Citrus Sinensis ID: 003975
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.498 | 0.390 | 0.234 | 2e-20 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.457 | 0.407 | 0.240 | 2e-16 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.484 | 0.431 | 0.242 | 2e-16 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.150 | 0.115 | 0.422 | 4e-14 | |
| O43581 | 403 | Synaptotagmin-7 OS=Homo s | no | no | 0.262 | 0.508 | 0.261 | 3e-11 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.326 | 0.448 | 0.269 | 1e-10 | |
| Q9R0N7 | 403 | Synaptotagmin-7 OS=Mus mu | no | no | 0.262 | 0.508 | 0.253 | 2e-10 | |
| Q9Y6V0 | 5065 | Protein piccolo OS=Homo s | no | no | 0.148 | 0.022 | 0.369 | 7e-10 | |
| O43374 | 803 | Ras GTPase-activating pro | no | no | 0.278 | 0.271 | 0.264 | 8e-10 | |
| C9J798 | 803 | Putative Ras GTPase-activ | no | no | 0.278 | 0.271 | 0.264 | 1e-09 |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 206/494 (41%), Gaps = 104/494 (21%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-TKHLEKNQNPVWNQIFAFSKER 97
M+ L + + + ++L D G+ DPYV+ K+G + +K + KN NPVW + +
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319
Query: 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKG 156
L+ L + V D D G +DDF+G LDL+Q+ L P D L L+D G
Sbjct: 320 LREPLY-IKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLT-----LKDPHYPDHDLG 373
Query: 157 EIMLAVWMGTQADES------FAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLR----- 205
I+L+V + + ES ++W + +S+ + + YFS K + R
Sbjct: 374 IILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGS----YFSVKSLFWRTCGRP 429
Query: 206 --------------------------------------------VFVFEAQDLVPSDKGR 221
+ + E +DL D
Sbjct: 430 ALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNG 489
Query: 222 APDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEI 281
D V+ +LG+Q + +++NP W E+ F E +I +T D+ +D+
Sbjct: 490 LSDPYVKFRLGHQ-KYKSKIMPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDF 548
Query: 282 LGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGY 341
+GR + + + R +T HK L EEG + +L++ A
Sbjct: 549 IGRCQVDLSAL-SREQT-----------HKLELQLEEG------EGHLVLLVTLTASATV 590
Query: 342 HVFDESTHFSSDLQTSSKSLRKGS----------IGTLELGILSAKNLMQMKSKDGKLTD 391
+ D S + D + + L++ S +G L++ ++ A+ LM GK +D
Sbjct: 591 SISDLSVNSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVT-GK-SD 648
Query: 392 AYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQ 451
+CV + N + T T+ L P WN+ +T+++ D +V+ + V+D +D + D
Sbjct: 649 PFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDE-----DRDRSAD- 702
Query: 452 RIGKVRIRLSTLET 465
+GKV I L +++
Sbjct: 703 FLGKVAIPLLSIQN 716
|
Homo sapiens (taxid: 9606) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 185/424 (43%), Gaps = 66/424 (15%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKE 96
+ L +++ + RNL V D G+ DPYV+ KL YK +K + KN NPVW++I +
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYK--SKVIYKNLNPVWDEIVVLPIQ 251
Query: 97 RLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKG 156
L L V V D+D+ DF+G + LS + L + L +LED + G
Sbjct: 252 SLDQK-LRVKVYDRDLTTSDFMGSAFVILSDLELNRTTEHIL-----KLEDPNSLEDDMG 305
Query: 157 EIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLY-----------YLR 205
I+L + + + + W ++K L+ ++S + + +L +
Sbjct: 306 VIVLNLNLVVKQGDFKRHRWS------NRKRLSASKSSLIRNLRLSESLKKNQLWNGIIS 359
Query: 206 VFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDL 265
+ + E +++ G + V+++LG+Q R + +S NP W E+ F +
Sbjct: 360 ITLLEGKNV---SGGSMTEMFVQLKLGDQ-RYKSKTLCKSANPQWQEQFDFHYFSDRMGI 415
Query: 266 IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKE 325
+ + V + +E LG + + +P + N + L + GA
Sbjct: 416 LDIEVWGKDNKKHEERLGTCKVDISALPLKQA----------NCLELPLDSCLGA----- 460
Query: 326 KFSSKILISFCLEAGYHVFDESTHFSSD------------LQTSSKSLRKGSIGTLELGI 373
+L++ AG V D +D LQ S K ++ +G L++ +
Sbjct: 461 ---LLMLVTLTPCAGVSVSDLCVCPLADLSERKQITQRYCLQNSLKDVK--DVGILQVKV 515
Query: 374 LSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITI 433
L A +L+ GK +D +C+ + GN ++T T+ L P WN+ +T+ + D V+ +
Sbjct: 516 LKAADLLAADFS-GK-SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEV 573
Query: 434 GVFD 437
VFD
Sbjct: 574 TVFD 577
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/449 (24%), Positives = 195/449 (43%), Gaps = 70/449 (15%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGITKHLEKNQNPVWNQIFAFSKERL 98
+ L +++ + RNL V D G+ DPYV+ KL G +K + KN NP+W++I + L
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSL 253
Query: 99 QSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEI 158
L V V D+D+ K DF+G + L + L + L +LED + G I
Sbjct: 254 DQK-LRVKVYDRDLTKSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGVI 307
Query: 159 MLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLY-----------YLRVF 207
+L + + + + W ++K L+ ++S + + +L + +
Sbjct: 308 VLNLNLVVKQGDFKRHRWS------NRKRLSASKSSLIRNLRLSESLRKNQLWNGIISIT 361
Query: 208 VFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLII 267
+ E +++ G + V+++LG Q R + +S NP W E+ F ++
Sbjct: 362 LLEGKNV---SGGNMTEMFVQLKLGEQ-RYKSKTLCKSANPQWQEQFDFHYFSDRMGILD 417
Query: 268 VTVEDRIRPGKDEILGRELIPVRNVPQRHETT-KLPDPRWFNLHKPSLSAEEGAEKNKEK 326
+ V + +E LG + + +P + + +LP L + +GA
Sbjct: 418 IEVWGKDSKKHEERLGTCKVDISALPLKQDNCLELP-----------LESCQGA------ 460
Query: 327 FSSKILISFCLEAGYHVFD----------ESTHFSS--DLQTSSKSLRKGSIGTLELGIL 374
+LI+ G + D E S Q S K ++ +G L++ +L
Sbjct: 461 --LLMLITLTPCTGVSISDLCVCPFEDPSERQQISQRYAFQNSLKDVK--DVGILQVKVL 516
Query: 375 SAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIG 434
A +L+ GK +D +C+ + GN ++T TI L P WN+ +T+ + D V+ +
Sbjct: 517 KASDLLAADFS-GK-SDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVT 574
Query: 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463
VFD D A D +GKV I L ++
Sbjct: 575 VFDE-----DGDKAPD-FLGKVAIPLLSI 597
|
Mus musculus (taxid: 10090) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L V VV+ARNLP MD++G DPYV ++LG + TK ++KN NP W + F+F + L
Sbjct: 3 LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62
Query: 102 LLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE-DKKGDQTTKGEIM 159
L+ V+V D+D DDFVG+V + +S V + L WY L KKG + GEI+
Sbjct: 63 LV-VSVLDEDKYFNDDFVGQVRVSVSLV--FDAENQSLGTVWYPLNPKKKGSKKDCGEIL 119
Query: 160 LAV 162
L +
Sbjct: 120 LKI 122
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 51/256 (19%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIF---AFSK 95
L V ++KA+ LP D SG+ DP+V++ L +K TK KN NP WN+ F F
Sbjct: 152 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 211
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTT 154
E++ +L + V D D ++D +G VS+ L++V L + + W L+ +
Sbjct: 212 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSDGSGS 266
Query: 155 KGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDL 214
+GE++L+ + ++P + V + +A++L
Sbjct: 267 RGELLLS---------------------------------LCYNPSANSIIVNIIKARNL 293
Query: 215 VPSDKGRAPDACVRIQLG-NQLRVTRPSHV---RSVNPVWNEEHMF-VASEPF-EDLIIV 268
D G D V++ L RV + V R++NP++NE F + +E E II+
Sbjct: 294 KAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIII 353
Query: 269 TVEDRIRPGKDEILGR 284
TV D+ + +++++G+
Sbjct: 354 TVMDKDKLSRNDVIGK 369
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 38/293 (12%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEV---KLGNYKGITKHLEKNQNPVWNQIFAFSKERL 98
L V VV+A++L D+ G DPY V L + TK + + NP+WN+ F F E +
Sbjct: 266 LDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDV 325
Query: 99 QSSLLEVTV-KDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE---DKKGDQTT 154
+ L V V D+ +G +G +QVPL + W +L + + D
Sbjct: 326 STQHLTVRVFDDEGVGSSQLIGA-----AQVPLNELVPGKVKDIWLKLVKDLEIQRDTKN 380
Query: 155 KGEIMLAVW---MGTQAD--------------ESFAEAWHSDAHNISQKNLANTRSKVYF 197
+G++ L + +G + E + D+ K L ++ K
Sbjct: 381 RGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPESEDSDATDMKKLVTSKKKDVI 440
Query: 198 SPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV-RSVNPVWNEEHMF 256
+ L V V A+DL D DA V I L ++ V S+NPVWN+ F
Sbjct: 441 VRGV--LSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQTFDF 498
Query: 257 VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309
V + DL+ + V D + GKD+I GR ++ + V E + WF L
Sbjct: 499 VVEDALHDLLTLEVWDHDKFGKDKI-GRVIMTLTRVMLEGEFQE-----WFEL 545
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9R0N7|SYT7_MOUSE Synaptotagmin-7 OS=Mus musculus GN=Syt7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 51/256 (19%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIF---AFSK 95
L V V+KA+ LP D SG+ DP+V++ L +K TK KN NP WN+ F F
Sbjct: 152 LTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 211
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTT 154
E++ +L + V D D ++D +G VS+ L++V L + + W L+ +
Sbjct: 212 EKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSDGSGS 266
Query: 155 KGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDL 214
+GE++L+ + ++P + V + +A++L
Sbjct: 267 RGELLLS---------------------------------LCYNPSANSIIVNIIKARNL 293
Query: 215 VPSDKGRAPDACVRIQL----GNQLRVTRPSHVRSVNPVWNEEHMF-VASEPF-EDLIIV 268
D G D V++ L + + R++NP++NE F + +E E II+
Sbjct: 294 KAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIII 353
Query: 269 TVEDRIRPGKDEILGR 284
TV D+ + +++++G+
Sbjct: 354 TVMDKDKLSRNDVIGK 369
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 22 RYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIT 76
+ G K YDL L+ +++++ARNL D +G DP+V+V L YK T
Sbjct: 4564 KKHGSSKLQINYDLGNLI----IHILQARNLVPRDNNGYSDPFVKVYLLPGRGAEYKRRT 4619
Query: 77 KHLEKNQNPVWNQIF---AFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRV 132
KH++K+ NP WNQ + S E+L+ LEVTV D D +DF+G V +DLS
Sbjct: 4620 KHVQKSLNPEWNQTVIYKSISMEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSST---- 4675
Query: 133 PPDSPL--APQWYRLEDK 148
S L P+WY L+++
Sbjct: 4676 ---SHLDNTPRWYPLKEQ 4690
|
May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking. Homo sapiens (taxid: 9606) |
| >sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 108/280 (38%), Gaps = 62/280 (22%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L + +V+ +NLP D++GS DPY VK+ N I VW + F E Q
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPII------RTATVWKTLCPFWGEEYQVH 60
Query: 102 L------LEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTT 154
L + V D+D + +DD +G+V L + S W L + D+
Sbjct: 61 LPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEV 116
Query: 155 KGEI--MLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQ 212
+GEI L VW G +A LR V EA+
Sbjct: 117 QGEIHLRLEVWPGARA---------------------------------CRLRCSVLEAR 143
Query: 213 DLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVED 272
DL P D+ D VR++ + R T +S P WNE F E + + V D
Sbjct: 144 DLAPKDRNGTSDPFVRVRYKGRTRETSIVK-KSCYPRWNETFEFELQEGAMEALCVEAWD 202
Query: 273 RIRPGKDEILGRELIPVR--NVPQRHETTKLPDPRWFNLH 310
+++ LG+ +I V+ V Q+ E WF L
Sbjct: 203 WDLVSRNDFLGKVVIDVQRLRVVQQEEG-------WFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Homo sapiens (taxid: 9606) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 108/280 (38%), Gaps = 62/280 (22%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L + +V+ +NLP D++GS DPY VK+ N I VW + F E Q
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPII------RTATVWKTLCPFWGEEYQVH 60
Query: 102 L------LEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTT 154
L + V D+D + +DD +G+V L + S W L + D+
Sbjct: 61 LPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEV 116
Query: 155 KGEI--MLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQ 212
+GEI L VW G +A LR V EA+
Sbjct: 117 QGEIHLRLEVWPGARA---------------------------------CRLRCSVLEAR 143
Query: 213 DLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVED 272
DL P D+ D VR++ + R T +S P WNE F E + + V D
Sbjct: 144 DLAPKDRNGTSDPFVRVRYKGRTRETSIVK-KSCYPRWNETFEFELQEGAMEALCVEAWD 202
Query: 273 RIRPGKDEILGRELIPVR--NVPQRHETTKLPDPRWFNLH 310
+++ LG+ +I V+ V Q+ E WF L
Sbjct: 203 WDLVSRNDFLGKVVIDVQRLRVVQQEEG-------WFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| 356523572 | 1004 | PREDICTED: multiple C2 and transmembrane | 0.984 | 0.766 | 0.774 | 0.0 | |
| 356542988 | 1010 | PREDICTED: multiple C2 and transmembrane | 0.984 | 0.762 | 0.769 | 0.0 | |
| 255561614 | 1032 | synaptotagmin, putative [Ricinus communi | 0.978 | 0.741 | 0.781 | 0.0 | |
| 225460739 | 1002 | PREDICTED: multiple C2 and transmembrane | 0.985 | 0.769 | 0.743 | 0.0 | |
| 225460741 | 1005 | PREDICTED: multiple C2 and transmembrane | 0.985 | 0.767 | 0.743 | 0.0 | |
| 297845280 | 1025 | C2 domain-containing protein [Arabidopsi | 0.984 | 0.751 | 0.748 | 0.0 | |
| 15219915 | 1029 | C2 domain-containing protein [Arabidopsi | 0.983 | 0.747 | 0.750 | 0.0 | |
| 3287696 | 783 | Strong similarity to phosphoribosylanthr | 0.983 | 0.982 | 0.750 | 0.0 | |
| 224135999 | 774 | predicted protein [Populus trichocarpa] | 0.983 | 0.993 | 0.759 | 0.0 | |
| 296081134 | 963 | unnamed protein product [Vitis vinifera] | 0.966 | 0.785 | 0.741 | 0.0 |
| >gi|356523572|ref|XP_003530411.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/788 (77%), Positives = 689/788 (87%), Gaps = 18/788 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGG-DKTASTYDLVELMHYLCVNVVKARNLPVMDVSG 59
+PK NPE+ LVETSPPLAARLRYRGG DK ++TYDLVE M+YL VNVVKAR+LPV D++G
Sbjct: 229 IPKQNPEYSLVETSPPLAARLRYRGGRDKISTTYDLVEQMNYLYVNVVKARDLPVKDITG 288
Query: 60 SLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVG 119
SLDPYVEVKLGNYKG+TKHL+KNQNPVWNQIFAFSK+RLQS+LLEVTVKDKDI KDDFVG
Sbjct: 289 SLDPYVEVKLGNYKGLTKHLDKNQNPVWNQIFAFSKDRLQSNLLEVTVKDKDIVKDDFVG 348
Query: 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQT-TKGEIMLAVWMGTQADESFAEAWHS 178
RV DL++VPLRVPPDSPLAPQWY LEDKKG + GEIMLAVWMGTQADESF EAWHS
Sbjct: 349 RVMFDLTEVPLRVPPDSPLAPQWYILEDKKGQKIHNNGEIMLAVWMGTQADESFPEAWHS 408
Query: 179 DAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVT 238
DAHNIS NLANTRSKVYFSPKLYYLRV V EAQDLVPSDKGRAPDA VR+QLGNQ+R T
Sbjct: 409 DAHNISHSNLANTRSKVYFSPKLYYLRVQVIEAQDLVPSDKGRAPDAIVRVQLGNQMRFT 468
Query: 239 RPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHET 298
RPS +R +NPVWN+E MFVA+EPFED IIVTVED++ EILGRE+I VR+VP RHE+
Sbjct: 469 RPSQIRGINPVWNDELMFVAAEPFEDFIIVTVEDKVG-SSVEILGREIISVRSVPPRHES 527
Query: 299 TK-LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTS 357
+K LPD RWFNLH+PS EE EK K+KFSSKI + CLEAGYHV DESTHFSSDLQ S
Sbjct: 528 SKKLPDSRWFNLHRPSAVGEEETEKKKDKFSSKIHLRVCLEAGYHVLDESTHFSSDLQPS 587
Query: 358 SKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWN 417
SK LRK +IG LELGILSA+NL+ MK+++G+ TDAYCVAKYGNKW+RTRT+LDTL+PRWN
Sbjct: 588 SKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWN 647
Query: 418 EQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477
EQYTW+V+DPCTVIT+GVFDN ++NGS DA+DQRIGKVRIRLSTLETDR+YTH+YPLL+
Sbjct: 648 EQYTWEVHDPCTVITVGVFDNHHINGSS-DARDQRIGKVRIRLSTLETDRVYTHFYPLLV 706
Query: 478 LTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIV 537
L P+GLK NGELHLA+RFTCTAWVNMV +YGRPLLPKMHYVQPIP ID LRHQAMQIV
Sbjct: 707 LQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIV 766
Query: 538 AAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELL---SAICRWFNDICTWR 594
AA L RAEPPLRRE +EYMLDVDYHMWSLR+ KANF RI+ LL +A+C+WF+DICTWR
Sbjct: 767 AARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFHRIMSLLKGVTAVCKWFDDICTWR 826
Query: 595 NPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHL 654
NP+ T L+HVLFL LV YPELILPTIFLYLF+IG+WNYR RPR+PPH+DA+LSQA AH
Sbjct: 827 NPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRNPPHMDARLSQAETAH- 885
Query: 655 DELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAI 714
DELDEEFD+FPT++PSD VRMRY+RLRSV G++QT+VGDLA+Q ERAQAI
Sbjct: 886 ---------PDELDEEFDTFPTTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAI 936
Query: 715 LCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSF 774
L WRD RAT IF+IFS IWAVF Y+TPF+VVA+LIGL+MLRHPRFRSKMPSVPVNFFK
Sbjct: 937 LGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILIGLFMLRHPRFRSKMPSVPVNFFKRL 996
Query: 775 PSKSDMLI 782
PSKSDMLI
Sbjct: 997 PSKSDMLI 1004
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542988|ref|XP_003539945.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/790 (76%), Positives = 690/790 (87%), Gaps = 20/790 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGG---DKTASTYDLVELMHYLCVNVVKARNLPVMDV 57
+P+ NPE+ LVETSPPLAARLRYRGG DK ++TYDLVE M+YL VNVVKAR+LPVMD+
Sbjct: 233 IPRQNPEYSLVETSPPLAARLRYRGGGGGDKISTTYDLVEQMNYLYVNVVKARDLPVMDI 292
Query: 58 SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDF 117
+GSLDPYVEVKLGNYKG+TKHL+KNQNPVW QIFAFSK+RLQS+LLEVTVKDKDIGKDDF
Sbjct: 293 TGSLDPYVEVKLGNYKGLTKHLDKNQNPVWKQIFAFSKDRLQSNLLEVTVKDKDIGKDDF 352
Query: 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQT-TKGEIMLAVWMGTQADESFAEAW 176
VGRV DL++VPLRVPPDSPLAPQWYRLEDKKG + GEIMLAVWMGTQADESF EAW
Sbjct: 353 VGRVMFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHNNGEIMLAVWMGTQADESFPEAW 412
Query: 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLR 236
HSDAHN+S NL+NTRSKVYFSPKLYYLRV V EAQDLVPS+KGR PD+ VR+QLGNQ+R
Sbjct: 413 HSDAHNVSHSNLSNTRSKVYFSPKLYYLRVQVIEAQDLVPSEKGRPPDSLVRVQLGNQMR 472
Query: 237 VTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH 296
TRPS +R NPVWN+E MFVA+EPFED IIVTVED++ P EILGRE+I VR+V RH
Sbjct: 473 FTRPSQIRGTNPVWNDELMFVAAEPFEDFIIVTVEDKVGPNV-EILGREIISVRSVLPRH 531
Query: 297 ETTK-LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQ 355
E++K LPD RWFNLH+P+ EE +K KEKFSSKI + CLEAGYHV DESTHFSSDLQ
Sbjct: 532 ESSKKLPDSRWFNLHRPNAVGEEETQKKKEKFSSKIHLRVCLEAGYHVLDESTHFSSDLQ 591
Query: 356 TSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPR 415
SSK LRK +IG LELGILSA+NL+ MK+++G+ TDAYCVAKYGNKW+RTRT+LDTL+PR
Sbjct: 592 PSSKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPR 651
Query: 416 WNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
WNEQYTW+V+DPCTVIT+GVFDN ++NGS DA+DQRIGKVRIRLSTLETDR+YTH+YPL
Sbjct: 652 WNEQYTWEVHDPCTVITVGVFDNHHINGSS-DARDQRIGKVRIRLSTLETDRVYTHFYPL 710
Query: 476 LLLTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQ 535
L+L P+GLK NGELHLA+RFTCTAWVNMV +YGRPLLPKMHYVQPIP ID LRHQAMQ
Sbjct: 711 LVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQ 770
Query: 536 IVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELL---SAICRWFNDICT 592
IVAA L RAEPPLRRE +EYMLDVDYHMWSLR+ KANFQRI+ LL +AIC+WF+DICT
Sbjct: 771 IVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFQRIMSLLKGVTAICKWFDDICT 830
Query: 593 WRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINA 652
WRNP+ T L+HVLFL LV YPELILPTIFLYLF+IG+WNYR RPRHPPH+DA+LSQA A
Sbjct: 831 WRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRHPPHMDARLSQAEAA 890
Query: 653 HLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQ 712
H DELDEEFD+FPT++PSD VRMRY+RLRSV G++QT+VGDLA+Q ERAQ
Sbjct: 891 H----------PDELDEEFDTFPTTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQ 940
Query: 713 AILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFK 772
AIL WRD RAT IF+IFS IWAVF Y+TPF+VVA+L+GLYMLRHPRFRSKMPSVPVNFFK
Sbjct: 941 AILGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPVNFFK 1000
Query: 773 SFPSKSDMLI 782
PSKSDMLI
Sbjct: 1001 RLPSKSDMLI 1010
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561614|ref|XP_002521817.1| synaptotagmin, putative [Ricinus communis] gi|223539030|gb|EEF40627.1| synaptotagmin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1235 bits (3196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/786 (78%), Positives = 682/786 (86%), Gaps = 21/786 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGS 60
+P+ NPE+LLVET PP+AARLRYRGGDKT STYDLVE MHYL V+VVKAR+LPVMDV+GS
Sbjct: 264 VPRQNPEYLLVETRPPVAARLRYRGGDKTTSTYDLVEQMHYLYVSVVKARDLPVMDVTGS 323
Query: 61 LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG TKHLEKNQ+PVWNQIFAFSK+RLQ++LLEVTVKDKD KDDFVGR
Sbjct: 324 LDPYVEVKLGNYKGRTKHLEKNQHPVWNQIFAFSKDRLQANLLEVTVKDKDFVKDDFVGR 383
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
+ DLS+VPLRVPPDSPLAPQWY+LEDKKGD+ TKGEIMLAVWMGTQADESF EAWH+DA
Sbjct: 384 IPFDLSEVPLRVPPDSPLAPQWYKLEDKKGDK-TKGEIMLAVWMGTQADESFPEAWHNDA 442
Query: 181 HNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRP 240
H+I NLA+TRSKVYFSPKLYYLRV V EAQDL PS+KGRAPD V++QLGNQ RVTRP
Sbjct: 443 HDIGHTNLADTRSKVYFSPKLYYLRVHVMEAQDLFPSEKGRAPDVYVKVQLGNQGRVTRP 502
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
+ RS+NP WNEE MFVASEPFED IIV+VEDR+ PGKDEI+GR +IPVR VP R ET K
Sbjct: 503 A--RSINPGWNEELMFVASEPFEDYIIVSVEDRVGPGKDEIMGRVIIPVREVPPRRETAK 560
Query: 301 LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKS 360
LPDPRWFNL KPSL AEE EK KEKFSSKIL+ CL+ GYHV DESTHFSSDLQ SSK
Sbjct: 561 LPDPRWFNLFKPSL-AEEEGEKKKEKFSSKILLCLCLDTGYHVLDESTHFSSDLQPSSKF 619
Query: 361 LRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQY 420
LRK IG LELGILSA+NL+ +KS K TDAYCVAKYGNKW+RTRT+LD L PRWNEQY
Sbjct: 620 LRKERIGILELGILSARNLLPLKS---KATDAYCVAKYGNKWVRTRTLLDNLNPRWNEQY 676
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480
TWDV+DPCTVITIGVFDNC+++GSK+DAKD+RIGKVRIRLSTLETDRIYTHYYPLL+L P
Sbjct: 677 TWDVFDPCTVITIGVFDNCHISGSKEDAKDKRIGKVRIRLSTLETDRIYTHYYPLLVLQP 736
Query: 481 S-GLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAA 539
+ GLK +GE+ LALRFTCTAWVNMVT+YG+PLLPKMHY+QPI ID LRHQAMQIVAA
Sbjct: 737 AGGLKKHGEIQLALRFTCTAWVNMVTQYGKPLLPKMHYIQPISVRHIDWLRHQAMQIVAA 796
Query: 540 GLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTWRNP 596
L RAEPPLRRE +EYMLDVDYHMWSLR+ KANF RI+ LLS A+ +WFNDICTWRNP
Sbjct: 797 RLTRAEPPLRREAVEYMLDVDYHMWSLRRSKANFARIMSLLSGVAAVFKWFNDICTWRNP 856
Query: 597 VETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDE 656
V T L+HVLFL LV YPELILPTIFLYLF+IG+WNYR RPRHP H+D +LSQA H
Sbjct: 857 VTTCLVHVLFLILVCYPELILPTIFLYLFVIGVWNYRFRPRHPSHMDIRLSQADTVH--- 913
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILC 716
DELDEEFDSFPTSRP+D VRMRY+RLRSV G++QT+VGDLASQ ERAQAIL
Sbjct: 914 -------PDELDEEFDSFPTSRPADIVRMRYDRLRSVAGRVQTVVGDLASQGERAQAILS 966
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776
WRD RAT IF+IFS IWAVF Y+TPF+VVAVL+GLY+LRHPRFR KMPSVPVNFFK PS
Sbjct: 967 WRDPRATAIFIIFSLIWAVFIYITPFQVVAVLVGLYLLRHPRFRGKMPSVPVNFFKRLPS 1026
Query: 777 KSDMLI 782
KSDML+
Sbjct: 1027 KSDMLL 1032
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460739|ref|XP_002273003.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1235 bits (3195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/786 (74%), Positives = 678/786 (86%), Gaps = 15/786 (1%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGS 60
+P+ NPEF LVET PP+AAR+ YRG +KTASTYDLVE MHYL V VVKAR+LPVMD++GS
Sbjct: 228 IPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGS 287
Query: 61 LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG TKHLEKNQNPVWNQIFAFSKERLQS+L+E+ VKDKDIGKDDFVGR
Sbjct: 288 LDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGR 347
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
V+ +LS VP+RVPPDSPLAPQWY+LED++G +T GE+MLAVWMGTQADE + +AWHSDA
Sbjct: 348 VTFELSDVPVRVPPDSPLAPQWYKLEDRRGVKTG-GEVMLAVWMGTQADECYPDAWHSDA 406
Query: 181 HNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRP 240
H+IS +NLA TRSKVYFSPKLYYLRV + EAQDLVP +KGR A V+IQLGNQ+R T+P
Sbjct: 407 HSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKP 466
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
RS++ WNEE MFVASEPFED II++VEDR+ PGKDEILGR +IP+R+VP R ++TK
Sbjct: 467 FQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTK 526
Query: 301 LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKS 360
LPD RWFNLHKP E +K + KFSSKI + CLEAGYHV DESTHFSSDLQ SSK
Sbjct: 527 LPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKL 586
Query: 361 LRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQY 420
LR+ IG LE+GILSA+NL+ MKSK G+ TDAYCVAKYGNKW+RTRT+LDTLAPRWNEQY
Sbjct: 587 LRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQY 646
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480
TW+V+DPCTVITIGVFDNC++NGSKDD++DQRIGKVRIRLSTLET+RIYTHYYPLL+L+P
Sbjct: 647 TWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSP 706
Query: 481 S-GLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAA 539
S GLK +GEL LALRFTCTAWVNMV +YG PLLPKMHYVQPIP + ID LRHQAMQIVAA
Sbjct: 707 SAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAA 766
Query: 540 GLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTWRNP 596
L RAEPPL+RE++EYMLDVDYHM+SLR+ KANF R++ LLS A+C+ +NDIC WRNP
Sbjct: 767 RLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNP 826
Query: 597 VETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDE 656
V T L+H+LFL LV YPELILPT+F YLF+IG+WNYR RPRHPPH+DA+LSQA
Sbjct: 827 VTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQA------- 879
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILC 716
EF DEL+EEFD+FP+++PSD +RMRY+RLR V G++QT+VGDLA+Q ERAQAIL
Sbjct: 880 ---EFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILS 936
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776
WRD RAT IFLIFS IWA+F Y+TPF+VVAVL+GLY+LRHPRFRSKMPSVPVNFFK PS
Sbjct: 937 WRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVPVNFFKRLPS 996
Query: 777 KSDMLI 782
KSDML+
Sbjct: 997 KSDMLL 1002
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460741|ref|XP_002273028.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1234 bits (3194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/786 (74%), Positives = 678/786 (86%), Gaps = 15/786 (1%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGS 60
+P+ NPEF LVET PP+AAR+ YRG +KTASTYDLVE MHYL V VVKAR+LPVMD++GS
Sbjct: 231 IPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGS 290
Query: 61 LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG TKHLEKNQNPVWNQIFAFSKERLQS+L+E+ VKDKDIGKDDFVGR
Sbjct: 291 LDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGR 350
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
V+ +LS VP+RVPPDSPLAPQWY+LED++G +T GE+MLAVWMGTQADE + +AWHSDA
Sbjct: 351 VTFELSDVPVRVPPDSPLAPQWYKLEDRRGVKTG-GEVMLAVWMGTQADECYPDAWHSDA 409
Query: 181 HNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRP 240
H+IS +NLA TRSKVYFSPKLYYLRV + EAQDLVP +KGR A V+IQLGNQ+R T+P
Sbjct: 410 HSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKP 469
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
RS++ WNEE MFVASEPFED II++VEDR+ PGKDEILGR +IP+R+VP R ++TK
Sbjct: 470 FQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTK 529
Query: 301 LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKS 360
LPD RWFNLHKP E +K + KFSSKI + CLEAGYHV DESTHFSSDLQ SSK
Sbjct: 530 LPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKL 589
Query: 361 LRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQY 420
LR+ IG LE+GILSA+NL+ MKSK G+ TDAYCVAKYGNKW+RTRT+LDTLAPRWNEQY
Sbjct: 590 LRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQY 649
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480
TW+V+DPCTVITIGVFDNC++NGSKDD++DQRIGKVRIRLSTLET+RIYTHYYPLL+L+P
Sbjct: 650 TWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSP 709
Query: 481 S-GLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAA 539
S GLK +GEL LALRFTCTAWVNMV +YG PLLPKMHYVQPIP + ID LRHQAMQIVAA
Sbjct: 710 SAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAA 769
Query: 540 GLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTWRNP 596
L RAEPPL+RE++EYMLDVDYHM+SLR+ KANF R++ LLS A+C+ +NDIC WRNP
Sbjct: 770 RLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNP 829
Query: 597 VETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDE 656
V T L+H+LFL LV YPELILPT+F YLF+IG+WNYR RPRHPPH+DA+LSQA
Sbjct: 830 VTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQA------- 882
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILC 716
EF DEL+EEFD+FP+++PSD +RMRY+RLR V G++QT+VGDLA+Q ERAQAIL
Sbjct: 883 ---EFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILS 939
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776
WRD RAT IFLIFS IWA+F Y+TPF+VVAVL+GLY+LRHPRFRSKMPSVPVNFFK PS
Sbjct: 940 WRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVPVNFFKRLPS 999
Query: 777 KSDMLI 782
KSDML+
Sbjct: 1000 KSDMLL 1005
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845280|ref|XP_002890521.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336363|gb|EFH66780.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/790 (74%), Positives = 680/790 (86%), Gaps = 20/790 (2%)
Query: 2 PKTNPEFLLVETSPPLAARLR----YRG-GDKTASTYDLVELMHYLCVNVVKARNLPVMD 56
P+ NPEF L+ETSPPLAAR+R YR GDKT+STYDLVE MHYL V+VVKAR+LPVMD
Sbjct: 247 PRQNPEFQLIETSPPLAARMRQSYYYRNSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMD 306
Query: 57 VSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-GKD 115
VSGSLDPYVEVKLGNYKG+TKHLEKN NP+W QIFAFSKERLQS+LLEVTVKDKD+ KD
Sbjct: 307 VSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKD 366
Query: 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEA 175
DFVGRV +DL++VPLRVPPDSPLAPQWYRLEDKKG +T +GEIMLAVWMGTQADESF +A
Sbjct: 367 DFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDA 426
Query: 176 WHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL 235
WHSDAH +S NL+NTRSKVYFSPKLYYLR+ V EAQDLVPSDKGR PD V+IQ G Q+
Sbjct: 427 WHSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDVVVKIQAGFQM 486
Query: 236 RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQR 295
R TR +R++NP W+EE MFV SEPFED++IV+V+DRI PGKDEILGR IPVR+VP R
Sbjct: 487 RATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVR 546
Query: 296 HETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQ 355
E K+PDPRWFNL + S+S EE EK KEKFSSKIL+ C+EAGYHV DESTHFSSDLQ
Sbjct: 547 QEVGKMPDPRWFNLQRHSMSMEEETEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQ 606
Query: 356 TSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPR 415
SSK LRK SIG LELGILSA+NLM MK KDG++TD YCVAKYGNKW+RTRT+LD LAP+
Sbjct: 607 PSSKHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPK 666
Query: 416 WNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
WNEQYTW+V+DPCTVITIGVFDN +VN D++DQRIGKVR+RLSTLETDR+YTHYYPL
Sbjct: 667 WNEQYTWEVHDPCTVITIGVFDNSHVNDG-GDSRDQRIGKVRVRLSTLETDRVYTHYYPL 725
Query: 476 LLLTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQ 535
L+LTP GLK NGEL LALR+TCT +VNM+ +YGRPLLPKMHY+QPIP ID LRHQAMQ
Sbjct: 726 LVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQ 785
Query: 536 IVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLSA---ICRWFNDICT 592
IVA L R+EPPLRREV+EYMLDVDYHM+SLR+ KANF RI+ LLS+ +C+WFNDICT
Sbjct: 786 IVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICT 845
Query: 593 WRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINA 652
WRNP+ T L+HVLFL LV YPELILPT+FLYLF+IGMWNYR RPRHPPH+DA++SQA NA
Sbjct: 846 WRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNA 905
Query: 653 HLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQ 712
H DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QT+VGDLA+Q ER Q
Sbjct: 906 H----------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQ 955
Query: 713 AILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFK 772
A+L WRD RAT +F++F+ IWAVF YVTPF+V+A++IGL+MLRHPRFRS+MPSVP NFFK
Sbjct: 956 ALLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFK 1015
Query: 773 SFPSKSDMLI 782
P+KSDML+
Sbjct: 1016 RLPAKSDMLL 1025
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219915|ref|NP_173675.1| C2 domain-containing protein [Arabidopsis thaliana] gi|6587829|gb|AAF18518.1|AC006551_4 Highly similar to phosphoribosylanthranilate transferase [Arabidopsis thaliana] gi|332192139|gb|AEE30260.1| C2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/789 (75%), Positives = 680/789 (86%), Gaps = 20/789 (2%)
Query: 3 KTNPEFLLVETSPPLAARLR----YRG-GDKTASTYDLVELMHYLCVNVVKARNLPVMDV 57
+ NPEF L+ETSPPLAAR+R YR GDKT+STYDLVE MHYL V+VVKAR+LPVMDV
Sbjct: 252 QQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDV 311
Query: 58 SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-GKDD 116
SGSLDPYVEVKLGNYKG+TKHLEKN NP+W QIFAFSKERLQS+LLEVTVKDKD+ KDD
Sbjct: 312 SGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDD 371
Query: 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAW 176
FVGRV +DL++VPLRVPPDSPLAPQWYRLEDKKG +T +GEIMLAVWMGTQADESF +AW
Sbjct: 372 FVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAW 431
Query: 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLR 236
HSDAH +S NL+NTRSKVYFSPKLYYLR+ V EAQDLVPSDKGR PDA V+IQ GNQ+R
Sbjct: 432 HSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMR 491
Query: 237 VTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH 296
TR +R++NP W+EE MFV SEPFED++IV+V+DRI PGKDEILGR IPVR+VP R
Sbjct: 492 ATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQ 551
Query: 297 ETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQT 356
E K+PDPRWFNL + S+S EE EK KEKFSSKIL+ C+EAGYHV DESTHFSSDLQ
Sbjct: 552 EVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQP 611
Query: 357 SSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRW 416
SSK LRK SIG LELGILSA+NLM MK KDG++TD YCVAKYGNKW+RTRT+LD LAP+W
Sbjct: 612 SSKHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPKW 671
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
NEQYTW+V+DPCTVITIGVFDN +VN D KDQRIGKVR+RLSTLETDR+YTH+YPLL
Sbjct: 672 NEQYTWEVHDPCTVITIGVFDNSHVNDG-GDFKDQRIGKVRVRLSTLETDRVYTHFYPLL 730
Query: 477 LLTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQI 536
+LTP GLK NGEL LALR+TCT +VNM+ +YGRPLLPKMHY+QPIP ID LRHQAMQI
Sbjct: 731 VLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQI 790
Query: 537 VAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLSA---ICRWFNDICTW 593
VA L R+EPPLRREV+EYMLDVDYHM+SLR+ KANF RI+ LLS+ +C+WFNDICTW
Sbjct: 791 VATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTW 850
Query: 594 RNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAH 653
RNP+ T L+HVLFL LV YPELILPT+FLYLF+IGMWNYR RPRHPPH+DA++SQA NAH
Sbjct: 851 RNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAH 910
Query: 654 LDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQA 713
DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QT+VGDLA+Q ER QA
Sbjct: 911 ----------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQA 960
Query: 714 ILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773
+L WRD RAT +F++F+ IWAVF YVTPF+V+A++IGL+MLRHPRFRS+MPSVP NFFK
Sbjct: 961 LLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKR 1020
Query: 774 FPSKSDMLI 782
P+KSDML+
Sbjct: 1021 LPAKSDMLL 1029
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3287696|gb|AAC25524.1| Strong similarity to phosphoribosylanthranilate transferase gb|D86180 from Pisum sativum. This ORF may be part of a larger gene that lies in the overlapping region [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/789 (75%), Positives = 680/789 (86%), Gaps = 20/789 (2%)
Query: 3 KTNPEFLLVETSPPLAARLR----YRG-GDKTASTYDLVELMHYLCVNVVKARNLPVMDV 57
+ NPEF L+ETSPPLAAR+R YR GDKT+STYDLVE MHYL V+VVKAR+LPVMDV
Sbjct: 6 QQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDV 65
Query: 58 SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-GKDD 116
SGSLDPYVEVKLGNYKG+TKHLEKN NP+W QIFAFSKERLQS+LLEVTVKDKD+ KDD
Sbjct: 66 SGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDD 125
Query: 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAW 176
FVGRV +DL++VPLRVPPDSPLAPQWYRLEDKKG +T +GEIMLAVWMGTQADESF +AW
Sbjct: 126 FVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAW 185
Query: 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLR 236
HSDAH +S NL+NTRSKVYFSPKLYYLR+ V EAQDLVPSDKGR PDA V+IQ GNQ+R
Sbjct: 186 HSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMR 245
Query: 237 VTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH 296
TR +R++NP W+EE MFV SEPFED++IV+V+DRI PGKDEILGR IPVR+VP R
Sbjct: 246 ATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQ 305
Query: 297 ETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQT 356
E K+PDPRWFNL + S+S EE EK KEKFSSKIL+ C+EAGYHV DESTHFSSDLQ
Sbjct: 306 EVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQP 365
Query: 357 SSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRW 416
SSK LRK SIG LELGILSA+NLM MK KDG++TD YCVAKYGNKW+RTRT+LD LAP+W
Sbjct: 366 SSKHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPKW 425
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
NEQYTW+V+DPCTVITIGVFDN +VN D KDQRIGKVR+RLSTLETDR+YTH+YPLL
Sbjct: 426 NEQYTWEVHDPCTVITIGVFDNSHVNDG-GDFKDQRIGKVRVRLSTLETDRVYTHFYPLL 484
Query: 477 LLTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQI 536
+LTP GLK NGEL LALR+TCT +VNM+ +YGRPLLPKMHY+QPIP ID LRHQAMQI
Sbjct: 485 VLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQI 544
Query: 537 VAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLSA---ICRWFNDICTW 593
VA L R+EPPLRREV+EYMLDVDYHM+SLR+ KANF RI+ LLS+ +C+WFNDICTW
Sbjct: 545 VATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTW 604
Query: 594 RNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAH 653
RNP+ T L+HVLFL LV YPELILPT+FLYLF+IGMWNYR RPRHPPH+DA++SQA NAH
Sbjct: 605 RNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAH 664
Query: 654 LDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQA 713
DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QT+VGDLA+Q ER QA
Sbjct: 665 ----------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQA 714
Query: 714 ILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773
+L WRD RAT +F++F+ IWAVF YVTPF+V+A++IGL+MLRHPRFRS+MPSVP NFFK
Sbjct: 715 LLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKR 774
Query: 774 FPSKSDMLI 782
P+KSDML+
Sbjct: 775 LPAKSDMLL 783
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135999|ref|XP_002327356.1| predicted protein [Populus trichocarpa] gi|222835726|gb|EEE74161.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/785 (75%), Positives = 676/785 (86%), Gaps = 16/785 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGS 60
MP+ NPEFLLVETSPP+AAR+RYRG DK ASTYDLVE MHYL V+VVKAR+LPVMDVSGS
Sbjct: 3 MPRQNPEFLLVETSPPVAARMRYRGWDKMASTYDLVEQMHYLYVSVVKARDLPVMDVSGS 62
Query: 61 LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG TK+LEKNQ+PVW QIFAF+K+RLQS+LLEVTVKDKD GKDDFVGR
Sbjct: 63 LDPYVEVKLGNYKGKTKYLEKNQSPVWTQIFAFAKDRLQSNLLEVTVKDKDFGKDDFVGR 122
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
V DLS+VPLRVPPDSPLAPQWY LEDKKG +T +GEIMLAVWMGTQADESF EAWHSDA
Sbjct: 123 VFFDLSEVPLRVPPDSPLAPQWYILEDKKGVKT-RGEIMLAVWMGTQADESFPEAWHSDA 181
Query: 181 HNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRP 240
H+IS NL+NTRSKVYFSPKLYYLRV V EAQDLVPSD+GR PD V++QLGNQLRVT+P
Sbjct: 182 HDISHTNLSNTRSKVYFSPKLYYLRVHVIEAQDLVPSDRGRMPDVYVKVQLGNQLRVTKP 241
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
S +R++NP+WN+E + VASEPFED IIV+VEDRI GK EILGR ++ VR+VP R ET K
Sbjct: 242 SEMRTINPIWNDELILVASEPFEDFIIVSVEDRIGQGKVEILGRVILSVRDVPTRLETHK 301
Query: 301 LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKS 360
LPDPRW NL +PS EEG +K + SSKIL+ CL+AGYHV DESTHFSSDLQ SSK
Sbjct: 302 LPDPRWLNLLRPSF-IEEGDKKKDKF-SSKILLCLCLDAGYHVLDESTHFSSDLQPSSKH 359
Query: 361 LRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQY 420
LRK +IG LELGILSA+NL+ +K KDG+ TDAYCV+KYGNKW+RTRTILDTL PRWNEQY
Sbjct: 360 LRKQNIGILELGILSARNLLPLKGKDGRTTDAYCVSKYGNKWVRTRTILDTLNPRWNEQY 419
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480
TWDVYDPCTVITIGVFDNC++NGSK+DA+DQRIGKVRIRLSTLET+RIYTHYYPLL+LT
Sbjct: 420 TWDVYDPCTVITIGVFDNCHINGSKEDARDQRIGKVRIRLSTLETNRIYTHYYPLLVLTH 479
Query: 481 SGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAAG 540
SGLK +GELHLALRFTCTAWVNM+ YG+PLLPKMHY PI ID LRHQAMQIVAA
Sbjct: 480 SGLKKHGELHLALRFTCTAWVNMLAHYGKPLLPKMHYYHPISVRHIDWLRHQAMQIVAAR 539
Query: 541 LGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTWRNPV 597
L R+EPPLRRE +EYMLDVDYHMWSLR+ KAN R++ +LS A+C+WFNDIC WRNP+
Sbjct: 540 LARSEPPLRREAVEYMLDVDYHMWSLRRSKANVHRMMSMLSGVTAVCKWFNDICYWRNPI 599
Query: 598 ETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDEL 657
T L+HVLF LV YPELILPTIFLYLF+IG+WNYR RPRHPPH+D +LSQA NAH
Sbjct: 600 TTCLVHVLFFILVCYPELILPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSQADNAH---- 655
Query: 658 VKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCW 717
DELDEEFD+FP SRPSD VRMRY+R+RSV G++QT+VGDLASQ ERAQA+L W
Sbjct: 656 ------PDELDEEFDTFPASRPSDIVRMRYDRMRSVAGRVQTVVGDLASQGERAQALLSW 709
Query: 718 RDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSK 777
RD RAT IF++FS I AV YVT F+VVAVL+GLY+LRHPRFRS+MPSVPVNFFK PS+
Sbjct: 710 RDPRATAIFILFSLIGAVLIYVTLFQVVAVLVGLYVLRHPRFRSRMPSVPVNFFKRLPSR 769
Query: 778 SDMLI 782
+DML+
Sbjct: 770 ADMLL 774
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081134|emb|CBI18160.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/771 (74%), Positives = 665/771 (86%), Gaps = 15/771 (1%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGS 60
+P+ NPEF LVET PP+AAR+ YRG +KTASTYDLVE MHYL V VVKAR+LPVMD++GS
Sbjct: 159 IPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGS 218
Query: 61 LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG TKHLEKNQNPVWNQIFAFSKERLQS+L+E+ VKDKDIGKDDFVGR
Sbjct: 219 LDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGR 278
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
V+ +LS VP+RVPPDSPLAPQWY+LED++G +T GE+MLAVWMGTQADE + +AWHSDA
Sbjct: 279 VTFELSDVPVRVPPDSPLAPQWYKLEDRRGVKTG-GEVMLAVWMGTQADECYPDAWHSDA 337
Query: 181 HNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRP 240
H+IS +NLA TRSKVYFSPKLYYLRV + EAQDLVP +KGR A V+IQLGNQ+R T+P
Sbjct: 338 HSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKP 397
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
RS++ WNEE MFVASEPFED II++VEDR+ PGKDEILGR +IP+R+VP R ++TK
Sbjct: 398 FQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTK 457
Query: 301 LPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKS 360
LPD RWFNLHKP E +K + KFSSKI + CLEAGYHV DESTHFSSDLQ SSK
Sbjct: 458 LPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKL 517
Query: 361 LRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQY 420
LR+ IG LE+GILSA+NL+ MKSK G+ TDAYCVAKYGNKW+RTRT+LDTLAPRWNEQY
Sbjct: 518 LRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQY 577
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480
TW+V+DPCTVITIGVFDNC++NGSKDD++DQRIGKVRIRLSTLET+RIYTHYYPLL+L+P
Sbjct: 578 TWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSP 637
Query: 481 S-GLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAA 539
S GLK +GEL LALRFTCTAWVNMV +YG PLLPKMHYVQPIP + ID LRHQAMQIVAA
Sbjct: 638 SAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAA 697
Query: 540 GLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTWRNP 596
L RAEPPL+RE++EYMLDVDYHM+SLR+ KANF R++ LLS A+C+ +NDIC WRNP
Sbjct: 698 RLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNP 757
Query: 597 VETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDE 656
V T L+H+LFL LV YPELILPT+F YLF+IG+WNYR RPRHPPH+DA+LSQA
Sbjct: 758 VTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQA------- 810
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILC 716
EF DEL+EEFD+FP+++PSD +RMRY+RLR V G++QT+VGDLA+Q ERAQAIL
Sbjct: 811 ---EFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILS 867
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVP 767
WRD RAT IFLIFS IWA+F Y+TPF+VVAVL+GLY+LRHPRFRSKMPSVP
Sbjct: 868 WRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVP 918
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.980 | 0.745 | 0.748 | 0.0 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.976 | 0.988 | 0.616 | 9.3e-265 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.979 | 0.987 | 0.611 | 1.7e-263 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.974 | 0.990 | 0.605 | 3.3e-260 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.970 | 0.750 | 0.577 | 1.3e-249 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.953 | 0.720 | 0.554 | 1e-233 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.974 | 0.757 | 0.526 | 3.5e-217 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.933 | 0.751 | 0.527 | 1.4e-213 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.955 | 0.738 | 0.515 | 1.2e-209 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.957 | 0.967 | 0.482 | 1.1e-195 |
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3147 (1112.9 bits), Expect = 0., P = 0.
