.. +.+..++..+
T Consensus 9 G~~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~----------------------------~~~~~~~~~~------- 53 (306)
T 4h6w_A 9 GLKKLWSETRGDPKICVAVLDGIVDQNHPCFIGAD----------------------------LTRLPSLVSG------- 53 (306)
T ss_dssp THHHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE----------------------------EEECC------------
T ss_pred CHHHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc----------------------------ccCCCcccCC-------
Confidence 34569998877799999999999999999997432 1111111111
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
+.....|.+||||||||||+|+.. +.+.||||+|+|+.+|++.+... .+....+++||+||
T Consensus 54 -------~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a 114 (306)
T 4h6w_A 54 -------EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESL--KLSQLDLSRAIEQA 114 (306)
T ss_dssp ------------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSC--CCCHHHHHHHHHHH
T ss_pred -------CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccc--cchHHHHHHHHHHh
Confidence 112334678999999999999742 23589999999999999876542 47788999999999
Q ss_pred hhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeC
Q 003970 283 LHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVN 362 (782)
Q Consensus 283 ~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~ 362 (782)
++++++|||+|||.... .......+..++..+.++|+++|++|||+|......+...+++|+|||++.
T Consensus 115 ~~~g~~vi~~s~g~~~~-~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~----------- 182 (306)
T 4h6w_A 115 VNNGANIINVSAGQLTD-AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD----------- 182 (306)
T ss_dssp HHTTCSEEEECCCEEES-SSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT-----------
T ss_pred hcccceeeecccccccc-CCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC-----------
Confidence 99999999999997532 223445577788889999999999999999776666666799999998542
Q ss_pred CccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc
Q 003970 363 SDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE 442 (782)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 442 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEe
Q 003970 443 LIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLA 522 (782)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 522 (782)
.+.+++||++|+. ..||||+|||++|++
T Consensus 183 -----------------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s 210 (306)
T 4h6w_A 183 -----------------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILG 210 (306)
T ss_dssp -----------------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEE
T ss_pred -----------------------------------------------CCCccccccccCC-----cCcceeecCCcCccc
Confidence 2356789999865 358999999999999
Q ss_pred ecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCC
Q 003970 523 AWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598 (782)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~ 598 (782)
+++.+ .|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+.
T Consensus 211 ~~~~~-------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~-------- 269 (306)
T 4h6w_A 211 AKPNG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDT-------- 269 (306)
T ss_dssp ECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC--------
T ss_pred ccCCC-------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCC--------
Confidence 99876 8999999999999999999999865 6999999999999999998754331
Q ss_pred CcCCCCCccccccCccccCCC
Q 003970 599 KVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 599 ~~~~~~~~G~G~vn~~~Al~~ 619 (782)
.....||+|+||+.+|++.
T Consensus 270 --~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 270 --DDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp --SCGGGGTTCBCCHHHHHHH
T ss_pred --CCCCCcceeecCHHHHHHH
Confidence 2334799999999999973
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-49 Score=429.48 Aligned_cols=277 Identities=20% Similarity=0.135 Sum_probs=217.9
Q ss_pred cccccCCCCccCCCCCCCC--CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccc
Q 003970 117 GLILDNTGEVTPVQLAYGD--DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVK 194 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~--gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~ 194 (782)
++... ++..+|.. .+|+ ||+||||||||| +||+|.+. ++..+.|..
T Consensus 26 ~l~~i-~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~-----------------------------~~~~~~~~~ 73 (347)
T 2iy9_A 26 YFDAI-GLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS-----------------------------EFAKFSFTQ 73 (347)
T ss_dssp HHHHH-TCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC-----------------------------EEEEEECBT
T ss_pred chhhC-ChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC-----------------------------cccCCcccC
Confidence 34433 67789988 8999 999999999999 99999642 222333332
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHH
Q 003970 195 GFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEAD 274 (782)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~ 274 (782)
+.. ......+.|..||||||||||+|+. | +.||||+|+|+.+|+++..+ .. +
T Consensus 74 ~~~----------~~~~~~~~d~~gHGT~vAgiia~~~-------g-----~~GvAp~a~l~~~~v~~~~~----~~--~ 125 (347)
T 2iy9_A 74 DGS----------PFPVKKSEALYIHGTAMASLIASRY-------G-----IYGVYPHALISSRRVIPDGV----QD--S 125 (347)
T ss_dssp TCC----------SSCCSSSHHHHHHHHHHHHHHHCSS-------S-----SCCSSTTCEEEEEECCSSBC----TT--H
T ss_pred CCC----------CCCCCCCCCCCCcHHHHHHHHhccc-------C-----CcccCCCCEEEEEEEecCCC----HH--H
Confidence 100 0011245678999999999999971 2 48999999999999997654 22 9
Q ss_pred HHHHHHHHhhc------CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-------CCcccCCC
Q 003970 275 ILAAFDDALHD------GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-------SLVQNVAP 341 (782)
Q Consensus 275 i~~ai~~a~~~------gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-------~~~~~~ap 341 (782)
+++||+||+++ +++|||||||... .......+..++.++.++|++||+||||+|... ...+...+
T Consensus 126 ~~~ai~~a~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~ 203 (347)
T 2iy9_A 126 WIRAIESIMSNVFLAPGEEKIINISGGQKG--VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYH 203 (347)
T ss_dssp HHHHHHHHHTCTTSCTTEEEEEEESSCBCC--C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCC
T ss_pred HHHHHHHHHhhhhcccCCceEEEeccccCC--CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCc
Confidence 99999999999 9999999999874 223456677888889999999999999999752 33444467
Q ss_pred ----------ceEEeccccc--CcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEE
Q 003970 342 ----------WSICVAASSI--DRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVL 409 (782)
Q Consensus 342 ----------~vitVgAs~~--d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~ 409 (782)
++|+|||++. +...
T Consensus 204 ~~~~~~~~~~~vi~Vga~~~~~~g~~------------------------------------------------------ 229 (347)
T 2iy9_A 204 PVSSVNKKQDPVIRVAALAQYRKGET------------------------------------------------------ 229 (347)
T ss_dssp CCSHHHHHTCCEEEEEEECCCCTTSC------------------------------------------------------
T ss_pred cccccccccCCEEEEEEcccCCCCce------------------------------------------------------
Confidence 9999999653 1100
Q ss_pred EeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCC
Q 003970 410 CFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVP 489 (782)
Q Consensus 410 ~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 489 (782)
...
T Consensus 230 -----------------------------------------------------------------------------~~~ 232 (347)
T 2iy9_A 230 -----------------------------------------------------------------------------PVL 232 (347)
T ss_dssp -----------------------------------------------------------------------------CCB
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 000
Q ss_pred CCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCC
Q 003970 490 APTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNW 569 (782)
Q Consensus 490 ~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~l 569 (782)
....+.||++||+ ||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|
T Consensus 233 ~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~l 292 (347)
T 2iy9_A 233 HGGGITGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRA 292 (347)
T ss_dssp CCCSSSCBCBCTT-------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTS
T ss_pred cCCCCCCCCCCCC-------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCC
Confidence 2345799999995 589999999999999865 89999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 570 SPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 570 sp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
++.+||++|++||++.... ....+|+|+||+.+|++.
T Consensus 293 t~~~v~~~L~~tA~~~~~~-------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 293 TATELKRTLLESADKYPSL-------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp CHHHHHHHHHHHSEECGGG-------------TTTSGGGEECCHHHHHHH
T ss_pred CHHHHHHHHHHhCccCCCC-------------CCccccCCEecHHHHHHH
Confidence 9999999999999986532 235899999999999984
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=435.12 Aligned_cols=296 Identities=25% Similarity=0.333 Sum_probs=223.4
Q ss_pred CCCccCC-CCCCCCCcEEEEeccccCC------CCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccc
Q 003970 123 TGEVTPV-QLAYGDDIVVGIFDTGVWP------ESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKG 195 (782)
Q Consensus 123 ~~~~~~~-~~~~G~gV~VgVIDtGId~------~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~ 195 (782)
+++.+|. .+++|+||+|||||||||+ .||+|.+. ++..+.|.+
T Consensus 9 ~~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~-----------------------------i~~~~~~~~- 58 (434)
T 1wmd_A 9 KADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK-----------------------------ITALYALGR- 58 (434)
T ss_dssp THHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC-----------------------------EEEEEETTT-
T ss_pred CchhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC-----------------------------EeeeccccC-
Confidence 5567897 7999999999999999999 79988632 233333321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHH
Q 003970 196 FEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADI 275 (782)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i 275 (782)
...+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..+.. ....+++
T Consensus 59 ---------------~~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~-~~~~~~~ 111 (434)
T 1wmd_A 59 ---------------TNNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL-GGLPSNL 111 (434)
T ss_dssp ---------------TTCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC-TTSCSSH
T ss_pred ---------------CCCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCcc-ccccHHH
Confidence 12466789999999999998631 25799999999999999876521 1245789
Q ss_pred HHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhh-hccCceEEEecCCCCCCCCCcc--cCCCceEEecccccC
Q 003970 276 LAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNA-MQHGVTVVFSGGNDGPEPSLVQ--NVAPWSICVAASSID 352 (782)
Q Consensus 276 ~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~--~~ap~vitVgAs~~d 352 (782)
.++|++|+++|++|||||||... .. ..+....++.++ .++|+++|+||||+|....++. ..++++|+|||++..
T Consensus 112 ~~ai~~a~~~g~~Vin~S~G~~~--~~-~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~ 188 (434)
T 1wmd_A 112 QTLFSQAYSAGARIHTNSWGAAV--NG-AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENL 188 (434)
T ss_dssp HHHHHHHHHTTCSEEEECCCBCC--TT-CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCS
T ss_pred HHHHHHHHhcCCeEEEecCCCCc--CC-cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEeccccc
Confidence 99999999999999999999874 11 123445555555 5899999999999998654444 347999999997643
Q ss_pred cccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCce
Q 003970 353 RTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANAS 432 (782)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~ 432 (782)
+... +.
T Consensus 189 ~~~~--------------------------------------------------------~~------------------ 194 (434)
T 1wmd_A 189 RPSF--------------------------------------------------------GS------------------ 194 (434)
T ss_dssp CGGG--------------------------------------------------------CG------------------
T ss_pred Cccc--------------------------------------------------------Cc------------------
Confidence 2100 00
Q ss_pred EEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccc
Q 003970 433 GLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPD 512 (782)
Q Consensus 433 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 512 (782)
.....+.++.||++||+. ++++|||
T Consensus 195 -----------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpd 219 (434)
T 1wmd_A 195 -----------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKPD 219 (434)
T ss_dssp -----------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCC
T ss_pred -----------------------------------------------------ccCCCCccccccCCCCCC--CCCCCce
Confidence 001145789999999995 7999999
Q ss_pred eeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCC-----CHHHHHHHHHhccccCCC
Q 003970 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNW-----SPAAIRSALMTTAYTRDT 587 (782)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~l-----sp~~Ik~~L~~TA~~~~~ 587 (782)
|+|||++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++..
T Consensus 220 i~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~ 298 (434)
T 1wmd_A 220 VMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL 298 (434)
T ss_dssp EEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS
T ss_pred EEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC
Confidence 999999999998753210000 00012479999999999999999999999999876 899999999999986431
Q ss_pred CCCccccCCCCCcCCCCCccccccCccccCCCc
Q 003970 588 SHDSILAGGSMKVSDPFDIGAGHINPMKAMDPG 620 (782)
Q Consensus 588 ~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~g 620 (782)
..++..+|||++|+.+|++..
T Consensus 299 ------------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 299 ------------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp ------------CSSCTTTTTCBCCHHHHHTCE
T ss_pred ------------CCCCccCCcCeEeHHHhcccc
Confidence 235678999999999999754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-48 Score=421.66 Aligned_cols=303 Identities=23% Similarity=0.258 Sum_probs=221.1
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++..+|+.+++|+||+||||||||+ +||+|.+.. ...|+-.......++.........-...++.. .... +
T Consensus 20 ~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~-~- 90 (340)
T 3lpc_A 20 KADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV-----LPGYDFISNSQISLDGDGRDADPFDEGDWFDN-WACG-G- 90 (340)
T ss_dssp CHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB-----CCCEECCCCHHHHCSSSSSBSCCBCCCCCBCT-TTTS-C-
T ss_pred CHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccc-----ccCccccCCccccccCCCccCCcccccccccc-cccc-C-
Confidence 6778999999999999999999998 999997542 01111000000000000000000000000000 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
...+.....|..||||||||||+|...++. .+.||||+|+|+.+|++...+ +..++++++|+||
T Consensus 91 ----~~~~~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~~v~~~~~----~~~~~~~~ai~~a 154 (340)
T 3lpc_A 91 ----RPDPRKERSDSSWHGSHVAGTIAAVTNNRI--------GVAGVAYGAKVVPVRALGRCG----GYDSDISDGLYWA 154 (340)
T ss_dssp ----TTCGGGSCBCCCCHHHHHHHHHHCCCSSSS--------SCCCTTTTSEEEEEECCBTTB----CCHHHHHHHHHHH
T ss_pred ----CCCcccCCCCCCCCHHHHHHHHHccCCCCC--------cceeecCCCEEEEEEEecCCC----CcHHHHHHHHHHH
Confidence 011223457889999999999999865433 258999999999999998765 7889999999999
Q ss_pred hh----------cCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC-CcccCCCceEEeccccc
Q 003970 283 LH----------DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS-LVQNVAPWSICVAASSI 351 (782)
Q Consensus 283 ~~----------~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~ 351 (782)
++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 155 ~~~~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~ 230 (340)
T 3lpc_A 155 AGGRIAGIPENRNPAKVINMSLGSDG----QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS 230 (340)
T ss_dssp HTCCCTTSCCCSSCCSEEEECCCEES----CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT
T ss_pred hcccccccccccCCCeEEEeCcCCCC----CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC
Confidence 98 89999999999863 12345677788889999999999999987543 34455789999998542
Q ss_pred CcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCc
Q 003970 352 DRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANA 431 (782)
Q Consensus 352 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga 431 (782)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCccc
Q 003970 432 SGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKP 511 (782)
Q Consensus 432 ~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 511 (782)
.+.++.||++||. |
T Consensus 231 ----------------------------------------------------------~~~~~~~S~~g~~--------~ 244 (340)
T 3lpc_A 231 ----------------------------------------------------------RGIRASFSNYGVD--------V 244 (340)
T ss_dssp ----------------------------------------------------------TSSBCTTCCBSTT--------C
T ss_pred ----------------------------------------------------------CCCcCCCCCCCCC--------c
Confidence 3457899999984 7
Q ss_pred ceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh-C---CCCCHHHHHHHHHhccccCCC
Q 003970 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA-H---PNWSPAAIRSALMTTAYTRDT 587 (782)
Q Consensus 512 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~lsp~~Ik~~L~~TA~~~~~ 587 (782)
||+|||++|+++++.+... .....|..++|||||||||||++|||+|+ + |.|++++||++|++||+++..
T Consensus 245 di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~ 318 (340)
T 3lpc_A 245 DLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG 318 (340)
T ss_dssp CEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS
T ss_pred eEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC
Confidence 9999999999998865321 11236999999999999999999999998 5 999999999999999997642
Q ss_pred CCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 588 SHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 588 ~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
.++..+|||+||+.+|++.
T Consensus 319 -------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 319 -------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp -------------CCSSCCCSSBCCHHHHHHH
T ss_pred -------------CCCCCcccceecHHHHHHH
Confidence 1455899999999999874
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=396.96 Aligned_cols=238 Identities=25% Similarity=0.349 Sum_probs=200.5
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
+...+|..+++|+||+|+|||||||++||+|.+. ++..+.|.+.