Identities = 589/787 (74%), Positives = 675/787 (85%)
Query: 5 NPEFLLVETSPPLAARLR----YRG-GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSG 59
NPEF L+ETSPPLAAR+R YR GDKT+STYDLVE MHYL V+VVKAR+LPVMDVSG
Sbjct: 254 NPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDVSG 313
Query: 60 SLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-GKDDFV 118
SLDPYVEVKLGNYKG+TKHLEKN NP+W QIFAFSKERLQS+LLEVTVKDKD+ KDDFV
Sbjct: 314 SLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDDFV 373
Query: 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHS 178
GRV +DL++VPLRVPPDSPLAPQWYRLEDKKG +T +GEIMLAVWMGTQADESF +AWHS
Sbjct: 374 GRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAWHS 433
Query: 179 DAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVT 238
DAH +S NL+NTRSKVYFSPKLYYLR+ V EAQDLVPSDKGR PDA V+IQ GNQ+R T
Sbjct: 434 DAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMRAT 493
Query: 239 RPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHET 298
R +R++NP W+EE MFV SEPFED++IV+V+DRI PGKDEILGR IPVR+VP R E
Sbjct: 494 RTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQEV 553
Query: 299 TKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSS 358
K+PDPRWFNL + S+S EE EK KEKFSSKIL+ C+EAGYHV DESTHFSSDLQ SS
Sbjct: 554 GKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQPSS 613
Query: 359 KSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNE 418
K LRK SIG LELGILSA+NLM MK KDG++TD YCVAKYGNKW+RTRT+LD LAP+WNE
Sbjct: 614 KHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPKWNE 673
Query: 419 QYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPXXXX 478
QYTW+V+DPCTVITIGVFDN +VN D KDQRIGKVR+RLSTLETDR+YTH+YP
Sbjct: 674 QYTWEVHDPCTVITIGVFDNSHVNDG-GDFKDQRIGKVRVRLSTLETDRVYTHFYPLLVL 732
Query: 479 TPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVA 538
TP GLK NGEL LALR+TCT +VNM+ +YGRPLLPKMHY+QPIP ID LRHQAMQIVA
Sbjct: 733 TPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVA 792
Query: 539 AGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLSAI---CRWFNDICTWRN 595
L R+EPPLRREV+EYMLDVDYHM+SLR+ KANF RI+ LLS++ C+WFNDICTWRN
Sbjct: 793 TRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTWRN 852
Query: 596 PVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLD 655
P+ T L+HVLFL LV YPELILPT+FLYLF+IGMWNYR RPRHPPH+DA++SQA NAH
Sbjct: 853 PITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAH-- 910
Query: 656 ELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAIL 715
DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QT+VGDLA+Q ER QA+L
Sbjct: 911 --------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQALL 962
Query: 716 CWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFP 775
WRD RAT +F++F+ IWAVF YVTPF+V+A++IGL+MLRHPRFRS+MPSVP NFFK P
Sbjct: 963 SWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKRLP 1022
Query: 776 SKSDMLI 782
+KSDML+
Sbjct: 1023 AKSDMLL 1029
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2547 (901.6 bits), Expect = 9.3e-265, P = 9.3e-265
Identities = 488/791 (61%), Positives = 609/791 (76%)
Query: 1 MPKTNPE-FLLVETSPPLAA-RLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS 58
M + PE F L ET P L +L GDK STYDLVE M YL V VVKA+ LP D++
Sbjct: 1 MQRPPPEDFSLKETRPHLGGGKL---SGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMT 57
Query: 59 GSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118
GS DPYVEVKLGNYKG T+H EK NP WNQ+FAFSK+R+Q+S LE TVKDKD KDD +
Sbjct: 58 GSCDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLI 117
Query: 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHS 178
GRV DL++VP RVPPDSPLAPQWYRLED+KGD+ KGE+MLAVW GTQADE+F EAWHS
Sbjct: 118 GRVVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKV-KGELMLAVWFGTQADEAFPEAWHS 176
Query: 179 DAHNISQKN-LANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRV 237
DA +S + LAN RSKVY SPKL+YLRV V EAQDL+P+DK R P+ V+ +GNQ
Sbjct: 177 DAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALR 236
Query: 238 TRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHE 297
TR S R++NP+WNE+ MFVA+EPFE+ +I++VEDR+ P KDE+LGR IP++ + +R +
Sbjct: 237 TRVSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFD 296
Query: 298 TTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTS 357
K + RW+NL K + +G EK + KF+S+I + CLE GYHV DESTH+SSDL+ +
Sbjct: 297 H-KPVNSRWYNLEKHIMV--DG-EKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352
Query: 358 SKSLRKGSIGTLELGILSAKNLMQMKSKDGK-LTDAYCVAKYGNKWIRTRTILDTLAPRW 416
+K L K +IG LELGIL+A LM MK+KDG+ TDAYCVAKYG KWIRTRTI+D+ PRW
Sbjct: 353 AKQLWKPNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRW 412
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGSKD--DAKDQRIGKVRIRLSTLETDRIYTHYYP 474
NEQYTW+V+DPCTV+T+GVFDNC+++G + AKD RIGKVRIRLSTLETDR+YTH YP
Sbjct: 413 NEQYTWEVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYP 472
Query: 475 XXXXTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAM 534
P+G+K GE+HLA+RFTC++ +NM+ Y +PLLPKMHY+ P+ +D LRHQA
Sbjct: 473 LLVLHPNGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQAT 532
Query: 535 QIVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDIC 591
QIV+ L RAEPPLR+EV+EYMLDV HMWS+R+ KANF RI+ +LS A+ +WF IC
Sbjct: 533 QIVSMRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQIC 592
Query: 592 TWRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAIN 651
W+NP+ T L+H+LF+ LV YPELILPTIFLYLFLIG+W YR RPRHPPH+D +LS A +
Sbjct: 593 NWKNPITTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADS 652
Query: 652 AHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERA 711
AH DELDEEFD+FPTSRPSD VRMRY+RLRS+ G++QT+VGDLA+Q ER
Sbjct: 653 AH----------PDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERL 702
Query: 712 QAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFF 771
Q++L WRD RAT +F++F I AV YVTPF+VVA+ IG+Y LRHPRFR K+PSVP+NFF
Sbjct: 703 QSLLSWRDPRATALFVLFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFF 762
Query: 772 KSFPSKSDMLI 782
+ P+++D ++
Sbjct: 763 RRLPARTDCML 773
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2535 (897.4 bits), Expect = 1.7e-263, P = 1.7e-263
Identities = 484/792 (61%), Positives = 604/792 (76%)
Query: 1 MPKTNPE-FLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSG 59
M + PE F L ET P L GDK +TYDLVE M YL V VVKA+ LP D++G
Sbjct: 1 MQRPPPEDFSLKETKPHLGGGKVT--GDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTG 58
Query: 60 SLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVG 119
S DPYVEVKLGNY+G T+H EK NP WNQ+FAFSK+R+Q+S LE TVKDKD+ KDD +G
Sbjct: 59 SCDPYVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIG 118
Query: 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSD 179
RV DL+++P RVPPDSPLAPQWYRLED KG Q KGE+MLAVW GTQADE+F EAWHSD
Sbjct: 119 RVVFDLNEIPKRVPPDSPLAPQWYRLEDGKG-QKVKGELMLAVWFGTQADEAFPEAWHSD 177
Query: 180 AHNISQKN-LANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVT 238
A +S + LAN RSKVY SPKL+YLRV V EAQDL+PSDKGR P+ V++ +GNQ T
Sbjct: 178 AATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRT 237
Query: 239 RPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHET 298
R S RS+NP+WNE+ MFV +EPFE+ +I++VEDR+ P KDE+LGR +P++ + +R +
Sbjct: 238 RVSQSRSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDY 297
Query: 299 TKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSS 358
+ + RWFNL K + EG EK + KF+SKI + CLE GYHV DESTH+SSDL+ ++
Sbjct: 298 RPV-NSRWFNLEKHVIM--EGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTA 354
Query: 359 KSLRKGSIGTLELGILSAKNLMQMKSKDGK--LTDAYCVAKYGNKWIRTRTILDTLAPRW 416
K L K +IG LELG+L+A LM MK+K+G TDAYCVAKYG KWIRTRTI+D+ PRW
Sbjct: 355 KQLWKPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRW 414
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGS-KDDA--KDQRIGKVRIRLSTLETDRIYTHYY 473
NEQYTW+V+DPCTV+T+GVFDNC+++G K++ KD RIGKVRIRLSTLE DR+YTH Y
Sbjct: 415 NEQYTWEVFDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSY 474
Query: 474 PXXXXTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQA 533
P PSG+K GE+HLA+RFTC++ +NM+ Y PLLPKMHY+ P+ +D LRHQA
Sbjct: 475 PLLVLHPSGVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQA 534
Query: 534 MQIVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDI 590
QIV+ L RAEPPLR+EV+EYMLDV HMWS+R+ KANF RI+ +LS A+ +WF I
Sbjct: 535 TQIVSTRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQI 594
Query: 591 CTWRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAI 650
C W+NP+ T L+H+LF+ LV YPELILPTIFLYLFLIG+W YR RPRHPPH+D +LS A
Sbjct: 595 CVWKNPITTVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHAD 654
Query: 651 NAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVER 710
+AH DELDEEFD+FPTSRPSD VRMRY+RLRS+ G++QT+VGDLA+Q ER
Sbjct: 655 SAH----------PDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGER 704
Query: 711 AQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNF 770
Q++L WRD RAT +F++F I AV Y+TPF+VVA IGLY+LRHPR R K+PSVP+NF
Sbjct: 705 FQSLLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNF 764
Query: 771 FKSFPSKSDMLI 782
F+ P+++D ++
Sbjct: 765 FRRLPARTDCML 776
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2504 (886.5 bits), Expect = 3.3e-260, P = 3.3e-260
Identities = 475/785 (60%), Positives = 596/785 (75%)
Query: 2 PKTNPEFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSL 61
P N +F L ETSP + A GDK STYDLVE MHYL V VVKA+ LP DV+GS
Sbjct: 4 PGQNIDFALKETSPKIGAGSVT--GDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSC 61
Query: 62 DPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRV 121
DPYVEVKLGNY+G+TKH EK NP W Q+FAFSKER+Q+S+LEV VKDKD+ DD +GR+
Sbjct: 62 DPYVEVKLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRI 121
Query: 122 SLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAH 181
DL+++P RVPPDSPLAPQWYRLED+ G + KGE+MLAVWMGTQADE+F++AWHSDA
Sbjct: 122 MFDLNEIPKRVPPDSPLAPQWYRLEDRHG-RKVKGELMLAVWMGTQADEAFSDAWHSDAA 180
Query: 182 NISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPS 241
+ + + + RSKVY SPKL+Y+RV V EAQDL+P DK + P+ V+ LGNQ TR S
Sbjct: 181 TVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRIS 240
Query: 242 HVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKL 301
+++NP+WNE+ MFV +EPFE+ +I+ VEDR+ P KDE LGR IP++NV +R + L
Sbjct: 241 QTKTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPL 300
Query: 302 PDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSL 361
+ RWFNL K + EG +K + KF+S+I + LE GYHV DESTH+SSDL+ ++K L
Sbjct: 301 -NSRWFNLEKHIMV--EGEQK-EIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQL 356
Query: 362 RKGSIGTLELGILSAKNLMQMKSKDGK-LTDAYCVAKYGNKWIRTRTILDTLAPRWNEQY 420
K SIG LE+GI+SA LM MKSKDGK TDAYCVAKYG KWIRTRTI+D+ P+WNEQY
Sbjct: 357 WKPSIGLLEVGIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQY 416
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPXXXXTP 480
TW+V+D CTVIT G FDN ++ G KD RIGKVRIRLSTLE DRIYTH YP P
Sbjct: 417 TWEVFDTCTVITFGAFDNGHIPGGS--GKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHP 474
Query: 481 SGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAAG 540
SG+K GE+ LA+RFTC + +NM+ Y +PLLPKMHY+ P+ + +D LRHQAM IV+A
Sbjct: 475 SGIKKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSAR 534
Query: 541 LGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTWRNPV 597
L RAEPPLR+E++EYMLDVD HMWS+R+ KANF RI+ +LS A+ +WF+ IC WRNP+
Sbjct: 535 LNRAEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPI 594
Query: 598 ETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDEL 657
T L+HVLF+ LV YPELILPT+FLYLFLIG+WN+R RPRHPPH+D +LS A H
Sbjct: 595 TTILIHVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVH---- 650
Query: 658 VKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCW 717
DELDEEFD+FPTSR S+ VRMRY+RLRS+GG++QT++GDLA+Q ER ++L W
Sbjct: 651 ------PDELDEEFDTFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSW 704
Query: 718 RDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSK 777
RD RAT +F++F I A+ YVTPF+VVA+L G+Y+LRHPRFR K+PSVP+N F+ P++
Sbjct: 705 RDPRATTLFVLFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPAR 764
Query: 778 SDMLI 782
SD L+
Sbjct: 765 SDSLL 769
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2404 (851.3 bits), Expect = 1.3e-249, P = 1.3e-249
Identities = 456/789 (57%), Positives = 600/789 (76%)
Query: 7 EFLLVETSPPLAARLRYRGG-----DKTA-STYDLVELMHYLCVNVVKARNLPVMDVSGS 60
+F L ETSP L R GG DKTA STYDLVE M++L V VVKAR LP+MD++GS
Sbjct: 240 DFALKETSPHLGGG-RVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGS 298
Query: 61 LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
+DP+VEV++GNYKGIT+H EK Q+P WNQ+FAF+KER+Q+S+LEV VKDKD+ KDD+VG
Sbjct: 299 VDPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGF 358
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
V D++ VPLRVPPDSPLAPQWYRLEDKKG++ KGE+MLAVW+GTQADE+F++AWHSDA
Sbjct: 359 VRFDINDVPLRVPPDSPLAPQWYRLEDKKGEKI-KGELMLAVWIGTQADEAFSDAWHSDA 417
Query: 181 H---NISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRV 237
+ S A RSKVY +P+L+Y+RV V EAQDL+P+DK R PD V+ QLGNQ+
Sbjct: 418 AMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGNQVMK 477
Query: 238 TRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHE 297
TRP R++ VWNE+ +FV +EPFED +++TVEDR+ PGKDEI+GR IP+ V +R +
Sbjct: 478 TRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRAD 537
Query: 298 TTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTS 357
+ RW+NL +P + + + +EKFS +I + CLE GYHV DESTH+SSDL+ S
Sbjct: 538 DHMI-HARWYNLERPVIVDVD--QLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRPS 594
Query: 358 SKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRW 416
++ L + IG LELGIL+A L MK+++G+ T D +CV KYG KW+RTRT++D L P++
Sbjct: 595 ARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKY 654
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPXX 476
NEQYTW+V+DP TV+T+GVFDN + G K + +D +IGK+RIRLSTLET RIYTH YP
Sbjct: 655 NEQYTWEVFDPATVLTVGVFDNGQL-GEKGN-RDVKIGKIRIRLSTLETGRIYTHSYPLL 712
Query: 477 XXTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQI 536
P+G+K GELH+A+RFTC ++ NM+ +Y +PLLPKMHYV+P + D LRHQA+ I
Sbjct: 713 VLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNI 772
Query: 537 VAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFNDICTW 593
VAA LGRAEPPLR+E++E+M D D H+WS+RK KANF R++ + S A+ +WF+DIC+W
Sbjct: 773 VAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSW 832
Query: 594 RNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAH 653
RNP+ T L+HVLFL LV PELILPT+FLY+FLIG+WNYR RPR+PPH++ K+SQA H
Sbjct: 833 RNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVH 892
Query: 654 LDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQA 713
DELDEEFD+FPT+R D VR+RY+RLRSV G++QT++GDLA+Q ER QA
Sbjct: 893 ----------PDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQA 942
Query: 714 ILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773
+L WRD RAT IF+I FI A+ ++TP ++V L G + +RHPRFR ++PSVPVNFF+
Sbjct: 943 LLSWRDPRATAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRR 1002
Query: 774 FPSKSDMLI 782
P+++D ++
Sbjct: 1003 LPARTDSML 1011
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2254 (798.5 bits), Expect = 1.0e-233, P = 1.0e-233
Identities = 426/768 (55%), Positives = 561/768 (73%)
Query: 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQN- 84
G++ TYDLVE M YL V VVKA+ LP ++G DPYVEVKLGNYKG TK ++
Sbjct: 280 GERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTI 339
Query: 85 PVWNQIFAFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWY 143
P WNQ+FAF+KER+QSS+LEV VKDK+ +G+DD +G+V DL+++P RVPP+SPLAPQWY
Sbjct: 340 PEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRVPPNSPLAPQWY 399
Query: 144 RLEDKKGD-QTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLY 202
RLED +G+ + +GEIMLAVWMGTQADE+F EAWH+D+ ++ + + N RSKVY SPKL+
Sbjct: 400 RLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSASVHGEGVFNIRSKVYVSPKLW 459
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF 262
YLRV V EAQD++PSD+ R PD V+ +G Q T +++ NP+W E+ +FV +EPF
Sbjct: 460 YLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLKTSICSIKTTNPLWKEDLVFVVAEPF 519
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSA-EEGAE 321
E+ ++++VEDR+ KDE++G+ +P+ NV ++ + RWFNL K E A
Sbjct: 520 EEQLVISVEDRVHTSKDEVIGKITLPM-NVFEKRLDHRPVHSRWFNLDKYGTGVLEPDAR 578
Query: 322 KNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQ 381
+ + KFSS+I + CLE GYHV DEST + SD + +++ L K +G LE+GIL A L+
Sbjct: 579 RKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLVP 638
Query: 382 MKSKDGK-LTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCY 440
MK KDG+ T+AYCVAKYG KW+RTRTILDTL+PRWNEQYTW+VYDPCTVIT+GVFDN +
Sbjct: 639 MKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNSH 698
Query: 441 VNGSKD---DAKDQRIGKVRIRLSTLETDRIYTHYYPXXXXTPSGLKNNGELHLALRFTC 497
+ ++ D++D RIGKVRIRLSTLE +IYTH +P P GLK G+L +++RFT
Sbjct: 699 LGSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQISVRFTT 758
Query: 498 TAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAAGLGRAEPPLRREVMEYML 557
+ N++ YG PLLPKMHY+ P +D LR+QAM IV+ LGRAEPPLR+EV+EYML
Sbjct: 759 LSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEVVEYML 818
Query: 558 DVDYHMWSLRKCKANFQRIVELLSA---ICRWFNDICTWRNPVETALLHVLFLTLVFYPE 614
DVD H+WS+R+ KANF RI+ LLS + +W D+C WR PV + L++VLF LV YPE
Sbjct: 819 DVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFILVMYPE 878
Query: 615 LILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSF 674
LILPT+FLY+F IG+WN+R RPRHPPH+D KLS A E V DELDEEFD+F
Sbjct: 879 LILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWA------EAVGP----DELDEEFDTF 928
Query: 675 PTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWA 734
PTSR + VR+RY+RLRSV G++QT+VGD+A+Q ER Q++L WRD RAT +F++F +
Sbjct: 929 PTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPRATSLFILFCLAAS 988
Query: 735 VFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSKSDMLI 782
V Y PF+ +A+ GLY LRHP+FRSK+PS+P NFFK PS +D L+
Sbjct: 989 VVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDSLL 1036
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2098 (743.6 bits), Expect = 3.5e-217, P = 3.5e-217
Identities = 418/794 (52%), Positives = 567/794 (71%)
Query: 6 PEFLLVETSPPLAA-RL---RY-RGGDK-TASTYDLVELMHYLCVNVVKARNLPVMDVSG 59
P+F + ETSP L R+ R RG ++ T+ TYDLVE M +L V VVKAR+LP D++G
Sbjct: 228 PDFSVKETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTG 287
Query: 60 SLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVG 119
SLDPYV VK+GN+KG+T H KN +P WNQ+FAF+K+ LQS+ LEV VKDKDI DDFVG
Sbjct: 288 SLDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDDFVG 347
Query: 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSD 179
V DL +V RVPPDSPLAPQWYRLE+K+G++ EIMLAVW GTQADE+F +A SD
Sbjct: 348 IVKFDLREVQSRVPPDSPLAPQWYRLENKRGEKKNY-EIMLAVWSGTQADEAFGDATFSD 406
Query: 180 AH-NISQKNL--ANTRSKVYFSPKLYYLRVFVFEAQD-LVPSDKGRAPDACVRIQLGNQ- 234
+ + N+ AN RSKVY SP+L+YLRV + EAQD ++ SDK R P+ VR+++GNQ
Sbjct: 407 SLVDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGNQM 466
Query: 235 LRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ 294
LR P RS NP W +E FV +EPFED ++++VED P +DE +G+ +I + ++ +
Sbjct: 467 LRTKFPQ--RSNNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIEK 524
Query: 295 RHETTKLPDPRWFNLHKPSLSAEEGAEKNKE-KFSSKILISFCLEAGYHVFDESTHFSSD 353
R + D RW +L + S+S +K K+ KF++++ L+ GYHVFDES + SSD
Sbjct: 525 RIDDKPFHD-RWVHL-EDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSD 582
Query: 354 LQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTL 412
L+ SS+ L K +IG LELGIL+A MK+++GK T D Y VAKYG+KW+R+RT+++++
Sbjct: 583 LRPSSRKLWKPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSM 642
Query: 413 APRWNEQYTWDVYDPCTVITIGVFDNC-YVNGSKDDAKDQRIGKVRIRLSTLETDRIYTH 471
P++NEQYTW+V+DP TV+TI VFDN + G + +DQ IGKVRIRLSTL+T R+YTH
Sbjct: 643 NPKYNEQYTWEVFDPATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTLQTGRVYTH 702
Query: 472 YYPXXXXTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRH 531
YP P+GLK GELHLA+RFTCT+ +M+ KY +PLLPKMHY+ P+ + L+
Sbjct: 703 AYPLLVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKM 762
Query: 532 QAMQIVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS---AICRWFN 588
QA+ I+ LGR+EPPLRREV++Y+ D ++S+R+ KANF R + S ++ +W
Sbjct: 763 QAINIIIVRLGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWME 822
Query: 589 DICTWRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQ 648
+CTW+ PV TAL+HVL+ LV +PE+ILPT+FLY+ +IGMWNYR +PR PPH+DAKLS
Sbjct: 823 QVCTWKTPVTTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSY 882
Query: 649 AINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQV 708
A N + SDELDEEFD+FPT R D V+MRY+RLRSV G++Q++ GD+A+Q
Sbjct: 883 ADNVN----------SDELDEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQG 932
Query: 709 ERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPV 768
ER QA+L WRD RAT IF+ F FI A+ Y+TPF++VA+L G Y +RHP+ R ++PS PV
Sbjct: 933 ERVQALLSWRDPRATAIFVTFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPV 992
Query: 769 NFFKSFPSKSDMLI 782
NFF+ P+ +D ++
Sbjct: 993 NFFRRLPAMTDSML 1006
|
|
| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2064 (731.6 bits), Expect = 1.4e-213, P = 1.4e-213
Identities = 406/769 (52%), Positives = 539/769 (70%)
Query: 25 GGDKTA--STYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKN 82
GG K A S +DLVE M +L + +VKARNLP MD++GSLDPY+EVKLGNY G TKH EKN
Sbjct: 232 GGGKRARSSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPYIEVKLGNYTGKTKHFEKN 291
Query: 83 QNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQW 142
QNPVWN++FAFSK QS++LEV V DKD+ KDDFVG + DL+Q+P RV PDSPLAP+W
Sbjct: 292 QNPVWNEVFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFDLNQIPTRVAPDSPLAPEW 351
Query: 143 YRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLY 202
YR+ ++KG GEIMLAVW GTQADE+F++A +SDA N K+ + RSKVY SP+L+
Sbjct: 352 YRVNNEKG-----GEIMLAVWFGTQADEAFSDATYSDALNAVNKS--SLRSKVYHSPRLW 404
Query: 203 YLRVFVFEAQDLV-PSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEP 261
YLRV V EAQDLV D+ R P+ V+I+L NQ+ T+PSH S+NP WNEE VA+EP
Sbjct: 405 YLRVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTKPSH--SLNPRWNEEFTLVAAEP 462
Query: 262 FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
FEDLII ++EDR+ P ++E LG IP+ + +R + + RWF SL E
Sbjct: 463 FEDLII-SIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVPNRWF-----SLKTEN--- 513
Query: 322 KNKEKFSS-KILISFCLEAGYHVFDESTHFSSDLQTSSKSL---RKGSIGTLELGILSAK 377
+ + +F++ ++ ++ CLE GYHV DEST++SSD + S K L ++ S G LELGIL +
Sbjct: 514 QRRVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSHKQPSFGVLELGILRIE 573
Query: 378 NLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFD 437
L + + DAYCVAKYG KW+RTRT+ + L PR+NEQYTW+VY+P TVITIGVFD
Sbjct: 574 GLNLSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYTWEVYEPATVITIGVFD 633
Query: 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPXXXXTPSGLKNNGELHLALRFTC 497
N +N + D +IGK+R+R+STLE RIY+H YP PSGLK GELHLA+RF+C
Sbjct: 634 NNQINSGNGNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVLRPSGLKKMGELHLAIRFSC 693
Query: 498 TAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAAGLGRAEPPLRREVMEYML 557
++ M+ +Y +PLLPKMHY +P+ + + LR A+ +VAA L RAEPPLR+EV+EY+
Sbjct: 694 SSMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARLSRAEPPLRKEVVEYIS 753
Query: 558 DVDYHMWSLRKCKANFQRIVELLSAIC---RWFNDICTWRNPVETALLHVLFLTLVFYPE 614
D + H+WS+RK +AN R+ + S + WF DIC W+ PVET +H++FL LV PE
Sbjct: 754 DSNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVETTAIHIIFLVLVCSPE 813
Query: 615 LILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSF 674
+ILP + L LF++G+WNYRLRPR PPH+D +LS A N H +EL+EEFD+F
Sbjct: 814 MILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIH----------PEELNEEFDTF 863
Query: 675 P-TSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIW 733
P +S+ V+MRYERLRS+ + QT+VGD+A Q ER QA+L WRD RAT IF++ +
Sbjct: 864 PFSSQDPGIVKMRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFMVLCLVS 923
Query: 734 AVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSKSDMLI 782
V YV PF+V +L GLY++R PRFR K P P+NFF+ P+K+D ++
Sbjct: 924 TVVLYVVPFKVFVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2027 (718.6 bits), Expect = 1.2e-209, P = 1.2e-209
Identities = 413/801 (51%), Positives = 553/801 (69%)
Query: 7 EFLLVETSPPLAARLRYRGG-----DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSL 61
EF L ET P L GG DKT+STYDLVE M YL VN+VKA++L V+ G +
Sbjct: 241 EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSVL---GEV 297
Query: 62 DPYVEVKLGNYKGITKHLEKNQ-NPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
EVKLGNY+G+TK + N NP WNQ+F FSKER+QSS++E+ VK+ + KD++ GR
Sbjct: 298 --VSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGN--KDEYTGR 353
Query: 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDA 180
V DLS++P RVPPDSPLAPQWY++E++ G + GE+M++VW GTQADE+FAEAWHS A
Sbjct: 354 VLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGN-GELMVSVWFGTQADEAFAEAWHSKA 412
Query: 181 HNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKG----RAPDACVRIQLGNQ-L 235
N+ + L++ +SKVY SPKL+YLR+ V EAQD+ DKG R P+ ++Q+G+Q L
Sbjct: 413 GNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQIL 472
Query: 236 RVTRPSHV--RSV-NPVWNEEHMFVASEPFEDLIIVTVEDRIRPG-----KDEILGRELI 287
R S + +S NP WNE+ MFV +EPFED + V VEDR+ G D +GR I
Sbjct: 473 RTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQI 532
Query: 288 PVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDES 347
P+ V +R T L RWF+L + G N +F S+I + L+ GYHV DE+
Sbjct: 533 PISAVERRTGDT-LVGSRWFSL-------DNG--NNNNRFGSRIHLRLSLDGGYHVLDEA 582
Query: 348 THFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGK---LTDAYCVAKYGNKWIR 404
T ++SD++ ++K L K +G LE+GILSA LM MK +DGK + D+YCVAKYG KW+R
Sbjct: 583 TMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVR 642
Query: 405 TRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE 464
TRT++D+L P+WNEQYTW+VYDPCTV+T+GVFDN VN ++++D RIGKVRIRLSTLE
Sbjct: 643 TRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVN-ENNNSRDVRIGKVRIRLSTLE 701
Query: 465 TDRIYTHYYPXXXXTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFI 524
T R+YTH YP PSG+K GELHLA+R +C VNM+ Y PLLPKMHY QP+
Sbjct: 702 TGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVH 761
Query: 525 LIDRLRHQAMQIVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLS--- 581
+++RLR+Q + VAA L RAEPPL REV+EYMLD D+H+WS+R+ KANF R+V ++S
Sbjct: 762 MLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLV 821
Query: 582 AICRWFNDICTWRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPH 641
A+ + + +W PV + + + FL +V +PEL+LP + LY +G+W +R R R+PPH
Sbjct: 822 AVAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPH 881
Query: 642 VDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMV 701
+DA++S A E V F DELDEEFD+FPTSR D VRMRY+R+RS+ G++QT+V
Sbjct: 882 MDARISHA------ETV--FP--DELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVV 931
Query: 702 GDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRS 761
GD+ASQ ER QA+L WRD RATF+FL+F + AV Y P ++ + GLY LR PRFR
Sbjct: 932 GDMASQGERVQALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRR 991
Query: 762 KMPSVPVNFFKSFPSKSDMLI 782
K+PS ++FF+ PS++D L+
Sbjct: 992 KLPSRGLSFFRRLPSRADSLL 1012
|
|
| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1895 (672.1 bits), Expect = 1.1e-195, P = 1.1e-195
Identities = 380/788 (48%), Positives = 536/788 (68%)
Query: 7 EFLLVETSPPLAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVE 66
+F L ETSP + GG+K S++DLVE MH+L +V+AR LPV D +V
Sbjct: 14 DFSLKETSPNIGNG-GVNGGEKLTSSFDLVEAMHFLYARIVRARALPVND------SFVA 66
Query: 67 VKLGNYKGITKH-LEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-GKDDFVGRVSLD 124
VK+G+YKG TK L N NP +++ FAF+K RLQ +LEV V+++D +DD VG+ D
Sbjct: 67 VKIGSYKGRTKQILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFD 126
Query: 125 LSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNIS 184
++++P RVPPDSPLAPQWYRLED+ G + GEIM++VW+GTQADE F+EAWHSD+ +++
Sbjct: 127 VAEIPTRVPPDSPLAPQWYRLEDRNGVKIG-GEIMVSVWIGTQADEVFSEAWHSDSASVT 185
Query: 185 QKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRA-PDACVRIQLGNQLRVTRPSHV 243
+N+ NTRSKVY SP+L+YLRV V EAQDLV R P+ ++ LGN + +R S
Sbjct: 186 GENVVNTRSKVYLSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQT 245
Query: 244 RSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD 303
+SV+PVWNE+ MFVA EPF+D +I++VED++ P ++E LGR I + V +R +P
Sbjct: 246 KSVSPVWNEDMMFVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPS 304
Query: 304 PRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRK 363
W+N+ E G + +F+ +I + L+ GYHV DES +SSD + S+K L
Sbjct: 305 -LWYNVEH---IGETGEGR---RFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWT 357
Query: 364 GSIGTLELGILSAKNLMQMKSKDGK-LTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTW 422
IG LELG+L+A LM MKS+ G+ TDAYCVAKYG KW+RTRTI+DT P+WNEQYTW
Sbjct: 358 PPIGVLELGVLNATGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTW 417
Query: 423 DVYDPCTVITIGVFDNCYVNGSKDDAK---DQRIGKVRIRLSTLETDRIYTHYYPXXXXT 479
+VYDP TVITIGVFDN + G+ ++ + D RIGK+RIRLSTL T +IYTH YP
Sbjct: 418 EVYDPYTVITIGVFDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLK 477
Query: 480 PSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAA 539
P G+K GE+ LA+RFT T+ ++M+ KY PLLP+MHY+ P+ +D LRHQA I+
Sbjct: 478 PDGVKKMGEIQLAVRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCI 537
Query: 540 GLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANFQRIVELLSA---ICRWFNDICTWRNP 596
LGR EP L R+V+EYMLDV ++WSLR+ +ANF+R+V +WF++IC W++P
Sbjct: 538 NLGRNEPALGRDVVEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSP 597
Query: 597 VETALLHVLFLTLVFYPELILPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDE 656
V + L+H++ L +VF P+ + ++ LY F+ G++ + LRPRHPPH+D KLS+A +A
Sbjct: 598 VTSVLVHIVCLFVVFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSA---- 653
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILC 716
DELDEEFD FP+S+ D ++ RY+RLR + G++ ++GDLA+Q ER +++L
Sbjct: 654 ------LPDELDEEFDVFPSSKSGDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLS 707
Query: 717 WRDLRATFIFLIFSFI-WAVFSYVTPFEVVAVLIGLYMLRHPRFRS-KMPSVPVNFFKSF 774
WRD RAT +FL F F+ V +V+ +++ + Y++RHPR R +PS+P NFF+
Sbjct: 708 WRDPRATSLFLTFCFVSCGVICFVS-MKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRL 766
Query: 775 PSKSDMLI 782
PS++D ++
Sbjct: 767 PSRADSIL 774
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00031831001 | SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (979 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 782 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 2e-86 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 4e-65 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 7e-63 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-59 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 6e-25 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 8e-24 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-23 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-20 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 3e-18 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 8e-18 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-17 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-17 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-16 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-16 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-16 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-16 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 1e-15 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 6e-15 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-14 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 1e-14 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-14 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 5e-14 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-14 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 6e-14 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 8e-14 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-13 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 6e-13 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 1e-12 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 2e-12 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 5e-12 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 5e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 6e-12 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 1e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 1e-11 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-11 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 4e-11 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-10 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-10 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 3e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 6e-10 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 9e-10 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-09 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 3e-09 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-09 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 3e-09 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 4e-09 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 5e-09 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 1e-08 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-08 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-08 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-08 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-08 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-08 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 4e-08 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-08 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 5e-08 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 6e-08 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-07 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 2e-07 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 2e-07 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-07 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-07 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 3e-07 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 4e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 5e-07 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 5e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 6e-07 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 7e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 7e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 1e-06 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-06 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 2e-06 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-06 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-06 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 3e-06 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 4e-06 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 4e-06 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 6e-06 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 7e-06 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 7e-06 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-05 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 1e-05 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 1e-05 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-05 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-05 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 3e-05 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-05 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 5e-05 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 5e-05 | |
| cd08394 | 127 | cd08394, C2A_Munc13, C2 domain first repeat in Mun | 6e-05 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 6e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 8e-05 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-04 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 1e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-04 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 3e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 3e-04 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 3e-04 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 3e-04 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 4e-04 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 5e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 6e-04 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 7e-04 | |
| PLN02952 | 599 | PLN02952, PLN02952, phosphoinositide phospholipase | 7e-04 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 8e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 0.001 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 0.001 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.001 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 0.001 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.001 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.001 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 0.001 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 0.001 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 0.001 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 0.001 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.002 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.002 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 0.002 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.003 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 0.003 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 0.003 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.004 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 2e-86
Identities = 106/165 (64%), Positives = 129/165 (78%), Gaps = 10/165 (6%)
Query: 617 LPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPT 676
LPTIFLYLF+IG+WNYR RPRHPPH+D +LS A AH DEL DEEFD+FPT
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDEL----------DEEFDTFPT 50
Query: 677 SRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVF 736
SRP D VRMRY+RLRSV G++QT+VGD+A+Q ER QA+L WRD RAT IF++F + AV
Sbjct: 51 SRPPDVVRMRYDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVV 110
Query: 737 SYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSKSDML 781
YV PF+VVA+L G Y LRHPRFRS+MPSVP+NFF+ PS++D +
Sbjct: 111 LYVVPFKVVALLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSM 155
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 4e-65
Identities = 85/153 (55%), Positives = 111/153 (72%), Gaps = 4/153 (2%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF 262
YLRV V EAQDLVPSDK R P+ V+ QLGNQ+ TRPS R+ NP WNEE MFVA+EPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEK 322
ED +I++VEDR+ P KDE LGR +IP+ ++ +R + +P RWF+L +P + E+
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVP-SRWFSLERPGGAMEQKK-- 117
Query: 323 NKEKFSSKILISFCLEAGYHVFDESTHFSSDLQ 355
K KF+S+I + CL+ GYHV DESTH+SSDL+
Sbjct: 118 -KRKFASRIHLRLCLDGGYHVLDESTHYSSDLR 149
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 7e-63
Identities = 87/126 (69%), Positives = 95/126 (75%), Gaps = 5/126 (3%)
Query: 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQS 100
YL V VVKAR LP S DP VEVKLGNYKG TK +E+ NP WNQ+FAFSK+RLQ
Sbjct: 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 101 SLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160
S LEV+V DKD KDDF+G V DLS+VP RVPPDSPLAPQWYRLEDKKG GE+ML
Sbjct: 57 STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELML 115
Query: 161 AVWMGT 166
AVW GT
Sbjct: 116 AVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 2e-59
Identities = 79/125 (63%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query: 369 LELGILSAKNLMQMKSKDGK-LTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP 427
LE+GIL A+ L +++KDG+ TDAYCVAKYG KW+RTRT+ D+ PRWNEQYTW VYDP
Sbjct: 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP 61
Query: 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNG 487
CTV+T+GVFDN + + D IGKVRIRLSTLE DR+Y H YPLL L PSG+K G
Sbjct: 62 CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMG 121
Query: 488 ELHLA 492
EL A
Sbjct: 122 ELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 6e-25
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAFSKER 97
L V ++ ARNLP D G DPYV+V L TK ++ NPVWN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 98 LQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPD 135
+ + LE+ V DKD G+DDF+G+V++ LS + L +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 8e-24
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAFSKERL 98
L V V+ A+NLP D++G DPYV+V LG K TK ++ NPVWN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 99 QSSLLEVTVKDKD-IGKDDFVGRVS 122
+ + L + V D D GKDDF+G V+
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-23
Identities = 44/106 (41%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQS 100
L V V++ARNLP D++G DPYV+V LG K TK ++ NPVWN+ F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 101 SLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
L V V DKD KDDF+G V + LS+ + W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 4e-20
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQS 100
+L V V++A L D+ G DP+ ++L N + T + K NP WN+IF F + +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH- 60
Query: 101 SLLEVTVKDKDIGKD-DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIM 159
+LEVTV D+D K +F+G+V++ L + +WY L+DKK KG I+
Sbjct: 61 DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSIL 113
Query: 160 L 160
L
Sbjct: 114 L 114
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-18
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFS---KERL 98
L V VV A++L D GS YVE+ K T+ K+ NPVWN+ F+ RL
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 99 QSSLLEVTVKDK--DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKG 156
+ +LEV V + + F+GRV + + P S Q Y LE + +G
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISGTS----FVPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 157 EIMLAVWM 164
EI L V++
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-18
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLL 103
+ +V+ +NLP MD +G DPYV+ +LGN K +K K NP W + F QS +L
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQIL 63
Query: 104 EVTVKDKDIG-KDDFVGRVSLDLSQVPL 130
E+ V DKD G KD+F+GR +DLS +P
Sbjct: 64 EIEVWDKDTGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-17
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWNEEHMFVASEP 261
LRV V A++L P D D V++ LG Q + T+ + V ++NPVWNE F + P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 262 FEDLIIVTVEDRIRPGKDEILGR 284
+ + V D R GKD+ +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-- 94
L V V++AR+LP D +PYV+V L K TK ++K NP WNQ F +S
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 95 -KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
+E L+ LEVTV D D G++DF+G V +DL+ L D P WY L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL----DD--EPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-16
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWNEEHMFVASE 260
L V + A++L P DKG D V++ L + + + V ++NPVWNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 261 PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKL 301
P + + V D+ R G+D+ +G+ IP+ ++ KL
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-16
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGN-QLRVTRPSHVRSVNPVWNEEHMFVASEPF 262
LRV V EA++L D D V++ LG Q T+ ++NPVWNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPE 59
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309
D + V V D+ R KD+ LG IP+ + + W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 44 VNVVKARNLPVMD------VSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER 97
++V++A++L D V G DPYV V++G +K +++N NP WN+++ +
Sbjct: 5 IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE 64
Query: 98 LQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147
+ LE+ + D+D KDDF+GR+S+DL V +W LED
Sbjct: 65 VPGQELEIELFDEDPDKDDFLGRLSIDLGSV-----EKKGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-16
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 23/123 (18%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK--------NQNPVWNQIFAF 93
+ VN++KARNL MD++G+ DPYV+V L YK K +EK NPV+N+ F F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWL-MYKD--KRVEKKKTVIKKRTLNPVFNESFIF 73
Query: 94 S--KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP--------PDSPLAPQW 142
+ ERL+ + L +TV DKD + ++D +G++ L L + P P+A QW
Sbjct: 74 NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QW 132
Query: 143 YRL 145
+RL
Sbjct: 133 HRL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-15
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEV-------KLGNYKGITKHLEKNQNPVWNQIFAF- 93
L V V+KARNLP D G DPYV+V KL K T + NPV+N+ F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKK--TSVKKGTLNPVFNEAFSFD 73
Query: 94 -SKERLQSSLLEVTVKDKD-IGKDDFVGRVSL 123
E+L+ L +TV DKD +G+++ +G+V L
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-15
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-------GNYKGITKHLEKNQNPVWNQIFAF- 93
L V V K RNLP D S DPYV + L K T + N NPV+++ F F
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRK--TSVKKDNLNPVFDETFEFP 75
Query: 94 -SKERLQSSLLEVTVKDK---DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
S E L+ L+V VK+ + +G+V +DLS + L S QWY L
Sbjct: 76 VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL-----SKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERL 98
L +++ + RNL D G+ DPYV+ K G YK T + KN NPVW++ F E +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59
Query: 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE 157
+ L + V D D G DDF+G +DLS + L P + L +LED D+ G
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDEDL-GY 112
Query: 158 IMLAV 162
I L V
Sbjct: 113 ISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-14
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-------GNYKGITKHLEKNQNPVWNQIFAFS 94
L V ++ ARNL +D +GS DP+V+V+L T+ +K P++++ F F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 95 ----KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQ 141
+ ++ +LL TVKD D +G +DF G L L+ +P S
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-14
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI---RTRTILDTLAPRWNEQYTWDVY 425
L + ++SAKNL +D Y G + +T+ + +TL P WNE +T++V
Sbjct: 1 LRVTVISAKNLPPKDLN--GKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVT 58
Query: 426 DP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVR 457
P + I V+D KD IG+V
Sbjct: 59 LPELAELRIEVYDYDRFG------KDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 5e-14
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 44 VNVVKARNLPVMD-VSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQ---IFAFSKERLQ 99
V VV AR+LPVMD S D +VEVK G+ T ++K+ NPVWN F E LQ
Sbjct: 3 VRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQ 62
Query: 100 SSLLEVTVKDKDI-GKDDFVGRVSLDLS 126
L++ V D D +D +G+V +DL+
Sbjct: 63 DEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-14
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI-RTRTILDTLAPRWNEQYTWDVYDP 427
L + ++ A+NL +D Y G K +T+ + +TL P WNE + + V DP
Sbjct: 1 LRVTVIEARNLPAKD--LNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 428 -CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI-YTHYYPL 475
+T+ V+D +KD +G+V I LS L + PL
Sbjct: 59 ESDTLTVEVWD------KDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 6e-14
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAF---SK 95
L + ++KA LP D SG+ DP+V++ L +K TK KN NP WN+ F F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPP 134
E+LQ +L + V D D ++D +G VSL L++V L
Sbjct: 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQ 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-14
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 42 LCVNVVKARNLPVMDVSGS--LDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQ 99
L V+VV+A++L D SG DPY + +G + T+ + NP WN F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 100 SSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK--KGDQTTKG 156
+ LL++ + DKD D++G + L +V + + +W L+ G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLKSTRPGKTSVVSG 120
Query: 157 EIML 160
EI L
Sbjct: 121 EIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L V VV+ NL V D + S DPYV + LGN K T+ ++KN NPVWN+ S +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MA 61
Query: 102 LLEVTVKDKDI-GKDDFVGRVSLDL 125
L++ V DKD KDD +G +DL
Sbjct: 62 PLKLEVFDKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-13
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 32 TYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNYKG---ITKHLEKNQNPV 86
YD L +++A+ L MD +G DPYV++ L G K TK + K +NP
Sbjct: 9 LYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPE 66
Query: 87 WNQIFAF---SKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQV 128
+N+ + ++E +Q L + V D+D +DF+G + L ++
Sbjct: 67 FNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKL 111
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 6e-13
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFSKERL 98
L V V++A N+ D+ + D YVE+ L + K TK ++ + NPVWN+ F F +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 99 QSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPL 130
++LE+TV D+D DD +G V D+S++ L
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDVSKLKL 93
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-12
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYK-GITKHLEKNQ-NPVWNQIFAFSKERLQSS 101
V VV+ARNL D +G DPY+++KLG K + N NPV+ ++F +S
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63
Query: 102 LLEVTVKDKD-IGKDDFVGRVSLDL 125
+L+++V D D +G DD +G +DL
Sbjct: 64 ILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 13/115 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V +A+NL MD +G DPYV++KL K TK ++K NPVWN+ F F K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
+ L + V D D ++DF+G +S +S++ +++P D WY+L +++
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL-IKMPVDG-----WYKLLNQE 123
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-12
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKL-------TDAYCVAKYGNKWIRTRTILDTLAPRWNEQ 419
G L + ++ A++L+ +KD + +D Y + + G + +++ I + L P+WNE
Sbjct: 1 GVLRIHVIEAQDLV---AKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 420 YTWDVYD-PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
Y V + P + I +FD +D KD +G++ I L ++E + PL
Sbjct: 58 YEAVVDEVPGQELEIELFD-------EDPDKDDFLGRLSIDLGSVEKKGFIDEWLPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-12
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFS--KE 96
L V +++A +LP MD+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
L + L +V D D K D +G V + L V L + +W LE
Sbjct: 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL-----GHVTEEWRDLE 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 6e-12
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN---KWIRTRTILDTLAPRWNEQYTWDV 424
TL + I+SA+NL G +D Y + +T+ + +TL P WNE + ++V
Sbjct: 1 TLTVKIISARNLPPKDK--GGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV 58
Query: 425 YDPCT-VITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET 465
P + I V+D +D IG+V I LS L
Sbjct: 59 PPPELAELEIEVYDKDRFG------RDDFIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-11
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERL 98
L V+V+ A NLP D +G DP+V+ L +K TK ++K NPVWN+ F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSR 58
Query: 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQV 128
++L+V V D D G KDD +G +DLS +
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGITK---HLEK-NQNPVWNQIFAFS 94
+ L V V+KAR+LP MDVSG DPYV+V L K I+K H++K NPV+N+ F F
Sbjct: 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 95 --KERLQSSLLEVTVKDKDIG-KDDFVGRVSL 123
E L+ +E V D D K++ +GR+ L
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGRLVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 23/124 (18%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQ--------NPVWNQIFAF 93
L V +++A+NL MDV G DPYV++ L + K L+K + NP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHL--MQN-GKRLKKKKTTIKKRTLNPYYNESFSF 73
Query: 94 --SKERLQSSLLEVTVKDKD-IGKDDFVGRVSL--DLSQVPLR------VPPDSPLAPQW 142
E++Q L VTV D D IGK+D +G+V L + + LR P P+A QW
Sbjct: 74 EVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIA-QW 132
Query: 143 YRLE 146
+ L+
Sbjct: 133 HTLQ 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L +V++AR+L D +G+ DP+V V T ++K+ P WN++F F S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 102 LLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE-DKKGDQTTKGEI 158
L V V D D + K+DF+G+V + + + W+RL D + ++ + G +
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRLLPDPRAEEESGGNL 115
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 35 LVELMH-----YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQ------ 83
LV LM+ L V +++ NL MD +G DP+V++ L G K K Q
Sbjct: 3 LVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAG-KKSKHKTQVKKKTL 61
Query: 84 NPVWNQIFAF--SKERLQSSLLEVTVKDKDIGK-DDFVGRVSLDLS 126
NP +N+ F + L LE+TV DKDIGK +D++G + L ++
Sbjct: 62 NPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 17 LAARLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GN 71
L L+Y + + L V V +A+NLP + G+ D +V+ L
Sbjct: 4 LKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKK 63
Query: 72 YKGITKHLEKNQNPVWNQIF---AFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQ 127
K T ++K+ NPVWN F S E L + LE+TV D D + +DF+G V L L
Sbjct: 64 SKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGT 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI--RTRTILDTLAPRWNEQYTWD 423
IG L + I SA+ L G + D Y N+ RT+ DT P WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTV-DPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL 59
Query: 424 VYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTH-YYPLLLLTPSG 482
V + + V+D D KD+ IG LS+L + + LL
Sbjct: 60 VNSLTEPLNLTVYDF------NDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL----RN 109
Query: 483 LKNNGELHLALRF 495
K GEL+ LRF
Sbjct: 110 GKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-10
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVR--SVNPVWNEEHMF-VA 258
L V V +A++L PSD D V++ L G + + + V+ ++NPV+NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 259 SEPFEDL-IIVTVEDRIRPGKDEILGR 284
+E E++ +++TV D+ G++E++G+
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQ 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-10
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQ-----IFAFSKERL 98
V V++AR L SG+ D YV ++LG K T EK +PVW + +
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 99 QSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQT-TKG 156
+ L++TV ++ +G D F+G+VS+ L+ L +W++LE K G +G
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLND--LDEDKGRRRT-RWFKLESKPGKDDKERG 119
Query: 157 EIMLAV 162
EI + +
Sbjct: 120 EIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L V +V+ R+L + +G DPY EV +G+ + TK + NP WN F + L+
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 102 LLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
+L +TV D+D DDF+GR + ++ +
Sbjct: 77 VLCITVFDRDFFSPDDFLGRTEIRVADI 104
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITK-HLEKNQNPVWNQIFAF-SKERL 98
YL V V++A++L D + + +V+ +LGN T+ +N NP WN+ F + E
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 99 QSSLLEVTVKD-KDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE 157
+ L+ ++V+D KD+ +GR + L+ + RV D P+ +W+ LE G K +
Sbjct: 61 EDHLI-LSVEDRVGPNKDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKK 118
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
+ + VV A+ L D +G+ DPYV V++G K TK + +N NPVWN+ F F S
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN-SSD 61
Query: 102 LLEVTVKDKDIGKDDFVGRV-------SLD-LSQVPLRVPPDSPLAPQWYRLEDKKGDQT 153
++V V D+D DD R+ S D L Q + V S WY LE +
Sbjct: 62 RIKVRVWDED---DDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSA 118
Query: 154 TKGEIMLAV 162
G I L +
Sbjct: 119 VSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQ 99
L V V+KARNLP DPY +++G TK + Q+P W++ F +
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK 61
Query: 100 SSLLEVTVKDKDIGKDDFVGRVSLDLSQV 128
+L+V V D D K D +G +DLS
Sbjct: 62 KPILKVAVFDDDKRKPDLIGDTEVDLSPA 90
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-09
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 49 ARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAF-------SKERLQSS 101
AR+L D SG DP+ V N T+ +++ +P W+Q F S E + +
Sbjct: 10 ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69
Query: 102 --LLEVTVKDKDI-GKDDFVGR------VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ 152
L+ V + D+D GKD+F+GR V LDL D P QW+ + KG Q
Sbjct: 70 PPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLE-------EDFPPKLQWFPI--YKGGQ 120
Query: 153 TTKGEIMLAV 162
+ GE++ A
Sbjct: 121 SA-GELLAAF 129
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-TKHLEKNQNPVWNQIFAFSKERLQS 100
L + +V+ +NLP D++GS DPY VK+ N I T + K NP W + + L
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPP 58
Query: 101 SLLEVT--VKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQ----WYRLEDKKGDQT 153
V+ V D+D + +DD +G+VSL + P+ W L + D+
Sbjct: 59 GFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAH--------PRGIDGWMNLTEVDPDEE 110
Query: 154 TKGEIMLAVWM 164
+GEI L + +
Sbjct: 111 VQGEIHLELSV 121
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 40 HYLCVNVVKARNLPVMDV-SGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAF-- 93
L VN+++ R+LP MD SG+ DPYV+++L +K T+ L K +NPV+++ F F
Sbjct: 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYG 75
Query: 94 -SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL 130
+LQ L V D +DD +G V L+ L
Sbjct: 76 IPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 367 GTLELGILSAKNLMQMKSKD--GKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDV 424
G L++ ++ A L + D GK +D +CV + N ++T TI TL P WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIGGK-SDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI 56
Query: 425 YDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
D V+ + V+D KD + +GKV I L +++ +Y L
Sbjct: 57 KDIHDVLEVTVYDE-----DKDKKPE-FLGKVAIPLLSIKNGE--RKWYAL 99
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVY 425
+G L++ ++ NL +D +D Y V GN+ ++TR I L P WNE+ T V
Sbjct: 1 LGLLKVRVVRGTNLA---VRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP 57
Query: 426 DPCTVITIGVFD 437
+P + + VFD
Sbjct: 58 NPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-08
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 42 LCVNVVKARNLPVMD-VSGSLDPYVEVKLGNYKGI--TKHLEKNQNPVWNQIFAFSKERL 98
L V + AR L D + G++DPYV + N + + TK + NPVWN+ +K L
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNE----TKYIL 59
Query: 99 QSSL---LEVTVKDK-DIGKDDFVGRVSLDLSQ 127
+SL L +TV D D KD +G DLS
Sbjct: 60 VNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 205 RVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMF-----VAS 259
+V V +A+ L+ K DA V IQLG + T ++ +PVW EE F ++
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSG 60
Query: 260 EPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH-KPSLSAEE 318
+ +TV R G D+ LG+ IP+ ++ E RWF L KP +E
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDL---DEDKGRRRTRWFKLESKPGKDDKE 117
Query: 319 GAE 321
E
Sbjct: 118 RGE 120
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 49 ARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAF--SKERLQSSLLEVT 106
A+NLP+ + PYVE+ +G +K E+ NPVW + F F Q LE+
Sbjct: 9 AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQE--LEIE 66
Query: 107 VKDKDIGKDDFVGRVSLDLSQV 128
VKD GK +G ++L LS++
Sbjct: 67 VKDDKTGKS--LGSLTLPLSEL 86
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 20 RLRYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIT 76
++ Y ++VE YL + + NLP D +G DP+V++ L YK T
Sbjct: 1020 QVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYK--T 1077
Query: 77 KHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVP 133
K ++K NPVWN+ F +L + V D D G K+D +G +DLS++
Sbjct: 1078 KVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 374 LSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVY-DPCTVIT 432
+ KNL M D L+D Y + GN+ +++ TL P+W EQ+ ++ D ++
Sbjct: 7 VEGKNLPPMD--DNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64
Query: 433 IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL--------LLLTPSG 482
I V+D G KD+ IG+ I LS L ++ ++ L LLLT +G
Sbjct: 65 IEVWD--KDTGKKDE----FIGRCEIDLSALPREQTHSLELELEDGEGSLLLLLTLTG 116
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 204 LRVFVFEAQDLVPSDKGRA--PDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEP 261
LRV V EA+DL D+ D + +G Q T+ ++NP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSA 61
Query: 262 FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
L+ + + D+ R + LG I + V + +W L S G
Sbjct: 62 QNQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLK----STRPGKT 115
Query: 322 KNKEKFSSKILISF 335
S +I + F
Sbjct: 116 SVV---SGEIHLQF 126
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGITKHLEKNQNPVWNQIFA---F 93
L V V+ A+NLP++D DPYV+ L K TK + K +NP +N++
Sbjct: 15 LFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGL 73
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
E LQ +L+V+V D + +++F+G V + L ++ L + +WY L
Sbjct: 74 PVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPLG 122
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 26/108 (24%)
Query: 42 LCVNVVKARNLPVMDVS--------------GSLDPYVEVKLGNYKGITKHLEKNQNPVW 87
+ +A +LP MD +DPYVEV K T + + NP W
Sbjct: 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEW 61
Query: 88 NQIFAFSK------ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
N+ F + ER++ + ++D D +G DD +G +DLS++
Sbjct: 62 NEQIVFPEMFPPLCERIK-----IQIRDWDRVGNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 210 EAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEE---HMFV-ASEPFEDL 265
E ++L P D D V+ +LGN+ ++ +++NP W E+ H+F S+ E
Sbjct: 8 EGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVC-SKTLNPQWLEQFDLHLFDDQSQILE-- 64
Query: 266 IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKL 301
+ V D+ KDE +GR I + +P R +T L
Sbjct: 65 --IEVWDKDTGKKDEFIGRCEIDLSALP-REQTHSL 97
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 28/125 (22%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLE---KNQNPVWNQIFAF---- 93
L V V++ R+L + +G+ DP+ V L K TK + K NP +++ F F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 94 -----------SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQ 141
+E L+ S L V + + DDF+G V ++PL+ + Q
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEV-----RIPLQG-LQQAGSHQ 113
Query: 142 -WYRL 145
WY L
Sbjct: 114 AWYFL 118
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 42 LCVNVVKARNLPVM--DVSGSLDPYVEVKL------GNYKGITKHLEKN-QNPVWNQIFA 92
L + ++ + LP D +DPYVEV++ + K TK ++ N NPVWN+ F
Sbjct: 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63
Query: 93 FSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLS-------QVPLR 131
F + + L V D+D G DDF+G+ L L VPL
Sbjct: 64 FDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRHVPLL 109
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 46 VVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAF--SKERLQS 100
VV +NLP + G D +V ++G+ T+ LE NPVWN+ F + +
Sbjct: 2 VVSLKNLP--GLKGKGDRIAKV---TFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 101 SLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
LE+ VKD + +G++ +G ++ L +
Sbjct: 57 ESLEIVVKDYEKVGRNRLIGSATVSLQDL 85
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAF----SKERLQ 99
V V++AR L G++DP V+V++G K T + P +N+ F F S + L
Sbjct: 8 VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 100 SSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
+++++V D + D +G LD+ V
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTV 93
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWNEEHMFVASEP 261
LR V EA+DL P D+ D VR+ Q T + V +S P WNE F E
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ---TLETSVVKKSCYPRWNEVFEFELMEG 58
Query: 262 FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
+ + V V D K++ LG+ + ++ + Q + WF L P AEE +
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ-----AKQEEGWFRL-LPDPRAEEESG 112
Query: 322 KN 323
N
Sbjct: 113 GN 114
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-------TKHLEKNQNPVWNQIFAFS 94
L V V+ +L D+ G+ DPYV++ L + G TK ++K NP WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 95 KERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVP-PDSPLAPQWYRLEDKKGDQT 153
+ LL + + +DDF+G+V + L+ +P P + + Y L +
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSR 121
Query: 154 TKGEIML 160
KG + L
Sbjct: 122 VKGHLRL 128
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 387 GKLTDAYCVAKYGNKWI-RTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445
G +D Y KYG K + +++TI L P W+E++T + D + I VFD Y G
Sbjct: 18 GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD--YDRGLT 75
Query: 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496
DD +G + LSTLE ++ L L P+ ++ G + L + T
Sbjct: 76 DDF----MGSAFVDLSTLELNKPTEVK--LKLEDPNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF 262
+L+V V A L +D G D ++L N R+ + +++NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTF-PIKDI 59
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLS 315
D++ VTV D + K E LG+ IP+ ++ + +W+ L L
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG-------ERKWYALKDKKLR 105
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTR--PSHVRSVNPVWNEEHMFVASEP 261
L V + E +DL P + D + +G+Q T+ ++NP WN F +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD---TLNPKWNSSMQFFVKDL 73
Query: 262 FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310
+D++ +TV DR D+ LGR I V ++ + + +K P + LH
Sbjct: 74 EQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH 122
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 38/133 (28%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPY------------VEVKLGNYKGITKH----------- 78
L V V++A+ L DV+G DPY K K K
Sbjct: 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89
Query: 79 ------LEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRV 132
+ NPVWN+ F F E + + L + + D D DDF+G V++ L +P
Sbjct: 90 IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP--- 143
Query: 133 PPDSPLAPQWYRL 145
S W++L
Sbjct: 144 ---SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V V +AQDL+P D + A V + Q + TR + +NPVWNE+ +F S+P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDP-S 59
Query: 264 DL----IIVTVEDRIRPG-KDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLS 315
L + V V + R G + LGR I + E + + L K L
Sbjct: 60 RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAV----VQRYPLEKRGLF 112
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-07
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK---GITKHLEKNQNPVWNQIFAFSKE 96
H + +V+A NL +G DPYV + N K T+ + NP W++ F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLS 126
+ + TV D+ +GK D GR SL L
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKLD 91
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN--YK-GITKHLEKNQNPVWNQIFAFSKERL 98
L V ++ A+ L D G +DPYV ++ K + K +NP WN+ F F+ E
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVEYP 60
Query: 99 QS---SLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL--RVPPDSPLAPQWYRLEDKKGDQ 152
+ L + + DKD DDF+G ++ L + P + L P Y + D
Sbjct: 61 GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNV--VLEDD 118
Query: 153 TTKGEI 158
T KGEI
Sbjct: 119 TYKGEI 124
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 373 ILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVI 431
++ A++LM KDG+ + AY + + RTRT L P WNE+ ++V DP +
Sbjct: 6 VVDAQDLMP---KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLS 62
Query: 432 TIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL--ETDRIYTHYYPL 475
+ + Y N + + +G+VRI ++ ++ + YPL
Sbjct: 63 NLVLEVYVY-NDRRSGRRRSFLGRVRISGTSFVPPSEAVV-QRYPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 349 HFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI-RTRT 407
+ D+ +IG +E+ I SA+ L + S D Y + ++ I +TR
Sbjct: 418 SLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRV 477
Query: 408 ILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467
+TL P WNE + + + + ++D D+ +G ++ L+ L +
Sbjct: 478 KKNTLNPVWNETFYILLNSFTDPLNLSLYD------FNSFKSDKVVGSTQLDLALLHQNP 531
Query: 468 IYTHYYPLLLLTPSGLKNNGELHLALRF 495
+ + L KN G L LRF
Sbjct: 532 VKKNELYEFL---RNTKNVGRLTYDLRF 556
|
Length = 1227 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 41 YLCVNVVKARNLPVMDVSGSL-DPYVEVKL----GNYKGITKHLEKNQNPVWNQIFAF-- 93
L V+++KARNLP + DP+V+V L +K K QNP +++ F F
Sbjct: 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQ-SKVKRKTQNPNFDETFVFQV 73
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL 130
S + LQ L ++V D D + +G V L + L
Sbjct: 74 SFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGITK-HLEKNQNPVWNQIFAFS-KER-LQ 99
+ ++ A +L +++ G + Y V + ++K T + NP WN+ F ER LQ
Sbjct: 4 ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63
Query: 100 SSLLEVTVK---DKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150
L +T++ ++ D +G V + L + P L Y+L G
Sbjct: 64 QGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNE----EHMFV 257
+ LR ++++A+DL+ +DK D R+ NQ + T +++P W++ + + +
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVEL 59
Query: 258 ASEPFEDL------IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311
P E++ ++V + D+ GKDE LGR + V E P +WF ++K
Sbjct: 60 YGSP-EEIAQNPPLVVVELFDQDSVGKDEFLGRSVA-KPLVKLDLEEDFPPKLQWFPIYK 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 50 RNLPV-MDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERL----QSS 101
+ L +G L PY E+ L Y T+ +K NP WN S E L + S
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNGKLVYT--TRVKKKTNNPSWNA----STEFLVTDRRKS 54
Query: 102 LLEVTVKDKDIGKDDFVGRVSLDLSQV 128
+ V VKD D +G VS+ L+ +
Sbjct: 55 RVTVVVKDDRDRHDPVLGSVSISLNDL 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 204 LRVFVFEAQDLVPSD-------KGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWNEEH 254
LR+ V EAQDLV D KG++ D V +++G Q T S V ++NP WNE +
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKS-DPYVIVRVGAQ---TFKSKVIKENLNPKWNEVY 58
Query: 255 -MFVASEPFEDLII-VTVEDRIRPGKDEILGRELIPVRNV 292
V P ++L I + ED P KD+ LGR I + +V
Sbjct: 59 EAVVDEVPGQELEIELFDED---PDKDDFLGRLSIDLGSV 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 26/134 (19%)
Query: 37 ELMHYLC---------VNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGITKH---LEKNQ 83
ELM LC + ++KARNL MD++G DPYV+V L + + K ++KN
Sbjct: 2 ELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNT 61
Query: 84 -NPVWNQ--IFAFSKERLQSSLLEVTVKDKD-IGKDDFVG--RVSLDLSQV------PLR 131
NP +N+ +F E + + L + V D D +G ++ +G RV + +
Sbjct: 62 LNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEML 121
Query: 132 VPPDSPLAPQWYRL 145
P P+A QW++L
Sbjct: 122 ANPRKPIA-QWHQL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLL 103
V+V A L D G DPYV +K + + +P ++ F +++ +S +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 104 EVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQ 141
+ V + ++ D+F+G+ +L + PL +
Sbjct: 67 -IQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKR 103
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-06
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 205 RVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV-RSVNPVWNEEHMFVASEPFE 263
RV+V A++L P D D ++I+LG + R +++ ++NPV+ + A+ P
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 264 DLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313
++ ++V D G D+++G +I + + R+F+ H+ +
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDLED-------------RFFSKHRAT 99
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAF-SKERLQS 100
L V V++A L D S D YV+V G + T+ + N NP WN F F S E
Sbjct: 30 LTVTVLRATGL-WGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPG 88
Query: 101 SLLEVTVKDKDIG-KDDFVGRVSLDLSQ 127
L V D+D G DD +G S+
Sbjct: 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEA 116
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV--RSVNPVWNEEHMFVAS 259
L V V +A+DL P D G + V++ L + R + +++NP WN+ + ++
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY-SN 76
Query: 260 EPFEDLII----VTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD-PRWFNLH 310
E L VTV D R G+++ LG +I + L D P W+ L
Sbjct: 77 VRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL-------ADALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 42 LCVNVVKARNLPVMD-VSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQ--IFAFSK 95
L V + +A +LP D +GS DPYV + T+ + K+ NPVW + +
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62
Query: 96 ERLQSSL-LEVTVKDKD-IGKDDFVGRVSLDL 125
+ +++ L + D D DD +GRV +DL
Sbjct: 63 DEVKAGERLSCRLWDSDRFTADDRLGRVEIDL 94
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQS 100
L + +++A+NLP DPY V L + TK +EK NP W + F F
Sbjct: 2 LRLRILEAKNLPSKGTR---DPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDV 57
Query: 101 SLLEVT--VKDKD-IGKDDFVGRVSLD 124
+ ++ KDK +D +G+V+L
Sbjct: 58 TFFTLSFYNKDKRSKDRDIVIGKVALS 84
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 357 SSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRW 416
++S R IG L + I+ ++L + + +GK +D YC G++ +T+ + DTL P+W
Sbjct: 5 LARSQRASGIGRLMVVIVEGRDL-KPCNSNGK-SDPYCEVSMGSQEHKTKVVSDTLNPKW 62
Query: 417 NEQYTWDVYD-PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467
N + V D V+ I VFD + S DD +G+ IR++ + +
Sbjct: 63 NSSMQFFVKDLEQDVLCITVFDRDFF--SPDDF----LGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTR---PSHVRSVNPVWNEEHMFVA 258
+ V + +A++L D D V++ L ++ RV + R++NPV+NE +F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDK-RVEKKKTVIKKRTLNPVFNESFIFNI 75
Query: 259 SEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVP--QRHETTKLPDPR 305
P E L +I+TV D+ R +++++G+ + ++ +H L PR
Sbjct: 76 --PLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPR 126
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI-RTRTILDTLAPRWNEQYTWDVYD 426
+L++ I AKNL +S K+ D YC + + RT+T+ +L P + E + +++
Sbjct: 1 SLKIKIGEAKNLPP-RSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR 59
Query: 427 PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNN 486
++ ++D + +D IGKV I+ L ++PL + +
Sbjct: 60 TFRHLSFYIYDRDVLR------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQ 112
Query: 487 GELHLALRF 495
G++HL LR
Sbjct: 113 GKVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L+V V +L D + D V + LGNQ TR +++NPVWNEE P
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNP-M 60
Query: 264 DLIIVTVEDRIRPGKDEILGR---ELIPVRNVPQRHETTKLPDP 304
+ + V D+ KD+ +G +L P+ + P
Sbjct: 61 APLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGG 104
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 42 LCVNVVKARNLPVMD--VSGSLDPYVEVKL-GNYKGITKHLEKNQNPVWNQIFAFSKERL 98
+ V + A L D ++G++DPY+ V G T+ + NPVWN+ F
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF 497
Query: 99 QSSL-LEVTVKDKDIGKDDFVGRVSLDL 125
L L + + D VG LDL
Sbjct: 498 TDPLNLSLYDFN-SFKSDKVVGSTQLDL 524
|
Length = 1227 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 42 LCVNVVKARNLPVMDVSGSL-DPYVEV-----KLGNYKGITKHLEKNQNPVWNQIFAF-- 93
L V++ + RNL D +PYV+V K K T + NPV+N+ +
Sbjct: 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
SK +L++ L+++V D G++ F+G V + L L DS +WY L
Sbjct: 76 SKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL----DSQ-QSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL 98
M LCV V KA+ + + YV +K+ N K T + +Q P W Q F F RL
Sbjct: 1 MSLLCVLVKKAK---LDGAPDKFNTYVTLKVQNVKSTTIAVRGSQ-PCWEQDFMFEINRL 56
Query: 99 QSSLLEVTVKDKDIGKDDFVGRVSLDLSQVP 129
L+ + + +K + D VG V + LS +
Sbjct: 57 DLGLV-IELWNKGLIWDTLVGTVWIPLSTIR 86
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-05
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKH-----LEKNQNPVWNQIFAF--S 94
L V++++A+ L D+S DP+V+++L + + K + +P +N+ F+F
Sbjct: 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVP 75
Query: 95 KERLQSSLLEVTVKDKDI-GKDDFVGRV 121
+E L++ L TV ++ +DF+GR+
Sbjct: 76 QEELENVSLVFTVYGHNVKSSNDFIGRI 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 375 SAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCT-VITI 433
SAKNL KS K Y G +++ T P W E +T+ V +P + I
Sbjct: 8 SAKNLPLAKS--TKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEI 65
Query: 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTL--ETDRIYTHYYPL 475
V KDD + +G + + LS L E D +PL
Sbjct: 66 EV---------KDDKTGKSLGSLTLPLSELLKEPDLTLDQPFPL 100
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL---GNQLRVTRPS-HVRSVNPVWNEEHMF-VA 258
L V + EA++L D G D V+I L G +L+ + + R++NP +NE F V
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVP 76
Query: 259 SEPFEDL-IIVTVEDRIRPGKDEILGRELIPVR--NVPQRHETTKLPDPR-----WFNLH 310
E + + +IVTV D R GK++ +G+ ++ RH + L PR W L
Sbjct: 77 FEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
+ + V AQ L+ DK D V +Q+G + T+ +++NPVWNE+ F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNS-S 60
Query: 264 DLIIVTVED-------RIRPG----KDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312
D I V V D R++ D+ LG+ +I VR + + W+NL K
Sbjct: 61 DRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDV-------WYNLEKR 113
Query: 313 S-LSAEEGA 320
+ SA GA
Sbjct: 114 TDKSAVSGA 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 47 VKARNLPVMDV-SGSLDPYVEVKL--GNYKGITKH-----LEKNQNPVWNQIFAF----- 93
+ RNL DV S S DP+V V + G + ++ N NP + F
Sbjct: 7 ISCRNLLDKDVLSKS-DPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE 65
Query: 94 SKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQV 128
++L+ + +V K KD+ DF+G L ++
Sbjct: 66 EVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFS----KERL 98
+++ KA +L ++ G +DPYV V + KG T + NPVW+++ +++
Sbjct: 5 LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKI 64
Query: 99 QSSLLEVTVKDKDIGKDDFVGRVSLDLSQV 128
LEV +K +GKD +G V +++S +
Sbjct: 65 ---TLEVMDYEK-VGKDRSLGSVEINVSDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 369 LELGILSAKNLMQMKSKD--GKLTDAYCVAKY-GNKWIRTRTILDTLAPRWNEQYTWDVY 425
L + ++SA+NL S D GK +D + G K +T+TI TL P WNE + V
Sbjct: 1 LTVDVISAENLP---SADRNGK-SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV- 55
Query: 426 DPC---TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSG 482
P V+ + V+D + G KDD +G I LS LE + P L G
Sbjct: 56 -PSRVRAVLKVEVYD--WDRGGKDDL----LGSAYIDLSDLEPEETTELTLP---LDGQG 105
Query: 483 LKNNGELHL 491
G + L
Sbjct: 106 GGKLGAVFL 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLR---VTRPSHVRSVNPVWNEEHMF--VA 258
LR+ + +A DL + D VR+ + ++ VT + +NPVW+ E ++ V
Sbjct: 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNT---LNPVWD-EVLYVPVT 58
Query: 259 SEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
S I + V D + GKD LG I V ++ +++E K
Sbjct: 59 SP--NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGK 98
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L +NV++A LPV V PY + L K + + NPVW++ F F +
Sbjct: 6 LQLNVLEAHKLPVKHVP---HPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVN 62
Query: 102 LLEVTVKDKDI-GKDDFVGRVSLDLSQVP 129
+++ +K KD + V++ LS++
Sbjct: 63 SFTISLSNKAKRSKDSEIAEVTVQLSKLQ 91
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 47 VKARNLPVMDVSGSLDPYVEVKLGN--------YKGITKHLEKNQNPVWNQIFAFSKERL 98
+ L D G DP++E+ + Y+ T+ ++ NPVW F ++L
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYR--TEVIKNTLNPVWKP-FTIPLQKL 63
Query: 99 ----QSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
+++ V D D GK D +G L ++
Sbjct: 64 CNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDEL 98
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKL----GNYKGITKHLEKNQNPVWNQIFAF- 93
M L V +++ARNL D SG+ DPY +V+L N K +K +K NP +++ F F
Sbjct: 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQ-SKIHKKTLNPEFDESFVFE 73
Query: 94 -SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL 130
+ L LEV + D D +D+ +G V L L++V L
Sbjct: 74 VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDL 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 367 GTLELGILSAKNLMQM-KSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVY 425
G L + ++ AK+L +S GK +D Y + G + +T+TI +TL P+WN + ++
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGK-SDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 426 DP-CTVITIGVFDNCYVNGSKDD 447
++ + ++D G KD
Sbjct: 60 SAQNQLLKLILWDKDRFAG-KDY 81
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 29/139 (20%)
Query: 368 TLELGILSAKNLMQMKSKDGKLT---DAYCVAK-YGNKWIRTRTILDTLA---PRWNEQY 420
TLE+ I+SA++L K+ L Y V + T D P WNE
Sbjct: 1 TLEITIISAEDL-----KNVNLFGKMKVYAVVWIDPSHKQSTPV--DRDGGTNPTWNETL 53
Query: 421 TWDV-----YDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL---ETDRIYTHY 472
+ + +TI V+ G K IG+VR+ L L + +
Sbjct: 54 RFPLDERLLQQGRLALTIEVYCERPSLGDKL------IGEVRVPLKDLLDGASPAGELRF 107
Query: 473 YPLLLLTPSGLKNNGELHL 491
L PSG K G L+
Sbjct: 108 LSYQLRRPSG-KPQGVLNF 125
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 204 LRVFVFEAQDLVPSDKGRA-PDACVRIQLGNQLRVTRPSHV--RSVNPVWNEEHMFVASE 260
L V++ A++L P K P V + +G T+ S V R+ NPVW E F+
Sbjct: 2 LFVYLDSAKNL-PLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRN 57
Query: 261 PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309
P + + V+D + LG +P+ + + L + F L
Sbjct: 58 PENQELEIEVKDD---KTGKSLGSLTLPLSELLKE---PDLTLDQPFPL 100
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRV---TRPSHVRSVNPVWNEEHMFV 257
L+ +R+ A++L D V + N R TR + ++NP W+EE F
Sbjct: 2 LFTIRIV--RAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEE--FE 56
Query: 258 ASEPFED--LIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309
P + I TV DR GK ++ GR ++ P+R LP W +L
Sbjct: 57 LEVPAGEPLWISATVWDRSFVGKHDLCGRAS--LKLDPKRFGDDGLPREIWLDL 108
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 65 VEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVGRVSL 123
V V N K TK +E N P WN+ F+F + +LL + V++ D+ KDDF G+ L
Sbjct: 506 VGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCL 565
Query: 124 DLSQVPLRVPPDSPLAPQWYRLEDKKGDQ 152
+S+ LR P P L DKKG++
Sbjct: 566 PVSE--LR--PGIRSVP----LHDKKGEK 586
|
Length = 599 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV-RSVNPVWNEEHMFVASEP 261
YL V V +A+ L P++ D V ++LGN T+ + R+ NP WN+ F
Sbjct: 1 YLYVRVVKARGL-PANSN---DPVVEVKLGNYKGSTK--AIERTSNPEWNQVFAFSKDRL 54
Query: 262 FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD----PRWFNL 309
+ V+V D+ KD+ LG + VP R PD P+W+ L
Sbjct: 55 QGSTLEVSVWDK-DKAKDDFLGGVCFDLSEVPTR----VPPDSPLAPQWYRL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWN-EQYTWDVYDP 427
L++ +++A++L M + LTDA+ K+G+ +T + +L P WN E + ++V D
Sbjct: 1 LKVRVVAARDLPVMD-RSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDE 59
Query: 428 C---TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463
+ I V D+ S +DA IGKV I L+ L
Sbjct: 60 ELQDEPLQIRVMDHDTY--SANDA----IGKVYIDLNPL 92
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI-RTRTILDTLAPRWNEQYTWDVYD 426
+L + I+ KNL K G +D YC+ K N+ I RT T+ TL P W E+YT V+
Sbjct: 1 SLYIRIVEGKNL-PAKDITGS-SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYT--VHL 56
Query: 427 PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD-RIYTHYYPLLLLTPSGLKN 485
P T+ YV ++D IGKV + + R + L + P +
Sbjct: 57 PPGFHTVSF----YVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EV 111
Query: 486 NGELHLALR 494
GE+HL L
Sbjct: 112 QGEIHLELS 120
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVA 258
P+ + +RV V EA+ LV G D V++++G Q + T + P +NE F
Sbjct: 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNF 55
Query: 259 SEP----FEDLIIVTVEDRIRPGKDEILG 283
E F+ +I ++V D D ++G
Sbjct: 56 HESPDELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 373 ILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVI 431
+ SA+ L +D D Y + K + +R+ DTL+P ++ Q + P + I
Sbjct: 9 VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65
Query: 432 TIGVFDNCYVNGSKDDAKDQRIGKVRI 458
I V+ + + D+ +G+ +
Sbjct: 66 KIQVW-------NSNLLCDEFLGQATL 85
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR-SVNPVWNEEHMFVASEPF 262
L++ V EA L P P I L N+++V R + VR NPVW+EE +F P
Sbjct: 6 LQLNVLEAHKL-PVKH--VPHPYCVISL-NEVKVAR-TKVREGPNPVWSEEFVFDDLPPD 60
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL--HKPSLSAEEGA 320
+ +++ ++ + KD + + + + ET + W+ L P E G+
Sbjct: 61 VNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDE-----WYPLSSASPLKGGEWGS 115
Query: 321 EKNKEKFSSKI 331
+ + ++S ++
Sbjct: 116 LRIRARYSHEL 126
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 60 SLDPYVEVKLGNY---KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV-KDKDIGKD 115
LDPYV + + + K TK K +PVWN+ F+ E LE+TV D IG D
Sbjct: 34 LLDPYVSIDVDDTHIGKTSTKP--KTNSPVWNE--EFTTEVHNGRNLELTVFHDAAIGPD 89
Query: 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
DFV ++ + R L W LE
Sbjct: 90 DFVANCTISFEDLIQRGSGSFDL---WVDLE 117
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 44 VNVVKARNLP----VMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQ 99
+ + +LP + +DP+V + G T NPV+N+ AF +
Sbjct: 5 MEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHE 64
Query: 100 SS-LLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSP 137
+ ++ V DKD +D+V SL + ++ P P
Sbjct: 65 KNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQ--IFAFS 94
L V VVKARNL + + DP+V+V L K T + NP++N+ IF+
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 95 KERLQSSLLEVTVKDKDI-GKDDFVGRV 121
LQ L VTV + GK VG V
Sbjct: 77 AIVLQDLSLRVTVAESTEDGKTPNVGHV 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 62 DPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120
DPY V L + T+ +E ++NPVWN+ F S +E TVKD D+ +GR
Sbjct: 59 DPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASH-VEFTVKDNDVVGAQLIGR 117
Query: 121 VSL 123
+
Sbjct: 118 AYI 120
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 369 LELGILSAKNLMQMKSKDG--KLTDAYCVAKY-GNKWIRTRTILDTLAPRWNEQYTWDVY 425
+ L +L A L +K +L D + V G + T TL P+WNE + D+
Sbjct: 2 VRLTVLCADGL----AKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHF--DLT 55
Query: 426 D-PCTVITIGVFD 437
P ++ITI VFD
Sbjct: 56 VGPSSIITIQVFD 68
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 49 ARNLPVM---DVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFS----KERLQSS 101
A+ L V+ D GS D Y K G T+ +E + NP WN+ + + L
Sbjct: 9 AQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVG 68
Query: 102 LLEVTV--KDKDIGKDDFVGRVSLDLS 126
+ + + + + D +G+V + LS
Sbjct: 69 VFDNSQSHWKEAVQPDVLIGKVRIRLS 95
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPC 428
+ + ++ A+ L K K G +D Y + G RT+TI L P WNE++ ++ ++
Sbjct: 3 ISITVVCAQGL-IAKDKTGT-SDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS 60
Query: 429 TVITIGVFD 437
I + V+D
Sbjct: 61 DRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 29/137 (21%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL--GNYKGITKHLE---KNQNPVWNQIFAF--- 93
L V V++ +L + +G+ DPY V L N K TK + K NP +++ F F
Sbjct: 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 94 ---SKERLQS-------SLLEVTVK---DKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAP 140
S E+ Q LE+ V G D F+G V ++PLR +
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEV-----RIPLRGLDLQAGSH 114
Query: 141 Q-WYRLEDKKGDQTTKG 156
Q WY L+ ++ T G
Sbjct: 115 QAWYFLQPREEKSTPPG 131
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 659 KEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQ 707
KE D L + ++ D V L S+ +G+L
Sbjct: 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYC---VAKYGNKWIRTRTILD--TLAPRWNEQYT 421
G L + IL AKNL +M G L+D Y + + G + + +T + TL P +NE ++
Sbjct: 15 GKLTVVILEAKNLKKMDV--GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFS 72
Query: 422 WDV-----YDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRI 458
++V ++T+ +D K+ IGKV +
Sbjct: 73 FEVPFEQIQKVHLIVTVLDYDRI--------GKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 42 LCVNVVKARNLPVMDV-SGSLDPYVEV-------KLGNYKGITKHLEKNQNPVWNQIFAF 93
L V+V++ ++L D DPYV+ G K T +K NPV+N+ +
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRK--TSVKKKTLNPVFNETLRY 74
Query: 94 S--KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
+E L + +L ++V +D +G++ F+G V +DL S P WY L+
Sbjct: 75 KVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDW-----SNTQPTWYPLQ 125
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 46/227 (20%), Positives = 74/227 (32%), Gaps = 33/227 (14%)
Query: 76 TKHLEKNQNPVWN-QIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPP 134
T L+ +P WN Q +R SS+ VT D G+V +
Sbjct: 615 TGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVT-------FDVQSGKVIATEGSTLPDLID 667
Query: 135 DSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSK 194
+ + L + KG W + SK
Sbjct: 668 RTLDTFLVFPLRNPKGR--IFITNY---WKPIYNAGGSS-------------------SK 703
Query: 195 VYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEH 254
+ + +RV V +A DL G D + + N ++ ++NP+WN E
Sbjct: 704 TVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWN-EI 762
Query: 255 MFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKL 301
++V + + D G D LG I V NV ++ E + L
Sbjct: 763 LYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSAL 809
|
Length = 1227 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 360 SLRKGSIGTLELGILSAKNLMQMKSKDGKL---TDAYCVAKYGNKWIRTRTILDTLAPRW 416
R+G + TL + +L A L G TD Y +G + RT I + PRW
Sbjct: 22 PTRRG-LATLTVTVLRATGLW------GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRW 74
Query: 417 NEQY 420
N +
Sbjct: 75 NATF 78