T Consensus 17 ~~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~~------- 60 (284)
T 1sh7_A 17 PLDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------------SVSGYDFVDN------- 60 (284)
T ss_dssp SCCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC-----------------------------EEEEEETTTT-------
T ss_pred CchhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC-----------------------------ccccccccCC-------
Confidence 3567899999999999999999999999999632 2222333221
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
..++.|..||||||||||+|+. .||||+|+|+.+|+++..+ .+..+++++||+|+
T Consensus 61 --------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g---~~~~~~~~~ai~~a 115 (284)
T 1sh7_A 61 --------DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSG---SGTTSGVISGVDWV 115 (284)
T ss_dssp --------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHH
T ss_pred --------CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCC---CcCHHHHHHHHHHH
Confidence 1245688999999999999863 6999999999999998776 57889999999999
Q ss_pred hhc--CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC-CcccCCCceEEecccccCcccceeE
Q 003970 283 LHD--GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS-LVQNVAPWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 283 ~~~--gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~d~~~~~~~ 359 (782)
+++ +++|||||||... ...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 116 ~~~~~~~~Vin~S~G~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------- 181 (284)
T 1sh7_A 116 AQNASGPSVANMSLGGGQ------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS-------- 181 (284)
T ss_dssp HHHCCSSEEEEECCCBSC------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT--------
T ss_pred HhCCCCCcEEEeCCCCCC------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC--------
Confidence 984 7999999999873 356777888899999999999999996542 33455799999998541
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
.+.++.||++||. |||+|||++
T Consensus 182 --------------------------------------------------~~~~~~~S~~G~~--------~di~ApG~~ 203 (284)
T 1sh7_A 182 --------------------------------------------------SDSRSSFSNWGSC--------VDLFAPGSQ 203 (284)
T ss_dssp --------------------------------------------------TSBBCTTCCBSTT--------CCEEEECSS
T ss_pred --------------------------------------------------CCCcCcccCCCCc--------cEEEeccCC
Confidence 3456899999997 699999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~ 586 (782)
|+++++.+ .|..++|||||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 204 i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 204 IKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp EEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred eEEecCCC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 99998865 7999999999999999999999999999999999999999998753
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=450.75 Aligned_cols=361 Identities=23% Similarity=0.231 Sum_probs=247.4
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhh-----cCCcE
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALH-----DGVDV 289 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~-----~gvdV 289 (782)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..... .+....++.+|.+|++ .|++|
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~-~~t~s~l~~AI~~Aid~a~~~~gadV 336 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGS-METGTALVRAMTKVMELCRDGRRIDV 336 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSS-CBCHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCc-ccChHHHHHHHHHHHHHHhhcCCceE
Confidence 478999999999999985 22 235899999999999998765421 2366788888888887 79999
Q ss_pred EEecccCCCCCCCCccChHHHHHHhhh-ccCceEEEecCCCCCCCCCcccC----CCceEEecccccCcccceeEEeCCc
Q 003970 290 ISASFGESPPLRPFFASNADIGSFNAM-QHGVTVVFSGGNDGPEPSLVQNV----APWSICVAASSIDRTFPTEIVVNSD 364 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~~~~~----ap~vitVgAs~~d~~~~~~~~~~~~ 364 (782)
||||||... .....+.+..++.++. ++|++||+||||+|+...++..+ ++++|+|||++.+.........
T Consensus 337 INmS~G~~~--~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~--- 411 (1354)
T 3lxu_X 337 INMSYGEHA--NWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM--- 411 (1354)
T ss_dssp EEECCCCCC--SCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-------
T ss_pred EEcCCccCC--CCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc---
Confidence 999999984 2233456777777775 89999999999999865554332 6999999997643211000000
Q ss_pred cEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccc
Q 003970 365 FSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELI 444 (782)
Q Consensus 365 ~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 444 (782)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeec
Q 003970 445 AEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAW 524 (782)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 524 (782)
.....+.+++|||+||+. ++++||||+|||++|+++.
T Consensus 412 -----------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~ 448 (1354)
T 3lxu_X 412 -----------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVP 448 (1354)
T ss_dssp -----------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-------
T ss_pred -----------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEee
Confidence 001135789999999995 7999999999999999976
Q ss_pred CCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCc
Q 003970 525 PPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----AHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKV 600 (782)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~ 600 (782)
.... ..|..++|||||||||||++|||++ .+|.|++.+||++|++||++.+.
T Consensus 449 ~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~------------- 504 (1354)
T 3lxu_X 449 QFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------- 504 (1354)
T ss_dssp -------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT-------------
T ss_pred cCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC-------------
Confidence 5421 2789999999999999999999987 79999999999999999997643
Q ss_pred CCCCCccccccCccccCCCceeecCCchhhHhhhhccCCCccceeeecCCCCCCCCCccCCCCCCCCCCCCCcCeEEEee
Q 003970 601 SDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQINKIFLPSPDETERTSCPQAHKIPNSFINYPSITVSN 680 (782)
Q Consensus 601 ~~~~~~G~G~vn~~~Al~~glv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~ 680 (782)
.+++.||||+||+.+|++..+.|+..+.+++.|.|.++..... .+... .. .|
T Consensus 505 ~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~r-gIylR------~~-~~-------------------- 556 (1354)
T 3lxu_X 505 VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK-GIHLR------QG-VQ-------------------- 556 (1354)
T ss_dssp SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBS-SEEEC------SS-CC--------------------
T ss_pred CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCC-ceEEe------cc-cc--------------------
Confidence 2456899999999999999999999999999999998853321 11111 00 00
Q ss_pred cCceEEEEEEEE----ec---CCCCCeE--EEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEE
Q 003970 681 LQSTMTIKRTVK----NV---GQKKNAI--YFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQI 751 (782)
Q Consensus 681 ~~~~~~~~rtvt----nv---~~~~~~t--y~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~ 751 (782)
....+++.+|+ |. ....... -++.+....- -|. -|..|.+ .++.++|.|.+++... ..+..+++|
T Consensus 557 -~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~-wv~-~p~~l~l--~~~~r~~~v~vDp~~L-~~G~h~~~v 630 (1354)
T 3lxu_X 557 -RNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQP-WVQ-CGAFLDL--SYGTRSIAVRVDPTGL-QPGVHSAVI 630 (1354)
T ss_dssp -CSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESST-TEE-ECSCEEC--TTSCEEEEEEECGGGC-CSEEEEEEE
T ss_pred -CCceEEEEEEeeeecCcccCChhhccceEEEEEEecCCC-cee-cccceee--cCCCceEEEEECCCCC-CCcceeEEE
Confidence 11223333321 11 1110111 2223322111 233 3777766 4677889999998644 456789999
Q ss_pred EEEc-----CceEEEeEEEEEEcCC
Q 003970 752 VWSD-----GFHYVRSPLVVFVNNT 771 (782)
Q Consensus 752 ~~~~-----~~~~v~~P~~~~~~~~ 771 (782)
..-| ..+..|+|+-|.....
T Consensus 631 ~~~D~~~~~~gp~f~ipvTv~~P~~ 655 (1354)
T 3lxu_X 631 RAYDTDCVQKGSLFEIPVTVVQPHV 655 (1354)
T ss_dssp EEEESSCTTSCCSEEEEEEEEECBC
T ss_pred EEEEcCCcccCceEEeeEEEEeeee
Confidence 8765 2588999999887653
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=396.21 Aligned_cols=240 Identities=27% Similarity=0.309 Sum_probs=200.5
Q ss_pred cCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCC
Q 003970 127 TPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206 (782)
Q Consensus 127 ~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 206 (782)
.|.. .+|+||+|+|||||||++||+|.+. +...+.|.
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~-----------------------------~~~~~~~~------------- 60 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR-----------------------------AQMVKTYY------------- 60 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEESS-------------
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc-----------------------------cccccCCC-------------
Confidence 5543 7899999999999999999999642 22222222
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
.++.|..||||||||||+|+. .||||+|+|+.+|+++..+ .+..+++++||+|+++++
T Consensus 61 -----~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g---~~~~~~~~~ai~~a~~~~ 118 (279)
T 2pwa_A 61 -----YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIAGMDFVASDK 118 (279)
T ss_dssp -----SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHHG
T ss_pred -----CCCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCC---CcCHHHHHHHHHHHHhcC
Confidence 135678999999999999862 6999999999999998776 578899999999999998
Q ss_pred C-------cEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC-CcccCCCceEEecccccCccccee
Q 003970 287 V-------DVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS-LVQNVAPWSICVAASSIDRTFPTE 358 (782)
Q Consensus 287 v-------dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~d~~~~~~ 358 (782)
+ +|||||||... ...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 119 ~~~~~~~~~Vin~S~G~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------- 185 (279)
T 2pwa_A 119 NNRNCPKGVVASLSLGGGY------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------- 185 (279)
T ss_dssp GGSCCTTEEEEEECCCEEC------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------
T ss_pred ccccCCCccEEEecCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC-------
Confidence 8 99999999762 356777888899999999999999997543 23455799999998542
Q ss_pred EEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEec
Q 003970 359 IVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAE 438 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n 438 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc
Q 003970 439 PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI 518 (782)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 518 (782)
.+.++.||++||. |||+|||+
T Consensus 186 ---------------------------------------------------~~~~~~~S~~G~~--------~di~APG~ 206 (279)
T 2pwa_A 186 ---------------------------------------------------YDRRSSFSNYGSV--------LDIFGPGT 206 (279)
T ss_dssp ---------------------------------------------------TSBBCTTCCBSTT--------CCEEEECS
T ss_pred ---------------------------------------------------CCCcCCcCCCCCc--------ceEEEecC
Confidence 3457899999996 69999999
Q ss_pred eEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCC
Q 003970 519 GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598 (782)
Q Consensus 519 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~ 598 (782)
+|+++++.+ .|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 207 ~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~----------- 261 (279)
T 2pwa_A 207 DILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL----------- 261 (279)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-----------
T ss_pred CeEEeecCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-----------
Confidence 999999875 7999999999999999999999999 999999999999999987421
Q ss_pred CcCCCCCccccccCc
Q 003970 599 KVSDPFDIGAGHINP 613 (782)
Q Consensus 599 ~~~~~~~~G~G~vn~ 613 (782)
..+|+|..|+
T Consensus 262 -----~~~~~g~~n~ 271 (279)
T 2pwa_A 262 -----SNIPFGTVNL 271 (279)
T ss_dssp -----BSCCTTSCCE
T ss_pred -----CCCCCCCccE
Confidence 2467787776
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=392.81 Aligned_cols=239 Identities=27% Similarity=0.348 Sum_probs=199.3
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
+...+|..+++|+||+|+|||||||++||+|.+. +...+.|.++
T Consensus 19 ~~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------------~~~~~d~~~~------- 62 (278)
T 2b6n_A 19 PLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------------ASSGYDFIDN------- 62 (278)
T ss_dssp SCCSEEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------------EEEEEETTTT-------
T ss_pred CcchhcccCCCCCCCEEEEEeCCCCCCChhHhcc-----------------------------cccCeecCCC-------
Confidence 3566899999999999999999999999999642 1222333221
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
..++.|..||||||||||+|+. .||||+|+|+.+|++++.+ .+..+++++||+|+
T Consensus 63 --------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g---~~~~~~~~~ai~~a 117 (278)
T 2b6n_A 63 --------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSG---SGSNSGVIAGINWV 117 (278)
T ss_dssp --------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHH
T ss_pred --------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCC---CccHHHHHHHHHHH
Confidence 1245688999999999999862 6999999999999998776 57889999999999
Q ss_pred hh--cCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeE
Q 003970 283 LH--DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 283 ~~--~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~ 359 (782)
++ .+++|||||||... ...+..++.++.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 118 ~~~~~g~~Vin~S~G~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------- 183 (278)
T 2b6n_A 118 KNNASGPAVANMSLGGGA------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS-------- 183 (278)
T ss_dssp HHHCCSSEEEEECCCEEC------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------
T ss_pred HhCCCCCeEEEECCCCCc------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC--------
Confidence 98 59999999999873 3567778888899999999999999975432 3445789999998541
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
.+.++.||++||. |||+|||++
T Consensus 184 --------------------------------------------------~~~~~~~S~~G~~--------~di~ApG~~ 205 (278)
T 2b6n_A 184 --------------------------------------------------NDSRSSFSNYGTC--------LDIYAPGSS 205 (278)
T ss_dssp --------------------------------------------------TSBBCTTCCBSTT--------CCEEEECSS
T ss_pred --------------------------------------------------CCCcCCcCCCCCC--------CeEEeCCCC
Confidence 2456899999986 699999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR 585 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~ 585 (782)
|+++++... ..|..++|||||||||||++|||+|++|+|++.|||++|++||++.
T Consensus 206 i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 206 ITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp EEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred eECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 999987532 2799999999999999999999999999999999999999999864
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=391.72 Aligned_cols=238 Identities=26% Similarity=0.323 Sum_probs=201.6
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++..+|..+.+|+||+|+|||||||++||+|.+. +...+.|..
T Consensus 19 ~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~-------- 61 (276)
T 4dzt_A 19 PLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-----------------------------ARVGYDALG-------- 61 (276)
T ss_dssp SCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------------EEEEEETTS--------
T ss_pred CcccceecCCCCCCcEEEEEccCCCCCChhHccC-----------------------------eeccccCCC--------
Confidence 5677999999999999999999999999999632 122222221
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ ....++++++++|+
T Consensus 62 ---------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~ 115 (276)
T 4dzt_A 62 ---------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNG---SGSTSGVIAGVDWV 115 (276)
T ss_dssp ---------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHH
T ss_pred ---------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHH
Confidence 245678999999999999873 6999999999999998776 57899999999999
Q ss_pred hhc--CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc-ccCCCceEEecccccCcccceeE
Q 003970 283 LHD--GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV-QNVAPWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 283 ~~~--gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~d~~~~~~~ 359 (782)
++. +++|||||||... ...+..++.++.++|+++|+||||+|...... +...+++|+|||++.
T Consensus 116 ~~~~~~~~vin~S~g~~~------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------- 181 (276)
T 4dzt_A 116 TRNHRRPAVANMSLGGGV------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS-------- 181 (276)
T ss_dssp HHHCCSSEEEEECCCEEC------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------
T ss_pred HhcCCCCeEEEECCCCCC------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC--------
Confidence 997 8999999999863 45677888889999999999999999754433 455789999998541
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
.+.++.||++||. +||+|||++
T Consensus 182 --------------------------------------------------~~~~~~~S~~g~~--------~dv~ApG~~ 203 (276)
T 4dzt_A 182 --------------------------------------------------SDARASFSNYGSC--------VDLFAPGAS 203 (276)
T ss_dssp --------------------------------------------------TSBBCTTCCBSTT--------CCEEEECSS
T ss_pred --------------------------------------------------CCCcCCcCCCCCC--------ceEEeCCCC
Confidence 3457899999997 599999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~ 586 (782)
|+++++.... .|..++|||||||||||++|||+|++|++++++||++|++||++..
T Consensus 204 i~s~~~~~~~-----------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 204 IPSAWYTSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp EEEECTTSSS-----------CEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred eEccccCCCC-----------ceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 9999876522 7999999999999999999999999999999999999999999764
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=418.24 Aligned_cols=296 Identities=17% Similarity=0.147 Sum_probs=217.4
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++..+|..+++|+||+|||||||||++||+|.+.. .+ ...+.|.+....
T Consensus 25 i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~--~~-------------------------~~~~d~~~~~~~--- 74 (471)
T 1p8j_A 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY--DP-------------------------GASFDVNDQDPD--- 74 (471)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB--CG-------------------------GGCEETTTTBSC---
T ss_pred CChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc--Cc-------------------------cCcccccCCCCC---
Confidence 478889999999999999999999999999997532 00 001222221100
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
..+...+.|..||||||||||||...++. .+.||||+|+|+.+|+++ +..+++++|+++
T Consensus 75 ------p~~~~~~~d~~gHGT~vAGiiaa~~~n~~--------g~~GvAp~a~i~~~rv~~-------g~~~~~~~ai~~ 133 (471)
T 1p8j_A 75 ------PQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLD-------GEVTDAVEARSL 133 (471)
T ss_dssp ------CCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS-------SCCCHHHHHHHH
T ss_pred ------CCCccCCCCCCCcHHHHHHHHHeeccCCC--------CCEEECCCCeEEEEEccC-------CchhHHHHHHHh
Confidence 00112456889999999999999754332 258999999999999985 335689999999
Q ss_pred Hhh-cCCcEEEecccCCCCCCC--CccChHHHHHHhhhc-----cCceEEEecCCCCCCCCC--c--ccCCCceEEeccc
Q 003970 282 ALH-DGVDVISASFGESPPLRP--FFASNADIGSFNAMQ-----HGVTVVFSGGNDGPEPSL--V--QNVAPWSICVAAS 349 (782)
Q Consensus 282 a~~-~gvdVIn~SlG~~~~~~~--~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~ap~vitVgAs 349 (782)
+++ ++++|||||||....... .....+..++.++.+ +|++||+||||+|..... . ...++++|+|||+
T Consensus 134 a~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~ 213 (471)
T 1p8j_A 134 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 213 (471)
T ss_dssp TSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred hhccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecc
Confidence 999 999999999998631000 112233445555543 699999999999965322 1 1235899999985
Q ss_pred ccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHc
Q 003970 350 SIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKA 429 (782)
Q Consensus 350 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~ 429 (782)
+.