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.96 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.95 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.93 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.92 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.89 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.88 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.88 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.85 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.82 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.82 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.81 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.81 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.81 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.81 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.8 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.8 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.8 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.79 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.78 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.77 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.77 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.77 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.77 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.77 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.77 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.76 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.76 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.76 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.76 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.76 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.76 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.75 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.75 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.75 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.75 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.74 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.74 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.74 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.74 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.74 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.74 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.74 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.74 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.73 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.73 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.73 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.73 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.73 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.72 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.72 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.72 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.72 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.72 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.72 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.72 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.72 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.71 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.71 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.71 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.71 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.71 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.71 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.71 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.71 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.7 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.7 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.7 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.7 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.7 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.7 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.69 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.69 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.69 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.69 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.69 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.68 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.68 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.68 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.67 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.67 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.67 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.67 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.67 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.66 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.66 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.66 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.66 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.65 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.65 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.65 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.65 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.65 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.65 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.65 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.65 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.64 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.64 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.64 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.64 | |
| PLN03008 | 868 | Phospholipase D delta | 99.64 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.63 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.63 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.63 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.63 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.63 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.63 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.62 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.62 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.62 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.62 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.62 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.61 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.61 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.61 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.61 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.61 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.61 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.61 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.6 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.6 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.6 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.6 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.59 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.59 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.59 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.58 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.58 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.58 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.57 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.57 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.57 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.57 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.57 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.56 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.56 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.56 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.55 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.55 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.55 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.54 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.54 | |
| PLN03008 | 868 | Phospholipase D delta | 99.53 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.53 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.53 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.52 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.52 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.5 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.5 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.49 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.45 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.44 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.42 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.38 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.37 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.28 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.28 | |
| PLN02270 | 808 | phospholipase D alpha | 99.24 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.24 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.2 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.19 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.16 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.16 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.15 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.15 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.11 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.09 | |
| PLN02270 | 808 | phospholipase D alpha | 99.06 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.05 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.02 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.02 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.98 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.98 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.96 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.96 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.94 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.93 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.88 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.85 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.84 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.83 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.82 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.82 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.82 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.76 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.75 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.72 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.7 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.66 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.62 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.61 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.44 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.42 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.37 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.35 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.9 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.89 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.76 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.73 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.57 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.5 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.35 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.3 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.16 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.59 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 96.08 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.6 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.58 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.56 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.32 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.11 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.01 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.81 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.8 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.57 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 94.52 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.13 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.02 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.81 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.47 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.46 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.41 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.91 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.88 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.28 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.09 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.89 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 90.55 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 89.79 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 89.59 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 88.93 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 87.92 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.87 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 86.27 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 84.44 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 84.29 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 83.56 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 83.36 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 82.36 | |
| PF08151 | 72 | FerI: FerI (NUC094) domain; InterPro: IPR012968 Th | 81.85 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 80.69 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=326.42 Aligned_cols=156 Identities=62% Similarity=1.169 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCcccchhhhcchhhhhcccCCCcccccccCCCCCCCChhHHHHHHHHHhhhhhh
Q 003975 617 LPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQ 696 (782)
Q Consensus 617 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~ 696 (782)
+|+++++++++++|||++||.+|+|+|.++|++++++ +||+|||+|.+|++++.+.+++||+++|+++++
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~----------~deldEEfD~~ps~~~~~~lr~Rydrlr~va~r 70 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAH----------PDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGR 70 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCC----------cchhhhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCCCCCCCCchhhhhccCCC
Q 003975 697 LQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776 (782)
Q Consensus 697 vq~~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~~~~~~~~~~~~~~r~ps 776 (782)
|||++|++|+++||++|+|+|+||++|++++++|+++++++|++|+|+++++||+|++|||+||+++|+.+.|||+||||
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs 150 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPS 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 003975 777 KSDMLI 782 (782)
Q Consensus 777 ~~~~~~ 782 (782)
++|+||
T Consensus 151 ~~d~~l 156 (156)
T PF08372_consen 151 RSDSML 156 (156)
T ss_pred chhhcC
Confidence 999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=267.27 Aligned_cols=227 Identities=30% Similarity=0.429 Sum_probs=192.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEec--cC
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~--~~ 98 (782)
.|...+++.||+ +...|.|+|++|++|+..|..|.+||||++++.. .+.+|++.++|+||+|||+|.|.+. ++
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 445566666666 6789999999999999999788999999999975 4689999999999999999999964 46
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEEEecccCCccccccc
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAVWMGTQADESFAEAW 176 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~~~~~~~d~~~~~~~ 176 (782)
....|.+.|||+|.+ ++++||++.++|..+..... ...|.+|....... ...|+|.++++|.+
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p---------- 295 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLP---------- 295 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeec----------
Confidence 789999999999999 99999999999998876532 56899998864222 12489999999974
Q ss_pred cCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCccc
Q 003975 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWN 251 (782)
Q Consensus 177 ~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wn 251 (782)
..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+||
T Consensus 296 -----------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~n 351 (421)
T KOG1028|consen 296 -----------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFN 351 (421)
T ss_pred -----------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCccc
Confidence 3467999999999999999999999999999943 3466777776 9999999
Q ss_pred ceeEEEecC--CCCCeEEEEEEEccCCCCCceeEEEEEeCCC
Q 003975 252 EEHMFVASE--PFEDLIIVTVEDRIRPGKDEILGRELIPVRN 291 (782)
Q Consensus 252 e~f~f~v~~--~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~ 291 (782)
|+|.|.+.. ..+..+.|+|||++..+++++||.+.+....
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999998863 3455899999999999999999999998764
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=263.48 Aligned_cols=398 Identities=20% Similarity=0.239 Sum_probs=300.1
Q ss_pred cccceeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCC
Q 003975 35 LVELMHYLCVNVVKARNLPVMD--VSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKD 111 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d 111 (782)
.....|+|.|+|.+|++|...+ .++..|||+.+.+.+ ...+|++++++.||+|||+|++.++.. ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4567899999999999999888 589999999999876 467999999999999999999999875 688999999988
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCccccccccccc
Q 003975 112 IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLAN 190 (782)
Q Consensus 112 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 190 (782)
.. +|+.+|++.++|..|..+.... .+-+.+.. +.. ..|+|...+.|.+..+......- +.
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k--~vGrL~yDl~ffp~~e~k~~~~~-s~----------- 570 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTK--NVGRLTYDLRFFPVIEDKKELKG-SV----------- 570 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec-cCc--cceEEEEeeeeecccCCcccccc-cc-----------
Confidence 88 9999999999999998765432 22333332 122 58999999998865433211000 00
Q ss_pred cccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eeeecccCCCCCCcccceeEEEecCCCCCeEEEE
Q 003975 191 TRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL-RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVT 269 (782)
Q Consensus 191 ~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~ 269 (782)
....+...|++.+++.++++|..... .+..-++++++..+. +.|+..+. +.+|.||+++...+.+.....+.+.
T Consensus 571 ---e~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 571 ---EPLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ---CCcccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 00011236889999999999975432 222334889988765 45577776 9999999999999998888899999
Q ss_pred EEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcc
Q 003975 270 VEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTH 349 (782)
Q Consensus 270 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~ 349 (782)
++|.. ..+.+|+...+|.++. +.......||++..+. |+|.+..++.+-|...+.
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li----~~t~dt~~~f~~~~~k---------------g~I~~t~~W~Pi~~~~~~--- 700 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLI----DRTLDTFLVFPLRNPK---------------GRIFITNYWKPIYNAGGS--- 700 (1227)
T ss_pred ecccc---cCceeccccccchHhh----hccccceEEEEcCCCc---------------ceEEEEeccceeeccccc---
Confidence 98864 5678999999998887 3455577899998663 899988876554422111
Q ss_pred cCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeCC
Q 003975 350 FSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYDP 427 (782)
Q Consensus 350 ~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~~ 427 (782)
.+...+..++|.++|.|..|.+|... ...+. |||++|.+++ .++||-....++||.||+...-++..+
T Consensus 701 -------~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk 770 (1227)
T COG5038 701 -------SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK 770 (1227)
T ss_pred -------cceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC
Confidence 11222357899999999999999854 23456 9999999987 579999999999999999999999999
Q ss_pred CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC---ceEEEEEeeee----cCCCCCCcCcEEEEEEEEEEc
Q 003975 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD---RIYTHYYPLLL----LTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 428 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~~----~~~~g~~~~G~i~l~~~~~~~ 498 (782)
.+.+.++++|....+ .|..||.+.|+++++... ..+..-+.=.. ....|.+..|.+.+..+|-+.
T Consensus 771 ~~r~~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 771 NQRLTLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred ccEEeeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999999998876 899999999999998661 11111111111 111234457888888888554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=246.46 Aligned_cols=214 Identities=25% Similarity=0.385 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecC--CCCCeEEEEEEEccC
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRIR 275 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~~ 275 (782)
...|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.+.|||+|.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 345999999999999999777899999999965 5688999987 9999999999999643 346699999999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCC
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQ 355 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~ 355 (782)
++++++||++.++|..+... .....|.+|...... .....|+|.+++|+
T Consensus 245 fsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~--------~~~~~gel~~sL~Y------------------ 293 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTD--------SEELAGELLLSLCY------------------ 293 (421)
T ss_pred cccccEEEEEEecCcccccc-----ccceeeeccccccCC--------cccccceEEEEEEe------------------
Confidence 99999999999998887642 226779999876321 11122899999997
Q ss_pred ccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CC---EEEeecccCCCCCCeeccEEEEEeeCC--
Q 003975 356 TSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GN---KWIRTRTILDTLAPRWNEQYTWDVYDP-- 427 (782)
Q Consensus 356 ~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~---~~~rT~~~~~t~~P~wne~~~f~v~~~-- 427 (782)
.|..|.|+|.|++|+||+.++.. +. ||||++.+ ++ .+.+|.+.+++.||+|||.|.|.|...
T Consensus 294 -------~p~~g~ltv~v~kar~L~~~~~~---~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l 363 (421)
T KOG1028|consen 294 -------LPTAGRLTVVVIKARNLKSMDVG---GLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQL 363 (421)
T ss_pred -------ecCCCeEEEEEEEecCCCcccCC---CCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHh
Confidence 34468999999999999998643 55 99999988 33 458999999999999999999988742
Q ss_pred -CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccc
Q 003975 428 -CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 428 -~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
...|.|+|||++.++ .+++||.+.+....
T Consensus 364 ~~~~l~l~V~d~d~~~------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 364 AEVSLELTVWDHDTLG------SNDLIGRCILGSDS 393 (421)
T ss_pred heeEEEEEEEEccccc------ccceeeEEEecCCC
Confidence 458999999999987 77899999998875
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-26 Score=252.92 Aligned_cols=315 Identities=21% Similarity=0.270 Sum_probs=203.2
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRP 276 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~ 276 (782)
|+...++|+|++|.+|.+.|.+|.+||||++.+|++. -+...+.+ |+||+|++.|++.+..+.+..+.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 5556799999999999999999999999999999976 45566776 99999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCC-cccccCCCCCCCCceEEccCCC---------ccc-----ccccccccccccceEEEEEEeccCc
Q 003975 277 GKDEILGRELIPVRN-VPQRHETTKLPDPRWFNLHKPS---------LSA-----EEGAEKNKEKFSSKILISFCLEAGY 341 (782)
Q Consensus 277 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~---------~~~-----~~g~~~~~~~~~G~i~l~i~~~~~~ 341 (782)
+.|+.||+..++|+. ....+ +.++...+-|...... ..- ..+.. .--+.+.. ..+.+.|..
T Consensus 689 ~~d~~iget~iDLEnR~~T~~-~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~--~P~~~~e~-~~i~~~g~~ 764 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRH-RARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIP--RPYYSYEV-SAIKWKGES 764 (1105)
T ss_pred cccchhhceehhhhhcccCcC-CcccCccceeeeeccccccCccCHHHHHHHhhcccCCC--CCeecCCc-ceEEecChh
Confidence 999999999999976 33332 3344444433322111 000 00000 00000110 111111110
Q ss_pred cccC-------------------------------CCcc----cCCC--------------CC------c-cccccccCc
Q 003975 342 HVFD-------------------------------ESTH----FSSD--------------LQ------T-SSKSLRKGS 365 (782)
Q Consensus 342 ~~~d-------------------------------~~~~----~~~d--------------~~------~-~~~~~~~~~ 365 (782)
...| +..+ ++.+ +- | -...-..+.
T Consensus 765 ~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~ 844 (1105)
T KOG1326|consen 765 DIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPK 844 (1105)
T ss_pred hhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChh
Confidence 0000 0000 0000 00 0 000011244
Q ss_pred eeEEEEEEEEeecCCCCccC-CCCCC-CcEEEEEECC---EEEeecccCCCC----CCeeccEEEEEe------------
Q 003975 366 IGTLELGILSAKNLMQMKSK-DGKLT-DAYCVAKYGN---KWIRTRTILDTL----APRWNEQYTWDV------------ 424 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~-~~~~~-dpyv~v~~~~---~~~rT~~~~~t~----~P~wne~~~f~v------------ 424 (782)
...++|.|+...+....|.. .+... |.||+-.+-+ ++.+|.++++++ |-+|.-.|-|.-
T Consensus 845 ~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kk 924 (1105)
T KOG1326|consen 845 KYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKK 924 (1105)
T ss_pred heeEEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhh
Confidence 66899999999888876543 12223 9999999843 468888888765 555544444421
Q ss_pred -----------eCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc----------------------cCCceEEE
Q 003975 425 -----------YDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL----------------------ETDRIYTH 471 (782)
Q Consensus 425 -----------~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l----------------------~~~~~~~~ 471 (782)
+.| ..|.|+|||+|.++ +|++||...++|+++ ...+.+.+
T Consensus 925 e~~ws~dete~k~p-~rl~iqiWD~d~fs------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~G 997 (1105)
T KOG1326|consen 925 EYSWSLDETEFKIP-ARLIIQIWDNDKFS------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKG 997 (1105)
T ss_pred hhccccccccccCc-hheEEEecccCccC------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccc
Confidence 111 37999999999987 999999999999986 34566889
Q ss_pred EEeeeecCCCCCCcCcEEEEEEEEEEcchhhhHhhcCCCCCCCCCcccCCchhhHHHHHHHHHHHHHHhhccCCCCChHH
Q 003975 472 YYPLLLLTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAAGLGRAEPPLRRE 551 (782)
Q Consensus 472 w~~L~~~~~~g~~~~G~i~l~~~~~~~~~~~~~~~y~~p~~p~~~~~~p~~~~~~~~~r~~~~~~~~~~~~~~~p~~~~~ 551 (782)
|+|+.........-+|++++++.+ +...++..+|.|.+|-+ -...|||.|++
T Consensus 998 WwP~~a~~~~~~~l~Gkvem~lei---------------lt~~EA~~~PAG~gr~e-------------Pn~Le~P~Rpd 1049 (1105)
T KOG1326|consen 998 WWPCQAEEGDAKVLAGKVEMSLEI---------------LTEKEADERPAGKGRDE-------------PNKLEPPNRPD 1049 (1105)
T ss_pred cceeeecCCCcceecceeeeehhh---------------hhhhhhhhCccccCCCC-------------CCcCCCCCCCC
Confidence 999998643223348999998765 34567777777765544 11456777776
Q ss_pred HH
Q 003975 552 VM 553 (782)
Q Consensus 552 ~~ 553 (782)
.+
T Consensus 1050 ts 1051 (1105)
T KOG1326|consen 1050 TS 1051 (1105)
T ss_pred cc
Confidence 54
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=234.31 Aligned_cols=412 Identities=21% Similarity=0.233 Sum_probs=289.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCc
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDD 116 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~ 116 (782)
..|.+.+++.++++|.... ..+..-++++++.. ..+.|+.++.+.+|.||+++...+.+.....+.+.++|.. ..+
T Consensus 577 n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~ 653 (1227)
T COG5038 577 NTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGK 653 (1227)
T ss_pred CcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCc
Confidence 4689999999999997543 22223338888887 4678899999999999999999999887888999999876 467
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCccccccccccccccccc
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVY 196 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~rs~~~ 196 (782)
.+|+...+|.++..... ....||++..+ +|+|.++..+.+-.-. ....++.+
T Consensus 654 ~i~~~~~~l~~li~~t~----dt~~~f~~~~~------kg~I~~t~~W~Pi~~~------------------~~~~s~~~ 705 (1227)
T COG5038 654 VIATEGSTLPDLIDRTL----DTFLVFPLRNP------KGRIFITNYWKPIYNA------------------GGSSSKTV 705 (1227)
T ss_pred eeccccccchHhhhccc----cceEEEEcCCC------cceEEEEeccceeecc------------------ccccceee
Confidence 89999999999886532 35689999853 6889998866642110 01123344
Q ss_pred cCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccC
Q 003975 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIR 275 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~ 275 (782)
.....|.++|.|..|.+|......+++|||+++.+++ .++||-.... +.||.||+....++..+ .+.+.+.+.|...
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEE 783 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchh
Confidence 5677899999999999999888899999999999988 5677777665 99999999999888776 5668999999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCc---------------------------eEEccCCCcc-------cccccc
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPR---------------------------WFNLHKPSLS-------AEEGAE 321 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~---------------------------w~~L~~~~~~-------~~~g~~ 321 (782)
.+.|..+|++.++++++..+. ++..... .|+....... ...++.
T Consensus 784 sgddr~lg~~~i~vsn~~~k~--~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~ 861 (1227)
T COG5038 784 SGDDRNLGEVNINVSNVSKKD--EDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEK 861 (1227)
T ss_pred ccccceeceeeeeeeeeeecC--CCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHH
Confidence 999999999999999988742 1111110 0110000000 000000
Q ss_pred c--------------------------------cc--------------ccccceE--------------EEEEEecc-C
Q 003975 322 K--------------------------------NK--------------EKFSSKI--------------LISFCLEA-G 340 (782)
Q Consensus 322 ~--------------------------------~~--------------~~~~G~i--------------~l~i~~~~-~ 340 (782)
+ .+ .-.+|-+ .+.+.++. +
T Consensus 862 ~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~ 941 (1227)
T COG5038 862 RKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDAS 941 (1227)
T ss_pred HHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCC
Confidence 0 00 0001111 12222222 2
Q ss_pred ccccCCCc-------------------cc--------C----CC-------------------------CCccccc----
Q 003975 341 YHVFDEST-------------------HF--------S----SD-------------------------LQTSSKS---- 360 (782)
Q Consensus 341 ~~~~d~~~-------------------~~--------~----~d-------------------------~~~~~~~---- 360 (782)
|+.+-.+. .+ . +| +...++.
T Consensus 942 ~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~ 1021 (1227)
T COG5038 942 HPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQV 1021 (1227)
T ss_pred CceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEE
Confidence 22110000 00 0 00 0000000
Q ss_pred cc------------cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeC
Q 003975 361 LR------------KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYD 426 (782)
Q Consensus 361 ~~------------~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~ 426 (782)
.+ -.+.|.|.|.+..|.||+..|. +|. ||||++.++++ .++|+++++|+||+|||.+..+|..
T Consensus 1022 ~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~---ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~ 1098 (1227)
T COG5038 1022 SYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE---NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098 (1227)
T ss_pred EEeecccccCcceeecccCcEEEEEeccCCCccccc---CCCCCceEEEEecceecccccchhccCCCCccccceEeeec
Confidence 00 1248999999999999998764 475 99999999887 7999999999999999999999985
Q ss_pred -CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 427 -PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 427 -~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
..+.++|.|+|+|.- .+++.||++.|+|+.+..+..+..-.+|.... . ....|.++....|
T Consensus 1099 r~~D~~~i~v~Dwd~~------~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~-~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1099 RVKDVLTINVNDWDSG------EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-F-IVLDGTLHPGFNF 1160 (1227)
T ss_pred cccceEEEEEeecccC------CCccccccccccHhhcCcCCccceeeeccCcc-e-EecccEeecceec
Confidence 467999999999963 48999999999999999999888888887533 1 1224666666544
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=216.69 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=200.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
..|.|+|.+|+||++.+..|.+||||.|.++. ...||.++.+++.|-|.|+|+|.+... -..|.|.|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEecccccccccc
Confidence 46899999999999999999999999999987 478999999999999999999999753 5779999999993399999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCccccccccccccccccccC
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFS 198 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~rs~~~~~ 198 (782)
|.+.+.-.+|.... ..+.|+.|..-....++.|+|++.+.+.....
T Consensus 84 GKvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~----------------------------- 129 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ----------------------------- 129 (800)
T ss_pred ceeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccC-----------------------------
Confidence 99999999987653 26789999987666668999999987753211
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----eeeecccCCCCCCcccceeEEEecCC-------------
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL----RVTRPSHVRSVNPVWNEEHMFVASEP------------- 261 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~T~~~~~~t~nP~wne~f~f~v~~~------------- 261 (782)
..-+.+.+++++++.+... +.+|||+++...+.. .+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 --~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 130 --SSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred --CCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 0115566677777777664 449999999997643 58888887 99999999999987644
Q ss_pred --CCCeEEEEEEE-ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEec
Q 003975 262 --FEDLIIVTVED-RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLE 338 (782)
Q Consensus 262 --~~~~l~i~V~d-~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~ 338 (782)
....|++++|+ .+....+.|+|++.+++..+.. ......||-|...+ .|.+..++...|.+++.+++.
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~-----~s~p~~W~~Lqp~~----~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ-----KSSPAAWYYLQPRP----NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh-----ccCccceEEEecCC----CcccCCCCCCccceeeeEEee
Confidence 23367888898 4556679999999999988763 23378899998774 344444555668888888764
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-22 Score=186.87 Aligned_cols=149 Identities=56% Similarity=0.949 Sum_probs=128.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeE
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILG 283 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG 283 (782)
|+|+|++|++|++.+.+|.+||||++.++++.++|+++.+++.||+|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999999999999999999999999998754799999999999998777789999999999888899999
Q ss_pred EEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCc
Q 003975 284 RELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQT 356 (782)
Q Consensus 284 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 356 (782)
++.++|+++.... +......+||+|.+..... .+++..+.+|+|++++++.+.|++.+++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~---~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRV-DDRPVPSRWFSLERPGGAM---EQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccC-CCCccCCceEECcCCCCcc---cccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999987532 3445689999998764100 0122346689999999999999999999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-22 Score=214.47 Aligned_cols=251 Identities=18% Similarity=0.273 Sum_probs=198.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEI 281 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~ 281 (782)
.|.|.|.+|+||++.+..|..||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+...+ ..|.|-|||+| .++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999987 5689999997 999999999999996543 46999999999 899999
Q ss_pred eEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCcccccc
Q 003975 282 LGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSL 361 (782)
Q Consensus 282 iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~ 361 (782)
||.+.|.-.++.. .+....|+.|..-+. +.+..|+|++++.+..+..
T Consensus 83 IGKvai~re~l~~-----~~~~d~W~~L~~VD~---------dsEVQG~v~l~l~~~e~~~------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHM-----YPGKDTWFSLQPVDP---------DSEVQGKVHLELALTEAIQ------------------- 129 (800)
T ss_pred cceeeeeHHHHhh-----CCCCccceeccccCC---------ChhhceeEEEEEEeccccC-------------------
Confidence 9999999888764 336889999987753 4567899999998744210
Q ss_pred ccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEE----EeecccCCCCCCeeccEEEEEeeCC----------
Q 003975 362 RKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW----IRTRTILDTLAPRWNEQYTWDVYDP---------- 427 (782)
Q Consensus 362 ~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~----~rT~~~~~t~~P~wne~~~f~v~~~---------- 427 (782)
..-+...++.++++.+.+ +.+.||||++...+.. .+|++.++|.+|.|||.|.|.+...
T Consensus 130 ----~~~~~c~~L~~r~~~P~~---~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 130 ----SSGLVCHVLKTRQGLPII---NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ----CCcchhhhhhhcccCcee---CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 113344555566665543 2345999999986644 5999999999999999999988533
Q ss_pred ------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCC-C---CCcCcEEEEEEEEEE
Q 003975 428 ------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPS-G---LKNNGELHLALRFTC 497 (782)
Q Consensus 428 ------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-g---~~~~G~i~l~~~~~~ 497 (782)
-..|.+.+||+..+. ..++|+|.+++++..+........||-|.....+ + ..-.|.+++.+.++.
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cccCCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 237899999954332 2699999999999999877778999999975441 1 122688999998876
Q ss_pred cchh
Q 003975 498 TAWV 501 (782)
Q Consensus 498 ~~~~ 501 (782)
+..+
T Consensus 278 D~Vl 281 (800)
T KOG2059|consen 278 DHVL 281 (800)
T ss_pred ceec
Confidence 5543
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=176.19 Aligned_cols=121 Identities=62% Similarity=1.053 Sum_probs=105.0
Q ss_pred EEEEEEEEeec---CCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 368 TLELGILSAKN---LMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 368 ~l~v~v~~a~~---L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
.|+|+|++|+| |+.+| +.|+ ||||+|++|+++.||++++++.||+|||+|.|.+.++...|.|+|||++.++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d---~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKD---GRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccc---cCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 38899999999 66654 4477 99999999999999999999999999999999999888899999999987521
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHL 491 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l 491 (782)
.+...+|++||++.|+|+.+..+....+||+|....+++.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 111237999999999999999999999999999877777788899986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=174.28 Aligned_cols=117 Identities=23% Similarity=0.415 Sum_probs=102.3
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCC-CCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~-t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
|.|+|+|++|++|+..+ .|+ ||||+|.+|++++||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~~----~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG----LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC----CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 79999999999987653 256 99999999999999999976 79999999999999876678999999999887
Q ss_pred CCCCCCCccEEEEEEcc-cccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLS-TLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.|+|. .+..++..+.||+|... ++..+.|+|+|+++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 57888888999999753 344567999999864
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=170.04 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=102.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|.|+|++|++|+..+ .|++||||++++++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999988777 799999999999999999999876 78999999999999753 46799999999998 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 118 VGRVSLDLS-QVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 118 lG~~~v~l~-~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
||++.+++. .+..+. ..++||+|.+.++.. ..|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~-~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGE-----TLDDWYSLSGKQGED-KEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCC-----CccccEeCcCccCCC-CceEEEEEEeC
Confidence 999999996 455442 367999999877654 67999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=171.27 Aligned_cols=121 Identities=72% Similarity=1.147 Sum_probs=107.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEE
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~ 120 (782)
+|.|+|++|++|+.. .+||||++.+++++.+|+++++|.||+|||+|.|.+.......|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999887 7899999999999999999999999999999999987766789999999999778999999
Q ss_pred EEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 121 ~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+.++++++..+...++....+||+|++..+. ...|+|++++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~-~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG-RVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCC-ccceEEEEEEEecC
Confidence 9999999987655555567899999987763 37899999999973
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-20 Score=170.52 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=100.1
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC------CCceEEEEEEeCCcC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD------PCTVITIGVFDNCYV 441 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~------~~~~l~i~v~d~~~~ 441 (782)
++|+|++|+||+.++. .|. ||||+|+++++++||++++++.||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~---~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGK---SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCC---CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 5799999999998753 356 999999999999999999999999999999999976 367899999999987
Q ss_pred CCCCCCCCCCccEEEEEEccccc--CCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLE--TDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 6 7999999999999987 56778899999864433334579999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=168.96 Aligned_cols=118 Identities=31% Similarity=0.518 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-----CCCCeEEEEEEeCCCC-CC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-----LQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-----~~~~~L~i~V~d~d~~-~d 115 (782)
++|+|++|+||+..+..|.+||||+|++++++++|++++++.||+|||+|.|.+.. .....|.|+|||++.. +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999999999999999999999999999999999999999999866 3567899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEE
Q 003975 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAV 162 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~ 162 (782)
++||++.++|.++.... .....+||+|.+..+.. ...|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999997422 12367999998765432 3689999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=171.23 Aligned_cols=122 Identities=29% Similarity=0.399 Sum_probs=106.8
Q ss_pred eEEEEEEEEeecCCCCccC---------------------------CCCCC-CcEEEEEECCEE-EeecccCCCCCCeec
Q 003975 367 GTLELGILSAKNLMQMKSK---------------------------DGKLT-DAYCVAKYGNKW-IRTRTILDTLAPRWN 417 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~-dpyv~v~~~~~~-~rT~~~~~t~~P~wn 417 (782)
|.|.|+|++|++|+++|.. .+.|+ ||||+|++++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999999831 13566 999999998754 799999999999999
Q ss_pred cEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 418 EQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 418 e~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|.|.|.+.++.+.|.|+|+|++.+ ++++||++.|+++++..+...++||+|.....++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~-------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVV-------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCc-------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999988888999999999876 46899999999999999988999999987555555557899999987
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=162.98 Aligned_cols=118 Identities=27% Similarity=0.362 Sum_probs=104.4
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
.|+|+|++|+||+..|.. |. ||||++++++ +.++|+++.++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~d~~---g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRG---GTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCC---CCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999988643 56 9999999987 679999999999999999999999887889999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++|+++..+.....|++|.+.. +.+..|+|++.++|+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 ---TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred ---CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999998899999997532 335689999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-20 Score=202.19 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=157.6
Q ss_pred CCCceeehhhchhhHHHHHH-HH-H--HHHHHhhccccccCchhhHHHHHHHHHHHHccchhHHHHHHHHHHHHH----h
Q 003975 559 VDYHMWSLRKCKANFQRIVE-LL-S--AICRWFNDICTWRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGM----W 630 (782)
Q Consensus 559 ~~~~~~s~~~~~~n~~rl~~-~~-~--~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~----~ 630 (782)
++...||..++++|++|+.. ++ . .+.+++.++.+|++|.||++||++|++ +|+.++++|+++..|+++++ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67889999999999999954 32 2 899999999999999999999999999 68889999999988887777 8
Q ss_pred hcccCCCCCCCCCcc-----------------cchhhhcchhhhhccc----------------------CCCccc-ccc
Q 003975 631 NYRLRPRHPPHVDAK-----------------LSQAINAHLDELVKEF----------------------DTSDEL-DEE 670 (782)
Q Consensus 631 ~~~~~~~~~~~~~~~-----------------~s~~~~~~~~~~~~~~----------------------~~~~~~-~~e 670 (782)
.++|+|.+++.+|.+ ++++++.+++|.+|+| .++++. +++
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~ 241 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEED 241 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccC
Confidence 888998887777644 4456677888998888 111221 111
Q ss_pred cCCCCCCC------------------ChhHHHH-HHHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChh--------hH
Q 003975 671 FDSFPTSR------------------PSDTVRM-RYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLR--------AT 723 (782)
Q Consensus 671 ~~~~~~~~------------------~~~~l~~-~~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~--------~s 723 (782)
..+++... ..+..++ .-.++-..+..+|++|++|+|.+||+-|+|+.+.|| +.
T Consensus 242 ~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa 321 (642)
T PF11696_consen 242 SEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLA 321 (642)
T ss_pred CCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHH
Confidence 11111100 0011111 122344568889999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCCCCCCCCchhhhhcc
Q 003975 724 FIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773 (782)
Q Consensus 724 ~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~~~~~~~~~~~~~~r 773 (782)
.+++.+++++.++..++-.|.+.|++|+. +|.+++....++||+|
T Consensus 322 ~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~-----FFGdPiI~r~~~~Lnr 366 (642)
T PF11696_consen 322 AILAPLLLASLFVSSYMFVKGTTFGFGFG-----FFGDPIITRGIDYLNR 366 (642)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHH-----hhccHHHHHHHHHHhc
Confidence 67778888888888999999999999999 6776665555555554
|
|
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=161.55 Aligned_cols=118 Identities=25% Similarity=0.451 Sum_probs=101.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|+|.|++|+||++++. ..|. ||||.|.++++ .++|+++++|.||+|||.|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6799999999998752 2356 99999999875 68999999999999999999999876689999999999876
Q ss_pred CCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|+++..+...+.||+|......+ +..|+|||+++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 8999999999999999888889999998654433 346999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=161.18 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=98.1
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-----
Q 003975 42 LCVNVVKARN---LPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG----- 113 (782)
Q Consensus 42 L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~----- 113 (782)
|.|+|++|++ |+.+|..|++||||++++++++.||+++++++||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 7899999999 88999999999999999999999999999999999999999999764 46899999999875
Q ss_pred --CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEE
Q 003975 114 --KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIML 160 (782)
Q Consensus 114 --~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l 160 (782)
+|++||++.++|+++..+. ....||+|.+.++.. +..|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998753 367899999765322 24677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=163.53 Aligned_cols=120 Identities=33% Similarity=0.440 Sum_probs=103.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC---CCCeEEEEEEeCCCC--CCc
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL---QSSLLEVTVKDKDIG--KDD 116 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~~--~d~ 116 (782)
|.|+|++|++|+..+..|.+||||+|.+++++++|++++++.||+|||+|.|.+.+. ....|.|+|||++.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 799999999999999889999999999999999999999999999999999998643 246899999999876 799
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+||++.++++++... +....+||+|+.........|+|++++++.
T Consensus 82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999732 234679999997643333689999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=166.04 Aligned_cols=125 Identities=29% Similarity=0.471 Sum_probs=107.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
.|.|+|++|++|+..|..|.+||||++.+++++.+|+++.+ |.||+|||+|.|.+.+.....|.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999977 69999999999999766567899999999987 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCC-----C-cccceEEEEEEEecc
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-----D-QTTKGEIMLAVWMGT 166 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-----~-~~~~G~l~l~~~~~~ 166 (782)
|++.++|.++..+.. ......+||+|++..+ + ....|+|++.+.+..
T Consensus 81 G~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999999999976421 2335789999998764 1 136799999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-19 Score=162.96 Aligned_cols=124 Identities=27% Similarity=0.435 Sum_probs=106.0
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~ 114 (782)
.+..|.|+|+|++|++|+..|..|.+||||++.++++.++|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 456799999999999999999999999999999999999999999999999999999999877678999999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++||++.+++.++............+|..|.. . ..|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~---~--~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHE---V--PTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccc---c--cceeEEEEEEe
Confidence 999999999999998733222223446666642 2 37999999865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=165.62 Aligned_cols=116 Identities=30% Similarity=0.460 Sum_probs=97.2
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
..|.|+|.|.+|.||...|.. ++ ||||++.+|+++.||+++++++||+|||.|+|.+.++...|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~---~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFL---GSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeeeccc---cCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 469999999999999988753 45 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
.||++|.|.|+|..+..... .|+ |....+.|.. -|++.++.
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~-~~~v~~s~ 120 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTA-IGKVLLSR 120 (168)
T ss_pred -----cccccceeeeccHHHHHHhh--hhc-cccccCCCcE-eeEEEecc
Confidence 99999999999999977653 344 4433333332 25555554
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-19 Score=159.93 Aligned_cols=118 Identities=36% Similarity=0.546 Sum_probs=105.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
+|.|+|++|++|+..|..|.+||||++.+++ ..++|+++.+|.||+|||+|.|.+... ...|.|+|||++.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999999999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
|++.+++.++..+.+ ...|++|.+.++.. ..|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~-~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDE-DLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCcc-CceEEEEEEEEC
Confidence 999999999987543 56899998876533 589999999775
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=161.91 Aligned_cols=118 Identities=28% Similarity=0.458 Sum_probs=102.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCc
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCY 440 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~ 440 (782)
....|.|+|+|++|+||++.+.. |. ||||++.++++.+||++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~---g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCC---CCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 56789999999999999988643 66 9999999999999999999999999999999999875 4689999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccC-----CceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLET-----DRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++ +|++||++.|+|+++.. ......|.++. + ...|+|+|++.|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 76 89999999999999976 44556777764 2 335999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-19 Score=160.39 Aligned_cols=117 Identities=32% Similarity=0.455 Sum_probs=102.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|.|.|+|++|++|+..+..|.+||||+|.+++++++|+++.+ +.||+|||.|.|.+.......|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 579999999999999999999999999999999999999865 7899999999999986556889999999987778999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+. ...+|++|.... . ..|+|++++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~-~--~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG-R--YAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC-c--EeeEEEEEEEC
Confidence 99999999987643 257899998643 3 48999999865
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=160.51 Aligned_cols=111 Identities=34% Similarity=0.565 Sum_probs=97.1
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEe---c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSK---E 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~---~ 96 (782)
|...+++.|+ .+.|.|+|++|++|+..+ .|.+||||++++.+ .+++|++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 3457888888 478999999999999999 89999999999963 468999999999999999999986 2
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+.....|+|+|||++.. ++++||++.++|+++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 45678999999999998 8999999999999998653 25789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-19 Score=163.43 Aligned_cols=94 Identities=39% Similarity=0.563 Sum_probs=89.3
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
...|.|+|+|++|.+|..+|..+++||||.+.+|+++.||++++++.||+|||+|.|.+.+. ...|.++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 45689999999999999999889999999999999999999999999999999999999885 68899999999999 99
Q ss_pred ceeEEEEEEccccCCC
Q 003975 116 DFVGRVSLDLSQVPLR 131 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~ 131 (782)
|+||.++|+|..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999999875
|
|
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=157.58 Aligned_cols=119 Identities=26% Similarity=0.465 Sum_probs=100.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~~~~~~~ 444 (782)
..|+|+|++|+||+..+ .+||||+|.+++. ..||++ +++.||.|||.|.|++..+. ..++|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~~-----~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~-- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH-----VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS-- 75 (126)
T ss_pred eEEEEEEEEeeCCCCCC-----CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC--
Confidence 47999999999998632 2399999999884 478987 46899999999999976553 57999999998876
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.|+|+++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 ----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998899999998754434556799999999854
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=159.41 Aligned_cols=115 Identities=30% Similarity=0.538 Sum_probs=99.1
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCC-CCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~-t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~ 443 (782)
|.|+|.|++|+||+..+.. +. ||||+++++++..+|+++.+ +.||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~---~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKL---DKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcC---CCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987643 56 99999999999999999865 78999999999999874 57899999999863
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|++||++.++++++..+....+||+|.. ++ +..|+|+|++.|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 48999999999999987777899999974 22 457999999865
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=155.33 Aligned_cols=113 Identities=39% Similarity=0.599 Sum_probs=101.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
+|+|+|++|++|+..+..|.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999999999999999999999999999876678999999999988 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 120 ~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
++.+++.++..+. ....|++|++. .|+|++.+.|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~------~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG------EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC------CcEEEEEEEe
Confidence 9999999998653 36789999863 4888887755
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=154.92 Aligned_cols=112 Identities=28% Similarity=0.443 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~~~ 445 (782)
.++|.|++|+||+..+.. +. ||||+++++++..+|+++++|.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDN---GLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCCCC---CCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 378999999999988643 56 9999999999999999999999999999999999876 679999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|+++..+.....|++|.. ..|+|++.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 89999999999999999889999999974 14999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=152.53 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=89.6
Q ss_pred ceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEeeeccccCCCCCccccEEEEEec--cCCCC
Q 003975 28 KTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN----YKGITKHLEKNQNPVWNQIFAFSKE--RLQSS 101 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~ 101 (782)
.+++.|+ +..+.|.|+|++|++|+ . .|.+||||++.+.. .+.+|+++++|+||+|||+|.|.+. ++...
T Consensus 4 ~fsL~Y~--~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYD--KQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEc--CcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 3445554 46789999999999999 3 46799999999963 4789999999999999999999985 46678
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 102 LLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 102 ~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.|.|.|||+|.+ ++++||++.++++++.... ...+|.+|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-----~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMML-----GAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCc-----cccchhcC
Confidence 899999999999 9999999999999875432 24567654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=156.94 Aligned_cols=122 Identities=28% Similarity=0.422 Sum_probs=105.6
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 003975 40 HYLCVNVVKARNLPVMDV--SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~ 116 (782)
|.|.|+|++|++|+..+. .+.+||||+|.+++++.+|++++++.||+|||+|.|.+.......|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 679999999999999988 89999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC--cccceEEEEEEE
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD--QTTKGEIMLAVW 163 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~--~~~~G~l~l~~~ 163 (782)
+||++.+++.++.... ......+||+|.+.... ....|+|++.+.
T Consensus 81 ~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEE
Confidence 9999999999997521 12236799999876422 236899999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=151.84 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=86.8
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC----EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN----KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGV 435 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~----~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v 435 (782)
.+..|.|.|+|++|+||+ . + +++||||++++.. .+.+|++.++|+||+|||.|.|.|.. +...|.|+|
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 345689999999999998 2 2 2359999999953 47899999999999999999999874 366899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
||+|.++ ++++||++.++++++..+....+|.+|
T Consensus 85 ~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 9999987 899999999999998666666788764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=154.47 Aligned_cols=117 Identities=26% Similarity=0.462 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
|.|+|+|++|+||+.++.. +. ||||+|++++..++|++++++.||.|||+|.|++.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~---~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIG---GKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCC---CCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987643 55 9999999999999999999999999999999999876789999999998765
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++++||++.+++.++..+. ..||+|...... .+..|+|+++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEEEEEe
Confidence 8999999999999998765 689999864322 2346999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=156.89 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=99.0
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~ 401 (782)
+|+|++++.+. +..|.|.|.|++|+||++.+. ..+. ||||+|++. ..
T Consensus 1 ~G~i~~sl~y~-------------------------~~~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~ 53 (125)
T cd04029 1 SGEILFSLSYD-------------------------YKTQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQS 53 (125)
T ss_pred CcEEEEEEEEE-------------------------CCCCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCcccc
Confidence 38888988862 345799999999999998763 2356 999999984 23
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
+.||++++++.||+|||+|.|++.. ....|.|+|||++.++ ++++||.+.|+|.++......+.||||.
T Consensus 54 ~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 54 KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 5899999999999999999999875 2568999999999876 8999999999999999988899999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=153.65 Aligned_cols=117 Identities=36% Similarity=0.623 Sum_probs=104.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
|.|.|+|++|++|+..+..+.+||||++.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 67999999999999999889999999999999889999999999999999999998764 57899999999987 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+ ..+||+|.+..+.....|+|++++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998754 35899998776544468999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=157.13 Aligned_cols=119 Identities=25% Similarity=0.406 Sum_probs=100.2
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEEEeCCcCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGVFDNCYVN 442 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~~~ 442 (782)
.|+|+|++|+||++.+. .|. ||||++.++++..||+++.++.||+|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~d~---~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG---QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCC---CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 48999999999998764 356 9999999999999999999999999999999999864 257999999988652
Q ss_pred CCCCCCCCCccEEEEEEccccc-CCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLE-TDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.+|++||++.|+++++. .+.....||+|...... .+..|+|+|++.|
T Consensus 78 -----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 125 (127)
T cd04022 78 -----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLF-SRVRGEIGLKVYI 125 (127)
T ss_pred -----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCC-CCccEEEEEEEEE
Confidence 16899999999999997 56777899999864322 2347999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=155.83 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=100.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECC--EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
|.|+|++|+||+. . .|. ||||++++++ +.+||++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~--~---~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE--A---AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC--C---CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999986 2 256 9999999974 679999999999999999999999765678999999999865
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.++++++..+.....||+|......+....|+|++++.|..
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999999888788999998643333445799999999854
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=157.57 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=89.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEE-eCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVF-DNC 439 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~-d~~ 439 (782)
|.|.|+|++|+||++.+. ..|. ||||++++. + .+.||+++++|+||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~~--~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKPG--SKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCcccC--CCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 699999999999998642 2355 999999993 2 378999999999999999999999866779999999 566
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeec
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLL 478 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 478 (782)
.++ ++++||.+.|+|+++..+.....||+|.+.
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 554 889999999999999888888999999863
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=152.40 Aligned_cols=102 Identities=30% Similarity=0.454 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|+.|.|+|++|++|+..+ ..||||++++|+++.+|++.++ .||+|||+|.|.+.+.. ..|.|+|||++...|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997544 5699999999999999999988 59999999999998754 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
|++.++|.++..+ +.++.++||+|+..
T Consensus 76 G~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccC---CCCCCCccEecChH
Confidence 9999999999876 34567899999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-18 Score=157.57 Aligned_cols=123 Identities=29% Similarity=0.441 Sum_probs=105.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
.|+|+|++|++|+..|..|.+||||+|.+++. +.+|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 37999999999999998899999999999764 57999999999999999999998653 56799999999988
Q ss_pred -CCceeEEEEEEccccCCCCCCC-CCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPD-SPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~-~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
++++||++.+++.++....+.+ .....+||+|++..+.....|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999998764432 34577999999765443468999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=157.59 Aligned_cols=118 Identities=27% Similarity=0.278 Sum_probs=100.4
Q ss_pred cccCCCceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEe
Q 003975 22 RYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSK 95 (782)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~ 95 (782)
+..|..++++.|+ .+.|.|+|++|+||+..+ ..|.+||||++++.. .++||+++++|+||+|||+|.|.+
T Consensus 15 ~~~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 15 PSMGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred CCcceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 3467788888884 478999999999999874 578999999999953 368999999999999999999999
Q ss_pred ccCCCCeEEEEEE-eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 96 ERLQSSLLEVTVK-DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 96 ~~~~~~~L~i~V~-d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
. .....|.|+|| |++.+ ++++||++.|+|+++..+. ....||+|.+..
T Consensus 91 ~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 91 S-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred c-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 8 56889999999 57777 8999999999999986543 257899998764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=156.27 Aligned_cols=115 Identities=30% Similarity=0.482 Sum_probs=98.6
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~-- 96 (782)
|..++++.|+. ..+.|.|+|++|+||+.+|.. |.+||||++++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 55678888866 457899999999999999975 8999999999952 3579999999999999999999986
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
++....|.|+|||++.. ++++||++.++|+++.... ....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 34567899999999988 9999999999999996552 357899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=154.76 Aligned_cols=99 Identities=25% Similarity=0.371 Sum_probs=87.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~ 436 (782)
|.|.|.|++|+||++++ . +. ||||++++. ..+.||++++++.||+|||+|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~---~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-G---SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCCC-C---CCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 69999999999999886 3 56 999999996 347899999999999999999999832 3569999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
|++.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 899999999999999988888999998
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=156.41 Aligned_cols=121 Identities=23% Similarity=0.418 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~~~~ 444 (782)
|.|+|.|++|+||+..+.. +.+. ||||++.++++.++|++++++.||.|||.|.|++.+ ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 7899999999999987641 1356 999999999999999999999999999999999987 4679999999999765
Q ss_pred CCCCCCCccEEEEEEccccc---CCceEEEEEeeeecCC-CCCCcCcEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLE---TDRIYTHYYPLLLLTP-SGLKNNGELHLALR 494 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~-~g~~~~G~i~l~~~ 494 (782)
+|++||++.|+|.++. .......||+|..... ......|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 7899999999999997 3345689999987533 22345799999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-18 Score=155.50 Aligned_cols=117 Identities=27% Similarity=0.342 Sum_probs=99.8
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~- 97 (782)
|..++++.|+.. .+.|.|+|++|+||+.++.. |.+||||++++.. .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~--~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFR--TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 667888888874 46999999999999999875 9999999999953 36799999999999999999999853
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+....|.+.|||++.+ ++++||++.|+|+++..... .+...+||+|
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l 127 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPL 127 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEEC
Confidence 4467999999999988 99999999999999965432 2357799998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=152.16 Aligned_cols=117 Identities=24% Similarity=0.373 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 42 LCVNVVKARNLPVMD-VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
|.|+|.+|+||+..+ ..|.+||||+|.++++ .++|+++++|.||+|||+|.|.+.+. ...|.|.|||++.. +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4688999999999875 68999999999999999999999753 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|.+.++++++..+. ....||+|+.........|+|++++.+
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999998643 257899998754332358999998753
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=153.37 Aligned_cols=116 Identities=30% Similarity=0.459 Sum_probs=100.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVGR 120 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG~ 120 (782)
|.|+|++|++|+..+..|.+||||+|++++++.+|+++++|.||+|||+|.|.+.......|.|+|||++.. ++++||+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 799999999999999889999999999999999999999999999999999999776567899999999988 8999999
Q ss_pred EEEEccccCCCCCCCCCCCCEEEEeccCCCC----cccceEEEEEE
Q 003975 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD----QTTKGEIMLAV 162 (782)
Q Consensus 121 ~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~----~~~~G~l~l~~ 162 (782)
+.+++.++.... ....||.|...... ....|.|.+.+
T Consensus 82 ~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 82 VVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999997643 25689999864322 12579988875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=155.25 Aligned_cols=116 Identities=18% Similarity=0.344 Sum_probs=97.9
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~ 401 (782)
+|+|++++.+.. ..+.|.|+|++|+||++++. ..|. ||||++++. ..
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~vi~a~~L~~~d~--~~g~~dpyVkv~l~p~~~~~~ 53 (125)
T cd08393 1 QGSVQFALDYDP-------------------------KLRELHVHVIQCQDLAAADP--KKQRSDPYVKTYLLPDKSNRG 53 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCEEEEEEEEeCCCCCcCC--CCCCCCcEEEEEEEcCCCccc
Confidence 388888888632 34699999999999998863 2255 999999994 23
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
+.||++++++.||+|||.|.|++.. ....|.|+|||++.++ ++++||.+.|+|.++..+.....||+|.
T Consensus 54 ~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 54 KRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLG------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCC------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 5899999999999999999999864 2468999999999876 8999999999999998887788999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=152.51 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 40 HYLCVNVVKARNLPVMDV------SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
|.|.|+|++|++|+..|. .|.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 37899999999999999999999999999999999999866678999999999887
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEE
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVW 163 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~ 163 (782)
++++||++.+++.++..+. ...+||+|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC-----CCceEEEEEe
Confidence 8999999999999998643 36799999864 2688988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-18 Score=153.25 Aligned_cols=115 Identities=29% Similarity=0.519 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCccCC---CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKSKD---GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~---~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~ 441 (782)
|.|+|+|++|+||+..+... ..|. ||||+|+++++.++|++++++.||+|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999999876421 1355 999999999999999999999999999999999975 467999999999853
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALR 494 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.++|+++..+.....||+|... ..|+|+++++
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~ 120 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLE 120 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEe
Confidence 689999999999999888888999999742 4599999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=149.63 Aligned_cols=102 Identities=29% Similarity=0.464 Sum_probs=92.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRV 121 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~ 121 (782)
|.|+|++|++|+..+..+.+||||++++++++++|+++++|.||+|||+|.|.+.+...+.|.|+|+|++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 79999999999999888999999999999999999999999999999999999987667899999999986 8999999
Q ss_pred EEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 122 SLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 122 ~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
.++|.++.... ....++||+|++.
T Consensus 80 ~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccc---cceeeeeEecCCC
Confidence 99999998653 2347899999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=157.28 Aligned_cols=120 Identities=28% Similarity=0.444 Sum_probs=102.7
Q ss_pred eeEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCe-EeeeccccCCCCCcc
Q 003975 39 MHYLCVNVVKARNLPVMD------------------------------VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVW 87 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~W 87 (782)
-|.|.|+|.+|++|+++| ..|.+||||+|.+++. ..+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 3577899999999985 479999999999999
Q ss_pred ccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEEEe
Q 003975 88 NQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAVWM 164 (782)
Q Consensus 88 ne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~~~ 164 (782)
||+|.|.+... .+.|.|.|||.+..++++||++.++++++..+. ...+|++|.+.++.. ...|+|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998654 468999999999887789999999999998653 367999999876554 246899999877
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=151.80 Aligned_cols=113 Identities=33% Similarity=0.468 Sum_probs=98.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|.|+|++|++|+..+..|.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999998889999999999963 57899999999999999999999876556789999999998889999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+. ....|++|.++. .|+|.+.+.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCCC-----CceEEEEEEe
Confidence 99999999998653 367899998742 6888887754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=153.33 Aligned_cols=118 Identities=25% Similarity=0.410 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~~~ 445 (782)
+|+|+|++|+||+.++.. +. ||||+|++++..++|++++++.||+|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~~---~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRN---GTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCC---CCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 489999999999987643 55 9999999999999999999999999999999999875 568999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCC---CCCcCcEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPS---GLKNNGELHLALR 494 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---g~~~~G~i~l~~~ 494 (782)
++++||.+.++|+++..+.....||+|...... ..+..|.|++.|+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 799999999999999877777899999864432 2234788988763
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=154.75 Aligned_cols=118 Identities=25% Similarity=0.395 Sum_probs=99.3
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-------EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~ 439 (782)
.|+|+|++|+||+..+.. +. ||||++++++. ..+|+++++|.||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~---~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIF---GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccCC---CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999987643 56 99999999654 57999999999999999999999766678999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCce------EEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRI------YTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.++ +|++||++.++++++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 876 89999999999999976543 45999998643333 446999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=9e-18 Score=150.92 Aligned_cols=102 Identities=31% Similarity=0.440 Sum_probs=87.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE-C----C--eEeeeccccCCCCCccccEEEEEecc---CCCCeEEEEEEeCC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-G----N--YKGITKHLEKNQNPVWNQIFAFSKER---LQSSLLEVTVKDKD 111 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~-~----~--~~~kT~~i~~t~nP~Wne~f~f~~~~---~~~~~L~i~V~d~d 111 (782)
|+|+|++|++|+..+ .|.+||||+|++ | . ++++|+++.+|+||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 799999999999888 599999999998 3 2 35789999999999999999999863 34567999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 112 IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 112 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.. ++++||++.+++.++..+. ....|++|+..-
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~~ 114 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRRI 114 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCcc
Confidence 77 8999999999999998654 267899997653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=150.75 Aligned_cols=112 Identities=25% Similarity=0.401 Sum_probs=97.0
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~ 443 (782)
|+|+|++|+||+..+. .+. ||||+++++ ++..||++++++.||+|||.|.|.+..+ ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~~---~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDL---LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCC---CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 7899999999998764 356 999999996 3679999999999999999999999764 45799999999864
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++++++..+.....|++|.. ...|+|++++.++
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLLE 118 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEee
Confidence 68999999999999999999999999974 2259999988763
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=150.01 Aligned_cols=116 Identities=31% Similarity=0.489 Sum_probs=98.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|.|.|++|+||++++.. |. ||||++.++++ ..||++++++.||.|||.|.|.+......|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~~---g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDIT---GSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCCCC---CCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999988643 56 99999999876 47999999999999999999999877789999999999876
Q ss_pred CCCCCccEEEEEEcccccCC-ceEEEEEeeeecCCCCCCcCcEEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLETD-RIYTHYYPLLLLTPSGLKNNGELHLALR 494 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.+++..+..+ ...+.|++|......+ ...|+|+++++
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999998754 3478999998654332 34699999864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=152.00 Aligned_cols=122 Identities=29% Similarity=0.463 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC---------CCCeEEEEEEeC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL---------QSSLLEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~---------~~~~L~i~V~d~ 110 (782)
+.|+|+|++|++|+..|..|.+||||+|.+++++++|+++++|.||+|||+|.|.+... ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999975322 135799999999
Q ss_pred CCC-CCceeEEEEE-EccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 111 DIG-KDDFVGRVSL-DLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 111 d~~-~d~~lG~~~v-~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+.. +|++||++.+ ++..+... .......+|++|.... . ..|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~-~--~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG-Q--SAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC-C--chhheeEEeEEEE
Confidence 988 8999999997 44444321 1334578999998543 3 4899999997753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=151.54 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=97.2
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~- 97 (782)
|..++++.|+ +..+.|.|+|++|+||+..+. .|.+||||++++.. .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~--~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYD--YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEE--CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 4456777775 466799999999999998875 58999999999952 35799999999999999999999863
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 4567899999999988 9999999999999997753 267899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=148.95 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=86.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|.|.|.|++|++|+.++ +.||||+|++|+++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~----- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI----- 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-----
Confidence 58999999999997532 2399999999999999999988 499999999999988877899999999854
Q ss_pred CCCCCccEEEEEEcccccCCceE--EEEEeeee
Q 003975 447 DAKDQRIGKVRIRLSTLETDRIY--THYYPLLL 477 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~ 477 (782)
.|++||++.|+|+++..+... ..||+|..
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 799999999999999876555 89999985
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=148.62 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=98.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~ 116 (782)
...|.|+|++|+||+.. +.+||||+|.+++. ..+|+++ ++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 34699999999999875 47899999999884 4789874 689999999999987554446799999999988 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC-CcccceEEEEEEEec
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-DQTTKGEIMLAVWMG 165 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-~~~~~G~l~l~~~~~ 165 (782)
+||++.++|.++..+. ....||+|....+ .....|+|+++++|.
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999987643 3678999988653 123579999999886
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=148.61 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=101.6
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
..+|+|+|++|++|+..|..|.+||||++.++++..+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 468999999999999999899999999999999999999999999999999999988664 6789999999988888999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCC--CcccceEEEEEEEec
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG--DQTTKGEIMLAVWMG 165 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g--~~~~~G~l~l~~~~~ 165 (782)
|++.+++.++.. ...+|++|..... .....|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999999987642 2458899974321 123689999998654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=151.38 Aligned_cols=115 Identities=18% Similarity=0.343 Sum_probs=99.5
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~ 403 (782)
+|+|++++.+. +..|.|.|+|++|+||+..+.. |. ||||++.++ .+..
T Consensus 2 ~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d~~---g~~dpyv~v~l~~~~~~~~ 53 (124)
T cd08387 2 RGELHFSLEYD-------------------------KDMGILNVKLIQARNLQPRDFS---GTADPYCKVRLLPDRSNTK 53 (124)
T ss_pred CCEEEEEEEEC-------------------------CCCCEEEEEEEEeeCCCCCCCC---CCCCCeEEEEEecCCCCcE
Confidence 48899988863 3457999999999999987643 56 999999983 3569
Q ss_pred eecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||++++++.||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+...+.||+|.
T Consensus 54 kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 54 QSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999998753 468999999999876 8999999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=150.62 Aligned_cols=114 Identities=34% Similarity=0.592 Sum_probs=99.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC--------
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-------- 112 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~-------- 112 (782)
.|.|+|++|++|+..|..|.+||||+++++++.++|+++++|.||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999899999999999999999999999999999999999998654 5689999999985
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEE
Q 003975 113 ----GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAV 162 (782)
Q Consensus 113 ----~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~ 162 (782)
.++++||++.+++.++... ..+||.|+...+...+.|+|++++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2689999999999987432 569999998765555799999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=148.49 Aligned_cols=117 Identities=30% Similarity=0.452 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|+..|..|.+||||++++++. ..+|+++++|.||+|||.|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999875 47999999999999999999998653 47899999999988 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEE
Q 003975 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVW 163 (782)
Q Consensus 120 ~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~ 163 (782)
++.+++.++..... ...+|++|.+..+.....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999988864321 35789999875433336899998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=148.79 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=99.4
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
.+.|+|+|++|+||+..+. .|. ||||++.++++.+||++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~---~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS---GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC---CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 3689999999999998764 356 999999999999999999999999999999999988888999999999865
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCC-CCCCcCcEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP-SGLKNNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.+++..+.. ...+||+|..... ...+..|+|.+++.+
T Consensus 76 ----~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 76 ----CDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ----CCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 58999999999998653 3368899974222 233457999999865
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=149.44 Aligned_cols=119 Identities=25% Similarity=0.449 Sum_probs=101.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCcee
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEIL 282 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~i 282 (782)
+|.|+|++|++|+.. .+||||++.++++..+|+++++ +.||+|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 389999999999887 6899999999999999999987 99999999999998877788999999999876 78999
Q ss_pred EEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEe
Q 003975 283 GRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCL 337 (782)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~ 337 (782)
|++.++++++..+...+.....+||+|.+.. ..+.+|+|++++.|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----------~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----------GGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC----------CCccceEEEEEEEe
Confidence 9999999998754312344578999998763 23567999999886
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-17 Score=149.64 Aligned_cols=117 Identities=21% Similarity=0.362 Sum_probs=100.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN--YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
|.|+|++|++|+. ..|.+||||++.+++ ++++|+++.+|.||+|||+|.|.+.. ....|.|+|||++.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999988 678999999999974 57899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCC-cccceEEEEEEEecc
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD-QTTKGEIMLAVWMGT 166 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~-~~~~G~l~l~~~~~~ 166 (782)
|++.+++.++..... ..+|++|....+. ....|+|.+.+.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999987543 4689999876432 236899999998864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=149.65 Aligned_cols=115 Identities=33% Similarity=0.464 Sum_probs=98.6
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEecc--CC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKER--LQ 99 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~~--~~ 99 (782)
|...+++.|+- ..+.|.|+|++|++|+..+..|.+||||++++. ..+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 44566666655 678999999999999999999999999999994 256899999999999999999999863 34
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
...|.|+|||++.. ++++||++.++++++..+. ....||+|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 57899999999988 8999999999999998653 367899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=149.86 Aligned_cols=115 Identities=37% Similarity=0.507 Sum_probs=98.5
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEecc--CC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKER--LQ 99 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~--~~ 99 (782)
|...+++.|+. ..+.|.|+|++|++|+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 45567777766 4578999999999999999889999999999953 46799999999999999999999853 34
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
...|.|+|||++.. ++++||++.+++.++..+. ...+|++|+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 57899999999988 8999999999999987643 367999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=148.99 Aligned_cols=103 Identities=27% Similarity=0.352 Sum_probs=90.2
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC---EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEe
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFD 437 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d 437 (782)
..|.|+|+|++|+||+..+.. +. ||||++.+.+ +.+||++++++.||+|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~---~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMG---GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCC---CCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 347999999999999987643 56 9999999843 568999999999999999999998752 4689999999
Q ss_pred CCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
++.++ +|++||++.++|+++..+...++|++|.
T Consensus 91 ~d~~~------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 91 FDRFS------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCC------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99876 8899999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=146.68 Aligned_cols=105 Identities=27% Similarity=0.431 Sum_probs=92.5
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC----CCCeEEEEEEeCCCC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL----QSSLLEVTVKDKDIG 113 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~----~~~~L~i~V~d~d~~ 113 (782)
+.+.|+|+|++|++|+ .|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4678999999999998 57899999999999999999999999999999999997532 356899999999988
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+|++||++.++|+++.... +.....+|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8999999999999998753 34578899999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=148.03 Aligned_cols=106 Identities=23% Similarity=0.281 Sum_probs=90.2
Q ss_pred EEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 003975 202 YYLRVFVFEAQDLVPSDKG-RAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 273 (782)
+.|.|+|++|+||++.+.. |.+||||++++.. .+.||+++++ +.||+|||+|.|.+... ....|.|.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 4599999999999999875 8999999999953 3678999886 99999999999998543 346899999999
Q ss_pred cCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 274 IRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 274 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
+..+++++||++.|+|+++... +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~--~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE--DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC--CCCccccceEECc
Confidence 9989999999999999998643 3345688999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=152.79 Aligned_cols=102 Identities=28% Similarity=0.475 Sum_probs=88.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec---------------cCCCC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE---------------RLQSS 101 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~---------------~~~~~ 101 (782)
|.|+|++|++|+. .+|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7999999999998 578999999999976 5689999999999999999999984 22346
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 102 LLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 102 ~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.|.|.|||++.. +|++||++.|++.++.... .....||+|.+..
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 799999999988 9999999999999998651 1357899998764
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=149.44 Aligned_cols=118 Identities=31% Similarity=0.378 Sum_probs=97.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEE-ec--
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~-~~-- 96 (782)
+|..++++.|+. ..+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||+++++|.||+|||+|.|. +.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 355678888777 457999999999999998876 8999999999963 46799999999999999999993 43
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|+|||++.. +|++||++.++|+++...... ....|.+|+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 33456799999999988 999999999999999765221 266788875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=146.77 Aligned_cols=100 Identities=16% Similarity=0.331 Sum_probs=86.5
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-C----C--EEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEE
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-G----N--KWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGV 435 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-~----~--~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v 435 (782)
.|+|+|++|+||+..+ .|. ||||+|++ | . ++++|+++.+|+||+|||.|+|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 4899999999999864 266 99999997 3 2 357999999999999999999999742 34799999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||++..+ +|++||++.|+|+++..++....|++|..
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 79999999999999999999999999974
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=149.44 Aligned_cols=114 Identities=41% Similarity=0.613 Sum_probs=95.3
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
|...+++.|+- ..+.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 44566666665 5578999999999999999889999999999964 57899999999999999999998532
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
.....|.|+|||++.. ++++||++.++|++.... ....||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 3467899999999988 899999999999993322 146899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=149.38 Aligned_cols=119 Identities=32% Similarity=0.333 Sum_probs=99.8
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC--EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVN 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~ 442 (782)
+|.|+|+|++|+||+..+. ..+. ||||++++++ +..+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 4899999999999996542 2355 9999999987 789999999999999999999999866789999999998765
Q ss_pred CCCCCCCCCccEEEEEEcccccCCceEEE-EEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDRIYTH-YYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++|.++..+..... |+++. .+.+..|+|+++++|.
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRFF 123 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEeC
Confidence 89999999999999988776653 45553 2334579999999873
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=148.35 Aligned_cols=125 Identities=25% Similarity=0.419 Sum_probs=103.6
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
...|.|.|++|+||++++ ||||.|.++++. .||+++.++.||.|||.|.|++..+...|.|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC-------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 358999999999998642 799999999977 6999999999999999999987777788999998765321
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCC-------CCcCcEEEEEEEEEEcc
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSG-------LKNNGELHLALRFTCTA 499 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g-------~~~~G~i~l~~~~~~~~ 499 (782)
....++++||++.|++.++..+...++||||.....+. ....++|+++++|+...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 01226899999999999999999999999999866543 23457999999997654
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=147.08 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~ 438 (782)
+.|.|+|++|+||++++ . |. ||||++++.+ .+.||+++.++.||+|||.|.|++... ...|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~---g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-S---GTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC-C---CCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 69999999999999875 2 55 9999999953 367999999999999999999998653 45799999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
+..+ ..+++||.+.|+|.++..+....+||.|
T Consensus 88 ~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8653 1478999999999999888888999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-17 Score=148.60 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=94.2
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----E
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----K 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~ 401 (782)
.|+|.+++.+. +..|.|.|+|++|+||+.++.. +. ||||+|.+.+ .
T Consensus 2 ~G~l~~~l~~~-------------------------~~~~~L~V~vi~a~~L~~~~~~---~~~dpyv~v~l~~~~~~~~ 53 (125)
T cd04031 2 TGRIQIQLWYD-------------------------KVTSQLIVTVLQARDLPPRDDG---SLRNPYVKVYLLPDRSEKS 53 (125)
T ss_pred cEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCcCCC---CCCCCEEEEEEccCCCccc
Confidence 48888888763 3347999999999999988643 55 9999999964 5
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
..||++++++.||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.++|++... ....+||+|+
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~------~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDG------ENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCC------CCcEeeEEEEecccccc-cCCcceEECc
Confidence 7899999999999999999998754 2468999999999765 89999999999999432 2347899984
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-17 Score=143.35 Aligned_cols=94 Identities=23% Similarity=0.306 Sum_probs=83.2
Q ss_pred eEEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC-CCCeEEEEEEeCCCC-
Q 003975 40 HYLCVNVVKARNLPVMDVS----GSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL-QSSLLEVTVKDKDIG- 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~d~~- 113 (782)
|+|.|+|++|++|+..+.. +.+||||+|.++++++||++++++.||+|||.|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 4589999999999999999999999999999999998643 345899999999988
Q ss_pred CCceeEEEEEEccccCCCCC
Q 003975 114 KDDFVGRVSLDLSQVPLRVP 133 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~ 133 (782)
+|++||++.++|++|..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987644
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=146.31 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=95.4
Q ss_pred ceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 28 KTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
.+++.|+- ..+.|.|+|++|+||+..+..|.+||||++.+-. .+++|++++++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 45556655 5679999999999999998889999999999842 3689999999999999999999985 456
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
...|.|.|||++.. ++++||++.|+|+++..... ...+||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 78999999999988 99999999999999965422 36789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-17 Score=148.38 Aligned_cols=118 Identities=21% Similarity=0.328 Sum_probs=102.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeecccc-CCCCCccccEEEEEeccCC----CCeEEEEEEeCCCC-
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLE-KNQNPVWNQIFAFSKERLQ----SSLLEVTVKDKDIG- 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~-~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~d~~- 113 (782)
.|.|+|++|++|+..+..+.+||||+|++++ ++.+|+++. ++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999999999999889999999999998 889999985 5799999999999997653 68899999999986
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEE
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l 160 (782)
+|++||++.+++.++......+......||+|...+|.. .|.|.+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~--~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP--QGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc--CeEEeC
Confidence 899999999999999986543334567899999987764 898864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=147.78 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=89.6
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v 435 (782)
..+.|+|+|++|+||+..+. .+. ||||+|.+. ...+||++++++.||+|||.|.|.+... ...|.|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDS---SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred CCCEEEEEEEEEECCCCccC---CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 34799999999999998864 255 999999984 4679999999999999999999998643 46899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||++.+. ..+|++||.+.|+|.++..+....+||+|.
T Consensus 91 ~~~~~~~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 91 KNSKSFL----SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EECCccc----CCCCceEEEEEEecccccccCCccceEECc
Confidence 9998641 127999999999999998888889999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=147.05 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=99.8
Q ss_pred eeEEEEEEEEeecCCCCccCC-------CCCC-CcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKD-------GKLT-DAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~-------~~~~-dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~ 436 (782)
.|.|+|+|++|+||...+... +.+. ||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 489999999999999876420 1256 999999998865 79999999999999999999997 4579999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccC--CceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLET--DRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|++.++ +|++||++.++|+++.. +.....|++|.. .|+|++++.+..