T Consensus 214 ~~------------------------------------------------------------------------------ 215 (471)
T 1p8j_A 214 TQ------------------------------------------------------------------------------ 215 (471)
T ss_dssp CT------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 42
Q ss_pred CceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCc
Q 003970 430 NASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDIL 509 (782)
Q Consensus 430 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 509 (782)
.+.++.||++||.. ....
T Consensus 216 ------------------------------------------------------------~g~~a~~S~~g~~~--~~~~ 233 (471)
T 1p8j_A 216 ------------------------------------------------------------FGNVPWYSEACSST--LATT 233 (471)
T ss_dssp ------------------------------------------------------------TSCCCTTCCBCTTC--CEEE
T ss_pred ------------------------------------------------------------CCCcccccCCCCcc--eEEe
Confidence 34568999999985 3455
Q ss_pred ccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCC
Q 003970 510 KPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSH 589 (782)
Q Consensus 510 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g 589 (782)
+|...+||.+|+++.+.+ ..|..++|||||||||||++|||+|++|+|++++||++|++||++.+...
T Consensus 234 ~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~ 301 (471)
T 1p8j_A 234 YSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA 301 (471)
T ss_dssp ECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC
T ss_pred CCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCC
Confidence 666677778999998753 26899999999999999999999999999999999999999999876543
Q ss_pred CccccCCCCCcCCCCCccccccCccccCCCce
Q 003970 590 DSILAGGSMKVSDPFDIGAGHINPMKAMDPGL 621 (782)
Q Consensus 590 ~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~gl 621 (782)
..+... ......+..||||+||+.+|++...
T Consensus 302 ~~~~~n-~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 302 DDWATN-GVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp SCCEEC-TTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred CCceec-CCCcccCCCCCCEEEcHhHHHHHhh
Confidence 222221 1112235689999999999998543
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=407.16 Aligned_cols=246 Identities=22% Similarity=0.205 Sum_probs=187.5
Q ss_pred cCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCC
Q 003970 127 TPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206 (782)
Q Consensus 127 ~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 206 (782)
.|..+.+|+||+|+|||||||++||+|.+.. .+ .+...+.+....
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------~~--------------------~~~~~v~~~dg~-------- 62 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------MV--------------------TDFENVPEEDGT-------- 62 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE-------EE--------------------EEEECCCCCC----------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc-------cc--------------------cCcccccCCCCc--------
Confidence 7888999999999999999999999997432 00 000001000000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc-
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD- 285 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~- 285 (782)
.....+.|..||||||||||+|+. .||||+|+|+.+|+++..+ .++.+++++||+|+++.
T Consensus 63 --~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G---~g~~s~ii~ai~~a~~~~ 123 (546)
T 2qtw_B 63 --RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQG---KGTVSGTLIGLEFIRKSQ 123 (546)
T ss_dssp -------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHHH
T ss_pred --cccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHhh
Confidence 001245688999999999999873 6999999999999998766 57789999999999984
Q ss_pred -----CCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeE
Q 003970 286 -----GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 286 -----gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~ 359 (782)
+++|||||||... ...+..++.++.++|++||+||||+|..... .+...+++|+|||++.+...
T Consensus 124 ~~~~~g~~VINmSlGg~~------s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~---- 193 (546)
T 2qtw_B 124 LVQPVGPLVVLLPLAGGY------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP---- 193 (546)
T ss_dssp HHSCCSCEEEEECEEEEC------CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB----
T ss_pred hhccCCCeEEEecCCCCC------cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc----
Confidence 8999999999762 3567778888999999999999999975432 34557999999996532100
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
...-..||++||. |||+|||++
T Consensus 194 --------------------------------------------------a~~s~~fSn~G~~--------vDI~APG~~ 215 (546)
T 2qtw_B 194 --------------------------------------------------VTLGTLGTNFGRC--------VDLFAPGED 215 (546)
T ss_dssp --------------------------------------------------CEETTEECCBSTT--------CCEEEECSS
T ss_pred --------------------------------------------------ccccCCcCCCCCc--------ceEEecCcc
Confidence 0001238999984 799999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR 585 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~ 585 (782)
|+++++... ..|..++|||||||||||++|||+|++|+|+|+|||++|++||.+.
T Consensus 216 I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 216 IIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp EEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred EEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 999998642 2799999999999999999999999999999999999999999864
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-45 Score=414.77 Aligned_cols=288 Identities=19% Similarity=0.153 Sum_probs=214.5
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++..+|..+++|+||+|||||||||++||+|.+.. +. .+.+.|.++..
T Consensus 41 i~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~--------~~-------------------~~~~d~~~~~~---- 89 (503)
T 2id4_A 41 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF--------CA-------------------EGSWDFNDNTN---- 89 (503)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB--------CG-------------------GGCEETTTTBS----
T ss_pred cChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc--------cc-------------------cCcccCCCCCC----
Confidence 467889999999999999999999999999997542 00 01122222110
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
+.....|..||||||||||||...++. .+.||||+|+|+.+|+++. .+...++++||+|
T Consensus 90 --------~~~p~~d~~gHGT~vAGiiaa~~~n~~--------~~~GvAp~a~i~~~rv~~~-----~~~~~~~~~ai~~ 148 (503)
T 2id4_A 90 --------LPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSG-----DITTEDEAASLIY 148 (503)
T ss_dssp --------CCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTS-----CCCHHHHHHHTTT
T ss_pred --------CCCCCCCCCChHHHHHHHHHhccCCCC--------CcEEECCCCEEEEEEeeCC-----CCChHHHHHHHHh
Confidence 111235788999999999999764332 2479999999999999863 2678899999999
Q ss_pred HhhcCCcEEEecccCCCCCC--CCccChHHHHHHhhh-----ccCceEEEecCCCCCCCCC--ccc--CCCceEEecccc
Q 003970 282 ALHDGVDVISASFGESPPLR--PFFASNADIGSFNAM-----QHGVTVVFSGGNDGPEPSL--VQN--VAPWSICVAASS 350 (782)
Q Consensus 282 a~~~gvdVIn~SlG~~~~~~--~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~--~~~--~ap~vitVgAs~ 350 (782)
|++++ +|||||||...... ......+..++.++. .+|++||+||||+|..... .+. .++++|+|||++
T Consensus 149 a~~~~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~ 227 (503)
T 2id4_A 149 GLDVN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID 227 (503)
T ss_dssp TTTTC-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC
T ss_pred HhhcC-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC
Confidence 99998 99999999863100 111233555666665 4799999999999965322 222 357899999854
Q ss_pred cCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcC
Q 003970 351 IDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKAN 430 (782)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~G 430 (782)
.
T Consensus 228 ~------------------------------------------------------------------------------- 228 (503)
T 2id4_A 228 H------------------------------------------------------------------------------- 228 (503)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred ceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcc
Q 003970 431 ASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILK 510 (782)
Q Consensus 431 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 510 (782)
.+.++.||++||..
T Consensus 229 -----------------------------------------------------------~~~~a~~S~~g~~~------- 242 (503)
T 2id4_A 229 -----------------------------------------------------------KDLHPPYSEGCSAV------- 242 (503)
T ss_dssp -----------------------------------------------------------TSCCCTTCCCCTTE-------
T ss_pred -----------------------------------------------------------CCCcCCcCCCCCcc-------
Confidence 33568999999984
Q ss_pred cceee----cCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 003970 511 PDITA----PGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 511 PDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~ 586 (782)
|++| ||..|+++...+ ..|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 243 -~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~ 309 (503)
T 2id4_A 243 -MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLE 309 (503)
T ss_dssp -EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCT
T ss_pred -eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Confidence 8887 899999995432 17999999999999999999999999999999999999999999876
Q ss_pred CC-CCccccCCCCCcCCCCCccccccCccccCCCce
Q 003970 587 TS-HDSILAGGSMKVSDPFDIGAGHINPMKAMDPGL 621 (782)
Q Consensus 587 ~~-g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~gl 621 (782)
.. ...+.. .......+..||||+||+.+|++...
T Consensus 310 ~~~~~~~~~-~~~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 310 KNADGDWRD-SAMGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp TCGGGCCEE-CSSSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred CCcCCCcee-cCCCCccCcccCCcEecHHHHHHHHh
Confidence 43 111111 11112234579999999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=381.49 Aligned_cols=230 Identities=26% Similarity=0.322 Sum_probs=193.9
Q ss_pred ccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCC
Q 003970 126 VTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNA 205 (782)
Q Consensus 126 ~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 205 (782)
.+|... +|+||+|+|||||||++||+|.+. +...+.|..
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~----------- 62 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR-----------------------------AKQIKSYAS----------- 62 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEECSS-----------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc-----------------------------cccccCCCC-----------
Confidence 466665 999999999999999999999643 222222221
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc
Q 003970 206 STNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD 285 (782)
Q Consensus 206 ~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 285 (782)
...|..||||||||||+|+. .||||+|+|+.+|+++..+ .+..+++++||+|++++
T Consensus 63 -------~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 118 (279)
T 3f7m_A 63 -------TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSG---SGSLSNIIAGMDFVASD 118 (279)
T ss_dssp -------SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCC---CcCHHHHHHHHHHHHhc
Confidence 22378999999999999863 6999999999999998776 58899999999999998
Q ss_pred C-------CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc-ccCCCceEEecccccCcccce
Q 003970 286 G-------VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV-QNVAPWSICVAASSIDRTFPT 357 (782)
Q Consensus 286 g-------vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~d~~~~~ 357 (782)
+ ++|||||||.. ....+..++.++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 119 ~~~~~~~~~~Vin~S~g~~------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------ 186 (279)
T 3f7m_A 119 RQSRNCPRRTVASMSLGGG------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------ 186 (279)
T ss_dssp GGGSCCTTEEEEEECCCEE------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------
T ss_pred cccccCCCCeEEEeCCCcC------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC------
Confidence 6 89999999976 345677888889999999999999999764433 455789999998542
Q ss_pred eEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEe
Q 003970 358 EIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFA 437 (782)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~ 437 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecC
Q 003970 438 EPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPG 517 (782)
Q Consensus 438 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 517 (782)
.+.++.||++||. |||+|||
T Consensus 187 ----------------------------------------------------~~~~~~~S~~g~~--------~di~ApG 206 (279)
T 3f7m_A 187 ----------------------------------------------------NDVRSTFSNYGRV--------VDIFAPG 206 (279)
T ss_dssp ----------------------------------------------------TSBBCTTCCBSTT--------CCEEEEC
T ss_pred ----------------------------------------------------CCCCCCCCCCCCC--------CeEEECC
Confidence 3457899999996 5999999
Q ss_pred ceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 003970 518 IGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~ 586 (782)
++|+++++.+ .|..++|||||||||||++|||+|++|+ ++++||++|++||.+..
T Consensus 207 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 207 TSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp SSEEEECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred CCeEeecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 9999999875 7899999999999999999999999999 99999999999998743
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=409.38 Aligned_cols=301 Identities=21% Similarity=0.182 Sum_probs=202.4
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++..+|..+++|+||+|||||||||++||||.++- . .+.++|..+..
T Consensus 57 inv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--~--------------------------~~~~~~~~~~~---- 104 (600)
T 3hjr_A 57 LNLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--R--------------------------PGSKNVVTGSD---- 104 (600)
T ss_dssp CCCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--C--------------------------SCCBCTTTSSS----
T ss_pred cCHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--c--------------------------cCcceeecCCC----
Confidence 467889999999999999999999999999997531 0 01112221110
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHH-H
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAF-D 280 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai-~ 280 (782)
+..+..|.+||||||||||||.. ++. .+.||||+|+|+.+|++++.+ .+..++++.|+ +
T Consensus 105 --------dp~p~~~~~gHGThVAGiIAa~~-n~~--------g~~GVAp~A~l~~~rvl~~~~---~~~~~~~~~a~~~ 164 (600)
T 3hjr_A 105 --------DPTPTDPDTAHGTSVSGIIAAVD-NAI--------GTKGIAPRAQLQGFNLLDDNS---QQLQKDWLYALGD 164 (600)
T ss_dssp --------CCCCCSTTCCHHHHHHHHHHCCS-SSS--------SCCCSSTTCEEEEECTTSTTC---CCCHHHHHHHTTS
T ss_pred --------CCCCCCCCCChHHHHHHHHhEeC-CCC--------CcEEeCCCCEEEEEEeecCCC---CccHHHHHHHhhh
Confidence 11223457899999999999863 211 248999999999999998776 46777777776 6
Q ss_pred HHhhcCCcEEEecccCCCCCCCCccCh----HHHHHHh--hhccCceEEEecCCCCCCCCC-------------------
Q 003970 281 DALHDGVDVISASFGESPPLRPFFASN----ADIGSFN--AMQHGVTVVFSGGNDGPEPSL------------------- 335 (782)
Q Consensus 281 ~a~~~gvdVIn~SlG~~~~~~~~~~~~----~~~a~~~--a~~~Gi~vV~AAGN~G~~~~~------------------- 335 (782)
++..++++|||+|||............ +..++.. ...+|+++|+||||.+.....
T Consensus 165 ~~~~~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~ 244 (600)
T 3hjr_A 165 SNASRDNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENS 244 (600)
T ss_dssp SHHHHTCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBT
T ss_pred hhhhcCCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccc
Confidence 778889999999999763211111111 1112211 236899999999997632100
Q ss_pred ---cccCCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEee
Q 003970 336 ---VQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFS 412 (782)
Q Consensus 336 ---~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~ 412 (782)
.....+++|+|||+
T Consensus 245 ~~d~~~~~~~~IsVgA~--------------------------------------------------------------- 261 (600)
T 3hjr_A 245 NLDPSNSNFWNLVVSAL--------------------------------------------------------------- 261 (600)
T ss_dssp TSSGGGGSSSEEEEEEE---------------------------------------------------------------
T ss_pred cccCccccCcceEEeee---------------------------------------------------------------
Confidence 00012233333332
Q ss_pred CCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCc
Q 003970 413 TMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPT 492 (782)
Q Consensus 413 g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 492 (782)
...+.
T Consensus 262 ---------------------------------------------------------------------------~~~g~ 266 (600)
T 3hjr_A 262 ---------------------------------------------------------------------------NADGV 266 (600)
T ss_dssp ---------------------------------------------------------------------------CTTSS
T ss_pred ---------------------------------------------------------------------------cCCCC
Confidence 12456
Q ss_pred cccccCCCCCCCCCCCcccceeecCce--------EEeecCCCCCCC-------------CCCCCCCccceeeeccccch
Q 003970 493 VAYFSSRGPSSISPDILKPDITAPGIG--------VLAAWPPNTPPT-------------LLPSDGRSVKWNFQSGTSMS 551 (782)
Q Consensus 493 ~a~fSS~Gp~~~~~~~~KPDI~APG~~--------I~sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmA 551 (782)
++.||++|+.. +++|||.+ +....++..... ..........|..++|||||
T Consensus 267 ~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmA 338 (600)
T 3hjr_A 267 RSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSA 338 (600)
T ss_dssp BCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHH
T ss_pred EeecccCCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceecccccccc
Confidence 78999999985 88999875 222222211000 00112233468899999999
Q ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc--------------------cCCCCCcCCCCCcccccc
Q 003970 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSIL--------------------AGGSMKVSDPFDIGAGHI 611 (782)
Q Consensus 552 aP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~--------------------~~~~~~~~~~~~~G~G~v 611 (782)
||||||++|||+|+||+|+++|||++|++||++++....|+. ....+. .....||||+|
T Consensus 339 aP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~-~~s~~yGfG~v 417 (600)
T 3hjr_A 339 TPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGM-WFSPTYGFGLI 417 (600)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSC-EEBTTTBTCBC
T ss_pred chhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCc-eEccccCCcee
Confidence 999999999999999999999999999999999887655421 111111 12457999999
Q ss_pred CccccCCCce
Q 003970 612 NPMKAMDPGL 621 (782)
Q Consensus 612 n~~~Al~~gl 621 (782)
|+.+|++...
T Consensus 418 DA~~aV~~A~ 427 (600)
T 3hjr_A 418 DVNKALELAA 427 (600)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 9999987443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-24 Score=247.27 Aligned_cols=97 Identities=25% Similarity=0.398 Sum_probs=75.7
Q ss_pred ceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhh---cCCcEEEecccCCCCCCCC---ccChHHHHHHhhhcc
Q 003970 245 IARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALH---DGVDVISASFGESPPLRPF---FASNADIGSFNAMQH 318 (782)
Q Consensus 245 ~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~---~gvdVIn~SlG~~~~~~~~---~~~~~~~a~~~a~~~ 318 (782)
.+.||||+|+|+.|++. ...++++++|+||++ ++++|||+|||... ..+ +...+..++.+|..+
T Consensus 273 ~~~gvAp~a~i~~~~~~--------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e--~~~~~~~~~~~~~~~~~a~~~ 342 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP--------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPE--DSWAPASIAAMNRAFLDAAAL 342 (552)
T ss_dssp HHHHHCTTSEEEEEECC--------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEG--GGSCHHHHHHHHHHHHHHHHT
T ss_pred hhhccCCCCeEEEEEcC--------CCCchHHHHHHHHHhcccCCCCEEEecccCCc--ccCCHHHHHHHHHHHHHHHhC
Confidence 46899999999999972 346789999999998 79999999999873 111 123455666778899
Q ss_pred CceEEEecCCCCCCCC--------CcccCCCceEEeccccc
Q 003970 319 GVTVVFSGGNDGPEPS--------LVQNVAPWSICVAASSI 351 (782)
Q Consensus 319 Gi~vV~AAGN~G~~~~--------~~~~~ap~vitVgAs~~ 351 (782)
||+||+||||+|.... ..+...|+|++||+++.
T Consensus 343 Gi~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 343 GVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp TCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred CeEEEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999999996532 23345799999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-21 Score=207.39 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=77.5
Q ss_pred eeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhh-cCCcEEEecccCCCC--CCCCccChHHHHHHhhhccCceEE
Q 003970 247 RGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALH-DGVDVISASFGESPP--LRPFFASNADIGSFNAMQHGVTVV 323 (782)
Q Consensus 247 ~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~--~~~~~~~~~~~a~~~a~~~Gi~vV 323 (782)
..+||+++++.|++.+... +..++++++|+||++ ++++|||+|||.... ....+...+..++.+|..+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~~----~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv 165 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSA----SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFS 165 (372)
T ss_dssp HHTTSCEEEEEEEEECTTS----STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEE
T ss_pred hhcCCCCcEEEEEeCCCCC----cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 4578999999999986543 678899999999998 899999999998630 001122345666777889999999
Q ss_pred EecCCCCCCCC-------------CcccCCCceEEeccccc
Q 003970 324 FSGGNDGPEPS-------------LVQNVAPWSICVAASSI 351 (782)
Q Consensus 324 ~AAGN~G~~~~-------------~~~~~ap~vitVgAs~~ 351 (782)
+||||+|...+ ..+...|+|++||+++.
T Consensus 166 ~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 166 VSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp EECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred EEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 99999997532 23345799999999764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-10 Score=126.57 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred eeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh--hcCCcEEEecccCCCC-CCCCccChHHHHHHhhhccCceE
Q 003970 246 ARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL--HDGVDVISASFGESPP-LRPFFASNADIGSFNAMQHGVTV 322 (782)
Q Consensus 246 ~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~--~~gvdVIn~SlG~~~~-~~~~~~~~~~~a~~~a~~~Gi~v 322 (782)
+.++++...++.|...+. ....+.+++.+++.. .+-++|||+|||.... ....+...+...+.++..+||.|
T Consensus 261 a~a~~~~i~~~~~~~~g~-----~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv 335 (544)
T 3edy_A 261 LMSAGANISTWVYSSPGR-----HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTL 335 (544)
T ss_dssp HHHHSTTSEEEEECCCSC-----CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HhccCCCceEEEEecCCc-----ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 345555666655543211 112234555454443 3467899999998831 00011123445556778999999
Q ss_pred EEecCCCCCCCC----------CcccCCCceEEeccccc
Q 003970 323 VFSGGNDGPEPS----------LVQNVAPWSICVAASSI 351 (782)
Q Consensus 323 V~AAGN~G~~~~----------~~~~~ap~vitVgAs~~ 351 (782)
++|+||+|.... ..+...|||++||+++.
T Consensus 336 ~~ASGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 336 LFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp EEECCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred EEecCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999999997532 23445799999999864
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=98.00 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEeccee
Q 003970 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVL 105 (782)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~ 105 (782)
.++.|||+|++... ......|.+++.+++.+ .....++.|+|++.|+||+++|+++++++|+++|+|.+|++|+.+
T Consensus 36 ip~~YIV~lk~~~~---~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v 111 (114)
T 2w2n_P 36 LPGTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 111 (114)
T ss_dssp EEEEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred CCCcEEEEECCCCC---HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence 45789999998642 33445788888887654 224567999999999999999999999999999999999999987
Q ss_pred ec
Q 003970 106 KL 107 (782)
Q Consensus 106 ~~ 107 (782)
+.
T Consensus 112 ~~ 113 (114)
T 2w2n_P 112 FA 113 (114)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-08 Score=83.93 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred CCCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecce
Q 003970 25 TASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQV 104 (782)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~ 104 (782)
..++.|||+|++... .. ..+.++++. ...++.|+|++ |+||+++++++++++|+++|+|.+|++++.
T Consensus 6 ~i~~~YIV~~k~~~~--~~---~~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFK--SC---AKKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp --CCEEEEEECTTCC--SH---HHHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred cCCCCEEEEECCCCC--hH---HHHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 346899999998642 11 112233322 23468999998 999999999999999999999999999999
Q ss_pred eeccccc
Q 003970 105 LKLHTTR 111 (782)
Q Consensus 105 ~~~~~~~ 111 (782)
++++++.
T Consensus 73 v~~~tt~ 79 (80)
T 3cnq_P 73 YRALSAT 79 (80)
T ss_dssp EEECCC-
T ss_pred EEEeeec
Confidence 9987654
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-07 Score=89.37 Aligned_cols=100 Identities=13% Similarity=-0.012 Sum_probs=77.3
Q ss_pred eeEEEccccccCCccccCCCCCCC-------CCceEEEEeeCC-CCccHHHHHHHHHHcCceEEEEecCCC------ccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRK-------ATGRVVLCFSTM-GSVKTEEAEAAAKKANASGLIFAEPMT------ELI 444 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~-------~~gkiv~~~~g~-~~~~~~~k~~~~~~~Ga~g~i~~n~~~------~~~ 444 (782)
-.++..........|.+....... .+|||+|++||+ |. |.+|+.+++++||.++||||+.. .+.
T Consensus 72 G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~Cs--F~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~ 149 (194)
T 3icu_A 72 GVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCT--FADKIHLAYERGASGAVIFNFPGTRNEVIPMS 149 (194)
T ss_dssp EEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCC--HHHHHHHHHHTTCSEEEEECCTTCTTCCCCCC
T ss_pred EEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcC--HHHHHHHHHHCCCcEEEEEeCCCCCCceeeec
Confidence 455555443456799887653222 578999999999 97 99999999999999999999742 222
Q ss_pred -cccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccC
Q 003970 445 -AEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPS 481 (782)
Q Consensus 445 -~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~ 481 (782)
.....||+++|+..+|+.|++++. .+...+++|...
T Consensus 150 ~~~~~~IPsv~Is~~~G~~L~~~L~-~G~~Vtvti~vg 186 (194)
T 3icu_A 150 HPGAVDIVAIMIGNLKGTKILQSIQ-RGIQVTMVIEVG 186 (194)
T ss_dssp CTTCCSSEEEEECHHHHHHHHHHHH-TTCCEEEEEEEE
T ss_pred CCCCCceeEEEECHHHHHHHHHHHH-CCCeEEEEEECC
Confidence 233579999999999999999999 777777777554
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.56 E-value=8.8e-08 Score=87.06 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEeccee
Q 003970 26 ASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVL 105 (782)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~ 105 (782)
.++.|||+||+... ......|.+.+..+.... ....++.|+|++.|+||+++++++++++|+++|+|.+|++++.+
T Consensus 46 Ip~~YIV~~K~~~~---~~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v 121 (124)
T 2qtw_A 46 LPGTYVVVLKEETH---LSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 121 (124)
T ss_dssp EEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred CCCCEEEEECCCCC---HHHHHHHHHHHHHHHhhc-ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence 35789999998642 233344445554432110 02346899999999999999999999999999999999999987
Q ss_pred ec
Q 003970 106 KL 107 (782)
Q Consensus 106 ~~ 107 (782)
+.
T Consensus 122 ~a 123 (124)
T 2qtw_A 122 FA 123 (124)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.9e-07 Score=73.95 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=56.2
Q ss_pred ceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEee-eeeeeEEEEeCHHHHHHHhcC--cCeEEEEecce
Q 003970 28 HVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYK-YSFSGFSAKLNSSQAASLAEM--EEVISIFESQV 104 (782)
Q Consensus 28 ~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~s~~l~~~~~~~L~~~--p~V~~V~~~~~ 104 (782)
+.|||.||+.. +......|.+++...- .++.+.|. ..|+||+++++++++++|+++ |.|.+||+|+.
T Consensus 3 ~sYIV~lk~~~---~~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~ 72 (76)
T 1v5i_B 3 GKFIVIFKNDV---SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (76)
T ss_dssp EEEEEEECTTC---CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred ceEEEEECCCC---CHHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence 67999999863 2344455666666542 35889994 799999999999999999999 88999999998
Q ss_pred eec
Q 003970 105 LKL 107 (782)
Q Consensus 105 ~~~ 107 (782)
++.
T Consensus 73 v~~ 75 (76)
T 1v5i_B 73 AHA 75 (76)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00078 Score=53.57 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=48.5
Q ss_pred ceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecceee
Q 003970 28 HVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLK 106 (782)
Q Consensus 28 ~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 106 (782)
-+|||.|++.. .. .++ ......++.++|. .+++++++|+++.+++|+++|+|.+|++|...+
T Consensus 2 ~~~IV~f~~~~-~~--------~~~-------i~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAK-FN--------PHE-------VLGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGG-CC--------GGG-------GGGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcc-hh--------HHH-------HHHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 47999998741 10 011 2233457899997 899999999999999999999999999998765
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0085 Score=66.28 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-----ccc-cccccccEEEEehhhHHHHHHHHh
Q 003970 397 NWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-----ELI-AEVDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 397 ~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-----~~~-~~~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
++...+++|||+++.++.|. |.+|..+++++||.|+|++|+.. .+. .....+|.+.++.++++.|++++.
T Consensus 107 D~~~~dv~GkIvlv~~g~~~--~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 107 DVAGKDLNGKIALIQRGNIS--FADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTSCCTTSEEEEECCSSC--HHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hcCCCCcCceEEEEeCCCCC--HHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 34445899999999999986 99999999999999999999854 111 134679999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.052 Score=60.29 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=64.9
Q ss_pred eeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc-------cHHHH----HHHHHHcCceEEEEecCCC-----
Q 003970 378 KAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV-------KTEEA----EAAAKKANASGLIFAEPMT----- 441 (782)
Q Consensus 378 ~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~-------~~~~k----~~~~~~~Ga~g~i~~n~~~----- 441 (782)
..++|+..+ ...|.. ....+++||||++.++.|.. .+..| ..+++++||+++|++|+..
T Consensus 107 ta~lV~v~~---~~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~ 181 (444)
T 3iib_A 107 SATIVRFDT---LQDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRM 181 (444)
T ss_dssp EEEEEEESS---HHHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSC
T ss_pred EEEEEecCC---HHHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCccccc
Confidence 367776542 112322 23568999999999988741 13333 4679999999999998643
Q ss_pred ----cc--ccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEc
Q 003970 442 ----EL--IAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLK 479 (782)
Q Consensus 442 ----~~--~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~ 479 (782)
.+ ......+|++.|+.++++.|...+. .+....+++.
T Consensus 182 ~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~-~g~~~~v~l~ 224 (444)
T 3iib_A 182 AHTGMMRYEEGVTAIPAAAISNPDADLINAMLK-RDKEVVISLE 224 (444)
T ss_dssp CCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHT-TTCCCEEEEE
T ss_pred ccCCccccCCCCCCCCeEEecHHHHHHHHHHHh-CCCCeEEEEE
Confidence 01 1123579999999999999999987 5444444443
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.053 Score=62.73 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=53.5
Q ss_pred CCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc--c--------------cc-------------------
Q 003970 401 RKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE--L--------------IA------------------- 445 (782)
Q Consensus 401 ~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~--------------~~------------------- 445 (782)
.+++|||+|+.+|.|. +.+|..+++++||.|+|++++... . ..
T Consensus 128 vdv~GkIvlv~~g~~~--~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~ 205 (640)
T 3kas_A 128 TPVNGSIVIVRAGKIT--FAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR 205 (640)
T ss_dssp SCCTTSEEEEESCSSC--HHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCS
T ss_pred cccCCcEEEEecCCCC--HHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccc
Confidence 4799999999999886 999999999999999999997531 0 00
Q ss_pred --ccccccEEEEehhhHHHHHHHHh
Q 003970 446 --EVDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 446 --~~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
....||++.|+.+++..|+..+.
T Consensus 206 ~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 206 SSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCEEecCHHHHHHHHHHcc
Confidence 01368999999999999987554
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.35 E-value=0.048 Score=63.81 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=54.8
Q ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC------------------------cc-----ccc----
Q 003970 400 GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT------------------------EL-----IAE---- 446 (782)
Q Consensus 400 ~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~------------------------~~-----~~~---- 446 (782)
..+++|||+|+++|.|. |.+|..+|+++||.|+||||+.. .+ ..+
T Consensus 150 ~~~v~GkIvlv~~G~~~--~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TP 227 (707)
T 3fed_A 150 GINCTGKIVIARYGKIF--RGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTP 227 (707)
T ss_dssp CCCCTTCEEEEECCSSC--HHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCT
T ss_pred CCCCCCeEEEEECCCCC--HhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCC
Confidence 45799999999999975 99999999999999999998621 00 011
Q ss_pred ------------------cccccEEEEehhhHHHHHHHHh
Q 003970 447 ------------------VDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 447 ------------------~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
...||++.|+..++..|+..+.
T Consensus 228 G~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 228 GYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp TSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred CCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 2468999999999999998765
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.34 Score=43.25 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=51.6
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEEEEE-cCceEEE
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWS-DGFHYVR 761 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~-~~~~~v~ 761 (782)
.+.+.+.+|+|+|.. +..|+.....| .+++|....+ .+||+..++|+|.+.. . +.+.+.|.+. ++...+.