T Consensus 82 d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLEP--------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEccC--------CcEEEEEEEEec
Confidence 998765 78999999999999987 566799999962 599999988753
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=146.02 Aligned_cols=102 Identities=24% Similarity=0.414 Sum_probs=87.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC-CCCeEEEEEEeCC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL-QSSLLEVTVKDKD 111 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~d 111 (782)
..+.|.|+|++|+||+.++ .|.+||||++++.+ .++||++++++.||+|||+|.|.+... ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999998 88999999999964 367999999999999999999998531 2357899999999
Q ss_pred CC--CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 112 IG--KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 112 ~~--~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.. ++++||.+.|++.++..+. ....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 87 4789999999999997542 36789986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=144.43 Aligned_cols=107 Identities=27% Similarity=0.405 Sum_probs=94.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCC----CCeEEEEEEEcc
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF----EDLIIVTVEDRI 274 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~----~~~l~i~V~d~~ 274 (782)
|+.+.|+|+|++|++|+ ++.+||||++++++++++|+++++ +.||.|||+|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46788999999999998 577999999999999999999886 999999999999986543 468999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 275 RPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.++++++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 888899999999999999865 566788999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=151.66 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=93.6
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEee---------------C
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVY---------------D 426 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~---------------~ 426 (782)
.|.|+|++|+||+. . .|. ||||+|.+.+ ...||+++++|.||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~--~---~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL--K---NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC--C---CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999987 1 256 9999999966 5789999999999999999999995 1
Q ss_pred C-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC-ceEEEEEeeeecCCCC---------CCcCcEEEEEE
Q 003975 427 P-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD-RIYTHYYPLLLLTPSG---------LKNNGELHLAL 493 (782)
Q Consensus 427 ~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~g---------~~~~G~i~l~~ 493 (782)
. ...|.|.|||++.++ .|++||++.|+|+.+..+ .....||+|.....+. ....|.|+|++
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1 247999999998765 899999999999999887 5678999998643321 23467777764
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-17 Score=143.58 Aligned_cols=104 Identities=38% Similarity=0.595 Sum_probs=91.4
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEeeeccccCCCCCcc-ccEEEEEeccC--CCCeEEEEEEeCCCC-CCc
Q 003975 42 LCVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGITKHLEKNQNPVW-NQIFAFSKERL--QSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~kT~~i~~t~nP~W-ne~f~f~~~~~--~~~~L~i~V~d~d~~-~d~ 116 (782)
|.|+|++|++|+.++. .|.+||||++++++++++|++++++.||+| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5899999999999884 789999999999999999999999999999 99999998642 357899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 2234778999976
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=146.90 Aligned_cols=116 Identities=36% Similarity=0.495 Sum_probs=98.5
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEec---c
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKE---R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~---~ 97 (782)
.|...+++.|+. ..+.|.|+|++|++|+..+..|.+||||++.+. +++.+|++++++.||+|||+|.|.+. .
T Consensus 2 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 355677777765 567999999999999999989999999999993 46789999999999999999999742 2
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
.....|.++|||++.. ++++||++.+++.++.... ....|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 3456899999999988 8999999999999998643 367899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=145.37 Aligned_cols=115 Identities=29% Similarity=0.386 Sum_probs=100.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC--CCCeEEEEEEeCCCC-CCceeEEEE
Q 003975 46 VVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL--QSSLLEVTVKDKDIG-KDDFVGRVS 122 (782)
Q Consensus 46 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~d~~-~d~~lG~~~ 122 (782)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. +|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 678999999999999999999999999999999999998643 568899999999988 899999999
Q ss_pred EEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 123 LDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 123 v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
++++++..+. ....|++|.+.++.. ..|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~-~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRP-TGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCc-ccEEEEEEEEEeCCC
Confidence 9999998653 367899998776654 579999999997643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-17 Score=142.38 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=83.1
Q ss_pred eEEEEEEEEeecCCCCccCC-CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeCCcCC
Q 003975 367 GTLELGILSAKNLMQMKSKD-GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDNCYVN 442 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~-~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~~~~~ 442 (782)
|.|.|+|++|+||++.+... .++. ||||+|+++++.+||++++++.||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999986431 2234 9999999999999999999999999999999999753 458999999999876
Q ss_pred CCCCCCCCCccEEEEEEcccccCCc
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
.|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-17 Score=145.06 Aligned_cols=101 Identities=26% Similarity=0.440 Sum_probs=89.0
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCee-ccEEEEEeeCC---CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRW-NEQYTWDVYDP---CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~w-ne~~~f~v~~~---~~~l~i~v~d~~~~~~ 443 (782)
|+|+|++|+||+.++. ..+. ||||+++++++.+||++++++.||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998763 2355 99999999999999999999999999 99999999763 468999999999876
Q ss_pred CCCCCCCCccEEEEEEcccccC---CceEEEEEeeee
Q 003975 444 SKDDAKDQRIGKVRIRLSTLET---DRIYTHYYPLLL 477 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~~ 477 (782)
+|++||++.++++++.. +..+..||+|.+
T Consensus 78 -----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -----CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 88999999999999977 456899999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=146.80 Aligned_cols=115 Identities=34% Similarity=0.479 Sum_probs=97.8
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|..++++.|+- ..+.|.|+|++|+||+..+..+.+||||+|.+. ..+++|++++++.||+|||+|.|.+. +
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 44566777665 567999999999999999988999999999995 35789999999999999999999985 3
Q ss_pred CCCCeEEEEEEeCCCC---CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 LQSSLLEVTVKDKDIG---KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~---~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||++.. ++++||++.+++.++..+. ....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4467899999999873 8999999999999996643 367899984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=144.59 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=88.2
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC------CEEEeecccCCCCCCeeccEEEEEeeC---CCceEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG------NKWIRTRTILDTLAPRWNEQYTWDVYD---PCTVIT 432 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~------~~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~ 432 (782)
.+..+.|.|+|++|+||++++. .+. ||||++++- ..+.||++++++.||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~---~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSI---PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccccc---CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 3445799999999999998853 355 999999982 247999999999999999999999874 356999
Q ss_pred EEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC-ceEEEEEee
Q 003975 433 IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD-RIYTHYYPL 475 (782)
Q Consensus 433 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L 475 (782)
|+|||.+.++ .+++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998765 899999999999999554 457889986
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=144.01 Aligned_cols=115 Identities=23% Similarity=0.321 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C--Cce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLG-NYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K--DDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~--d~~ 117 (782)
|+|+|++|++|+..+..|.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999989999999999997 578899999999999999999999976 67899999999987 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC--cccceEEEEEE
Q 003975 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD--QTTKGEIMLAV 162 (782)
Q Consensus 118 lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~--~~~~G~l~l~~ 162 (782)
||++.+++.++..... ...+|++|...... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999976432 24679999765532 23689988865
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=145.18 Aligned_cols=120 Identities=24% Similarity=0.398 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC--
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS-- 444 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~-- 444 (782)
.|+|+|++|+||+..|. .|. ||||+|.++++..+|+++.++.||.|||.|.|.+..+...|.|+|||++.....
T Consensus 2 ~L~V~vi~a~~L~~~d~---~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDK---TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCC---CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 68999999999998764 356 999999999999999999999999999999999977777999999999852100
Q ss_pred ---CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 445 ---KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 445 ---~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
-...+|++||.+.+++.++... ...||+|......+ ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 0013799999999999998644 47899998644322 3369988863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-17 Score=144.71 Aligned_cols=100 Identities=29% Similarity=0.442 Sum_probs=87.3
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccC---CCCeEEEEEEeCCC
Q 003975 40 HYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERL---QSSLLEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~ 112 (782)
|+|.|+|++|++|+..|.. |.+||||+|++.+ ..++|+++++|.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 9999999999953 468999999999999999999987543 35789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
. +|++||++.+++.++.. ...|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~--------~~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE--------DRNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhc--------CCCCCcccc
Confidence 8 89999999999999985 345777653
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=145.28 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=97.7
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---CCEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---GNKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~~ 403 (782)
.|+|++++.+. +..+.|.|+|++|+||+..+.. +. ||||++.+ +++..
T Consensus 2 ~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---~~~dpyv~v~~~~~~~~~~ 53 (125)
T cd08386 2 LGRIQFSVSYD-------------------------FQESTLTLKILKAVELPAKDFS---GTSDPFVKIYLLPDKKHKL 53 (125)
T ss_pred ccEEEEEEEEC-------------------------CCCCEEEEEEEEecCCCCccCC---CCCCceEEEEECCCCCcce
Confidence 48888888762 3346999999999999987643 55 99999998 34679
Q ss_pred eecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||++++++.||.|||.|.|.+.. ....|.++|||++.++ ++++||.+.|+|+++..+...+.|++|.
T Consensus 54 kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 54 ETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999999999999999998532 2357999999999876 8899999999999999888899999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=143.98 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=95.2
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~ 403 (782)
.|+|.+++.+.. ..+.|+|+|++|+||+..+.. .+. ||||++.+. .+..
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~--~~~~DpyV~v~l~~~~~~~~ 54 (128)
T cd08388 2 LGTLFFSLRYNS-------------------------EKKALLVNIIECRDLPAMDEQ--SGTSDPYVKLQLLPEKEHKV 54 (128)
T ss_pred CeEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCCCCC--CCCcCCEEEEEEeCCcCcee
Confidence 488888887633 346999999999999987532 255 999999985 3568
Q ss_pred eecccCCCCCCeeccEEEEE-eeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC--ceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWD-VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD--RIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~-v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~ 476 (782)
||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +|++||++.|+|+++... +....|.+|.
T Consensus 55 kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 55 KTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYS------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCC------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999999999999999994 431 2347999999999876 899999999999999654 6789999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=145.26 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=88.5
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v 435 (782)
..|.|.|+|++|+||+..+. ..+. ||||++.+.+ ...||++++++.||+|||.|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 35799999999999998762 2356 9999998832 468999999999999999999998752 46899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
||++.++ ++++||.+.++|+++..+...+.||+|
T Consensus 90 ~d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc------CCceeeEEEEecccccccCCCccEEEC
Confidence 9999776 889999999999999877778999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=146.02 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=94.4
Q ss_pred ceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC-----EEE
Q 003975 329 SKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-----KWI 403 (782)
Q Consensus 329 G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-----~~~ 403 (782)
|+|.+++++ .+..|.|.|.|++|+||+++|.....+.||||+|++.. .+.
T Consensus 2 Gel~~sL~Y-------------------------~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kk 56 (138)
T cd08407 2 GEVLLSISY-------------------------LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKK 56 (138)
T ss_pred CEEEEEEEE-------------------------eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCccccee
Confidence 889999986 34557999999999999998732112359999999843 257
Q ss_pred eecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 404 RTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||++++++.||+|||.|.|.+... ...|.|+|||++.++ ++++||++.+++.. .|....+|..+..
T Consensus 57 kT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 57 QTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPG------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred ccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCc------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999998752 568999999999876 89999999999976 4445567777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=151.45 Aligned_cols=118 Identities=34% Similarity=0.429 Sum_probs=97.7
Q ss_pred CCCceeeeecccc----------ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCcccc
Q 003975 25 GGDKTASTYDLVE----------LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQ 89 (782)
Q Consensus 25 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne 89 (782)
|...++..|.-.. ..|.|.|+|++|+||+..+..|.+||||+|++. .++++|+++++|.||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 4455666665533 668999999999999999989999999999983 2578999999999999999
Q ss_pred EEEEEec---cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 90 IFAFSKE---RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 90 ~f~f~~~---~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+|.|.+. +.....|.|+|||++.. ++++||++.+++.++..... ...|+.|.+
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9999842 34456899999999988 89999999999999875432 567888764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=141.37 Aligned_cols=102 Identities=22% Similarity=0.396 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeE
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILG 283 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG 283 (782)
|.|+|++|++|+..+..+.+||||+++++++.++|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 8899999999999988899999999999999999999886 9999999999999998778899999999875 88999
Q ss_pred EEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 284 RELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 284 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++.++|.++... ......+||+|.+.
T Consensus 78 ~~~i~l~~l~~~---~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE---PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc---ccceeeeeEecCCC
Confidence 999999998853 24568899999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=143.86 Aligned_cols=115 Identities=28% Similarity=0.418 Sum_probs=99.0
Q ss_pred eEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeEEEEEE
Q 003975 40 HYLCVNVVKARNLPVMDVS----------GSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 108 (782)
|.|+|+|++|++|+..|.. |.+||||++.++++. .+|+++.+|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 7899999999999988852 689999999999864 699999999999999999999974 578999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 109 DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 109 d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
|++.. ++++||++.++|.++..+. ......|++|+. .|+|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC-------CcEEEEEEEEec
Confidence 99887 8999999999999998741 123679999973 589999987764
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=144.32 Aligned_cols=119 Identities=28% Similarity=0.376 Sum_probs=99.2
Q ss_pred eeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 003975 39 MHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN--YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~ 114 (782)
+|.|.|+|++|++|+..+ ..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.. ....|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999765 457799999999988 78999999999999999999999874 478999999999988 9
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
|++||++.+++.++...... ...|+.+. ..++ ..|+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k--~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGK--PVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhh-cCCc--cceEEEEEEEeC
Confidence 99999999999999875431 12344554 3444 489999999885
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=144.08 Aligned_cols=114 Identities=30% Similarity=0.398 Sum_probs=97.0
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEE-ec--cC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFS-KE--RL 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~-~~--~~ 98 (782)
|...+++.|+. ..+.|.|+|++|+||+..+..|.+||||++.+.+ ++++|+++++ .||+|||+|.|+ +. ++
T Consensus 3 G~l~~sl~Y~~--~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDP--SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECC--CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 45567777776 4568999999999999999889999999988743 5789999887 999999999998 54 44
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.. ++++||++.++|+++.... ....|++|+
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 578899999999988 8999999999999996643 377899997
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=143.14 Aligned_cols=113 Identities=27% Similarity=0.411 Sum_probs=95.4
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
...+++.|+- ..+.|.|+|++|+||+..+ ..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 ~i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 2 EIEFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred eEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 3456667754 5679999999999999988 788999999999842 46899999999999999999999864
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+....|.|+|||++.. ++++||++.++|+++..+. ....||+|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3457899999999988 8999999999999996542 26789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=143.23 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=96.5
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~ 403 (782)
.|+|.+++.+.. ..+.|.|+|++|+||++.+. .+. ||||++.+. .++.
T Consensus 2 ~G~l~~sl~Y~~-------------------------~~~~L~V~Vi~a~nL~~~~~---~~~~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 2 CGDLDVAFEYDP-------------------------SARKLTVTVIRAQDIPTKDR---GGASSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEECC-------------------------CCCEEEEEEEEecCCCchhc---CCCCCcEEEEEEccCCccee
Confidence 388999888733 34699999999999998863 355 999998772 3578
Q ss_pred eecccCCCCCCeeccEEEEE-eeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWD-VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~-v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||+++++ .||+|||.|.|+ +.. ....|.++|||++.++ ++++||.+.|+|+++..+.....||+|+
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMR------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcc------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999888 999999999998 543 2568999999999876 8999999999999999888899999996
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=147.37 Aligned_cols=104 Identities=27% Similarity=0.341 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCccCC-----------CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEE
Q 003975 368 TLELGILSAKNLMQMKSKD-----------GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITI 433 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~-----------~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i 433 (782)
.|.|+|++|+||+.+|... ..+. ||||+|.++++..||++++++.||+|||+|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999987431 1245 9999999999999999999999999999999998654 569999
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccCCce-------EEEEEeeee
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI-------YTHYYPLLL 477 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~ 477 (782)
+|||++..+ +|++||++.|+|+++..... -.+|+.|..
T Consensus 81 ~v~D~d~~~------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVG------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCC------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999876 89999999999999876542 247777764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=142.37 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=97.7
Q ss_pred EEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCC
Q 003975 373 ILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDA 448 (782)
Q Consensus 373 v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~ 448 (782)
|++|+||+. . .|+ ||||+|.+++..++|++++++.||+|||.|.|++..+ ...|.|+|||++.++
T Consensus 2 vi~a~~L~~--~---~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG--L---KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc--c---CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 689999997 2 255 9999999999999999999999999999999999753 579999999999875
Q ss_pred CCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 449 KDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 449 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
+|++||++.++|+++..+.....|++|.... +....|+|++++.|.+.
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 8999999999999999988899999997533 33335999999998664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-16 Score=141.51 Aligned_cols=118 Identities=28% Similarity=0.438 Sum_probs=99.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
+.|.|+|++|++|+..+..|.+||||++.+++ ..++|++++++.||.|||+|.|.+.......|.|+|||++.. ++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999899999999999864 367999999999999999999999775567899999999988 99
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
++||++.++|.++.... +......|++|.. .|+|.+.+.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGD--DGLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCC--CCCCceEEEEcCC-------CCeEEEEEEEee
Confidence 99999999999875432 1223678999974 478888877654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=142.94 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=94.5
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-CEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-NKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|+|+|++|+||+.++.. +. ||||+++++ .+.+||++++++.||.|||.|.|.+.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~~---~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKRDLF---RLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCccCCC---CCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999987643 56 999999996 678999999999999999999999975 689999999998764
Q ss_pred CCCCCccEEEEEEcccccCCc-eEEEEEeeeecCCC-CCCcCcEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLETDR-IYTHYYPLLLLTPS-GLKNNGELHLAL 493 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~-g~~~~G~i~l~~ 493 (782)
...|++||++.++++++.... ....||+|...... +....|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 112689999999999986543 33679999765542 222358887764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=149.26 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=100.6
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~ 401 (782)
+|+|.+++++..... +..+ .......|.|.|+|++|+||+..+. .+. ||||+|.+. ..
T Consensus 1 ~G~l~~~l~y~~~~~----------~~~~---~~~~~~~g~L~V~Vi~A~nL~~~d~---~g~~DPYVkv~l~~~~~~~~ 64 (162)
T cd04020 1 RGELKVALKYVPPES----------EGAL---KSKKPSTGELHVWVKEAKNLPALKS---GGTSDSFVKCYLLPDKSKKS 64 (162)
T ss_pred CceEEEEEEecCccc----------cccc---cccCCCCceEEEEEEeeeCCCCCCC---CCCCCCEEEEEEEcCCCCCc
Confidence 388999998754210 0000 1113467999999999999998864 356 999999882 35
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC----CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
.+||++++++.||.|||.|.|.+..+ ...|.|+|||++.++ +|++||++.++++++........|+++.
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC------CCceEEEEEEeCCccccCCCccccccCC
Confidence 79999999999999999999986432 358999999999876 7999999999999998777779999886
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-16 Score=144.83 Aligned_cols=108 Identities=26% Similarity=0.427 Sum_probs=91.4
Q ss_pred EEEEEEEeeCCCCCCCC--------------CCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-CCCCeEEEE
Q 003975 42 LCVNVVKARNLPVMDVS--------------GSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVT 106 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~ 106 (782)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998854 378999999999999999999999999999999999743 235789999
Q ss_pred EEeCCCC-CCceeEEEEEEccccCCCCCCC--CCCCCEEEEeccCC
Q 003975 107 VKDKDIG-KDDFVGRVSLDLSQVPLRVPPD--SPLAPQWYRLEDKK 149 (782)
Q Consensus 107 V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~--~~~~~~w~~L~~~~ 149 (782)
|||+|.. +|++||++.+++.++....... -...++|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987643210 11357999998865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=141.38 Aligned_cols=114 Identities=32% Similarity=0.373 Sum_probs=96.3
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEecc--CCC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKER--LQS 100 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~~--~~~ 100 (782)
..+++.|+- ..+.|.|+|++|++|+..+ ..+.+||||++++. .+.++|++++++.||+|||+|.|.+.. ...
T Consensus 3 l~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~ 80 (123)
T cd08390 3 LWFSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQR 80 (123)
T ss_pred EEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcc
Confidence 356666665 5578999999999999998 68899999999984 356799999999999999999999863 335
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 101 SLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 101 ~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
..|.|+|||++.. ++++||++.++|.++..... ...|++|+.
T Consensus 81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~~ 123 (123)
T cd08390 81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLEP 123 (123)
T ss_pred cEEEEEEEECCcCCCCcEEEEEEEeccceecCCC-----ceEEEeCCC
Confidence 6899999999988 89999999999999987543 568999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=141.98 Aligned_cols=120 Identities=28% Similarity=0.510 Sum_probs=98.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCC---------CCCeEEEEEEEc
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEP---------FEDLIIVTVEDR 273 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~---------~~~~l~i~V~d~ 273 (782)
+|+|+|++|++|+..+..+.+||||+|.++++.++|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 69999999999999999999999999999999999999986 99999999999975332 124799999999
Q ss_pred cCCCCCceeEEEEE-eCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEe
Q 003975 274 IRPGKDEILGRELI-PVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCL 337 (782)
Q Consensus 274 ~~~~~d~~iG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~ 337 (782)
+..++|++||++.+ ++..+... .......+|++|.... ...|+|++.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~------------~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG------------QSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC------------CchhheeEEeEE
Confidence 99999999999997 44444322 3456688999997442 356999888865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=141.03 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=90.0
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~ 436 (782)
+..+.|.|.|++|+||+.++. ..+. ||||++++. .+..+|++++++.||+|||.|.|.+... ...|.|.||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 345799999999999998762 2355 999999983 3568999999999999999999998753 458999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
|.+..+ .+++||++.++|+++........|++|.
T Consensus 89 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 7899999999999999888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=145.14 Aligned_cols=101 Identities=32% Similarity=0.550 Sum_probs=89.8
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eEeeeccccCCCCCc
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----------------------------YKGITKHLEKNQNPV 86 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~kT~~i~~t~nP~ 86 (782)
.++.+.|.|+|++|++|+..|..|.+||||+|.+++ ..++|+++++|.||+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 567899999999999999999999999999999963 236899999999999
Q ss_pred cccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 87 WNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 87 Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
|||+|.|.+..+....|.|+|||++ +++||++.+++.++... ..+.||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 9999999998766789999999997 89999999999999832 25789987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=142.27 Aligned_cols=90 Identities=26% Similarity=0.356 Sum_probs=76.9
Q ss_pred eEEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEE
Q 003975 201 LYYLRVFVFEAQDLVPSDK--GRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVE 271 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~ 271 (782)
.+.|.|+|++|+||...+. .+.+||||+|++.. .+.+|+++++ +.||+|||.|.|.+... .+..|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 3469999999999999983 34589999999965 2467888876 99999999999998643 3568999999
Q ss_pred EccCCCCCceeEEEEEeCCC
Q 003975 272 DRIRPGKDEILGRELIPVRN 291 (782)
Q Consensus 272 d~~~~~~d~~iG~~~i~l~~ 291 (782)
|++..+++++||++.+++..
T Consensus 93 d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCcCcceeceEEecCcC
Confidence 99999999999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-16 Score=141.57 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=84.8
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C-E--EEeecccCCCCCCeeccEEEEEeeC---CCceEEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N-K--WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~-~--~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~ 434 (782)
+..+.|.|+|++|+||+..+. .|. ||||+|++. + + +.||+++++++||+|||.|.|.|.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~---~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNG---KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccC---CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 344699999999999998753 366 999999983 2 2 5789999999999999999999875 35689999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|||++.++ ++++||++.|+... .+....+|..+..
T Consensus 89 V~~~d~~~------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999876 89999999998765 4555677877764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=142.18 Aligned_cols=112 Identities=26% Similarity=0.268 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccC-CCCCCeeccEEEEEeeCC-----CceEEEEEEeCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTIL-DTLAPRWNEQYTWDVYDP-----CTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~-~t~~P~wne~~~f~v~~~-----~~~l~i~v~d~~ 439 (782)
.|+|+|++|+||+..+. .++ ||||+|++++ +..+|+++. ++.||.|||.|.|.+..+ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~---~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNL---FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCc---ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 37899999999998754 356 9999999988 889999985 589999999999999876 579999999998
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCce-----EEEEEeeeecCCCCCCcCcEEEE
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRI-----YTHYYPLLLLTPSGLKNNGELHL 491 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~g~~~~G~i~l 491 (782)
.++ +|++||.+.|+|.++..+.. ...||+|.... .+.+|.|++
T Consensus 78 ~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~---g~~~G~~~~ 125 (125)
T cd04051 78 PSL------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS---GKPQGVLNF 125 (125)
T ss_pred CCC------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC---CCcCeEEeC
Confidence 765 89999999999999976554 47899998533 344688874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-16 Score=145.41 Aligned_cols=117 Identities=29% Similarity=0.291 Sum_probs=94.2
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|...+++.|+- ..+.|.|+|++|+||+..|..|.+||||+|++.+ .+.||+++++|.||+|||+|.|.+. +
T Consensus 2 G~i~~sL~Y~~--~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLP--TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 44566666655 4568999999999999999899999999999943 2568999999999999999999985 4
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g 150 (782)
+....|.|+|||+|.. ++++||++.+..... + ....+|..+....+
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~~ 126 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASLR 126 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCCC
Confidence 5678899999999988 999999999966532 2 12456777666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=138.81 Aligned_cols=117 Identities=25% Similarity=0.381 Sum_probs=97.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eEeeeccccCCCCCcc-ccEEEEEeccCCCCeEEEE
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------YKGITKHLEKNQNPVW-NQIFAFSKERLQSSLLEVT 106 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~kT~~i~~t~nP~W-ne~f~f~~~~~~~~~L~i~ 106 (782)
+..|++++|++|+ ++..|++||||++.+.+ ++++|+++++|+||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4689999999998 67789999999999952 3689999999999999 9999999854 5689999
Q ss_pred EEeCCCC----CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEE
Q 003975 107 VKDKDIG----KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAV 162 (782)
Q Consensus 107 V~d~d~~----~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~ 162 (782)
|||++.. .+++||++.+++.++..... .....+||+|+.......+.|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998754 27999999999999986532 234678999997765556889998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-16 Score=139.61 Aligned_cols=94 Identities=31% Similarity=0.364 Sum_probs=83.6
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-CCCCeEEEEEEeCCCC-
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~d~~- 113 (782)
.+.++.|.|+|++|++|+. +..|.+||||+|++++++++|++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3467899999999999984 667899999999999999999999999999999999997532 3568899999999998
Q ss_pred CCceeEEEEEEccccCC
Q 003975 114 KDDFVGRVSLDLSQVPL 130 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~ 130 (782)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997764
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=137.20 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=84.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEE--CC---EEEeecccCCCC-CCeeccEEEEEeeCC--CceEEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKY--GN---KWIRTRTILDTL-APRWNEQYTWDVYDP--CTVITIG 434 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~---~~~rT~~~~~t~-~P~wne~~~f~v~~~--~~~l~i~ 434 (782)
.|..|+|+|.|++|+||++++ +..+.||||+|++ ++ .+.||+++++|+ ||+|||.|.|+|... ...|.|+
T Consensus 10 ~p~~~rLtV~VikarnL~~~~--~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSS--TPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred cCcCCeEEEEEEEccCCCccc--CCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 566789999999999999874 2233399999987 22 468999999995 699999999999753 4489999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|||++..+ ++++||++.++.+... +....+|.++..
T Consensus 88 v~d~~~~~------~n~~IG~v~lG~~~~~-~~~~~hW~~m~~ 123 (135)
T cd08692 88 LYSRSSVR------RKHFLGQVWISSDSSS-SEAVEQWKDTIA 123 (135)
T ss_pred EEeCCCCc------CCceEEEEEECCccCC-chhhhhHHHHHh
Confidence 99998765 8999999999998742 233467777654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=170.50 Aligned_cols=177 Identities=20% Similarity=0.334 Sum_probs=144.2
Q ss_pred chhhHHHHHHHHH---HHHHHhhccccccCchhhHHHHHHHHHHHHccch--hHHHHHHHHHHHHHhhccc-CCCCCCCC
Q 003975 569 CKANFQRIVELLS---AICRWFNDICTWRNPVETALLHVLFLTLVFYPEL--ILPTIFLYLFLIGMWNYRL-RPRHPPHV 642 (782)
Q Consensus 569 ~~~n~~rl~~~~~---~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~~~~~~ 642 (782)
.-+|+..+++++. .++.+++.+.+|++|.+|+.+++++.+++|..|+ ++|++++++++.|+|.... +.+.+
T Consensus 485 I~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~--- 561 (683)
T PF04842_consen 485 IDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS--- 561 (683)
T ss_pred CccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc---
Confidence 5589999999998 9999999999999999999999999999999887 8999999999999997665 43332
Q ss_pred CcccchhhhcchhhhhcccCCCcccccccCC-CCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChh
Q 003975 643 DAKLSQAINAHLDELVKEFDTSDELDEEFDS-FPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLR 721 (782)
Q Consensus 643 ~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~l~~~~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~ 721 (782)
-++... .|+.+++ .+++-++|+.+.++++.|++++.++.|+|.++.|..|+
T Consensus 562 -------------------------~~~v~V~~pP~~nT---vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~Pq 613 (683)
T PF04842_consen 562 -------------------------FGEVTVRDPPPKNT---VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQ 613 (683)
T ss_pred -------------------------cceEEecCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 111221 2444554 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhchhhhhhheeeee-cccCCCCCCCCCC----chhhhhccCCC
Q 003975 722 ATFIFLIFSFIWAVFSYVTPFEVVAVLIGLY-MLRHPRFRSKMPS----VPVNFFKSFPS 776 (782)
Q Consensus 722 ~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~-~~r~P~~~~~~~~----~~~~~~~r~ps 776 (782)
+|..++++++++|+++.++|+||++++..+. +-|+=.||+.+.. .+-.++-++|.
T Consensus 614 aT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 614 ATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999998887 2222225443222 34445556663
|
|
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=139.78 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=91.5
Q ss_pred EEEEEEEeec--CCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCCCCCeeccEEEEEeeCC---------CceE
Q 003975 369 LELGILSAKN--LMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYTWDVYDP---------CTVI 431 (782)
Q Consensus 369 l~v~v~~a~~--L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t~~P~wne~~~f~v~~~---------~~~l 431 (782)
..++|..|+| |+..+. .+. ||||++++ +.++.||+++++|+||+|||.|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~~~---~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSGWN---PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCCcC---CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455556665 666543 355 99999986 34689999999999999999999999654 3479
Q ss_pred EEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCC-CcCcEEEEEEEE
Q 003975 432 TIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGL-KNNGELHLALRF 495 (782)
Q Consensus 432 ~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~-~~~G~i~l~~~~ 495 (782)
.|+|||++.+. .+|++||++.|+|+.+..+.....|++|.. |. ...|+|+++++.
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEe
Confidence 99999998753 279999999999999988877788999974 22 236899999986
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=140.35 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCC-CCCCeeccEEEEEeeCC----CceEEEEEEeCCc
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLAPRWNEQYTWDVYDP----CTVITIGVFDNCY 440 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~-t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~ 440 (782)
|.|+|.|++|+||+..+.. +. ||||+|+++++..+|++..+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~---~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFL---GKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCC---CCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999987643 56 99999999999999999875 89999999999999876 5689999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
++ +|++||++.++|+++..+.....|++|..
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 79999999999999988888899999975
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=136.91 Aligned_cols=112 Identities=35% Similarity=0.527 Sum_probs=97.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|+..+..|.+||||+|.+++ ..++|+++.++.||+|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999998889999999999976 458999999999999999999998765678899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEE
Q 003975 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160 (782)
Q Consensus 120 ~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l 160 (782)
++.+++.++..+. ....|++|...++.. .|.|.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~--~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGGGK--LGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCCcc--CceEEc
Confidence 9999999998653 267899998766553 677654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-16 Score=144.02 Aligned_cols=114 Identities=29% Similarity=0.457 Sum_probs=94.0
Q ss_pred eeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--CCCC
Q 003975 29 TASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER--LQSS 101 (782)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~--~~~~ 101 (782)
+++.| ....+.|.|+|++|++|+..|..|.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.. ....
T Consensus 4 ~~l~y--~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 4 VSLMY--NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEE--cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 44444 446789999999999999999889999999999953 36799999999999999999999863 3457
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 102 LLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 102 ~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.|.|+|||++.. ++++||++.+++.... ....+|+++....+.
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~~ 125 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPDK 125 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCCC
Confidence 899999999988 8999999999997521 125689888765543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=137.27 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCC
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKD 279 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d 279 (782)
.++|+|++|++|+..+.++.+||||++.+++ +.++|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999899999999999864 3679999886 99999999999999876667899999999988899
Q ss_pred ceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEecc
Q 003975 280 EILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEA 339 (782)
Q Consensus 280 ~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~ 339 (782)
++||++.++++.+... .+......|++|.+. |++++++++.+
T Consensus 81 ~~iG~~~i~l~~~~~~--~~~~~~~~w~~l~~~----------------g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG--DDGLPREIWLDLDTQ----------------GRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC--CCCCCceEEEEcCCC----------------CeEEEEEEEee
Confidence 9999999999876532 214456789999753 88999988755
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=141.95 Aligned_cols=91 Identities=41% Similarity=0.545 Sum_probs=85.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
.|.|.|+|++|++|+..+. +.+||||++++++++++|++++++.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999999887 8999999999999999999999999999999999999875 78899999999988 8999
Q ss_pred eEEEEEEccccCCC
Q 003975 118 VGRVSLDLSQVPLR 131 (782)
Q Consensus 118 lG~~~v~l~~l~~~ 131 (782)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999865
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=138.53 Aligned_cols=118 Identities=20% Similarity=0.311 Sum_probs=95.6
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE--C---CeEeeeccccCCCCCccccEEEEEeccC--------CCCeEEEE
Q 003975 42 LCVNVVKARN--LPVMDVSGSLDPYVEVKL--G---NYKGITKHLEKNQNPVWNQIFAFSKERL--------QSSLLEVT 106 (782)
Q Consensus 42 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~--~---~~~~kT~~i~~t~nP~Wne~f~f~~~~~--------~~~~L~i~ 106 (782)
..++|..|++ |+..+..+.+||||++.+ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3556666666 778887889999999997 2 3689999999999999999999998642 25679999
Q ss_pred EEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 107 VKDKDIG--KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 107 V~d~d~~--~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
|||++.+ +|++||++.++|+.+..... ...|++|.+.. +...|+|.+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCc-----ceEEEEhhhCC--CCcCCEEEEEEEecC
Confidence 9999986 79999999999999976532 55799998633 336899999987753
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=171.99 Aligned_cols=126 Identities=23% Similarity=0.405 Sum_probs=107.5
Q ss_pred eEEEEEEEEeecCCCCccC------------------------------CC---------CCC-CcEEEEEECCE-EEee
Q 003975 367 GTLELGILSAKNLMQMKSK------------------------------DG---------KLT-DAYCVAKYGNK-WIRT 405 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~------------------------------~~---------~~~-dpyv~v~~~~~-~~rT 405 (782)
|.|.++|++|++|++||.. .+ .++ ||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 7899999999999875431 01 245 99999999875 5799
Q ss_pred cccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCc
Q 003975 406 RTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKN 485 (782)
Q Consensus 406 ~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~ 485 (782)
++++++.||+|||.|.|.+.++...|.|+|+|+|.++ +++||.+.|||.++..+...+.|++|.....+..+.
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKA 166 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCC
Confidence 9999999999999999999998889999999999874 589999999999999999999999999755444445
Q ss_pred CcEEEEEEEEEEcc
Q 003975 486 NGELHLALRFTCTA 499 (782)
Q Consensus 486 ~G~i~l~~~~~~~~ 499 (782)
.|+|+++++|.+..
T Consensus 167 ~~kl~v~lqf~pv~ 180 (868)
T PLN03008 167 ETAIFIDMKFTPFD 180 (868)
T ss_pred CcEEEEEEEEEEcc
Confidence 68999999998743
|
|
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=137.72 Aligned_cols=104 Identities=28% Similarity=0.398 Sum_probs=92.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccC---CCCeEEEEEEeCCCC-C
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERL---QSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~~-~ 114 (782)
|.|.|+|++|++|+..+..+.+||||+|+++++..+|+++.+ +.||+|||+|.|.+... ....|.|+|||++.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888899999999999998889999885 89999999999999765 357899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+++||++.+++.++..+. ..+.|++|...
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998753 25689998874
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=139.19 Aligned_cols=90 Identities=32% Similarity=0.555 Sum_probs=82.6
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
.|.|+|+|++|+||+..+. ++ ||||+++++++..||++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~----~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF----TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCCC----CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 4899999999999997652 45 9999999999999999999999999999999999998889999999999876
Q ss_pred CCCCCCCccEEEEEEcccccC
Q 003975 445 KDDAKDQRIGKVRIRLSTLET 465 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~ 465 (782)
+|++||++.+++.++..
T Consensus 75 ----~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ----KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ----CCCEEEEEEEEHHHhhh
Confidence 89999999999998743
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-16 Score=143.17 Aligned_cols=118 Identities=33% Similarity=0.416 Sum_probs=97.3
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
|...++..|+. ..+.|.|+|++|++|+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 44566667654 5678999999999999999999999999999843 25789999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.....|.|+|||++.. ++++||++.+++... .. ...+|++|.+..|+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~-----~~~~w~~l~~~~~~ 127 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GS-----GGHHWKEVCNPPRR 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--Cc-----hHHHHHHHHhCCCC
Confidence 3456799999999998 999999999999882 21 36789998776554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=134.63 Aligned_cols=111 Identities=30% Similarity=0.376 Sum_probs=94.6
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~~~~~ 445 (782)
|+|+|++|+||+..+. .+. ||||+|.+++ +.++|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~---~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSADR---NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCCC---CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 5789999999998753 356 9999999965 56899999999999999999999986 4678999999999765
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHL 491 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l 491 (782)
++++||++.+++.++..+.....|++|.. +|..+.|.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 89999999999999999888999999975 34444576654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=139.94 Aligned_cols=102 Identities=28% Similarity=0.456 Sum_probs=90.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEeeeccccCCCCCccccEEEEEeccC---------------CCCe
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLG----NYKGITKHLEKNQNPVWNQIFAFSKERL---------------QSSL 102 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~kT~~i~~t~nP~Wne~f~f~~~~~---------------~~~~ 102 (782)
|.|+|++|++|+.. ..|.+||||+|+++ +++++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 6789999999999999999999998654 4678
Q ss_pred EEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 103 LEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 103 L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|.|+|||++.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 9999999999999998543 257899998865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=135.04 Aligned_cols=119 Identities=27% Similarity=0.298 Sum_probs=96.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
.|.|+|.+|+ |...+..+.+||||+|+++++ .++|++++++.||+|||+|.|.+.. ...|.|+|||++.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555789999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCC-CcccceEEEEEE
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-DQTTKGEIMLAV 162 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-~~~~~G~l~l~~ 162 (782)
|++.++|.++.............|++|...+. .....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999998754322222335899986552 113589998864
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=134.90 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=92.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|.|+|++|++|+..+..|.+||||+|.+++ ..++|+++.++.||+|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 67999999999999999889999999999987 568999999999999999999988764 47899999999988 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 118 lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
||++.+++.++.... ...||.|.+..
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCC
Confidence 999999999998762 45788888765
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=136.16 Aligned_cols=101 Identities=32% Similarity=0.341 Sum_probs=90.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
|.|+|.|++|+||+..+.. +. ||||+|++++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~---g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGV---GKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCC---CCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987643 56 9999999977 579999999999999999999999887789999999999876
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+|++||++.++|.++..+ ..+.||-|..
T Consensus 76 ----~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 889999999999999876 5588998875
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=138.19 Aligned_cols=101 Identities=29% Similarity=0.394 Sum_probs=88.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~ 438 (782)
+.|+|+|++|+||+..+. .+. ||||+|.+.+ ...||++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~~---~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMDP---NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcCC---CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 599999999999998754 256 9999999953 679999999999999999999998754 46899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+.++ ++++||++.++|+++... ....||+|..
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8765 899999999999999865 5688999985
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=138.67 Aligned_cols=105 Identities=32% Similarity=0.439 Sum_probs=89.4
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eEeeeccccCCCCCccccEEEEEecc
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGITKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~kT~~i~~t~nP~Wne~f~f~~~~ 97 (782)
|-..++..|+ ...+.|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~--~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 3 GVLTVKAYYR--ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred eEEEEEEEEc--CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 3344555554 46679999999999999998889999999999952 46899999999999999999999864
Q ss_pred ----CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCC
Q 003975 98 ----LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 98 ----~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~ 131 (782)
.....|.|+|||++.. ++++||++.++|.++..-
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 2356899999999988 799999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=134.51 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=77.2
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCC-CCCcccceeEEEecCCC-CCeEEEEEE
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRS-VNPVWNEEHMFVASEPF-EDLIIVTVE 271 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t-~nP~wne~f~f~v~~~~-~~~l~i~V~ 271 (782)
|..+.|+|+|++|+||++....+.+||||+|++-. .+++|+++++ + .||+|||+|.|.+.... +..+.|+||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 34467999999999999987677789999999932 4678888876 7 46999999999997543 337889999
Q ss_pred EccCCCCCceeEEEEEeCCCc
Q 003975 272 DRIRPGKDEILGRELIPVRNV 292 (782)
Q Consensus 272 d~~~~~~d~~iG~~~i~l~~l 292 (782)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999888999999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=137.22 Aligned_cols=115 Identities=34% Similarity=0.503 Sum_probs=99.0
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~- 98 (782)
|...++..|+. +.|.|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 44566666666 78999999999999988889999999999963 578999999999999999999998643
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|+|||++.. ++++||++.++++++... ....||+|.+..