T Consensus 41 ~~~~~~~~l~N~g~~-~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~~--~-g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 41 YSTQKILLVRNIGNK-NAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQS--V-GDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SCEEEEEEEECCSSS-CEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCSS--S-BCCCCBCEEEESSSCEEC
T ss_pred CeEEEEEEEEECCCC-CEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcCC--C-ccEEEEEEEEECCCCEEE
Confidence 567778889999987 88888776443 6678999988 6899999999999742 2 2234555543 4445554
Q ss_pred eEE
Q 003970 762 SPL 764 (782)
Q Consensus 762 ~P~ 764 (782)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 444
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.35 E-value=0.28 Score=60.50 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.9
Q ss_pred CCCCCCCcEEEEeccccCCCCCCCC
Q 003970 130 QLAYGDDIVVGIFDTGVWPESESFQ 154 (782)
Q Consensus 130 ~~~~G~gV~VgVIDtGId~~Hp~f~ 154 (782)
..+.|+||+|||+|||||+.+|-|+
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCCccEEEEEeCCCCCCCCcce
Confidence 3678999999999999999999985
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=85.29 E-value=2 Score=47.38 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.8
Q ss_pred CCCccccccCCCCCCCCCCCcccceeecCceEEeecCCC
Q 003970 489 PAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPN 527 (782)
Q Consensus 489 ~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 527 (782)
..+.++.||++||. +||+|||++|+++++.+
T Consensus 182 ~~~~~~~~S~~g~~--------vdv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQ--------VEISGPGEAILSTVTVG 212 (441)
T ss_dssp TTCCBCTTSCCCTT--------EEEEEECSSEEEECSTT
T ss_pred CCCCCCccccCCCc--------eEEEeccCCeeccccCC
Confidence 35678999999986 69999999999998854
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.99 E-value=8.6 Score=34.96 Aligned_cols=85 Identities=13% Similarity=-0.157 Sum_probs=57.5
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCC----CccEEEEEcceeEeccCCeEEEEEEEEEeccc-----CCC-ceEEEEEE
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKP----GGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKM-----SQG-RFDFGQIV 752 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p----~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~-----~~~-~~~~G~~~ 752 (782)
...+-+.+|+|.|.. +.+|++..... ..--++++|..-++ .+|++.+++|++..... ..+ .-+.--|+
T Consensus 43 ~~~~~~l~I~Ntg~v-pa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLv 120 (140)
T 3qbt_B 43 QLQKEKFQISNNGQV-PCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 120 (140)
T ss_dssp CCEEEEEEEEECSSS-CEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEE
T ss_pred eeeeeEEEEEcCCcc-ceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEE
Confidence 345666778999998 99999874321 11236778999888 78999999999986421 011 22344566
Q ss_pred EE-cCceEEEeEEEEEEc
Q 003970 753 WS-DGFHYVRSPLVVFVN 769 (782)
Q Consensus 753 ~~-~~~~~v~~P~~~~~~ 769 (782)
+. +++....+|+...+.
T Consensus 121 L~Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 121 LHLDRGKDYFLTISGNYL 138 (140)
T ss_dssp EEETTSCEEEEEEEEEEC
T ss_pred EEeecCCcEEEEEecccc
Confidence 54 667778888876653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 782 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-42 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 7e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-04 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-14 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 5e-04 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-14 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-13 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-13 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-12 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 5e-12 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 4e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 9e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 7e-06 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 2e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 1e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 157 bits (398), Expect = 2e-42
Identities = 81/491 (16%), Positives = 145/491 (29%), Gaps = 91/491 (18%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
+ + I D+G + G
Sbjct: 21 AGNRTICIIDSGYDRSHNDLN----------------------------ANNVTGT---- 48
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
N S + + HGTH A T A A N G G+ P
Sbjct: 49 ----------NNSGTGNWYQPGNNNAHGTHVAGTIAAI-ANNEGVVGV--------MPNQ 89
Query: 254 RLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSF 313
++ + ++ + + + A G +V++ S G S +
Sbjct: 90 NANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTH--- 146
Query: 314 NAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFI 373
+GV ++ + GN G + VAA + + FS + +
Sbjct: 147 --YNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDH-------AAFSQYTDQ-V 196
Query: 374 STEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASG 433
+ + + +G G+ V+ + + T A A +
Sbjct: 197 EISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGA 256
Query: 434 LIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTV 493
L + ++ + + G Q Y ++ +K +
Sbjct: 257 LAECTVNGTSFSCGNMANKICLVERVGNQGSSY---------PEINSTKACKTAGAKGII 307
Query: 494 AYFSSRGPSSISPDIL--KPDITAPGIGVLAAWP----PNTPPTLLPSDGRSVKWNFQSG 547
Y +S P +P ++ DIT P + V A + S+ + + + +G
Sbjct: 308 VYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNG 367
Query: 548 TSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG 607
TSM+ PHVSGV L+ S HP S + +R+AL TA + G
Sbjct: 368 TSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA------------GRDNQTG 415
Query: 608 AGHINPMKAMD 618
G IN + A
Sbjct: 416 YGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 79.3 bits (194), Expect = 7e-16
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 490 APTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSV-----KWNF 544
A Y + + S + APG+ +L+ P + +++
Sbjct: 317 AALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376
Query: 545 QSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPF 604
GTSM+ PHV+GVVA++ PN P IR L TA+ + +
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN------------GWDH 424
Query: 605 DIGAGHINPMKAMDPGL 621
D G G + A+ L
Sbjct: 425 DTGYGLVKLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 41/223 (18%), Positives = 63/223 (28%), Gaps = 57/223 (25%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G +I+V + DTGV +G + G + +
Sbjct: 153 GTNIIVAVVDTGVDGTHPDL-------------EGQVIAGYRPAFDEELP---------- 189
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
+ GTH A T A G AP A
Sbjct: 190 ----------------AGTDSSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGA 224
Query: 254 RLAVYKICW---GKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADI 310
++ I +G + + A A G V++ S+G ++
Sbjct: 225 KIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG-----WGYSYTMKE 279
Query: 311 GSFNAMQHGVTVVFSGGNDGPEPSLVQ-NVAPWSICVAASSID 352
AM+HGV +V S GN+ + P I VAA
Sbjct: 280 AFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 72.2 bits (176), Expect = 2e-14
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 36/127 (28%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FSS GP + D+ APG+ + + P N + +GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGNK-------------YGAYNGTSMA 223
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G ALI S HPNW+ +RS+L T K+ D F G G I
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTT---------------TKLGDSFYYGKGLI 268
Query: 612 NPMKAMD 618
N A
Sbjct: 269 NVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 43/244 (17%), Positives = 64/244 (26%), Gaps = 60/244 (24%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
G ++ V + D+G+ K+ G V
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------------KVAGGASMV 51
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
E +D HGTH A T G AP A
Sbjct: 52 --------------PSETNPFQDNNSHGTHVAGT---------VAALNNSIGVLGVAPSA 88
Query: 254 RLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSF 313
L K+ +DG + I+ + A+ + +DVI+ S G P + D
Sbjct: 89 SLYAVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLG-GPSGSAALKAAVDKAVA 144
Query: 314 NAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNS--DFSIVGES 371
+ + G + P I V A + V D G S
Sbjct: 145 SGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVS 204
Query: 372 FIST 375
ST
Sbjct: 205 IQST 208
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 70.7 bits (172), Expect = 6e-14
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 28/123 (22%)
Query: 494 AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCP 553
A S+ +S S + ++ APG GV + +P NT + +GTSM+ P
Sbjct: 178 AVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 554 HVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINP 613
HV+G ALI S HPN S + +R+ L +TA + F G G IN
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA---------------TYLGSSFYYGKGLINV 269
Query: 614 MKA 616
A
Sbjct: 270 EAA 272
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 69.6 bits (169), Expect = 1e-13
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 36/126 (28%)
Query: 492 TVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMS 551
A FS G DI APG+ V + +P +T + +GTSM+
Sbjct: 179 NRASFSQYGAG--------LDIVAPGVNVQSTYPGST-------------YASLNGTSMA 217
Query: 552 CPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611
PHV+G AL+K +P+WS IR+ L TA + +++ G+G +
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN---------------LYGSGLV 262
Query: 612 NPMKAM 617
N A
Sbjct: 263 NAEAAT 268
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 69.9 bits (169), Expect = 2e-13
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 510 KPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNW 569
+I+APG V + W +N SGTSM+ PHVSG+ A I + +P+
Sbjct: 224 DIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 570 SPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHIN 612
S +RS L A + D A G D + G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIG-----DDYASGFGFAR 308
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581
+ ++ +D R +GTS S P +G++AL A+ N + ++ ++ T
Sbjct: 233 YSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQT 292
Query: 582 AYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMD 618
+ + D G + G G ++ +
Sbjct: 293 SKPAHLNADDWATNGVGRKVSHS-YGYGLLDAGAMVA 328
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 66.1 bits (159), Expect = 3e-12
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 495 YFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPH 554
FSSRGP+ +KPD+ APG +L+A P + ++ K+ + GTSM+ P
Sbjct: 204 QFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHD-SKYAYMGGTSMATPI 260
Query: 555 VSGVVALIKSAHP-----NWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609
V+G VA ++ P+ +++AL+ A + G G
Sbjct: 261 VAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG------------YPNGNQGWG 308
Query: 610 HINPMKAMD 618
+ K+++
Sbjct: 309 RVTLDKSLN 317
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 5e-12
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 542 WNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS 601
N GTS + P +GV L+ A+PN + ++ + +A + + D +M
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 602 DPFDIGAGHINPMKAMD 618
G G I+ K ++
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 56.3 bits (134), Expect = 4e-09
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 541 KWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHD 590
SGTSM+ PHV+G+ A + + + +A R + TA D S+
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNI 264
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 48.8 bits (115), Expect = 9e-07
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 526 PNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR 585
P + S ++ + SGTSM+ PHV+G+ AL+ S + IR A+ TA +
Sbjct: 203 VVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTA-DK 259
Query: 586 DTSHDSILAGGSMKVSDPFDIGAGHINPMKAMD 618
+ + G IN A+
Sbjct: 260 ISGTGT-------------YFKYGRINSYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 42/216 (19%), Positives = 57/216 (26%), Gaps = 60/216 (27%)
Query: 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYV 193
+ + DTGV G ++G F
Sbjct: 30 SSGQEIAVIDTGVDYTHPDL-------------DGKVIKGYDFVDNDYDPM--------- 67
Query: 194 KGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRA 253
D HGTH A AA G G+ AP
Sbjct: 68 ----------------------DLNNHGTHVAGIAAAETNNATGIAGM--------APNT 97
Query: 254 RLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSF 313
R+ + D +G T +DI A A G +VI+ S G +
Sbjct: 98 RILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAV-----N 149
Query: 314 NAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAAS 349
A G VV + GN+G + I V A
Sbjct: 150 YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAV 185
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 46.2 bits (108), Expect = 7e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 542 WNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS 601
+ SGTSM+ PHV+GV L+ S S + IR+A+ TA + + +
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTA-DKISGTGT---------- 264
Query: 602 DPFDIGAGHINPMKAMD 618
G +N KA+
Sbjct: 265 ---YWAKGRVNAYKAVQ 278
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 21/139 (15%), Positives = 34/139 (24%), Gaps = 16/139 (11%)
Query: 196 FEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARL 255
F G L + + ++ + L G A A
Sbjct: 47 FTSANG-LASVNTQTIQTGSSNGDYSDDQQGQGEWD---------LDSQSIVGSAGGAVQ 96
Query: 256 AVYKICWGKDSDGKCTEADILAAFDDALHD-GVDVISASFGESPPLRPFFASNADIGSF- 313
+ + AF+ A+ D VI+ S G +
Sbjct: 97 QLLFYM---ADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIF 153
Query: 314 -NAMQHGVTVVFSGGNDGP 331
A G T S G++G
Sbjct: 154 ATAAAQGQTFSVSSGDEGV 172
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 11/128 (8%)
Query: 488 VPAPTVAYFSSRGPSSIS--PDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQ 545
+ + + + G S P PG +L + +
Sbjct: 223 LDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQI 282
Query: 546 SGTSMSCPHVSGVVALIKSAHPN----WSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS 601
GTS++ P G+ A ++SA+ N + + + T + D + +G +
Sbjct: 283 GGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHD-----VKSGNNGYGG 337
Query: 602 DPFDIGAG 609
++ G G
Sbjct: 338 YGYNAGTG 345
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.93 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.64 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.43 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.41 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.72 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 94.44 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=5.1e-52 Score=487.39 Aligned_cols=370 Identities=24% Similarity=0.215 Sum_probs=263.5
Q ss_pred CceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHH----HH--HhcCcCeEEEE
Q 003970 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQA----AS--LAEMEEVISIF 100 (782)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~----~~--L~~~p~V~~V~ 100 (782)
+.+|||+|++. ....++++++- .++++++. .++.+.++++...+ +. +..+|+|++|+
T Consensus 31 ~~~~iV~~k~~---------~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ve 93 (671)
T d1r6va_ 31 EGKILVGYNDR---------SEVDKIVKAVN-------GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVE 93 (671)
T ss_dssp TTEEEEEESSH---------HHHHHHHHHHT-------CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEE
T ss_pred CCeEEEEECCc---------cCHHHHHHhcC-------CEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEEC
Confidence 56899999974 22333444332 23455555 45666777654322 22 23589999999
Q ss_pred ecceeecccc----cc-----------------------cccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCC
Q 003970 101 ESQVLKLHTT----RS-----------------------WDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESF 153 (782)
Q Consensus 101 ~~~~~~~~~~----~s-----------------------~~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f 153 (782)
|+...++... .. ...++++.+ ++.++|....+|+||+|||||||||++||+|
T Consensus 94 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i-~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl 172 (671)
T d1r6va_ 94 PSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI-GVTQQLWEEASGTNIIVAVVDTGVDGTHPDL 172 (671)
T ss_dssp CCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT-TCCHHHHHHCSCTTCEEEEEESCCBTTSGGG
T ss_pred cceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhc-CccHHHHhcCCCCCCEEEEEcCCcCCCChhh
Confidence 9865543210 00 001233332 4555544567999999999999999999999
Q ss_pred CCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccc
Q 003970 154 QEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIA 233 (782)
Q Consensus 154 ~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~ 233 (782)
.+.. +..+.+..+.... ...++.|..||||||||||||+.+
T Consensus 173 ~~~~-----------------------------~~~~~~~~~~~~~----------~~~~~~d~~gHGT~VAGiiaa~~~ 213 (671)
T d1r6va_ 173 EGQV-----------------------------IAGYRPAFDEELP----------AGTDSSYGGSAGTHVAGTIAAKKD 213 (671)
T ss_dssp TTTB-----------------------------CCEEEGGGTEEEC----------TTCBCCTTCSHHHHHHHHHHCCCS
T ss_pred cCCc-----------------------------ccCccccccCCCC----------CCCcCcccCCCCccccceeeeecc
Confidence 7432 1111111111000 123456788999999999999752
Q ss_pred cCCcccccCCcceeeecCCCeEEEEEeeeCCC---CCCCCCHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHH
Q 003970 234 KNAGFFGLGRGIARGGAPRARLAVYKICWGKD---SDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADI 310 (782)
Q Consensus 234 ~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~---~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~ 310 (782)
+..+.||||+|+|+++|++++.. ..+....+.+++||+||+++|++|||||||+.. ....+..
T Consensus 214 ---------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-----~~~~~~~ 279 (671)
T d1r6va_ 214 ---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-----YSYTMKE 279 (671)
T ss_dssp ---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-----CCHHHHH
T ss_pred ---------ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc-----CChHHHH
Confidence 12358999999999999986421 011467788999999999999999999999874 3456677
Q ss_pred HHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEcccccc
Q 003970 311 GSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFA 389 (782)
Q Consensus 311 a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~ 389 (782)
++..|.++|+++|+||||++... ...+...|++|+|||++.+.
T Consensus 280 ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------------ 323 (671)
T d1r6va_ 280 AFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------------ 323 (671)
T ss_dssp HHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------------------
T ss_pred HHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------------------------------------
Confidence 88889999999999999998654 34455679999999954211
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhc
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQ 469 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 469 (782)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCC-----CCCCCccceee
Q 003970 470 FPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLL-----PSDGRSVKWNF 544 (782)
Q Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~y~~ 544 (782)
....+++||+|||. |||+|||++|+++++........ ........|..
T Consensus 324 -------------------~~~~~a~fS~~g~~--------~dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~ 376 (671)
T d1r6va_ 324 -------------------GTFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376 (671)
T ss_dssp -------------------TEEEECSSSCCCTT--------EEEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEE
T ss_pred -------------------CcceeeeccCCCCC--------ceEEecCCCeEeecCCCCccccccccccccccCCCeeee
Confidence 01246899999997 69999999999998864332211 12223458999
Q ss_pred eccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCCcee
Q 003970 545 QSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLI 622 (782)
Q Consensus 545 ~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv 622 (782)
++|||||||||||++|||+|++|+|++.|||++|++||++++..+ .+..||||+||+.+|++..+.
T Consensus 377 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp EESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTTTBTCBCCHHHHHHCCCC
T ss_pred ecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCCCcccChhCHHHHhhCcCC
Confidence 999999999999999999999999999999999999999765432 456899999999999985443
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.4e-48 Score=438.11 Aligned_cols=377 Identities=22% Similarity=0.236 Sum_probs=250.3
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
|+... +++.+|. .+|+||+|||||||||++||+|++.. +..+++..
T Consensus 7 g~~~i-~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~~-----------------------------~~~~~~~~-- 52 (435)
T d1v6ca_ 7 GQTFV-GATVLSD--SQAGNRTICIIDSGYDRSHNDLNANN-----------------------------VTGTNNSG-- 52 (435)
T ss_dssp HHHHT-TGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTSE-----------------------------EEECCCTT--
T ss_pred cHhhc-Ccchhhh--cCCCCcEEEEEcCCCCCCChhhccCe-----------------------------eeeeccCC--
Confidence 44443 6667776 47999999999999999999997432 11111111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecC--CCeEEEEEeeeCCCCCCCCCHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAP--RARLAVYKICWGKDSDGKCTEAD 274 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP--~A~l~~~kv~~~~~~~~~~~~~~ 274 (782)
..+...+.|++||||||||||||+..+ ..+.|||| +++|+.+|++.... .+...+
T Consensus 53 -----------~~~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~---~~~~~~ 109 (435)
T d1v6ca_ 53 -----------TGNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG---WGYSSS 109 (435)
T ss_dssp -----------SCCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE---ECCSSC
T ss_pred -----------CCCCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccc---cchhhh
Confidence 012346778999999999999997522 23589999 89999999998765 467778
Q ss_pred HHHHHHHHhh-cCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCc
Q 003970 275 ILAAFDDALH-DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDR 353 (782)
Q Consensus 275 i~~ai~~a~~-~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~ 353 (782)
+++||+++++ .+++|||+|||... ....+..++..+.++|+++|+||||+|+...+.+..++++|+|||++.+.
T Consensus 110 ~~~a~~~a~~~~~~~vin~S~g~~~-----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~ 184 (435)
T d1v6ca_ 110 LVAAIDTCVNSGGANVVTMSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNL 184 (435)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTC
T ss_pred hhhHHHHHhhcccceEEecccCCCC-----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCC
Confidence 9999999986 59999999999874 23455667778889999999999999988877778889999999987765
Q ss_pred ccceeEEeCCccEE--Eeeee---------------------ecccc-e-eeEEEccccc-----------cCCccc--c
Q 003970 354 TFPTEIVVNSDFSI--VGESF---------------------ISTEV-K-AKLVEAFTYF-----------ADGICK--C 395 (782)
Q Consensus 354 ~~~~~~~~~~~~~~--~g~~~---------------------~~~~~-~-~~lv~~~~~~-----------~~~~c~--~ 395 (782)
........+....+ .|..+ ..... . ..+....... ....|. .
T Consensus 185 ~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (435)
T d1v6ca_ 185 DHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNG 264 (435)
T ss_dssp CBCTTSCCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEET
T ss_pred CcccccCCCCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCC
Confidence 43221111111110 00000 00000 0 0000000000 000111 1
Q ss_pred CCCCCCCCCceEEEEeeCCCC---ccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCC
Q 003970 396 ENWMGRKATGRVVLCFSTMGS---VKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPR 472 (782)
Q Consensus 396 ~~~~~~~~~gkiv~~~~g~~~---~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 472 (782)
..+...++.+++.++.+.... .....+.......++.+++.+++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 312 (435)
T d1v6ca_ 265 TSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNS-------------------------------- 312 (435)
T ss_dssp TEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCS--------------------------------
T ss_pred ceeeccccccccceeeccCCccccceeeeeceeecccCCcceEEeccC--------------------------------
Confidence 122345667788887775543 345566666666666666555432
Q ss_pred CcEEEEccCccccCCCCCCccccccCCCCCCC--CCCCcccceeecCceEEeecCCCC----CCCCCCCCCCccceeeec
Q 003970 473 LPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI--SPDILKPDITAPGIGVLAAWPPNT----PPTLLPSDGRSVKWNFQS 546 (782)
Q Consensus 473 ~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~--~~~~~KPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~s 546 (782)
.+|... .....||||.+||..|.++..... .............|..||
T Consensus 313 --------------------------~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~s 366 (435)
T d1v6ca_ 313 --------------------------ALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYN 366 (435)
T ss_dssp --------------------------SSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEEC
T ss_pred --------------------------CCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEc
Confidence 222211 124568999999998875532100 000000011234799999
Q ss_pred cccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCCCceeecCC
Q 003970 547 GTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLK 626 (782)
Q Consensus 547 GTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~ 626 (782)
|||||||||||++|||+|+||+|+++|||++||+||+++.. ++++++||+|+||+.+|+
T Consensus 367 GTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~------------~~~~~~~G~G~vn~~~A~--------- 425 (435)
T d1v6ca_ 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV------------AGRDNQTGYGMINAVAAK--------- 425 (435)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS------------SSCBTTTBTCBCCHHHHH---------
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC------------CCCCCCcccceecHHHHH---------
Confidence 99999999999999999999999999999999999997643 346779999999999995
Q ss_pred chhhHhhhhc
Q 003970 627 PTDYIVFLRN 636 (782)
Q Consensus 627 ~~~~~~~~~~ 636 (782)
+||...|+
T Consensus 426 --~~l~~~~~ 433 (435)
T d1v6ca_ 426 --AYLDESCT 433 (435)
T ss_dssp --HHHHHCTT
T ss_pred --HHHHhcCC
Confidence 46776664
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=8.7e-48 Score=405.83 Aligned_cols=266 Identities=26% Similarity=0.295 Sum_probs=214.2
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
+++.+ +++.+|+++.+|+||+|||||||||++||+|.++ ++..+.|..
T Consensus 14 ~l~~i-~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------------~~~~~~~~~-- 61 (280)
T d1dbia_ 14 GPQNT-YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYDFVD-- 61 (280)
T ss_dssp TTGGG-THHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEETTT--
T ss_pred ChhhC-CHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC-----------------------------eeecccccC--
Confidence 55444 7889999999999999999999999999999632 222233322
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
....+.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+ .+...+++
T Consensus 62 -------------~~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~ 117 (280)
T d1dbia_ 62 -------------NDYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNG---SGTLSDIA 117 (280)
T ss_dssp -------------TBSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTS---CCCHHHHH
T ss_pred -------------CCCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCC---CcCHHHHH
Confidence 1235678899999999999987532 23468999999999999998776 58899999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccc
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~ 356 (782)
+||+|++++|++|||+|||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 118 ~ai~~a~~~g~~iin~S~g~~~-----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~----- 187 (280)
T d1dbia_ 118 DAIIYAADSGAEVINLSLGCDC-----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----- 187 (280)
T ss_dssp HHHHHHHHTTCSEEEECCSSCC-----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----
T ss_pred HHHHHHHHcCCcEeeccccccc-----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-----
Confidence 9999999999999999999874 234455667788899999999999999766666667899999998431
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
.+.++.||++||. +|++||
T Consensus 188 -----------------------------------------------------~~~~a~~S~~g~~--------~d~~ap 206 (280)
T d1dbia_ 188 -----------------------------------------------------YDRLASFSNYGTW--------VDVVAP 206 (280)
T ss_dssp -----------------------------------------------------TSCBCTTBCCSTT--------CCEEEE
T ss_pred -----------------------------------------------------CCCcCCcCCCCCc--------ccccCC
Confidence 3457899999987 599999
Q ss_pred CceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 003970 517 GIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596 (782)
Q Consensus 517 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~ 596 (782)
|.+|++..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 207 g~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~--------- 262 (280)
T d1dbia_ 207 GVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG--------- 262 (280)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT---------
T ss_pred ccceeccccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC---------
Confidence 99999998775 8999999999999999999999995 55899999999999987542
Q ss_pred CCCcCCCCCccccccCccccCC
Q 003970 597 SMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 597 ~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
++..||+|+||+.+||+
T Consensus 263 -----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcCCCCeEcHHHHcC
Confidence 34579999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=5.5e-48 Score=406.46 Aligned_cols=264 Identities=32% Similarity=0.396 Sum_probs=216.6
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
||+.. +++.+|.++++|+||+|||||||||++||+|+.. +.+.|..+
T Consensus 7 gl~~i-~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~-------------------------------~~~~~~~~- 53 (274)
T d1r0re_ 7 GIPLI-KADKVQAQGFKGANVKVAVLDTGIQASHPDLNVV-------------------------------GGASFVAG- 53 (274)
T ss_dssp HHHHT-THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-------------------------------EEEECSTT-
T ss_pred chhhc-ChHHHHHcCCCCCCeEEEEECCCCCCCChhhccc-------------------------------CCccccCC-
Confidence 44443 6778999999999999999999999999999521 12222221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+|+++..+ .+..++++
T Consensus 54 --------------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~---~~~~~~i~ 107 (274)
T d1r0re_ 54 --------------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSG---SGSYSGIV 107 (274)
T ss_dssp --------------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTS---EECHHHHH
T ss_pred --------------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCC---CcCHHHHH
Confidence 124567889999999999987532 2357999999999999998776 57889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC----CcccCCCceEEecccccC
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS----LVQNVAPWSICVAASSID 352 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVgAs~~d 352 (782)
++++++.+++++|+|+|||... ..........++.++++++|+||||+|.... ..+...+++|+|||.+.
T Consensus 108 ~ai~~a~~~~~~i~n~S~~~~~-----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~- 181 (274)
T d1r0re_ 108 SGIEWATTNGMDVINMSLGGAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS- 181 (274)
T ss_dssp HHHHHHHHTTCSEEEECEEBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-
T ss_pred HHHHHHHhcCCceecccccccc-----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC-
Confidence 9999999999999999999874 2234455667788999999999999986532 22334688999998542
Q ss_pred cccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCce
Q 003970 353 RTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANAS 432 (782)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~ 432 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccc
Q 003970 433 GLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPD 512 (782)
Q Consensus 433 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 512 (782)
.+.++.||++||. ||
T Consensus 182 ---------------------------------------------------------~~~~~~~s~~g~~--------~d 196 (274)
T d1r0re_ 182 ---------------------------------------------------------NSNRASFSSVGAE--------LE 196 (274)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTT--------EE
T ss_pred ---------------------------------------------------------CCCcccccCCCCC--------EE
Confidence 3456899999985 79
Q ss_pred eeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcc
Q 003970 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSI 592 (782)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~ 592 (782)
|+|||++|+++.+.+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 197 i~APG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------ 257 (274)
T d1r0re_ 197 VMAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------ 257 (274)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------
T ss_pred EEecCCCcccccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC------
Confidence 999999999998876 8999999999999999999999999999999999999999998653
Q ss_pred ccCCCCCcCCCCCccccccCccccCC
Q 003970 593 LAGGSMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
++..||+|+||+.+|+|
T Consensus 258 ---------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCceEcCeecHHHhcC
Confidence 34579999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=3.9e-47 Score=400.97 Aligned_cols=265 Identities=26% Similarity=0.315 Sum_probs=221.8
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
+++.+ +++++|+.+ +|+||+|+|||||||++||+|.+. ++..+.|.++
T Consensus 14 ~l~~i-~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~-----------------------------~~~~~~~~~~- 61 (279)
T d1thma_ 14 GPQKI-QAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFVDN- 61 (279)
T ss_dssp HHHHT-THHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETTTT-
T ss_pred ChhhC-CHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC-----------------------------eecccccccc-
Confidence 55544 788899987 999999999999999999999632 3333444321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
...+.|..+|||||||+|++...+ ...+.||||+|+|+.+|++...+ .+...+++
T Consensus 62 --------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~ 116 (279)
T d1thma_ 62 --------------DSTPQNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSG---SGTWTAVA 116 (279)
T ss_dssp --------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTS---CCCHHHHH
T ss_pred --------------CcccccccccccccceeeeeccCC--------CccccccCCcceEEEEEEEecCC---CCcHHHHH
Confidence 235678899999999999998543 23468999999999999998776 58889999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccc
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~ 356 (782)
++|+++++.+++|+|+|||... .......+...+.++|+++|+|+||+|......+...+++|+|||++.
T Consensus 117 ~ai~~~~~~~~~i~n~S~G~~~-----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~----- 186 (279)
T d1thma_ 117 NGITYAADQGAKVISLSLGGTV-----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ----- 186 (279)
T ss_dssp HHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-----
T ss_pred HHHHHHhhcCCceeccccCccc-----cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-----
Confidence 9999999999999999999874 334556677788899999999999999877666677899999998542
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
.+.++.||++|++ +||+||
T Consensus 187 -----------------------------------------------------~~~~~~~S~~G~~--------~di~Ap 205 (279)
T d1thma_ 187 -----------------------------------------------------NDNKSSFSTYGSW--------VDVAAP 205 (279)
T ss_dssp -----------------------------------------------------TSCBCTTCCCCTT--------CCEEEE
T ss_pred -----------------------------------------------------CCCCccccCCCce--------EEEeee
Confidence 3457899999998 599999
Q ss_pred CceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 003970 517 GIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596 (782)
Q Consensus 517 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~ 596 (782)
|.+|+++.+.+ .|..++|||||||||||++|||+|.+| ++.+||++|++||+++..
T Consensus 206 g~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g--------- 261 (279)
T d1thma_ 206 GSSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG--------- 261 (279)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT---------
T ss_pred eeccccccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC---------
Confidence 99999999876 899999999999999999999999765 789999999999987532
Q ss_pred CCCcCCCCCccccccCccccCC
Q 003970 597 SMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 597 ~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
.+..||+|+||+.+||+
T Consensus 262 -----~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 262 -----TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----BTTTBSSEECCHHHHHH
T ss_pred -----CCCcceeeeEcHHHhhC
Confidence 34579999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.1e-47 Score=403.52 Aligned_cols=266 Identities=31% Similarity=0.386 Sum_probs=217.4
Q ss_pred cccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccc
Q 003970 117 GLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGF 196 (782)
Q Consensus 117 gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~ 196 (782)
+|+.+ +++.+|.++++|+||+|+|||||||++||+|+... .+++...
T Consensus 7 ~l~~i-~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~~-------------------------------~~~~~~~- 53 (281)
T d1to2e_ 7 GVSQI-KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG-------------------------------GASMVPS- 53 (281)
T ss_dssp HHHHT-THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEE-------------------------------EEECCTT-
T ss_pred ChHHh-CcHHHHHCCCCCCCeEEEEECCCCCCCChhhhhcC-------------------------------CccccCC-
Confidence 44444 78889999999999999999999999999996321 1111110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHH
Q 003970 197 EEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADIL 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~ 276 (782)
+.....+..+|||||||||+|.... ....||||+|+|+.+|++..++ ....++++
T Consensus 54 -------------~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~---~~~~~~~~ 108 (281)
T d1to2e_ 54 -------------ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADG---SGQYSWII 108 (281)
T ss_dssp -------------CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTS---EECHHHHH
T ss_pred -------------CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCC---CcCHHHHH
Confidence 1112234679999999999987421 2357999999999999998766 47788999
Q ss_pred HHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC----cccCCCceEEecccccC
Q 003970 277 AAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL----VQNVAPWSICVAASSID 352 (782)
Q Consensus 277 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAs~~d 352 (782)
+||+|+++.+++|+|+|||... ....+..++..+.++|+++|+||||+|..... .+...+++|+||+.+.