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 356899999999987 999999999999999854 257899998764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=135.71 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=81.7
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC--CCceEEEEEEeCC
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD--PCTVITIGVFDNC 439 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~--~~~~l~i~v~d~~ 439 (782)
....|.|+|+|++|+||+. + ..+. ||||+|+++++.+||++++++.||+|||+|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d---~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-D---YFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-C---cCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3557899999999999974 3 2356 999999999999999999999999999999997543 3679999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCC
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
.++ +|++||++.++|.....+
T Consensus 100 ~~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC------CCCeeEEEEEEecCCcee
Confidence 876 899999999999977643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=135.01 Aligned_cols=101 Identities=26% Similarity=0.373 Sum_probs=87.7
Q ss_pred EEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCC---CCCeEEEEEEEcc
Q 003975 202 YYLRVFVFEAQDLVPSDKG-RAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEP---FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~ 274 (782)
|.|+|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999999987 8999999999943 4689999987 99999999999987654 3568999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccC
Q 003975 275 RPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
..+++++||++.++++++.. ...|+++..
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~--------~~~~~~~~~ 108 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE--------DRNWMGRRE 108 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc--------CCCCCcccc
Confidence 99999999999999999873 556887753
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=141.40 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=85.7
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~ 436 (782)
.+.|.|+|++|+||+..+.. |. ||||++.+. + ...||++++++.||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~---g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVS---GLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCccccC---CCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 46899999999999987643 56 999999983 3 25789999999999999999999874 3457999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|++.++ ++++||++.++++. .+....+|++|..
T Consensus 91 d~d~~~------~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT------KNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC------CCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 999876 89999999999999 3556788999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=140.75 Aligned_cols=117 Identities=22% Similarity=0.372 Sum_probs=92.8
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-C----eEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-N----YKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
..+++.|. +..+.|.|+|++|++|+..|..|.+||||++++. + .+++|+++++|.||+|||+|.|.+. +..
T Consensus 3 i~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 3 LLLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred EEEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 45566665 4568999999999999999999999999999983 2 3579999999999999999999985 344
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
...|.|+|||++.. ++++||++.+.....-.. ...+|+.|....+.
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~~~ 127 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQRT 127 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCCCC
Confidence 55799999999988 999999998664332211 24678888776554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=139.09 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEEC----CEEEeecccCCCCCCeeccEEEEEeeCC----------------
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYG----NKWIRTRTILDTLAPRWNEQYTWDVYDP---------------- 427 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~----~~~~rT~~~~~t~~P~wne~~~f~v~~~---------------- 427 (782)
|+|.|++|+||+.+ .. +. ||||+|+++ +...||+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~---g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-SN---GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-cC---CCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999876 32 56 999999998 7789999999999999999999998764
Q ss_pred CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCC
Q 003975 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480 (782)
Q Consensus 428 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 480 (782)
...|.|+|||++..+ ++++||++.|+|.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 358999999999765 89999999999999988777899999987554
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=132.32 Aligned_cols=112 Identities=30% Similarity=0.494 Sum_probs=88.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccC--CCCeEEEEEEeCCCC-CCce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERL--QSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|+.. |.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 479999999 9999999999998653 245688888988876 6777
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 118 lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|.+.+.. +..+ ...++||+|.+..+.....|+|++.+.|
T Consensus 78 ~g~v~l~~--~~~~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLG-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCC-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77765544 4332 2367999998866543468999999865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-15 Score=133.22 Aligned_cols=111 Identities=32% Similarity=0.497 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~ 443 (782)
|+|+|++|+||+.. +. ||||+++++++ .++|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999864 45 99999999885 589999999 9999999999999863 457888889887543
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++..+|++.| ..+..+.....||+|..... +....|+|+|+++|
T Consensus 74 -----~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVAL--SKLDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEe--cCcCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 5666776555 45555777899999986544 23457999999865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=141.33 Aligned_cols=117 Identities=24% Similarity=0.368 Sum_probs=94.8
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEec--cC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~--~~ 98 (782)
..+++.|+- ..+.|.|+|++|+||+..+..|.+||||++.+.. .++||++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 4 LLLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred EEEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 456666665 5679999999999999999899999999999942 2569999999999999999999986 45
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
....|.|.|||++.+ ++++||++.+++...-.. ...+|+.+....+.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~~ 129 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKGQ 129 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCCC
Confidence 567999999999988 999999999987644221 13578877665443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=141.15 Aligned_cols=117 Identities=30% Similarity=0.348 Sum_probs=94.3
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--C
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~--~ 98 (782)
...+++.|. +..+.|.|+|++|++|+..+..|.+||||+|++++ .+++|++++++.||+|||+|.|.+.. .
T Consensus 3 ~l~~~l~y~--~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 3 DICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred EEEEEeEEc--CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 344555554 46789999999999999999999999999999952 35789999999999999999999853 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
....|.|+|||++.. +|++||++.+++..... ...+|+++...++.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~~~~ 127 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLASPRR 127 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhCCCC
Confidence 345899999999988 89999999999876421 25678877665433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=136.73 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=79.3
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-------CEEEeecccCCCCCCeeccEEEEEeeCC-----CceEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-------NKWIRTRTILDTLAPRWNEQYTWDVYDP-----CTVIT 432 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-------~~~~rT~~~~~t~~P~wne~~~f~v~~~-----~~~l~ 432 (782)
.+.|+|+|++|+||+.++.. +. ||||+|++. ....||+++++|+||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~---g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSN---GSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCC---CCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 46899999999999987643 56 999999985 3479999999999999999999998752 45899
Q ss_pred EEEEeCCcCCCCCCCCCCCccEEEEEEcccccC
Q 003975 433 IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET 465 (782)
Q Consensus 433 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
|+|||++.++ +|++||++.++|+++..
T Consensus 92 ~~V~d~d~~~------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC------CCcEeEEEEEeHHHCCc
Confidence 9999999875 79999999999999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-15 Score=140.98 Aligned_cols=118 Identities=34% Similarity=0.499 Sum_probs=96.0
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG--N---YKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|...+++.|+- ..+.|.|+|++|+||+..+..|.+||||+|++. + .+.+|++++++.||+|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~--~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNP--TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcC--CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 44566777765 567899999999999999989999999999983 2 3579999999999999999999975 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.....|.|+|||++.. ++++||++.+++.+... ...+|++|....+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~~ 127 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPRQ 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCCC
Confidence 3456899999999988 89999999999987621 24567777665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=135.72 Aligned_cols=90 Identities=23% Similarity=0.354 Sum_probs=78.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCCcccceeEEEecC--CCCCeEEEEEEEcc
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLG--N---QLRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~ 274 (782)
+.|.|+|++|++|+..+..+.+||||++++. + ..++|+++++ +.||.|||.|.|.+.. ..+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 4699999999999999988999999999983 2 3578888886 9999999999998753 23568999999999
Q ss_pred CCCCCceeEEEEEeCCCc
Q 003975 275 RPGKDEILGRELIPVRNV 292 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l 292 (782)
..+++++||++.+++...
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 999999999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=135.57 Aligned_cols=90 Identities=33% Similarity=0.556 Sum_probs=82.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--eeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
+|+|+|++|++|+..|..|.+||||++++++++ .+|+++++|.||+|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999999999999999999864 5788899999999999999998766678999999999998 9999
Q ss_pred eEEEEEEccccCC
Q 003975 118 VGRVSLDLSQVPL 130 (782)
Q Consensus 118 lG~~~v~l~~l~~ 130 (782)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-15 Score=136.65 Aligned_cols=103 Identities=26% Similarity=0.339 Sum_probs=84.0
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCCC--CCeEEEEEEE
Q 003975 200 KLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d 272 (782)
..+.|.|+|++|++|+..+.++.+||||+|+++. ..++|+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 3456999999999999999999999999999942 3567888776 999999999999986432 3479999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
++..+++++||++.+++.... ....+|+++.
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~ 122 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNATG-------AELRHWSDML 122 (136)
T ss_pred CCCCCCCceeEEEEECCccCC-------hHHHHHHHHH
Confidence 999999999999999997642 1245666554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=135.55 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=83.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 273 (782)
.+.|.|+|++|++|+..+..+.+||||++.+.. +.++|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 356999999999999999889999999999832 3568888886 99999999999998532 344799999999
Q ss_pred cCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 274 IRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 274 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
+..+++++||++.++..... .....+|+.+...
T Consensus 92 d~~~~~~~iG~~~l~~~~~~------~~~~~~W~~l~~~ 124 (135)
T cd08410 92 NVKSSNDFIGRIVIGQYSSG------PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCCcEEEEEEEcCccCC------chHHHHHHHHHhC
Confidence 99999999999987754332 1224667766543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=132.04 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=92.9
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
.|+|+|++|+ |...+. .+. ||||+|+++++ ..+|++++++.||+|||.|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~~~---~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSNSK---SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCCCc---CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCC---
Confidence 6899999998 554432 355 99999999987 8999999999999999999999864 579999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCce-----EEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRI-----YTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
.|++||++.++|+++..... ...|+++...........|+|++++
T Consensus 75 ---~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ---ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999865322 4569999854421234579998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=139.00 Aligned_cols=103 Identities=18% Similarity=0.315 Sum_probs=85.7
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v 435 (782)
..+.|.|.|++|+||++.+ . +. ||||++.+.+ ++.||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~---~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-H---AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred CCCeEEEEEEEecCCCccc-C---CCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3469999999999999875 2 45 9999999842 36799999999999999999999963 235899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||.+.++ ++++||++.|+......+....+|..+..
T Consensus 89 ~~~~~~~------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVR------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCC------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999765 89999999999877666666677877764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=133.72 Aligned_cols=104 Identities=27% Similarity=0.315 Sum_probs=85.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeCC---CceEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITI 433 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i 433 (782)
.+..|.|+|+|++|++|++++.. |. ||||+|.+. + ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~---g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDIT---GFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccC---CCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 34568999999999999988643 56 999999983 2 357999999999999999999998642 247999
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 87 ~v~d~~~~~------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999999876 899999999998743 444578888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-15 Score=138.09 Aligned_cols=117 Identities=25% Similarity=0.337 Sum_probs=93.5
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|...+++.|+- ..+.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~--~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNP--TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECC--CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 34556666665 5679999999999999988 88899999999853 3679999999999999999999985 4
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+....|.|+|||++.. ++++||++.+.......+. ...+|.++....
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~p 126 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSKP 126 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhCC
Confidence 5567899999999988 9999999999865544321 245676666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-15 Score=136.93 Aligned_cols=117 Identities=24% Similarity=0.311 Sum_probs=93.6
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--C
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~--~ 98 (782)
...+++.|.- ..+.|.|+|++|++|+..+..|.+||||+|++.. .+++|++++++.||+|||+|.|.+.. .
T Consensus 2 ~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 2 ELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred eEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 3456666664 6789999999999999999999999999999842 35799999999999999999999753 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
....|.|+|||++.. ++++||++.+++..... ....|+++...++.
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-------~~~~w~~~~~~~~~ 126 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-------GREHWNEMLANPRK 126 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-------hHHHHHHHHHCCCC
Confidence 345799999999998 89999999998763211 24567777665444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=133.90 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=84.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeeeecccCCCCCCcccceeEEEecC--CCCCeEEEEEEE
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN------QLRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVED 272 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d 272 (782)
.+.|.|+|++|+||+..+.++.+||||++++.. .+++|+++++ +.||+|||+|.|.+.. .....|.|+|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 356999999999999999889999999999943 2468888886 9999999999999864 345699999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
++..+++++||++.+++..... ....+|+.+.
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~~------~~~~hW~~~l 124 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSGE------EEEEHWNEMK 124 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCCc------hHHHHHHHHH
Confidence 9999999999999999875432 1235676654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=130.26 Aligned_cols=117 Identities=30% Similarity=0.496 Sum_probs=99.2
Q ss_pred eEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeEeeeccccCCC-CCccccEEEEEeccCCCCeEEEEEEeC
Q 003975 40 HYLCVNVVKARNLPVMD--VSGSLDPYVEVKLG------NYKGITKHLEKNQ-NPVWNQIFAFSKERLQSSLLEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~kT~~i~~t~-nP~Wne~f~f~~~~~~~~~L~i~V~d~ 110 (782)
..|.|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 57899999999993 4568999988876 999999999998765567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 111 DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 111 d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+..++++||++.+++.++..+ ..|++|.+..|.....|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 877899999999999999543 3689999887764467999988764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=135.63 Aligned_cols=102 Identities=28% Similarity=0.506 Sum_probs=89.0
Q ss_pred cCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EeeeecccCCCCC
Q 003975 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQ-----------------------------LRVTRPSHVRSVN 247 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~-----------------------------~~~T~~~~~~t~n 247 (782)
..|..+.|+|+|++|++|.+.+.+|.+||||+|.++.. .++|+++++ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 45788999999999999999999999999999999632 367888876 999
Q ss_pred CcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEc
Q 003975 248 PVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 248 P~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
|.|||+|.|.+.......|.|+|||++ +++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~------~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS------CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence 999999999998766789999999987 8899999999999873 136899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=129.00 Aligned_cols=101 Identities=28% Similarity=0.433 Sum_probs=86.6
Q ss_pred CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCC
Q 003975 57 VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPD 135 (782)
Q Consensus 57 ~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~ 135 (782)
.+|.+||||+|+++++ ..+|+++.++.||+|||.|.|.+.+.....|.|+|+|++..++++||.+.++|+++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhh--
Confidence 4688999999999885 5799999999999999999999987667889999999997789999999999999975421
Q ss_pred CCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 136 SPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 136 ~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
...+||+|.+. ..|+|++++.|.+
T Consensus 87 --~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 87 --VGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred --ccceeEECCCC-----CCCEEEEEEEEec
Confidence 35799999862 3699999988764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=137.62 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=87.4
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v 435 (782)
..+.|.|.|++|+||+..+. .+. ||||++.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~---~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDG---KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCccC---CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 34799999999999998753 355 9999999854 257999999999999999999998764 47899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||.+..+ ++++||.+.+++++ .+...++|++|..
T Consensus 89 ~d~~~~~------~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVG------RNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCC------CCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 9998765 89999999999999 5666789999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-15 Score=155.81 Aligned_cols=105 Identities=34% Similarity=0.556 Sum_probs=93.7
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-CCCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~d~ 112 (782)
-..|.|+|.+|+||.++|.+|.|||||++++-. .+++|++++.|+||+|||+|.|.+.. .....|.|+|||+|.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 357999999999999999999999999999942 47899999999999999999999863 346789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
. ++||+|+.++.+++|.+.+ ...||.|..+.
T Consensus 259 TsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred cccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9 9999999999999999863 56799998765
|
|
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-15 Score=137.06 Aligned_cols=116 Identities=31% Similarity=0.361 Sum_probs=97.1
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC--C
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL--Q 99 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~--~ 99 (782)
.++++.|+- ..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|+++.++.||.|||+|.|.+... .
T Consensus 3 i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 3 LLLSLSYLP--TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred EEEEEEeeC--CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 455666654 4579999999999999998889999999999964 257999999999999999999998643 3
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
...|.|+|||.+.. ++++||.+.+++.+ .+. ...+|++|.+..++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~ 126 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK 126 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence 67899999999987 99999999999999 221 36789999887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=132.13 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=86.7
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 003975 200 KLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d 272 (782)
..+.|.|+|++|++|+..+..+.+||||++.+.+ ..++|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 4467999999999999999889999999999953 4578999886 99999999999998643 34689999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccC
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
++..+++++||++.++++... ....+|+++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~ 121 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLK 121 (133)
T ss_pred CCCCCCccEEEEEEEecCCCC-------chHHHHHHHHh
Confidence 998889999999999997522 12567886643
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-15 Score=150.31 Aligned_cols=224 Identities=19% Similarity=0.246 Sum_probs=170.2
Q ss_pred ceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEe--c-cCC
Q 003975 28 KTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSK--E-RLQ 99 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~--~-~~~ 99 (782)
++..-|+- ....+..+|..|++|+.++.+|..|||++..++. .+.+|++..+++||.|+|+-.... . +..
T Consensus 83 ~~~~~y~~--~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDS--ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhh--hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 34444444 3457889999999999999999999999999975 357899999999999999866542 2 233
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC-----CcccceEEEEEEEecccCCcccc
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-----DQTTKGEIMLAVWMGTQADESFA 173 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-----~~~~~G~l~l~~~~~~~~d~~~~ 173 (782)
...+++.|.|.+.+ .++++|+..+.+..|...... ....|+.-.-+.+ ..+.+|+|.+++.|.++.
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k---~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~----- 232 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRK---SFNICLEKSLPSERADRDEDEERGAILISLAYSSTT----- 232 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcc---hhhhhhhccCCcccccccchhhccceeeeeccCcCC-----
Confidence 46688999999998 999999999998888755332 2334443322211 113578888887554321
Q ss_pred ccccCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCC
Q 003975 174 EAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNP 248 (782)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP 248 (782)
..+.|++..|..|..+|.++-+||||..++.. .+++|.+.++ +.+|
T Consensus 233 ----------------------------~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p 283 (362)
T KOG1013|consen 233 ----------------------------PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNP 283 (362)
T ss_pred ----------------------------CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCc
Confidence 23899999999999999999999999999953 3467777776 9999
Q ss_pred cccceeEEEecCC--CCCeEEEEEEEccCCCCCceeEEEEEeCC
Q 003975 249 VWNEEHMFVASEP--FEDLIIVTVEDRIRPGKDEILGRELIPVR 290 (782)
Q Consensus 249 ~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~l~ 290 (782)
.|++.|.|.+... ....+.|.|||++..+..+++|-+...+.
T Consensus 284 ~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 284 EFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999987533 35589999999998888899987766544
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-14 Score=128.80 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=97.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC-C---
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-G--- 113 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~-~--- 113 (782)
...|.|.|.+|++|+.++ +|||++.++++. .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccc
Confidence 457999999999999876 899999999976 6999999999999999999976443 4679999976542 2
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc--------ccceEEEEEEEecc
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ--------TTKGEIMLAVWMGT 166 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~--------~~~G~l~l~~~~~~ 166 (782)
++++||.+.|++.++..+. ..++||+|.+..+.. ...+.|++++.|.+
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 6799999999999998643 478999999877553 24579999998874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=127.26 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=82.5
Q ss_pred CCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc
Q 003975 388 KLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE 464 (782)
Q Consensus 388 ~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
.|. ||||+|.++++ ..+|++++++.||+|||.|.|.+.++ ...|.|.|||++.+ +|++||++.++|+++.
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-------HDPVLGSVSISLNDLI 82 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-------CCCeEEEEEecHHHHH
Confidence 456 99999999885 58999999999999999999999875 56899999999864 6899999999999985
Q ss_pred C-CceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 465 T-DRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 465 ~-~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
. +.....||+|.. .+.|+|++++.|.|
T Consensus 83 ~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 4 445689999973 34699999988754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=128.73 Aligned_cols=106 Identities=28% Similarity=0.411 Sum_probs=88.9
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEE-ec--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~-~~-- 96 (782)
|...+++.|+- ..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|. +.
T Consensus 2 G~~~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 34456666665 4578999999999999998889999999999842 46899999999999999999996 32
Q ss_pred cCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCC
Q 003975 97 RLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRV 132 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~ 132 (782)
+.....|.|+|||++..++++||++.++++++..+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 234578999999998778899999999999998753
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-14 Score=129.07 Aligned_cols=98 Identities=24% Similarity=0.244 Sum_probs=83.9
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC----C
Q 003975 45 NVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI----G 113 (782)
Q Consensus 45 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~----~ 113 (782)
-.++|++|+..+..|.+||||+|++.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3478999999999999999999999764 4899999999999999999998654446789999999996 5
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
++++||++.+++.+|..... ...|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG-----QKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC-----cEEEEEccC
Confidence 99999999999999986532 557888844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-14 Score=159.37 Aligned_cols=125 Identities=25% Similarity=0.414 Sum_probs=106.3
Q ss_pred eeEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEECCe-Eee
Q 003975 39 MHYLCVNVVKARNLPVMDV------------------------------------------SGSLDPYVEVKLGNY-KGI 75 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~k 75 (782)
-|.|.++|.+|++|+.+|. .+++||||+|.++++ +.|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3788999999999986321 247899999999886 569
Q ss_pred eccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-cc
Q 003975 76 TKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TT 154 (782)
Q Consensus 76 T~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~ 154 (782)
|++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.|+|.++..+.. ...|++|.+..++. ..
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPPKA 166 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCCCC
Confidence 99999999999999999999875 4689999999999977999999999999987643 67999999987765 34
Q ss_pred ceEEEEEEEecccCC
Q 003975 155 KGEIMLAVWMGTQAD 169 (782)
Q Consensus 155 ~G~l~l~~~~~~~~d 169 (782)
.|+|++++.|.+...
T Consensus 167 ~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 167 ETAIFIDMKFTPFDQ 181 (868)
T ss_pred CcEEEEEEEEEEccc
Confidence 689999999987654
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=126.44 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=81.4
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v 435 (782)
.+.|+|+|++|+||++.+.. +. ||||++.+. ....||++++++.||.|||.|.|....+ ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~---~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDAN---GLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCC---CCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 46899999999999987542 56 999999983 2469999999999999999999974432 46899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEe
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 474 (782)
||++.+ .+++||.+.++|+++..++....|+.
T Consensus 91 ~d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-------GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-------CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999864 58899999999999988775555543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-15 Score=151.32 Aligned_cols=104 Identities=24% Similarity=0.440 Sum_probs=92.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCCcccceeEEEecCCC-CCeEEEEEEEccCC
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLG-----NQLRVTRPSHVRSVNPVWNEEHMFVASEPF-EDLIIVTVEDRIRP 276 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~~~~t~nP~wne~f~f~v~~~~-~~~l~i~V~d~~~~ 276 (782)
.|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++. ++||+|||+|.|.+.... +..|.|+|||+|+.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 499999999999999999999999999993 25688999997 999999999999986543 55899999999999
Q ss_pred CCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCC
Q 003975 277 GKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 277 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 313 (782)
++++++|+.++.++++++. ....||.|-...
T Consensus 260 sRNDFMGslSFgisEl~K~------p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA------PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc------chhhHHHHhhhh
Confidence 9999999999999999864 378899886553
|
|
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=126.15 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEeeeecccCCCCCCcc-cceeEEEecCCCCCeEEEE
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGN-------------QLRVTRPSHVRSVNPVW-NEEHMFVASEPFEDLIIVT 269 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-------------~~~~T~~~~~~t~nP~w-ne~f~f~v~~~~~~~l~i~ 269 (782)
..|++++|++|+ .+..|++||||++++.. +.++|+++++ +.||+| ||.|.|.+. ..+.|.|+
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcC--CCCEEEEE
Confidence 678999999998 67789999999999942 4689999986 999999 999999985 35689999
Q ss_pred EEEccCCCC---CceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEE
Q 003975 270 VEDRIRPGK---DEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISF 335 (782)
Q Consensus 270 V~d~~~~~~---d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i 335 (782)
|||++..++ +++||++.++++++... ........||+|+.... ....+|+|.+++
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~--~~~~~~~~~~~l~k~~~---------~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLER--HAIGDQELSYTLGRRTP---------TDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccc--ccCCceEEEEECCcCCC---------CCcEEEEEEEEe
Confidence 999865433 79999999999999854 23344678999875531 345567776654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=125.41 Aligned_cols=116 Identities=23% Similarity=0.348 Sum_probs=92.9
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEE------CCEEEeecccCCCC-CCeeccEEEEEeeCCC-ceEEEEEEeC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKY------GNKWIRTRTILDTL-APRWNEQYTWDVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~------~~~~~rT~~~~~t~-~P~wne~~~f~v~~~~-~~l~i~v~d~ 438 (782)
.|+|+|++|+||+.++. ...+. ||||++++ +....||+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999998752 02355 99999999 34669999988776 9999999999998764 5799999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+.. +|++||++.++|+++..+ ..|++|...... ....|.|.+.+++
T Consensus 82 ~~~-------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC-------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CCcceeEEEEEEE
Confidence 853 689999999999999765 368899764332 1335899988875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=126.11 Aligned_cols=89 Identities=25% Similarity=0.422 Sum_probs=81.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEI 281 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~ 281 (782)
|+|+|++|++|+..+..+.+||||+++++++. .+|+++++ +.||.|||.|.|.+..+....|.|+|||++..+++++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 89999999999999999999999999999865 56777776 9999999999999877777899999999999999999
Q ss_pred eEEEEEeCCCcc
Q 003975 282 LGRELIPVRNVP 293 (782)
Q Consensus 282 iG~~~i~l~~l~ 293 (782)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=119.94 Aligned_cols=86 Identities=27% Similarity=0.502 Sum_probs=66.6
Q ss_pred EEEEEEEeecCCCCccCCCCCCCcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCc-CC
Q 003975 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCY-VN 442 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~-~~ 442 (782)
|.|+|++|+||+. ..||||++.+++ ..+||+++++|+||+|||.|+|++.. ...|.+.|||++. ..
T Consensus 1 L~V~V~~A~~L~~-------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFKQ-------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCCC-------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccc
Confidence 5799999999962 249999999853 46999999999999999999999974 6799999999831 00
Q ss_pred CCCCCCCCCccEEEEEEccc
Q 003975 443 GSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~ 462 (782)
..+..++|+++|++.|.|..
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccCcccEEEEEEEEECH
Confidence 00112389999877776644
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-14 Score=173.63 Aligned_cols=117 Identities=23% Similarity=0.428 Sum_probs=99.6
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCC--ceEEEEEEeCCc
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPC--TVITIGVFDNCY 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~--~~l~i~v~d~~~ 440 (782)
...|.|.|+|++|+||. + +.+.+||||++.+|++ +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~--~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--Q--SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--c--ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 44899999999999998 2 2223499999999955 889999999999999999999998874 689999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcE---EEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGE---LHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~---i~l~~~~ 495 (782)
++ ++.+|.+.|+|.++..++.++.||+|.. ..+|.|+ |++++++
T Consensus 2053 f~-------kd~~G~~~i~l~~vv~~~~~~~~~~L~~----~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2053 FG-------KSSLGKVTIQIDRVVMEGTYSGEYSLNP----ESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred cC-------CCCCceEEEEHHHHhcCceeeeeeecCc----ccccCCCcceEEEEEEe
Confidence 74 5599999999999999999999999984 2245687 8887654
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=125.79 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=82.9
Q ss_pred EEEEeecCCCCccCCCCCC-CcEEEEEECCE-------EEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCc--
Q 003975 372 GILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCY-- 440 (782)
Q Consensus 372 ~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~-- 440 (782)
..++|++|+..+.. |. ||||+|++.+. ..||++++++.||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~---g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVL---SKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCC---CCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 44799999988643 56 99999999553 4999999999999999999998753 45689999999996
Q ss_pred --CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 441 --VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 441 --~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
++ +|++||++.++++++..+.....|++|..
T Consensus 82 ~~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 54 89999999999999998877788999953
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=120.86 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=68.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeC------
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDK------ 110 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~------ 110 (782)
|.|+|++|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999996 5589999999963 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCceeEEEEEEccc
Q 003975 111 -DIG-KDDFVGRVSLDLSQ 127 (782)
Q Consensus 111 -d~~-~d~~lG~~~v~l~~ 127 (782)
|.. +|+++|.+.+.|..
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 344 89999888887653
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-13 Score=168.80 Aligned_cols=121 Identities=20% Similarity=0.341 Sum_probs=101.8
Q ss_pred cccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCC-CCeEEEEEEeCCC
Q 003975 35 LVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQ-SSLLEVTVKDKDI 112 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~-~~~L~i~V~d~d~ 112 (782)
+...+|.|.|+|++|+||. +..|.+||||++++|++ +.||++++++.||+|||+|.|.++++. .++|+|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3456799999999999998 44789999999999965 889999999999999999999998754 4679999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceE---EEEEEEec
Q 003975 113 GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE---IMLAVWMG 165 (782)
Q Consensus 113 ~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~---l~l~~~~~ 165 (782)
++++.||.++|++.++..+.. ...||+|.+.+.+ .|. |.+.+.|.
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k---~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNK---DGSSRTLEIEFQWS 2100 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-----eeeeeecCccccc---CCCcceEEEEEEec
Confidence 966699999999999997643 6789999964322 466 88887654
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=119.68 Aligned_cols=87 Identities=23% Similarity=0.377 Sum_probs=75.5
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEECCe------EeeeccccCCCCCccccEEEEEeccCC----CCeEEEEEEeCCCC
Q 003975 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNY------KGITKHLEKNQNPVWNQIFAFSKERLQ----SSLLEVTVKDKDIG 113 (782)
Q Consensus 44 V~v~~a~~L~~~d~~g~~dPyv~v~~~~~------~~kT~~i~~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~d~~ 113 (782)
+-.++|++|+..|..|.+||||+|++.+. .++|++++++.||+|| +|.|....+. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 45569999999999999999999998643 5899999999999999 7888865332 57899999999998
Q ss_pred -CCceeEEEEEEccccCCC
Q 003975 114 -KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~ 131 (782)
+|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 999999999999999854
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-13 Score=145.59 Aligned_cols=119 Identities=29% Similarity=0.519 Sum_probs=104.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC-------
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI------- 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~------- 112 (782)
..+.++|++|.+|.++|..|++||||.+.+|..+.+|++|.+.+||+|||.|.|...+. ...+.+.|||.|.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999874 7889999999884
Q ss_pred --C---CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 113 --G---KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 113 --~---~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
. +|+|+|+..|.+..|-.. .+.||.|+....++.+.|-|.+.+...-
T Consensus 374 qkl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEE
Confidence 1 799999999999888643 6789999998777777888877766543
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-13 Score=137.90 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=163.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEe--cCC-CCCeEEEEEEEcc
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVA--SEP-FEDLIIVTVEDRI 274 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v--~~~-~~~~l~i~V~d~~ 274 (782)
.+..++..|++|.+++.++..|||++..++. .+.+|++..+ +.||.|+|+..+.. .+. ....+++.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 4889999999999999999999999999964 3477888876 99999999865542 222 2447888999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCC
Q 003975 275 RPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDL 354 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~ 354 (782)
.....+++|+..+++..+..++ ......|+.-..+.. .......+..|.+.+++.++
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q---~k~f~~cl~~~lp~~----rad~~~~E~rg~i~isl~~~---------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQ---RKSFNICLEKSLPSE----RADRDEDEERGAILISLAYS---------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhh---cchhhhhhhccCCcc----cccccchhhccceeeeeccC----------------
Confidence 9889999999999988887543 233455554433311 11111235668887777542
Q ss_pred CccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC-
Q 003975 355 QTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP- 427 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~- 427 (782)
....-+.|++++|..|..+|+. |- ||||..++.. -+.+|.+.++|.+|.||+.|.|.+...
T Consensus 230 ---------s~~~~l~vt~iRc~~l~ssDsn---g~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgd 297 (362)
T KOG1013|consen 230 ---------STTPGLIVTIIRCSHLASSDSN---GYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGD 297 (362)
T ss_pred ---------cCCCceEEEEEEeeeeeccccC---CCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccc
Confidence 2235788999999999998764 55 9999999843 248899999999999999999998753
Q ss_pred --CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc
Q 003975 428 --CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 428 --~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
...+.|.|||.+.-+ ..+++|-+...+...
T Consensus 298 La~~kv~lsvgd~~~G~------s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 298 LAYKKVALSVGDYDIGK------SNDSIGGSMLGGYRR 329 (362)
T ss_pred hhcceEEEeecccCCCc------CccCCCccccccccc
Confidence 458999999998633 678888877655443
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=110.40 Aligned_cols=81 Identities=41% Similarity=0.595 Sum_probs=74.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|+..+..+.+||||++++++ ...+|+++.++.||.|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988889999999999987 679999999999999999999998765566799999999998 7999
Q ss_pred eEEEE
Q 003975 118 VGRVS 122 (782)
Q Consensus 118 lG~~~ 122 (782)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=114.98 Aligned_cols=87 Identities=24% Similarity=0.225 Sum_probs=72.3
Q ss_pred EEEEEeecCCCCccCCCCCC-CcEEEEEECC------EEEeecccCCCCCCeeccEEEEEeeC-----CCceEEEEEEeC
Q 003975 371 LGILSAKNLMQMKSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLAPRWNEQYTWDVYD-----PCTVITIGVFDN 438 (782)
Q Consensus 371 v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~rT~~~~~t~~P~wne~~~f~v~~-----~~~~l~i~v~d~ 438 (782)
+..++|++|+.++.. +. ||||++++.+ ..++|++++++.||+|| .|.|++.. +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~d~~---~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKKDFF---GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCCCCC---CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 345699999988653 56 9999999854 25999999999999999 78887642 256999999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCc
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+.++ +|++||++.++++++..++
T Consensus 80 d~~~------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCC
Confidence 9876 8999999999999998544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=104.46 Aligned_cols=82 Identities=33% Similarity=0.481 Sum_probs=75.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDE 280 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 280 (782)
|+|+|++|++|+..+..+.+||||++++++ ..++|+++++ +.+|.|+|.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987777778999999999998899
Q ss_pred eeEEEE
Q 003975 281 ILGREL 286 (782)
Q Consensus 281 ~iG~~~ 286 (782)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-12 Score=134.25 Aligned_cols=123 Identities=25% Similarity=0.401 Sum_probs=100.6
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
...++++|+.|+||.+.|.. |+ ||||.+.+|..+.||+++...+||+|||.|.|++.+..+.|.+.|||+|.-- +
T Consensus 294 sakitltvlcaqgl~akdkt---g~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dl-k 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKT---GKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDL-K 369 (1283)
T ss_pred ceeeEEeeeecccceecccC---CCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccH-H
Confidence 45899999999999988643 77 9999999999999999999999999999999999998899999999987421 0
Q ss_pred CC------CCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 445 KD------DAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 445 ~~------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.+ ..+|+|||+..|.+..|...- +-||+|+..+.+.. ..|.|+|.|..
T Consensus 370 sklrqkl~resddflgqtvievrtlsgem--dvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccch--hhhcchhhccchhh-ccceEEEEEEE
Confidence 00 468999999999999986543 78999987554322 24766666554
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-11 Score=134.87 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=105.5
Q ss_pred eEEEEEEEEeecCCCCcc---------------CCCCCC-CcEEEEEECCE-EEeecccCCC-CCCeeccEEEEEeeCCC
Q 003975 367 GTLELGILSAKNLMQMKS---------------KDGKLT-DAYCVAKYGNK-WIRTRTILDT-LAPRWNEQYTWDVYDPC 428 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~---------------~~~~~~-dpyv~v~~~~~-~~rT~~~~~t-~~P~wne~~~f~v~~~~ 428 (782)
|.|.++|++|++|++++. ..++++ ||||.|.+++. ..||+++.+. .||+|||.|..++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999987421 012345 99999999875 5799999885 69999999999999998
Q ss_pred ceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 429 TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 429 ~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
..+.|.|.|.+.+| ..+||++.||+.+|..+..+++|+++.....+-.+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g-------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG-------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC-------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999885 56999999999999999999999999975543333345899999998744
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-11 Score=108.92 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=77.8
Q ss_pred EEEEEEEEeecCCCCccCC-CCCC-CcEEEEEECC---EEEeecccCCCCC--CeeccEEEEEeeCC-------------
Q 003975 368 TLELGILSAKNLMQMKSKD-GKLT-DAYCVAKYGN---KWIRTRTILDTLA--PRWNEQYTWDVYDP------------- 427 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~-~~~~-dpyv~v~~~~---~~~rT~~~~~t~~--P~wne~~~f~v~~~------------- 427 (782)
.|+|.|++|+|++..+... |... ||||++.+.+ ++.+|.++++++| |+||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3799999999977654422 2223 9999999954 5799999999999 99999999987641
Q ss_pred -----------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCc
Q 003975 428 -----------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 428 -----------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
...|.|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 248999999999887 8999999999999997764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=100.85 Aligned_cols=99 Identities=44% Similarity=0.648 Sum_probs=86.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+||+.+.. .+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998877778899999999998 889999999999999999999999774578899999999987 799999
Q ss_pred EEEEEccccC-CCCCCCCCCCCEEEEe
Q 003975 120 RVSLDLSQVP-LRVPPDSPLAPQWYRL 145 (782)
Q Consensus 120 ~~~v~l~~l~-~~~~~~~~~~~~w~~L 145 (782)
.+.+++.++. ... ...+|++|
T Consensus 81 ~~~~~l~~l~~~~~-----~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGK-----EGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCC-----cCcceecC
Confidence 9999999998 322 35677765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=101.64 Aligned_cols=98 Identities=30% Similarity=0.512 Sum_probs=84.3
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~~~~~ 445 (782)
|.|.|++|++|..... .+. ||||++.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~~---~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAKDL---NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCcCC---CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 4689999999987532 245 9999999988 88999999999999999999999987 5689999999998654
Q ss_pred CCCCCCccEEEEEEccccc-CCceEEEEEee
Q 003975 446 DDAKDQRIGKVRIRLSTLE-TDRIYTHYYPL 475 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L 475 (782)
.+.+||++.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999998 66666778765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=100.48 Aligned_cols=91 Identities=32% Similarity=0.486 Sum_probs=78.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE---EEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK---WIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~---~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~ 443 (782)
+.+.|++|+||...... +. +|||++++.+. ..+|+++.++.||.|||.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~~---~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKDKK---GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCCCC---CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67899999999875421 34 99999999764 89999999999999999999999887 789999999998654
Q ss_pred CCCCCCCCccEEEEEEcccccCCce
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRI 468 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~ 468 (782)
.+.+||.+.+++.++..+..
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred -----CCceeEEEEEEHHHcccCcc
Confidence 68999999999999977653
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=99.51 Aligned_cols=91 Identities=43% Similarity=0.654 Sum_probs=81.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY---KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999998876678999999999875 79999999999999999999999876578999999999987 7999
Q ss_pred eEEEEEEccccCCCC
Q 003975 118 VGRVSLDLSQVPLRV 132 (782)
Q Consensus 118 lG~~~v~l~~l~~~~ 132 (782)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999997653
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=124.76 Aligned_cols=175 Identities=23% Similarity=0.334 Sum_probs=117.9
Q ss_pred eeehhhchhhHHHHHHHHH---HHH---HHhhccccccCchhhHHHHHHHHHHHHccch--h-HHHHHHHHHHHHHhhcc
Q 003975 563 MWSLRKCKANFQRIVELLS---AIC---RWFNDICTWRNPVETALLHVLFLTLVFYPEL--I-LPTIFLYLFLIGMWNYR 633 (782)
Q Consensus 563 ~~s~~~~~~n~~rl~~~~~---~~~---~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l--~-~p~~~l~l~~~~~~~~~ 633 (782)
.+|+..+..|+.|+...+. .++ +.+.++++|++|..|..++++|+++|++|.+ + +|++++ ++++++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4677888999999988887 666 9999999999999999999999999999988 3 454444 4445555666
Q ss_pred cCCCCCCCCCcccchhhhcchhhhhcccCCCcccccccCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHh
Q 003975 634 LRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQA 713 (782)
Q Consensus 634 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~vq~~l~~~a~~~e~~~n 713 (782)
.++..+.. .+.. + ..+.+.+.+..|+ +...-..+...++.+||.|+.+.+.++.+..
T Consensus 81 ~~~p~~~~---~~~~----------~----~~~~~~~~~~~pt------l~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~ 137 (359)
T PF06398_consen 81 YRHPSPTS---SLPK----------S----YEDHNPEPSEGPT------LDKPSREIVMNLRDLQNKMEDLSDPYDFLSS 137 (359)
T ss_pred eecCCCcc---cccc----------c----ccccCCCcCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55411100 0000 0 0000111111122 1100223334555689999998888888875
Q ss_pred ----cccccChhhHHHHHHHHHHHHHHH----hhchhhhhhheeeee-cccCCCCCC
Q 003975 714 ----ILCWRDLRATFIFLIFSFIWAVFS----YVTPFEVVAVLIGLY-MLRHPRFRS 761 (782)
Q Consensus 714 ----~~~w~~p~~s~~~~~~l~~~~~~~----~~vP~r~i~l~~g~~-~~r~P~~~~ 761 (782)
.++|+++..|.+++.+|+++.+.+ ++||+|++++++|.. ++.||..+.