T Consensus 109 ~ai~~a~~~~~~v~n~S~g~~~-----~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~- 182 (281)
T d1to2e_ 109 NGIEWAIANNMDVINMSLGGPS-----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS- 182 (281)
T ss_dssp HHHHHHHHTTCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-
T ss_pred HHHHHHHhccccccccccCCCc-----chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC-
Confidence 9999999999999999999874 34567777888899999999999999865322 2344689999998542
Q ss_pred cccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCce
Q 003970 353 RTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANAS 432 (782)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~ 432 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccc
Q 003970 433 GLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPD 512 (782)
Q Consensus 433 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 512 (782)
.+.++.||++||. +|
T Consensus 183 ---------------------------------------------------------~~~~~~~S~~G~~--------~d 197 (281)
T d1to2e_ 183 ---------------------------------------------------------SNQRASFSSVGPE--------LD 197 (281)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTT--------CC
T ss_pred ---------------------------------------------------------CCCCCcccCCCCC--------cc
Confidence 3456899999997 49
Q ss_pred eeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcc
Q 003970 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSI 592 (782)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~ 592 (782)
++|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 198 ~~apG~~i~s~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------ 258 (281)
T d1to2e_ 198 VMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------ 258 (281)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------
T ss_pred ccCCCCCceeecCCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC------
Confidence 999999999998875 8999999999999999999999999999999999999999998753
Q ss_pred ccCCCCCcCCCCCccccccCccccCCC
Q 003970 593 LAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
++..||+|+||+.+|++.
T Consensus 259 ---------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccCcccHHHHHhh
Confidence 234799999999999984
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=3.2e-47 Score=399.47 Aligned_cols=258 Identities=28% Similarity=0.354 Sum_probs=216.8
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
+++.+|..+++|+||+|+||||||+ +||+|.... ...|..
T Consensus 12 ~~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~~-------------------------------~~~~~~-------- 51 (269)
T d1gcia_ 12 QAPAAHNRGLTGSGVKVAVLDTGIS-THPDLNIRG-------------------------------GASFVP-------- 51 (269)
T ss_dssp THHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEEE-------------------------------EEECST--------
T ss_pred CcHHHHhCCCCCCCeEEEEECCCCC-CCcccCccc-------------------------------cccccC--------
Confidence 6788999999999999999999998 899995221 112211
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
....+.|.++|||||||||++... .....|+||+|+|+.+|++...+ ......+.++++++
T Consensus 52 -------~~~~~~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~ 112 (269)
T d1gcia_ 52 -------GEPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG---SGSVSSIAQGLEWA 112 (269)
T ss_dssp -------TCCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHH
T ss_pred -------CCCCccccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCC---CccHHHHHHHHHHH
Confidence 113456788999999999998753 23357999999999999998776 57888999999999
Q ss_pred hhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeC
Q 003970 283 LHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVN 362 (782)
Q Consensus 283 ~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~ 362 (782)
..+++++||+|||... .......+...+.++|+++|+||||+|......+...|++|+||+++.
T Consensus 113 ~~~~~~~in~s~g~~~-----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------- 176 (269)
T d1gcia_ 113 GNNGMHVANLSLGSPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ----------- 176 (269)
T ss_dssp HHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----------
T ss_pred Hhcccccccccccccc-----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc-----------
Confidence 9999999999999874 223455667788999999999999999776666677899999998542
Q ss_pred CccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc
Q 003970 363 SDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE 442 (782)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 442 (782)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEe
Q 003970 443 LIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLA 522 (782)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 522 (782)
.+.++.||++||. |||+|||.++.+
T Consensus 177 -----------------------------------------------~~~~~~~S~~G~~--------~di~Apg~~~~~ 201 (269)
T d1gcia_ 177 -----------------------------------------------NNNRASFSQYGAG--------LDIVAPGVNVQS 201 (269)
T ss_dssp -----------------------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEE
T ss_pred -----------------------------------------------CCCcccccCCCCC--------ceEEEeeeccee
Confidence 3456899999987 699999999999
Q ss_pred ecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCC
Q 003970 523 AWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSD 602 (782)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 602 (782)
+.+.. .|..++|||||||+|||++|||+|++|+|++++||++|++||.++. +
T Consensus 202 ~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g---------------~ 253 (269)
T d1gcia_ 202 TYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------S 253 (269)
T ss_dssp EETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------C
T ss_pred ccCCC-------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------------C
Confidence 98875 8999999999999999999999999999999999999999998753 2
Q ss_pred CCCccccccCccccCC
Q 003970 603 PFDIGAGHINPMKAMD 618 (782)
Q Consensus 603 ~~~~G~G~vn~~~Al~ 618 (782)
+..||+|+||+++|++
T Consensus 254 ~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 254 TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHTTCBCCHHHHTC
T ss_pred CCCcccCeEcHHHhcC
Confidence 3469999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=9.6e-43 Score=372.48 Aligned_cols=295 Identities=27% Similarity=0.303 Sum_probs=220.3
Q ss_pred ccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccc
Q 003970 116 MGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKG 195 (782)
Q Consensus 116 ~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~ 195 (782)
+||..+ +++.+|..+++|+||+|+|||||||++||+|.+. +...+.|...
T Consensus 8 wgl~~i-~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------------~~~~~~~~~~ 57 (309)
T d2ixta1 8 WGIKAI-YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGA 57 (309)
T ss_dssp HHHHHH-HTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSS
T ss_pred hhHhhc-CChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-----------------------------ccccccccCC
Confidence 355554 7889999999999999999999999999999643 2233333322
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHH
Q 003970 196 FEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADI 275 (782)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i 275 (782)
... ......|..+|||||||||+|...++ ...+.||||+|+|+.+|++...+ .+..+++
T Consensus 58 ~~~-----------~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~---~~~~~~~ 116 (309)
T d2ixta1 58 TTP-----------INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSG---SGYSDDI 116 (309)
T ss_dssp SSC-----------EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTS---CCCHHHH
T ss_pred CCC-----------CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCC---Ccccccc
Confidence 110 12345678899999999999875332 23458999999999999988776 5788999
Q ss_pred HHHHHHHhhcC-----CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccC--CCceEEecc
Q 003970 276 LAAFDDALHDG-----VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNV--APWSICVAA 348 (782)
Q Consensus 276 ~~ai~~a~~~g-----vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~--ap~vitVgA 348 (782)
+.+++++++.+ ..|+|+||+... .......+...+.++|+++|+||||++........+ .+++++|++
T Consensus 117 ~~~~~~a~~~~~~~~~~~v~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~ 191 (309)
T d2ixta1 117 AAAIRHAADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191 (309)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEE
T ss_pred cccccccccccccccccccccccccccc-----cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccc
Confidence 99999998754 368999998773 334455666778899999999999999776554443 578888887
Q ss_pred cccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHH
Q 003970 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKK 428 (782)
Q Consensus 349 s~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~ 428 (782)
...........
T Consensus 192 ~~~~~~~~~~~--------------------------------------------------------------------- 202 (309)
T d2ixta1 192 LENVQQNGTYR--------------------------------------------------------------------- 202 (309)
T ss_dssp EEEEEETTEEE---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 43211000000
Q ss_pred cCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCC
Q 003970 429 ANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDI 508 (782)
Q Consensus 429 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 508 (782)
.........++++|+.. ...
T Consensus 203 ----------------------------------------------------------~~~~~~~~~~~~~~~~~--~~~ 222 (309)
T d2ixta1 203 ----------------------------------------------------------VADYSSRGYISTAGDYV--IQE 222 (309)
T ss_dssp ----------------------------------------------------------ECTTSCCCCTTTTTSSS--CCT
T ss_pred ----------------------------------------------------------ccccccccccccccccc--cCC
Confidence 00012334567777763 456
Q ss_pred cccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCC
Q 003970 509 LKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTS 588 (782)
Q Consensus 509 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~ 588 (782)
.||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..
T Consensus 223 ~~vdi~apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~ 289 (309)
T d2ixta1 223 GDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289 (309)
T ss_dssp TCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred CcceeecCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC
Confidence 7899999999999998875 899999999999999999999999999999999999999999987654
Q ss_pred CCccccCCCCCcCCCCCccccccCc
Q 003970 589 HDSILAGGSMKVSDPFDIGAGHINP 613 (782)
Q Consensus 589 g~~~~~~~~~~~~~~~~~G~G~vn~ 613 (782)
+.. .....+++.+|||++|+
T Consensus 290 ~~~-----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 290 GGY-----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp BST-----TCCSSSBTTTBTCBCCC
T ss_pred CCc-----CCccCCCcccCCCEecC
Confidence 321 12344677889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.1e-41 Score=359.13 Aligned_cols=238 Identities=28% Similarity=0.333 Sum_probs=192.6
Q ss_pred CCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCC
Q 003970 130 QLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNR 209 (782)
Q Consensus 130 ~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 209 (782)
...+|+||+|+|||||||++||+|.+.. .-.+.+
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~~-----------------------------~~~~~~----------------- 59 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGRA-----------------------------QMVKTY----------------- 59 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTCE-----------------------------EEEEES-----------------
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCCc-----------------------------eeccCC-----------------
Confidence 3458999999999999999999996432 101111
Q ss_pred CCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC---
Q 003970 210 EYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG--- 286 (782)
Q Consensus 210 ~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g--- 286 (782)
...+.|.+||||||||||+|+. .|+||+|+|+.+|++.... ....+.+..+++++....
T Consensus 60 -~~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~ 121 (279)
T d2pwaa1 60 -YYSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIAGMDFVASDKNNR 121 (279)
T ss_dssp -SSCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHHGGGS
T ss_pred -CCCcccccCccccccccccccc--------------cccCCCccccceeeecCCc---ccccccccchhheeccccccc
Confidence 1245578899999999999863 6999999999999998766 578889999999987753
Q ss_pred ----CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeEEe
Q 003970 287 ----VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEIVV 361 (782)
Q Consensus 287 ----vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~~~ 361 (782)
++|+|+|||... .+.+..++.++.++|+++|+||||++..... .+...|++|+|||++.
T Consensus 122 ~~~~~~i~n~s~g~~~------~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---------- 185 (279)
T d2pwaa1 122 NCPKGVVASLSLGGGY------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------- 185 (279)
T ss_dssp CCTTEEEEEECCCEEC------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred ccccccceeccCCCcc------ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee----------
Confidence 459999999763 3566777788899999999999999865433 3345789999998541
Q ss_pred CCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 362 NSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEE
Q 003970 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVL 521 (782)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 521 (782)
.+.++.||++||. |||+|||.+|+
T Consensus 186 ------------------------------------------------~g~~~~~S~~G~~--------~dv~APG~~i~ 209 (279)
T d2pwaa1 186 ------------------------------------------------YDRRSSFSNYGSV--------LDIFGPGTDIL 209 (279)
T ss_dssp ------------------------------------------------TSBBCTTCCBSTT--------CCEEEECSSEE
T ss_pred ------------------------------------------------cCCCccccCCCCc--------ccccccccccc
Confidence 3457899999997 59999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcC
Q 003970 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS 601 (782)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 601 (782)
++++.+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++.
T Consensus 210 s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~---------------- 259 (279)
T d2pwaa1 210 STWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG---------------- 259 (279)
T ss_dssp EEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES----------------
T ss_pred ccccCC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC----------------
Confidence 999876 899999999999999999999999999999888775 67788753
Q ss_pred CCCCccccccCc
Q 003970 602 DPFDIGAGHINP 613 (782)
Q Consensus 602 ~~~~~G~G~vn~ 613 (782)
.....|+|++|.
T Consensus 260 ~~~~~g~g~~n~ 271 (279)
T d2pwaa1 260 DLSNIPFGTVNL 271 (279)
T ss_dssp CCBSCCTTSCCE
T ss_pred CCCCCCCCChhh
Confidence 233689999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.2e-40 Score=357.60 Aligned_cols=301 Identities=24% Similarity=0.323 Sum_probs=220.6
Q ss_pred CCCccCCC-CCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 123 TGEVTPVQ-LAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 123 ~~~~~~~~-~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++.+|.. |++|+||+|||||||||++||+|.... .| +.++...+.+..
T Consensus 9 ~~~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~-------~~----------------~~~~~~~~~~~~------- 58 (318)
T d1wmda2 9 KADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE-------AF----------------RGKITALYALGR------- 58 (318)
T ss_dssp THHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT-------TT----------------TTCEEEEEETTT-------
T ss_pred CchhHHHccCccccCeEEEEEcCCcCCCCcccccCc-------cc----------------CCcEEeecCCCC-------
Confidence 45567775 999999999999999999999997542 01 123333332211
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
..++.|..||||||||||+|+.. ...||||+|+|+.+|++...+.. ......+..++++
T Consensus 59 ---------~~~~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~-~~~~~~~~~~~~~ 117 (318)
T d1wmda2 59 ---------TNNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFSQ 117 (318)
T ss_dssp ---------TTCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHHH
T ss_pred ---------CCCCCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccc-cccchhhHHHHHH
Confidence 23456789999999999998742 24799999999999999876522 2445567889999
Q ss_pred HhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccC--CCceEEecccccCcccceeE
Q 003970 282 ALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNV--APWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 282 a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~--ap~vitVgAs~~d~~~~~~~ 359 (782)
+...+++|+|+|||... ..........+...+.++++++|+|+||.|.....+..+ .+.++++.+.........
T Consensus 118 ~~~~~~~i~~~S~g~~~--~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 193 (318)
T d1wmda2 118 AYSAGARIHTNSWGAAV--NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG-- 193 (318)
T ss_dssp HHHTTCSEEEECCCBCC--TTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC--
T ss_pred HHhcCCceeeccccccc--ccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc--
Confidence 99999999999999875 333344455556667799999999999999776655443 567777776432110000
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
........+..+|++||.. ....|||+.|||.+
T Consensus 194 ---------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~ 226 (318)
T d1wmda2 194 ---------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTF 226 (318)
T ss_dssp ---------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSS
T ss_pred ---------------------------------------------cccccccccccccccCCCc--CCCcccceeecCce
Confidence 0011134567899999985 57789999999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC-----CCCCHHHHHHHHHhccccCCCCCCcccc
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH-----PNWSPAAIRSALMTTAYTRDTSHDSILA 594 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P~lsp~~Ik~~L~~TA~~~~~~g~~~~~ 594 (782)
|+++.+........ .......|..++|||||||||||++|||+|++ +.|++.+||++|++||+++..
T Consensus 227 i~~~~~~~~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~------- 298 (318)
T d1wmda2 227 ILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL------- 298 (318)
T ss_dssp EEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------
T ss_pred EEeccccccccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-------
Confidence 99988764322111 11122468889999999999999999999975 468999999999999997543
Q ss_pred CCCCCcCCCCCccccccCccccCC
Q 003970 595 GGSMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 595 ~~~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
..++..||||+||+.+||+
T Consensus 299 -----~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 -----GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -----CSSCTTTTTCBCCHHHHHT
T ss_pred -----CCCCCCeeeceecHHHHhC
Confidence 2356689999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.5e-38 Score=340.42 Aligned_cols=288 Identities=19% Similarity=0.178 Sum_probs=194.0
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
++++.+|..+.+|+||+|||||||||++||+|.+.. . .+.+|. +.+.. .
T Consensus 24 in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~---------~----~~~~~~--------------~~~~~-~--- 72 (334)
T d1p8ja2 24 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY---------D----PGASFD--------------VNDQD-P--- 72 (334)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB---------C----GGGCEE--------------TTTTB-S---
T ss_pred CCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc---------c----cCCCcc--------------ccCCC-C---
Confidence 367889999999999999999999999999997532 0 000110 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
.........|..+|||||||||+|...++. ...|+||+++++.+|++.. ...+.+.++.+
T Consensus 73 -----~~~~~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~-------~~~~~~~~~~~ 132 (334)
T d1p8ja2 73 -----DPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG-------EVTDAVEARSL 132 (334)
T ss_dssp -----CCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS-------CCCHHHHHHHH
T ss_pred -----ccccccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc-------cccchHHHHHH
Confidence 001123455789999999999999864332 2479999999999999753 33466677777
Q ss_pred Hhh-cCCcEEEecccCCCCCCCCccC--------hHHHHHHhhhccCceEEEecCCCCCCCCCccc----CCCceEEecc
Q 003970 282 ALH-DGVDVISASFGESPPLRPFFAS--------NADIGSFNAMQHGVTVVFSGGNDGPEPSLVQN----VAPWSICVAA 348 (782)
Q Consensus 282 a~~-~gvdVIn~SlG~~~~~~~~~~~--------~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVgA 348 (782)
+++ ++++++|+|||.... ...... ....+...+..+|+++|+||||++........ ..+.+++|++
T Consensus 133 ~~~~~~~~~~n~S~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~ 211 (334)
T d1p8ja2 133 GLNPNHIHIYSASWGPEDD-GKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISS 211 (334)
T ss_dssp TSCTTTCCEEEECCBSCCS-SSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEE
T ss_pred HhhhcCCcEEeCCCCCCCc-CcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccc
Confidence 775 689999999998642 111111 12223334567999999999998754432222 1345666665
Q ss_pred cccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHH
Q 003970 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKK 428 (782)
Q Consensus 349 s~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~ 428 (782)
.+.
T Consensus 212 ~~~----------------------------------------------------------------------------- 214 (334)
T d1p8ja2 212 ATQ----------------------------------------------------------------------------- 214 (334)
T ss_dssp ECT-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 332
Q ss_pred cCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCC
Q 003970 429 ANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDI 508 (782)
Q Consensus 429 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 508 (782)
.+..+.||++|+...
T Consensus 215 -------------------------------------------------------------~g~~~~~s~~~~~~~---- 229 (334)
T d1p8ja2 215 -------------------------------------------------------------FGNVPWYSEACSSTL---- 229 (334)
T ss_dssp -------------------------------------------------------------TSCCCTTCCBCTTCC----
T ss_pred -------------------------------------------------------------CCceeeecccCCccc----
Confidence 233455666665531
Q ss_pred cccceeecCc-----eEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 509 LKPDITAPGI-----GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 509 ~KPDI~APG~-----~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.+..+||. .+.+.... ..|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~ 294 (334)
T d1p8ja2 230 --ATTYSSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSK 294 (334)
T ss_dssp --EEEECCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred --cccccccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCc
Confidence 23344432 23333332 27889999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccCCCCCcCCCCCccccccCccccCCC
Q 003970 584 TRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 584 ~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
+.......+.. .......+..||+|+||+.+||+.
T Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 295 PAHLNADDWAT-NGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp CTTCCCSCCEE-CTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred ccCCCCccccc-cCCCcccCCCCcceEeCHHHHHHH
Confidence 87654433322 112223445799999999999973
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-38 Score=343.25 Aligned_cols=291 Identities=19% Similarity=0.147 Sum_probs=205.0
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++..+|..+++|+||+|+|||||||++||+|++.. +.. +.+.|.+..
T Consensus 33 in~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~--------~~~-------------------~~~~~~~~~----- 80 (339)
T d2id4a2 33 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF--------CAE-------------------GSWDFNDNT----- 80 (339)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB--------CGG-------------------GCEETTTTB-----
T ss_pred cCHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCc--------ccc-------------------cccccccCC-----
Confidence 467889999999999999999999999999997542 000 111222111
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
.......+..+||||||++|+|....+. .+.||||+|+|+.+++... .....++..++.+
T Consensus 81 -------~~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~-----~~~~~~~~~~~~~ 140 (339)
T d2id4a2 81 -------NLPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSG-----DITTEDEAASLIY 140 (339)
T ss_dssp -------SCCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTS-----CCCHHHHHHHTTT
T ss_pred -------CccCCCcccccccceeeecccccccccc--------cccccccccccceEEEeec-----cccchHHHHHHHH
Confidence 0112445678999999999998754322 3579999999999999753 3677788888888
Q ss_pred HhhcCCcEEEecccCCCCCCCC--cc----Ch-HHHHHHhhhccCceEEEecCCCCCCCCCccc----CCCceEEecccc
Q 003970 282 ALHDGVDVISASFGESPPLRPF--FA----SN-ADIGSFNAMQHGVTVVFSGGNDGPEPSLVQN----VAPWSICVAASS 350 (782)
Q Consensus 282 a~~~gvdVIn~SlG~~~~~~~~--~~----~~-~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVgAs~ 350 (782)
+++. .+|+|+|||........ .. .. ...+...+..+|+++|+||||++........ ..+.+++|++++
T Consensus 141 ~~~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (339)
T d2id4a2 141 GLDV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID 219 (339)
T ss_dssp TTTT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC
T ss_pred HHhh-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc
Confidence 7765 48999999976320111 01 11 1223344557999999999998754332221 134455555432
Q ss_pred cCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcC
Q 003970 351 IDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKAN 430 (782)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~G 430 (782)
.
T Consensus 220 ~------------------------------------------------------------------------------- 220 (339)
T d2id4a2 220 H------------------------------------------------------------------------------- 220 (339)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcc
Q 003970 431 ASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILK 510 (782)
Q Consensus 431 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 510 (782)
.+..+.||++|+. ....
T Consensus 221 -----------------------------------------------------------~g~~~~~s~~~~~----~~~~ 237 (339)
T d2id4a2 221 -----------------------------------------------------------KDLHPPYSEGCSA----VMAV 237 (339)
T ss_dssp -----------------------------------------------------------TSCCCTTCCCCTT----EEEE
T ss_pred -----------------------------------------------------------cccccccccccCc----ccee
Confidence 2345677777765 3455
Q ss_pred cceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCC
Q 003970 511 PDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHD 590 (782)
Q Consensus 511 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~ 590 (782)
++..+||..|.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|++||.+++....
T Consensus 238 ~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~ 305 (339)
T d2id4a2 238 TYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNAD 305 (339)
T ss_dssp EECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGG
T ss_pred eeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCC
Confidence 78889999998877654 168899999999999999999999999999999999999999998765432
Q ss_pred ccccCCCCCcCCCCCccccccCccccCCC
Q 003970 591 SILAGGSMKVSDPFDIGAGHINPMKAMDP 619 (782)
Q Consensus 591 ~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (782)
............+..||||+||+.+||+.
T Consensus 306 ~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 306 GDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp GCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred ccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 11111222233456799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=6.4e-30 Score=277.47 Aligned_cols=316 Identities=15% Similarity=0.077 Sum_probs=182.5
Q ss_pred CCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCC
Q 003970 129 VQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTN 208 (782)
Q Consensus 129 ~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 208 (782)
.++++|+||+|||||||||++||+|.+.. +. |.. .
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~~---------~~-------~~~-~---------------------------- 52 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQYF---------AS-------LGV-S---------------------------- 52 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHHH---------HH-------TTC-C----------------------------
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHHH---------hh-------cCC-C----------------------------
Confidence 46899999999999999999999996321 00 000 0
Q ss_pred CCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh---hc
Q 003970 209 REYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL---HD 285 (782)
Q Consensus 209 ~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~---~~ 285 (782)
.....+.|.++|+||+++++++...... .....+.||||+|+|+.+|+... ...++.++++++ ++
T Consensus 53 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~--------~~~~~~~i~~~~~~~~~ 120 (357)
T d1t1ga_ 53 APQVVSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT--------DAGFLNAITTAVHDPTH 120 (357)
T ss_dssp CCCEEEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS--------HHHHHHHHHHHHHCTTT
T ss_pred CCCCceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC--------CCchHHHHHHHHHhhhc
Confidence 0001233567888888888765432110 11224689999999999999643 334455555554 46
Q ss_pred CCcEEEecccCCCCC-CCCccChHHHHHHhhhccCceEEEecCCCCCCCCC--------cccCCCceEEecccccCcccc
Q 003970 286 GVDVISASFGESPPL-RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL--------VQNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 286 gvdVIn~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgAs~~d~~~~ 356 (782)
+++|||+|||..... .......+......+..+|+++|+++||+|..... .....+++++|++........
T Consensus 121 ~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 200 (357)
T d1t1ga_ 121 KPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAG 200 (357)
T ss_dssp CCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSS
T ss_pred CCeEEecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCCC
Confidence 899999999986310 01112234455566778999999999999854322 122357788888754221100
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
....++...... .
T Consensus 201 ---------~~~~~~~~~~~~-----------------~----------------------------------------- 213 (357)
T d1t1ga_ 201 ---------RIERETVWNDGP-----------------D----------------------------------------- 213 (357)
T ss_dssp ---------CEEEEEECBCHH-----------------H-----------------------------------------
T ss_pred ---------ccccceeccccc-----------------c-----------------------------------------
Confidence 000000000000 0
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
. .......+... . ...........+++.+++. .++.|||+.++
T Consensus 214 ------------------------------~--~~~~~g~s~~~--~-~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~ 256 (357)
T d1t1ga_ 214 ------------------------------G--GSTGGGVSRIF--P-LPSWQERANVPPSANPGAG--SGRGVPDVAGN 256 (357)
T ss_dssp ------------------------------H--CBCCCEECSSS--C-CCGGGTTSCCCCCSSTTCC--CCCEECSEEEE
T ss_pred ------------------------------c--ccccCCccccc--c-cCcccccccccccccCCCC--CCceecceecc
Confidence 0 00000000000 0 0011134556777777773 68999999998
Q ss_pred Cce--EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC---CCHHHHHHHHHhccccCCCCCCc
Q 003970 517 GIG--VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN---WSPAAIRSALMTTAYTRDTSHDS 591 (782)
Q Consensus 517 G~~--I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---lsp~~Ik~~L~~TA~~~~~~g~~ 591 (782)
+.. +.+....+ .|..++|||||||||||++|||+|+++. +...+++.+...+.+++......
T Consensus 257 ~~~~~~~~~~~~~-------------~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~ 323 (357)
T d1t1ga_ 257 ADPATGYEVVIDG-------------ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNND 323 (357)
T ss_dssp CCTTEEEEEEETT-------------EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCC
T ss_pred cCCCCceEEecCC-------------ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCC
Confidence 654 34444443 8999999999999999999999999643 23344444333333322111000
Q ss_pred cccC---CCCCcCCCCCccccccCccccCC
Q 003970 592 ILAG---GSMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 592 ~~~~---~~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
.... -...+.++..+|||++|+.++++
T Consensus 324 ~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 324 IANRARIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp CSSSSCCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred CCCCCCcccCccCCCCCccCchhhHHHHHH
Confidence 0000 01234467789999999888765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.93 E-value=1.1e-27 Score=261.53 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=93.6
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc-CCcEEEecc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD-GVDVISASF 294 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-gvdVIn~Sl 294 (782)
+..+||||+++++.+... ...+.||||+|+|+.++++.+.+ ....++++++|+||+++ +++|||+||
T Consensus 66 ~~~~~~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~~Vis~S~ 133 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQS---ASGNTGLTQAFNQAVSDNVAKVINVSL 133 (369)
T ss_dssp TTSCCCBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTT---SSTTHHHHHHHHHHHHHCCCSEEEECC
T ss_pred CCCCCCCCCCcceeeccc---------cccccccccCceEEEEEEeCCCC---CcchHHHHHHHHHHHHcCCCceeeccc
Confidence 467899999999886531 22358999999999999998776 57788999999999965 799999999
Q ss_pred cCCCC--CCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-------------cccCCCceEEeccccc
Q 003970 295 GESPP--LRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-------------VQNVAPWSICVAASSI 351 (782)
Q Consensus 295 G~~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-------------~~~~ap~vitVgAs~~ 351 (782)
|.... ......+.+..++.+|..+|++||+||||+|..... .+...+++++|+++..
T Consensus 134 g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 134 GWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp CEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred cccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 98621 011223445567778889999999999999864321 1223589999998653
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=4e-08 Score=78.07 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=54.1
Q ss_pred CceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecceee
Q 003970 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQVLK 106 (782)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 106 (782)
+++|||.|++... ......+.+++++ ...++.+.|+ .||||+++|++++++.|+++|+|.+||+|+.++
T Consensus 1 e~~YIV~fK~~~~---~~~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~ 69 (71)
T d1scjb_ 1 EKKYIVGFKQTMS---AMSSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69 (71)
T ss_dssp CEEEEEEECSSSS---CCSHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred CCcEEEEECCCCC---hHHHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence 3689999998742 2223334444332 2346899998 799999999999999999999999999999876
Q ss_pred c
Q 003970 107 L 107 (782)
Q Consensus 107 ~ 107 (782)
.
T Consensus 70 a 70 (71)
T d1scjb_ 70 E 70 (71)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.43 E-value=3.9e-07 Score=72.46 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhhccceEEEee-eeeeeEEEEeCHHHHHHHhcCcC--eEEEEecc
Q 003970 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDAKRSLLYGYK-YSFSGFSAKLNSSQAASLAEMEE--VISIFESQ 103 (782)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~s~~l~~~~~~~L~~~p~--V~~V~~~~ 103 (782)
..+|||.||+.. +......+..++... ...+.+.|. +.|+||+++|+++.++.|+++|. |.+||+|+
T Consensus 2 aG~YIVvlK~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 2 AGKFIVIFKNDV---SEDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CEEEEEEECTTC---CHHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CccEEEEECCCC---CHHHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 368999999863 233334444444433 234677887 68999999999999999999665 99999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0015 Score=60.82 Aligned_cols=82 Identities=22% Similarity=0.188 Sum_probs=60.6
Q ss_pred eeEEEccccccCCccccCCCC--CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc--------------
Q 003970 379 AKLVEAFTYFADGICKCENWM--GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-------------- 442 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~--~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-------------- 442 (782)
.++||..- |...++. ..+++|||+|+++|.+. |.+|..+|++.||.|+|||.+...
T Consensus 41 g~lVy~n~------G~~~Df~~L~~~v~GkI~l~r~G~~~--~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~ 112 (193)
T d1de4c2 41 GKLVHANF------GTKKDFEDLYTPVNGSIVIVRAGKIT--FAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHA 112 (193)
T ss_dssp ECEEECST------TCHHHHHTCSSCCTTSEEEEESCSSC--HHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEEC
T ss_pred EEEEEccC------CCHHHHHHhccccCceEEEEeCCCCC--HHHHHHHHHHcCceEEEEecCccccCCcCccccccccc
Confidence 56666543 3332222 35799999999999876 999999999999999999986430
Q ss_pred --cccc---------------------cccccEEEEehhhHHHHHHHHh
Q 003970 443 --LIAE---------------------VDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 443 --~~~~---------------------~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
...+ --.||+.-|+..++..|+..+.
T Consensus 113 ~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 113 HLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0000 1247999999999999988766
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.72 E-value=0.086 Score=43.67 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=61.4
Q ss_pred CCcCeEEEeecCceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecc-cCCCceEEE
Q 003970 671 INYPSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLK-MSQGRFDFG 749 (782)
Q Consensus 671 ln~ps~~~~~~~~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~G 749 (782)
+..|++.+.- ....+++.+|+|.|......-++.++.|.|-+++ |....+ ++||+++++++++.+. ...+.|..
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i- 80 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRYRV- 80 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEEEE-
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceEEE-
Confidence 3446776643 3578999999999975223356778899997664 555555 7899999999999863 34455543
Q ss_pred EEEEEcCceEEEeEEEEEE
Q 003970 750 QIVWSDGFHYVRSPLVVFV 768 (782)
Q Consensus 750 ~~~~~~~~~~v~~P~~~~~ 768 (782)
.++.+.+.......+-+.+
T Consensus 81 ~~~a~~~~~~~s~t~tvtV 99 (103)
T d1w8oa1 81 GATLRTSAGNASTTFTVTV 99 (103)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeCCcceEEEEEEEE
Confidence 3555555444444444443
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.017 Score=55.20 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 400 GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 400 ~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
.-+++|||+|+++|.+. +.+|..+|+..||+|+|||++.
T Consensus 76 gi~~~gkIvl~ryG~~~--~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVF--RGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSC--HHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCc--hhHHHHHHHHcCceEEEEecCh
Confidence 45799999999999875 9999999999999999999985
|