T Consensus 138 ~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 138 FLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred hhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 457999999998887777666654 468999999999933 677998764
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=123.54 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=95.1
Q ss_pred eEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 40 HYLCVNVVKARNLPVM-----DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
..|.|+|+.|.+++.. +....+||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987511 2235679999999966 35678887788999999999999988777889999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 110 KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 110 ~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|.. +|+|+|++.+++..|..+- ++.+|.+..|.......|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 8999999999999998763 567999988876445567666644
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=102.85 Aligned_cols=91 Identities=31% Similarity=0.322 Sum_probs=77.8
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eEeeeccccCCCC--CccccEEEEEecc---------------
Q 003975 42 LCVNVVKARNLPVMD--VSG--SLDPYVEVKLGN---YKGITKHLEKNQN--PVWNQIFAFSKER--------------- 97 (782)
Q Consensus 42 L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~kT~~i~~t~n--P~Wne~f~f~~~~--------------- 97 (782)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+.++++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999976543 356 499999999975 4689999999999 9999999988643
Q ss_pred --------CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCC
Q 003975 98 --------LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRV 132 (782)
Q Consensus 98 --------~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~ 132 (782)
.....|.++|||.|.+ +|++||++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999999 9999999999999998753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=128.77 Aligned_cols=257 Identities=22% Similarity=0.275 Sum_probs=163.0
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--eeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~- 113 (782)
+....++|.|++|-+|.+.|.+|.+|||+++.+|++. -++..+.+|+||+|++-|.+...-+....|.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 4445678999999999999999999999999999865 6889999999999999999988877778899999999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC-------------------CCc--ccceEEEEEEEecccCCcc-
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK-------------------GDQ--TTKGEIMLAVWMGTQADES- 171 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~-------------------g~~--~~~G~l~l~~~~~~~~d~~- 171 (782)
+|+.||+..++|..-............+.|.....+ +.. ...++. ..+.|....+..
T Consensus 690 ~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d 768 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYD 768 (1105)
T ss_pred ccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhc
Confidence 899999999998865432221122233333332221 110 011111 122332211100
Q ss_pred -----------ccccc----------------cCCcccccc---ccccccc-----------------cccccCCceEEE
Q 003975 172 -----------FAEAW----------------HSDAHNISQ---KNLANTR-----------------SKVYFSPKLYYL 204 (782)
Q Consensus 172 -----------~~~~~----------------~~~~~~~~~---~~~~~~r-----------------s~~~~~p~~~~L 204 (782)
....| |........ .+..+.+ ......|...-+
T Consensus 769 ~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~l 848 (1105)
T KOG1326|consen 769 EKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYEL 848 (1105)
T ss_pred ccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeE
Confidence 00000 000000000 0000000 001134566789
Q ss_pred EEEEEEeecCCCCCCCC----CCCcEEEEEECC---eEeeeecccC---CCCCCcccceeEEEecC--------------
Q 003975 205 RVFVFEAQDLVPSDKGR----APDACVRIQLGN---QLRVTRPSHV---RSVNPVWNEEHMFVASE-------------- 260 (782)
Q Consensus 205 ~V~V~~a~~L~~~~~~~----~~dpyv~v~l~~---~~~~T~~~~~---~t~nP~wne~f~f~v~~-------------- 260 (782)
+|.|..-.+....+.++ .+|-||+--+-+ ++++|.+.++ +-.|-.|.-.|.|....
T Consensus 849 rviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~w 928 (1105)
T KOG1326|consen 849 RVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSW 928 (1105)
T ss_pred EEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcc
Confidence 99998887776665432 689999887753 3455555442 23455565555443210
Q ss_pred -------CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 003975 261 -------PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ 294 (782)
Q Consensus 261 -------~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~ 294 (782)
..-..|.|+|||.|.+++|+++|..+++|+++..
T Consensus 929 s~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~ 969 (1105)
T KOG1326|consen 929 SLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPA 969 (1105)
T ss_pred ccccccccCchheEEEecccCccChhhhhhheeechhhCcC
Confidence 0122799999999999999999999999999874
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=123.70 Aligned_cols=123 Identities=18% Similarity=0.275 Sum_probs=103.7
Q ss_pred eEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCe-EeeeccccCC-CCCccccEEEEEeccCC
Q 003975 40 HYLCVNVVKARNLPVMD------------------VSGSLDPYVEVKLGNY-KGITKHLEKN-QNPVWNQIFAFSKERLQ 99 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~kT~~i~~t-~nP~Wne~f~f~~~~~~ 99 (782)
|.|.|+|.+|++|++.+ ..+++||||.|.+++. ..||+++.+. .||.|||.|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 78999999999998632 1367899999999984 6899999885 5999999999999764
Q ss_pred CCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcc-cceEEEEEEEecccC
Q 003975 100 SSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQT-TKGEIMLAVWMGTQA 168 (782)
Q Consensus 100 ~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~-~~G~l~l~~~~~~~~ 168 (782)
...+.|.|+|.|.+...+||.+.+++.++..+.. .+.|+++.+.+|+.. ...+|++++.|.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 4789999999999988899999999999998643 778999999887762 234899999998643
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=121.11 Aligned_cols=118 Identities=27% Similarity=0.395 Sum_probs=94.9
Q ss_pred eeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEE
Q 003975 39 MHYLCVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V 107 (782)
...|.|+|+.|.+|+.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999987532 1123459999999954 467999999999999999999998876677899999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|+|.. .++++|++.+++..|..+- +|++|.+..|.....-.|.+.+++
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999987 8999999999999998763 589999888876334455555543
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-11 Score=129.04 Aligned_cols=126 Identities=26% Similarity=0.529 Sum_probs=108.1
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------e------------------EeeeccccCCCCC
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------Y------------------KGITKHLEKNQNP 85 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~------------------~~kT~~i~~t~nP 85 (782)
.+...|.|.+.+|++|.++|.+|.||||+...+-. + .+-|+++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 45667889999999999999999999999887621 0 1358999999999
Q ss_pred ccccEEEEEeccCCCCeEEEEEEeCCC----------------------------------C---CCceeEEEEEEcccc
Q 003975 86 VWNQIFAFSKERLQSSLLEVTVKDKDI----------------------------------G---KDDFVGRVSLDLSQV 128 (782)
Q Consensus 86 ~Wne~f~f~~~~~~~~~L~i~V~d~d~----------------------------------~---~d~~lG~~~v~l~~l 128 (782)
.|+|.|.|.+++.+.+.+++.+||+|. . .|||+|.+.++|+++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999871 1 489999999999999
Q ss_pred CCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 129 PLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
... ..++||.|+..+..+.+.|.+.+.+|+.+..
T Consensus 271 P~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 271 PPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred Ccc------hHHHHhccCcccccccccceEEEEEEEeeec
Confidence 764 3789999999887777999999999998643
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=116.53 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=83.7
Q ss_pred eeEEEEEEEEeecCCCC--ccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEE
Q 003975 366 IGTLELGILSAKNLMQM--KSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~--~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~ 436 (782)
...|.|+|+.|++++.. ...+.... ||||+|.+.| ...+|.+..++.||+|||+|.|++..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35899999999998621 11111234 9999999854 3578887788999999999999998874 47999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecC
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLT 479 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 479 (782)
|+|..+ +|+++|+..||++.|..|- ++++|.+..
T Consensus 488 D~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 488 DYEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred ecCCCC------CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999754 7999999999999999985 678887643
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=91.42 Aligned_cols=84 Identities=29% Similarity=0.395 Sum_probs=73.8
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCce
Q 003975 42 LCVNVVKARNLPVMD---VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~ 117 (782)
|.|+|.+|+|+...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+++.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 579999999998777 5788999999999985 889987 5899999999999953 788999999997767778
Q ss_pred eEEEEEEccccCC
Q 003975 118 VGRVSLDLSQVPL 130 (782)
Q Consensus 118 lG~~~v~l~~l~~ 130 (782)
||..-+.+++|..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998865
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=114.14 Aligned_cols=119 Identities=25% Similarity=0.484 Sum_probs=100.1
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeecc-EEEEEeeCC---CceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNE-QYTWDVYDP---CTVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne-~~~f~v~~~---~~~l~i~v~d~~~~ 441 (782)
|.|-|+|..|++||-||.. ... |.||.|++++..+||.+..+++||.||. -|.|+|.|. ..+|.|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999999854 233 9999999999999999999999999984 589999874 56999999999998
Q ss_pred CCCCCCCCCCccEEEEEEcccc----------cCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTL----------ETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+ .++-||++.|++..| -++.....|+|+.+.-. | -.|+|.+-++..
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 7 899999999999987 23567899999987322 2 258888877663
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=116.31 Aligned_cols=119 Identities=22% Similarity=0.253 Sum_probs=92.0
Q ss_pred eeEEEEEEEEeecCCCCc---cCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMK---SKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~---~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v 435 (782)
...|.|+|+.|++++... ..+.... ||||+|.+-| ...+|+++.++.||+|||+|.|++..|. ..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 358999999999985321 1112234 9999999843 5689999999999999999999998873 5799999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|+|..+ .|+++|++.||++.|..|. +|++|.+.. | ...+..+|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--G-EKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--C-CCCCCEEEEEEEE
Confidence 9998765 7999999999999999986 599997533 2 2235566666663
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=117.63 Aligned_cols=118 Identities=25% Similarity=0.345 Sum_probs=95.7
Q ss_pred eeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEE
Q 003975 39 MHYLCVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V 107 (782)
...|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+.-++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987521 2234579999999954 357899998999999999999998877778999999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|+|.. +|+|+|++.+++..|..+- +..+|.+..|.......|.+.+.+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999987 9999999999999998763 356999988876445577777654
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=111.50 Aligned_cols=198 Identities=21% Similarity=0.235 Sum_probs=141.1
Q ss_pred CCCCCCCCCcEEEEEEC-------------------CeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-
Q 003975 54 VMDVSGSLDPYVEVKLG-------------------NYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 54 ~~d~~g~~dPyv~v~~~-------------------~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~- 113 (782)
..|..++.||.|.+... .+..+|.++.+.+||.|-+.|.+.......+.|++.++|.+..
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~ 83 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT 83 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc
Confidence 33445666777666552 1345899999999999999999887766688999999997643
Q ss_pred ----CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCcccccccccc
Q 003975 114 ----KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLA 189 (782)
Q Consensus 114 ----~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 189 (782)
..+|+|++...+..+....... .+|.-.++.....|+|.+.+.-....+
T Consensus 84 ~~l~~~dflg~~~c~l~~ivs~~~~~-------~~l~~~~~~~~~~g~iti~aee~~~~~-------------------- 136 (529)
T KOG1327|consen 84 PDLSSADFLGTAECTLSQIVSSSGLT-------GPLLLKPGKNAGSGTITISAEEDESDN-------------------- 136 (529)
T ss_pred CCcchhcccceeeeehhhhhhhhhhh-------hhhhcccCccCCcccEEEEeecccccC--------------------
Confidence 7889999999999998653211 122222222224677777652211000
Q ss_pred ccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C----eEeeeecccCCCCCCcccceeEEEecC---
Q 003975 190 NTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLG--N----QLRVTRPSHVRSVNPVWNEEHMFVASE--- 260 (782)
Q Consensus 190 ~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~--~----~~~~T~~~~~~t~nP~wne~f~f~v~~--- 260 (782)
....-.++|++|..++..+++|||..++-. . ..++|.++++ +++|.|.+. ......
T Consensus 137 -------------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~ 201 (529)
T KOG1327|consen 137 -------------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCS 201 (529)
T ss_pred -------------ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcc
Confidence 022334568999999999999999988763 1 3578999886 999999763 332222
Q ss_pred -CCCCeEEEEEEEccCCCCCceeEEEEEeCCCcc
Q 003975 261 -PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVP 293 (782)
Q Consensus 261 -~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~ 293 (782)
..+..+.+.+||++..+++++||++..+++.+.
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 224688899999999999999999999998886
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=114.71 Aligned_cols=117 Identities=25% Similarity=0.398 Sum_probs=94.3
Q ss_pred eEEEEEEEEeeCCC--CC----CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEE
Q 003975 40 HYLCVNVVKARNLP--VM----DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~--~~----d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 108 (782)
..|.|+|+.|.+++ .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998753 11 2234679999999954 4679999999999999999999988766788999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 109 DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 109 d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|+|.. .|+++|++.+++..|..+- +..+|.+..|.......|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 99987 8999999999999998763 456999988876344566666643
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-09 Score=87.99 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=70.2
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|.|+|..|+|+...++....+. ||||.|++++. ++||++ +.||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999998764212244 99999999886 899998 58999999999999 567899999999852
Q ss_pred CCCCCccEEEEEEccccc
Q 003975 447 DAKDQRIGKVRIRLSTLE 464 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~ 464 (782)
+..-.||-.-|.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 25568999999999973
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=111.60 Aligned_cols=118 Identities=22% Similarity=0.348 Sum_probs=96.4
Q ss_pred eEEEEEEEEeeCCCC---C---CCCCCCCcEEEEEECC-----eEeeeccccCCCCCcc-ccEEEEEeccCCCCeEEEEE
Q 003975 40 HYLCVNVVKARNLPV---M---DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVW-NQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~---~---d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~W-ne~f~f~~~~~~~~~L~i~V 107 (782)
..|.|+|++|.+|+. . +.....||||+|.+-| .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 1 1223579999999854 3579999988899999 99999998876678899999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+|+|.. .|+++|++.+++..|..+- +..+|.+..|.....++|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999977 8999999999999997752 4679999888864567788888765
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=112.93 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=95.8
Q ss_pred eEEEEEEEEeeCCCCC-CC---CCCCCcEEEEEECC-----eEeeecccc-CCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 40 HYLCVNVVKARNLPVM-DV---SGSLDPYVEVKLGN-----YKGITKHLE-KNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-d~---~g~~dPyv~v~~~~-----~~~kT~~i~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
-.|.|+|+.+.+++.. +. +..+||||.|++-| ...+|++++ ++-||.|+|+|.|.+.-++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976543 22 35689999999966 357999555 45699999999999988777899999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 110 KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+|.. +|+|+|+..+++..|..+- +-.+|.+..|+......|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9999 8999999999999998763 3458999888765567777777654
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=111.28 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=89.5
Q ss_pred eeEEEEEEEEeecCCCCcc---CCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKS---KDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v 435 (782)
...|.|+|+.+++++.... .+.... ||||+|.+-| ...||++..++.||.|||+|.|++..|. ..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3579999999998753211 112234 9999999833 3578999899999999999999998874 6899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ +|+++|+..||++.|..|- +.++|.+....... .-.|.+.+.|
T Consensus 548 ~d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9998754 8999999999999999885 47788753322111 2355555443
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-09 Score=109.92 Aligned_cols=125 Identities=31% Similarity=0.482 Sum_probs=103.6
Q ss_pred eeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEeeeccccCCCCCcccc-EEEEEec--cCCCCeEEEEEEeCCCC-
Q 003975 39 MHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQ-IFAFSKE--RLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne-~f~f~~~--~~~~~~L~i~V~d~d~~- 113 (782)
.|.|.|+|+.|++||.+|. +...|.||++++++..+||.+..+++||.||. .|.|.++ +++...|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 3678999999999999987 45689999999999999999999999999995 6888886 56788999999999999
Q ss_pred CCceeEEEEEEccccCCCC-----CCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 114 KDDFVGRVSLDLSQVPLRV-----PPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~-----~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.+|-||.+.+++..|.... ...++....|+++.+.-.. .+|+|.+-+...
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg--irgeinvivkvd 136 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG--IRGEINVIVKVD 136 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc--ccceeEEEEEEe
Confidence 9999999999999886432 1124566789999885322 478888776654
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-08 Score=109.87 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=89.0
Q ss_pred eeEEEEEEEEeecCC--CCc-cCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEE
Q 003975 366 IGTLELGILSAKNLM--QMK-SKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~--~~~-~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v 435 (782)
...|.|+|+.+++++ ... ..+.... ||||+|.+.| ...||+++.++.||.|||.|+|.+..|. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 358999999999853 111 1112234 9999999843 4689999999999999999999998874 6899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ..-.|.+.+.|
T Consensus 531 ~d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEF 580 (581)
T ss_pred EECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEe
Confidence 9998654 7999999999999999885 5778875333211 12355555443
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-08 Score=109.55 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=92.1
Q ss_pred eEEEEEEEEeecCCC---CccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCee-ccEEEEEeeCCC-ceEEEEE
Q 003975 367 GTLELGILSAKNLMQ---MKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRW-NEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 367 g~l~v~v~~a~~L~~---~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~w-ne~~~f~v~~~~-~~l~i~v 435 (782)
..|.|+|+.|++|+. .+..+.... ||||+|.+-| ..+||+++.++.||.| ||.|.|.+..|. ..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 111112234 9999999833 4589999999999999 999999998874 6899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ...+|.+.+.+..
T Consensus 511 ~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 9998654 7999999999999998885 5678875333221 2367888777644
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=109.37 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCCCCccCCCCCC--CcEEEEEECC-----EEEeec-ccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT--DAYCVAKYGN-----KWIRTR-TILDTLAPRWNEQYTWDVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~-----~~~rT~-~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~ 438 (782)
.|.|.|+.++|+.+.......|. ||||.|++-| ...+|+ +..++.||.|+|+|+|++..|. +-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999998776432211233 9999999855 358999 5567889999999999999884 5899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|..+ +|+|+|+..||++.|..|- +-+||.+..... -..-.|.+.+.+
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~-~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEA-LSSASLFVRIAI 743 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCCCcc-ccceeEEEEEEE
Confidence 9866 8999999999999999885 467777532211 123556666554
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-09 Score=115.31 Aligned_cols=100 Identities=31% Similarity=0.481 Sum_probs=86.9
Q ss_pred eeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EeeeccccCCCCCccccEEEEEecc----
Q 003975 29 TASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGITKHLEKNQNPVWNQIFAFSKER---- 97 (782)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~kT~~i~~t~nP~Wne~f~f~~~~---- 97 (782)
++..|... -..|.|.|+.|+++.+-|.+|.|||||.|.++.. .++|+|+.+|+||+|+|.|+|.+..
T Consensus 938 vr~~y~~n--~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 938 VRAYYNGN--AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEEeecc--ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 44455543 3589999999999999999999999999999873 4799999999999999999999863
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPL 130 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~ 130 (782)
.+...|.|+|.|+|.. .+||-|++.+.|.++..
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2367899999999999 99999999999998864
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-08 Score=88.96 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=82.5
Q ss_pred EEEEEEEeecCCCCccC-----------CCCCCCcEEEEEE----CCEEEeecccCCCCCCeeccEEEEEee--------
Q 003975 369 LELGILSAKNLMQMKSK-----------DGKLTDAYCVAKY----GNKWIRTRTILDTLAPRWNEQYTWDVY-------- 425 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~-----------~~~~~dpyv~v~~----~~~~~rT~~~~~t~~P~wne~~~f~v~-------- 425 (782)
|.|.|++|.||+..... ..-|-++||++.+ +++..+|+++.++..|.||..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999864321 1224499999985 467899999999999999999999886
Q ss_pred CC--------CceEEEEEEeCCcCCCCC----CCCCCCccEEEEEEcccccC-CceEEEEEee
Q 003975 426 DP--------CTVITIGVFDNCYVNGSK----DDAKDQRIGKVRIRLSTLET-DRIYTHYYPL 475 (782)
Q Consensus 426 ~~--------~~~l~i~v~d~~~~~~~~----~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L 475 (782)
.. ...+.++||+...-+.++ ...+|-+||.+.||+.+|.. ...+.+|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 348999999988654333 14567789999999999865 4568999985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=108.17 Aligned_cols=119 Identities=22% Similarity=0.273 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCCcc---CCCCCCCcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKS---KDGKLTDAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~---~~~~~~dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~~~~ 441 (782)
|.|.++|++|+-+...-. .-+.++||||.|.+++. ..|| .+..||+|||.|..++..+. ..+.|.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~--- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK--- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC---
Confidence 899999999984322100 01234499999999875 5788 55669999999999999886 6899999992
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCce-EEEEEeeeecCCCCCCcCcEEEEEEEEEEcch
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRI-YTHYYPLLLLTPSGLKNNGELHLALRFTCTAW 500 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~~ 500 (782)
-.+||++.||+.+|..+.. +++|+++.....+-. +..+|+++++|.+...
T Consensus 84 --------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 84 --------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAEL 134 (758)
T ss_pred --------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhh
Confidence 4799999999999999866 999999997554322 2259999999987543
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=100.77 Aligned_cols=179 Identities=21% Similarity=0.184 Sum_probs=125.5
Q ss_pred EeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC----CCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 235 LRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRP----GKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 235 ~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
..+|.++.. .+||.|.+.|.........+.+++.++|.+.. ...+++|++...++.+.... ....-..++
T Consensus 42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~-----~~~~~l~~~ 115 (529)
T KOG1327|consen 42 VGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS-----GLTGPLLLK 115 (529)
T ss_pred ccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh-----hhhhhhhcc
Confidence 357888886 99999999998888777788999999997643 56789999999999887432 111112222
Q ss_pred CCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC
Q 003975 311 KPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT 390 (782)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~ 390 (782)
.. .....|.|.+.+.-.. .. -....-.++|++|.++|.+ ++
T Consensus 116 ~~-----------~~~~~g~iti~aee~~------------------------~~-~~~~~~~~~~~~ld~kd~f---~k 156 (529)
T KOG1327|consen 116 PG-----------KNAGSGTITISAEEDE------------------------SD-NDVVQFSFRAKNLDPKDFF---SK 156 (529)
T ss_pred cC-----------ccCCcccEEEEeeccc------------------------cc-CceeeeeeeeeecCccccc---cc
Confidence 11 1122366655553100 00 1222334568999988765 66
Q ss_pred -CcEEEEEE--CC----EEEeecccCCCCCCeeccEEEEEee-----CCCceEEEEEEeCCcCCCCCCCCCCCccEEEEE
Q 003975 391 -DAYCVAKY--GN----KWIRTRTILDTLAPRWNEQYTWDVY-----DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRI 458 (782)
Q Consensus 391 -dpyv~v~~--~~----~~~rT~~~~~t~~P~wne~~~f~v~-----~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i 458 (782)
|||..+.- +. ..++|.+++++++|.|.+ |..+.. ++...+.|.+||++.-+ ++++||++.-
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~t 229 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQT 229 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC------CcCceeEecc
Confidence 99999975 22 348999999999999964 444333 34578999999999765 7899999999
Q ss_pred EcccccC
Q 003975 459 RLSTLET 465 (782)
Q Consensus 459 ~l~~l~~ 465 (782)
+++++..
T Consensus 230 t~~~~~~ 236 (529)
T KOG1327|consen 230 TLSELQE 236 (529)
T ss_pred cHHHhcc
Confidence 9999864
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=103.83 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=94.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccc-cEEEEEeccCCCCeEEEEEEeCCC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWN-QIFAFSKERLQSSLLEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wn-e~f~f~~~~~~~~~L~i~V~d~d~ 112 (782)
-.|.|+|+.|+.|+... .|.+.|||+|.+-| ..++|.++.+++||+|| |+|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 36899999999999544 45678999999954 34677778888999999 999999999988999999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+ ...|||++.+++..+..+- +-.+|.+.-.+......|++.+.+.+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEeccc
Confidence 9 6679999999999998753 234776654333345677777766543
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=103.57 Aligned_cols=98 Identities=18% Similarity=0.328 Sum_probs=81.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EE-EeecccCCCCCCeec-cEEEEEeeCC-CceEEEEEEe
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KW-IRTRTILDTLAPRWN-EQYTWDVYDP-CTVITIGVFD 437 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~-~rT~~~~~t~~P~wn-e~~~f~v~~~-~~~l~i~v~d 437 (782)
-.|.|.|+.|+.|+. .|+|. .|||.|++-| .+ +.|.++.+.+||+|| |.|+|.|.+| ...|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 489999999999995 45566 7999999833 33 455566789999999 9999999998 4689999999
Q ss_pred CCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+|.++ ...|||++..|+..|..|- +.+||.+
T Consensus 1141 eDmfs------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99987 6679999999999998874 5677775
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-07 Score=106.75 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=95.9
Q ss_pred cccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC---
Q 003975 324 KEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN--- 400 (782)
Q Consensus 324 ~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~--- 400 (782)
.++..|+|+++|++. .|.|.|.|..|+||+-.. +|...||||+.++-.
T Consensus 1508 p~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lq--dg~~P~pyVK~YLlPdp~ 1558 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQ--DGQDPDPYVKTYLLPDPR 1558 (1639)
T ss_pred ccccCceEEEEEEEc---------------------------CceEEEEhhhhccccccc--CCCCCCcceeEEecCCch
Confidence 345667888888763 379999999999996543 444449999999943
Q ss_pred --EEEeecccCCCCCCeeccEEEEEee---CC-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEe
Q 003975 401 --KWIRTRTILDTLAPRWNEQYTWDVY---DP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474 (782)
Q Consensus 401 --~~~rT~~~~~t~~P~wne~~~f~v~---~~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 474 (782)
.+.||+++++|.||.|||..++.-. .- ...|.++||.++.+. .+.++|.+.|+|.++...+...+||+
T Consensus 1559 k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~------en~~lg~v~i~L~~~~l~kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1559 KTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLL------ENVFLGGVNIPLLKVDLLKESVGWYN 1632 (1639)
T ss_pred HhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccccee------eeeeeeeeecchhhcchhhhhcceee
Confidence 3589999999999999999888622 12 368999999998775 78999999999999987777779999
Q ss_pred eee
Q 003975 475 LLL 477 (782)
Q Consensus 475 L~~ 477 (782)
|..
T Consensus 1633 lg~ 1635 (1639)
T KOG0905|consen 1633 LGA 1635 (1639)
T ss_pred ccc
Confidence 964
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=98.59 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=91.5
Q ss_pred eEEEEEEEEeeCCCCC----CC-CCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 40 HYLCVNVVKARNLPVM----DV-SGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~----d~-~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+..||.|+|.|.+.+....+..+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7899999999843221 11 122399999999984 5788 556699999999999976544679999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
...+||.+.+++.++..+.. ..+.|+++.+.+|+.....+|++++.|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 46799999999999988632 2679999999888763224999999998654
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-07 Score=103.90 Aligned_cols=114 Identities=30% Similarity=0.425 Sum_probs=94.9
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEE---ecc
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFS---KER 97 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~---~~~ 97 (782)
..++++.|. .|.|.|.|.-|++|+--..+..+||||+.++.. .++||+++.+|.||.|||...+. .+.
T Consensus 1514 qV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~ 1589 (1639)
T KOG0905|consen 1514 QVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEI 1589 (1639)
T ss_pred eEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhh
Confidence 567777776 579999999999997655577899999999964 36899999999999999998766 334
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+....|++.||..+.. .+.++|.+.++|.++...+. ...||.|...
T Consensus 1590 l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1590 LQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred hhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 5567899999999998 99999999999999876542 4589999753
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00023 Score=75.38 Aligned_cols=244 Identities=17% Similarity=0.232 Sum_probs=157.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEec-------cCCCCeEEEEEEeCCCC-
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKE-------RLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~-------~~~~~~L~i~V~d~d~~- 113 (782)
+.|+|++|++.+... .-.-.+..+++++...|..+..+..|.||....|.++ ..+...|++++|..|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998763 3356799999999999999999999999999999875 34578899999998843
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC-cccceEEEEEEEecccCCccccccc--c----CCccc---
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD-QTTKGEIMLAVWMGTQADESFAEAW--H----SDAHN--- 182 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~-~~~~G~l~l~~~~~~~~d~~~~~~~--~----~~~~~--- 182 (782)
+.+.||.+.++|................||+|.+.+++ +..+-+|.+.+...........+.. . .+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 88999999999999822222222357899999887432 1245688888777644321000000 0 00000
Q ss_pred -----cc----------cccccccccccccCCceEEEEEEEEEeecCCCCC----C--CCCCCcEEEEEECCeEeeeecc
Q 003975 183 -----IS----------QKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSD----K--GRAPDACVRIQLGNQLRVTRPS 241 (782)
Q Consensus 183 -----~~----------~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~----~--~~~~dpyv~v~l~~~~~~T~~~ 241 (782)
.+ +++.-+....- ..-....|.|++..|++|...- . .+....|....+-+....+..-
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 00 00111111100 0224568999999999987652 1 1235667777776666666655
Q ss_pred cCCCCCCccc-ceeE-EEecCC---------CCCeEEEEEEEccCCCCCceeEEEEEeCCCcccc
Q 003975 242 HVRSVNPVWN-EEHM-FVASEP---------FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQR 295 (782)
Q Consensus 242 ~~~t~nP~wn-e~f~-f~v~~~---------~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 295 (782)
+. ..+|.|. |.-. +.+... ....|.|.++. .+..||.+.+++..+...
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 54 7777664 2222 444321 13467777665 467899999999998743
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=65.24 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=67.5
Q ss_pred EEEEEEEeeCCCCCCCCC-CCCcEEEEEE--CC-eEeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCCCCC
Q 003975 42 LCVNVVKARNLPVMDVSG-SLDPYVEVKL--GN-YKGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDIGKD 115 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g-~~dPyv~v~~--~~-~~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~~~d 115 (782)
+.|+|++|++|.....-| .+.-|++=-+ .+ ...||+++++..||+|+|+|.|.+. +++.-.|.|.|+..-+ +.
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RK 79 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RK 79 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-cc
Confidence 368999999998655433 3333544333 33 4689999999999999999999875 5667789999998332 88
Q ss_pred ceeEEEEEEccccCCC
Q 003975 116 DFVGRVSLDLSQVPLR 131 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~ 131 (782)
+.||.|.+.+.++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0087 Score=63.57 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=157.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecC-------CCCCeEEEEEEEcc-C
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASE-------PFEDLIIVTVEDRI-R 275 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~-------~~~~~l~i~V~d~~-~ 275 (782)
+.|.|++|++.+... .-.-.|..+++++...|..+.. +..|.||....+.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998762 3567899999999999998886 9999999999887632 23558999999888 5
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCcccc--C-------C
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVF--D-------E 346 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~--d-------~ 346 (782)
.+..+.||.+-++|....-.+..+.....+||.|-.... + -.+.+-++.+.++++...... + +
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~------~--y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS------K--YKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc------c--cccCCccEEEEEEEeccccccCCccccccccC
Confidence 678889999999998881111133457889999976521 1 112345677777775533210 0 0
Q ss_pred CcccCC-------CCCccc--ccc-------------ccCceeEEEEEEEEeecCCCCccC---CCCCC-CcEEEEEECC
Q 003975 347 STHFSS-------DLQTSS--KSL-------------RKGSIGTLELGILSAKNLMQMKSK---DGKLT-DAYCVAKYGN 400 (782)
Q Consensus 347 ~~~~~~-------d~~~~~--~~~-------------~~~~~g~l~v~v~~a~~L~~~~~~---~~~~~-dpyv~v~~~~ 400 (782)
.+.... ...+.. ..+ .....-.|.|+|-.|+||...-.. ...+. .-|...++-|
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 011111 000000 000 012355788999999998876211 11123 5666667766
Q ss_pred EEEeecccCCCCCCee--ccEEEEEeeCC----------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccC
Q 003975 401 KWIRTRTILDTLAPRW--NEQYTWDVYDP----------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET 465 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~w--ne~~~f~v~~~----------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
....|.......+|.| ++...+.+... ...|.|.++.. +..||.+.|++..+..
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----------CcEEEEEEEEhhhccC
Confidence 6777778788888876 34443666431 34788888884 5689999999999854
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.8e-05 Score=86.90 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=76.8
Q ss_pred cccceeEEEEEEEEeeCCCCCCCCCCCCcE-EEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 35 LVELMHYLCVNVVKARNLPVMDVSGSLDPY-VEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dPy-v~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
...-.|...+++++|+ ++ ..||| +.+.+|.+.+||++.++|.||+||+...|.+........+|.|||.+.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 3344688999999997 33 35886 6667788999999999999999999999999876667789999999999
Q ss_pred -CCceeEEEEEEccccCCC
Q 003975 114 -KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~ 131 (782)
.++++|.|++++.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 999999999999888764
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=7e-05 Score=66.00 Aligned_cols=82 Identities=29% Similarity=0.387 Sum_probs=65.7
Q ss_pred CCcEEEEEE----CCeEeeeecccCCCCCCcccceeEEEec--------C-------CCCCeEEEEEEEccCC-------
Q 003975 223 PDACVRIQL----GNQLRVTRPSHVRSVNPVWNEEHMFVAS--------E-------PFEDLIIVTVEDRIRP------- 276 (782)
Q Consensus 223 ~dpyv~v~l----~~~~~~T~~~~~~t~nP~wne~f~f~v~--------~-------~~~~~l~i~V~d~~~~------- 276 (782)
-++||++.+ +++..+|+++.+ +-.|.|+..++|++. + .....+.++||+++..
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 589999997 346788999987 999999999999875 1 1244899999987532
Q ss_pred ---CCCceeEEEEEeCCCcccccCCCCCCCCceEEc
Q 003975 277 ---GKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 277 ---~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
.+|-.+|.+.||+.+|. ..+.+...||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll----~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLL----TKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHh----hcccCccccccC
Confidence 35668999999999998 456779999975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.1e-05 Score=79.03 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=93.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCccccEEEEEecc---C--------CCCeE
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQIFAFSKER---L--------QSSLL 103 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne~f~f~~~~---~--------~~~~L 103 (782)
..|.+.|+++.+++........|-||++.+- .++.+|+++++|..|.|+|.|.+.+.. . ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3577888888888765434456789988872 267899999999999999999999864 1 24569
Q ss_pred EEEEEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 104 EVTVKDKDIG--KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 104 ~i~V~d~d~~--~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.|++|++..+ +|.++|.|.+.|.-|..... ....++|.+. .+.+.|.|.+++.+.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~DG--RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKDG--RKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccc-----hhhceecccc--ccccCCeeEEEEEEe
Confidence 9999999988 99999999999999876532 4556788774 334689999888765
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=83.43 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=73.3
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCCCcEEEE-EECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCVA-KYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVN 442 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v-~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~ 442 (782)
-.|...+++++|+ |+. +|+|+.+ .+|.+.+||.+.++|.||+||+...|.|... -...+|.|||.+.++
T Consensus 52 ~~~~~~~~~~~~~----~~~-----~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF-----KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred ccCeEEEEeehhh----hcc-----CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 4689999999998 321 4777765 6688999999999999999999999998753 234699999999887
Q ss_pred CCCCCCCCCccEEEEEEcccccCCc
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+++++|.+.++|.++...+
T Consensus 123 ------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 ------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred ------HHHhhhheeecHhhccHHH
Confidence 9999999999998886543
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00012 Score=75.78 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=88.3
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-CC----EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEe
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-GN----KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFD 437 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-~~----~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d 437 (782)
...|.+.|.|++|++|..+.-. +.. +|||+|++ ++ .+.+|+...+|++|-+.++..|.-..+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~--k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGS--KSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCCc--ccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 3478999999999999976321 223 99999998 22 2588999999999999899999888888999999997
Q ss_pred CCcCCCCCCCCCCCccEEEEEEcccccCCc-eEEEEEeeeecCC
Q 003975 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDR-IYTHYYPLLLLTP 480 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~ 480 (782)
.-. .-..+.|+|.++|-+.+|.... ....||+|....+
T Consensus 344 dyg-----Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 344 DYG-----RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred ccc-----ccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 421 2237889999999999998765 7899999986443
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0002 Score=74.72 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---C--CEEEeecccCCCCCCeeccEEEEEeeC-C-----------C
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---G--NKWIRTRTILDTLAPRWNEQYTWDVYD-P-----------C 428 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~--~~~~rT~~~~~t~~P~wne~~~f~v~~-~-----------~ 428 (782)
-.|++.|.++.+++.. .|... |-||++++ . .+..+|.+++.|.+|.|+|.|.+.+.. + .
T Consensus 367 ~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred hHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3677888899888753 12223 99999987 2 356899999999999999999999975 2 1
Q ss_pred ceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCc-CcEEEEEEEE
Q 003975 429 TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKN-NGELHLALRF 495 (782)
Q Consensus 429 ~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~-~G~i~l~~~~ 495 (782)
.-+.|++|++..|. .+|.++|.+.|.|..|++.-.....|+|.+ |.+. .|+|.+++++
T Consensus 444 ~g~kfeifhkggf~-----rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN-----RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred cCeeEEEeeccccc-----cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 26899999987653 389999999999999999888888999985 4332 6899999886
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00064 Score=55.62 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=63.7
Q ss_pred EEEEEEeecCCCCCC-CCCCCcEEEEEE--CC-eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccCCCC
Q 003975 205 RVFVFEAQDLVPSDK-GRAPDACVRIQL--GN-QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIRPGK 278 (782)
Q Consensus 205 ~V~V~~a~~L~~~~~-~~~~dpyv~v~l--~~-~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~ 278 (782)
-++++.|+||.-... ...+.-|++-.+ .. ...+|+... +..||.|+|+|.|.+... ....|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999875443 334556776555 22 346666666 499999999999987543 45588889988 4567
Q ss_pred CceeEEEEEeCCCccc
Q 003975 279 DEILGRELIPVRNVPQ 294 (782)
Q Consensus 279 d~~iG~~~i~l~~l~~ 294 (782)
.+.||.|.+.++++-.
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 8899999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0018 Score=67.34 Aligned_cols=111 Identities=26% Similarity=0.346 Sum_probs=88.0
Q ss_pred ccccceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEE
Q 003975 34 DLVELMHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V 107 (782)
++....|.|.|.|++|++|..+.. ...++|||+|++-+ .+.+|+...+|..|-+.+...|.-.. ....|.++|
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv 341 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTV 341 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEE
Confidence 366778999999999999986643 33789999999843 26789999999999888888877654 478899999
Q ss_pred Ee-CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 108 KD-KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 108 ~d-~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|. +... .+.|+|.+.+-+.+|..... ..-.||+|....
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~----~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSSS----PVIGWYKLFGSS 381 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhccccc----cceeeeeccCCc
Confidence 96 4455 88899999999999876532 345799998754
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.027 Score=64.58 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=74.6
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeeecccCCCCCCcccce-eEEE-ecCCCCCeEEEEEEE
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-------QLRVTRPSHVRSVNPVWNEE-HMFV-ASEPFEDLIIVTVED 272 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~~T~~~~~~t~nP~wne~-f~f~-v~~~~~~~l~i~V~d 272 (782)
+.+.|+|++++-|..++ ...||.|.+-+ ..++|+++..++.||+|+|. |.|. |.-+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 46999999999997765 45899999943 45889999888999999975 7774 445567789999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
. ...+||+-.+|++.+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~--------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA--------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC--------cceeEEecCC
Confidence 6 46799999999988863 3444566554
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.1 Score=48.73 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=81.6
Q ss_pred eEEEEEEEEeecCCCCcc-CCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--------------Cce
Q 003975 367 GTLELGILSAKNLMQMKS-KDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--------------CTV 430 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~-~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--------------~~~ 430 (782)
-.|.++|+.++-....-. ..+... --++-+.+++++++|+.+.-+.+|.|+|.|-|++... ++.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 366677766663321100 001111 3344556799999999999999999999999988532 458
Q ss_pred EEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceE--EEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 431 ITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIY--THYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 431 l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|.+-|.-.|..+ ...++|.-.++-..+...... ..-..|........-..|-|++++++.|
T Consensus 89 ihivli~~d~~~------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSG------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCC------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 899998887644 448999999999998655433 3334443322211124799999988743
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=47.36 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=71.3
Q ss_pred CceEEEEEEEEEeecCCCCCCC--CCCCc--EEEEEECCeEeeeecccCCCCCCcccceeEEEecCCC------------
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKG--RAPDA--CVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF------------ 262 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~--~~~dp--yv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~------------ 262 (782)
|...+|.+.|..++-....-.. +..+. .+-+.+++|.++|+.+.. +.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4456799999998765432211 23333 455555899999999998 999999999999886442
Q ss_pred -CCeEEEEEEEccCCCCCceeEEEEEeCCCcccc
Q 003975 263 -EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQR 295 (782)
Q Consensus 263 -~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 295 (782)
.+.+.+.|.-.|..+...++|+..+++..+..+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 336788887777777779999999999888753
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.066 Score=61.58 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=81.1
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eEeeeccccCC-CCCccccE-EEEEe-ccCCCCeEEEEEE
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGITKHLEKN-QNPVWNQI-FAFSK-ERLQSSLLEVTVK 108 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~kT~~i~~t-~nP~Wne~-f~f~~-~~~~~~~L~i~V~ 108 (782)
.+.+.|+|++|.=|..++ ...||+|.+-| ..++|+++.++ .||+|+|. |.|.- --+.-..|+|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 357899999999887654 45899999854 35789998876 59999985 66652 2233577999999
Q ss_pred eCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 109 DKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 109 d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+.. ..+||+-.+++..|..+- +...|....+.......|.+.+...
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred ccC---CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEee
Confidence 984 579999999999997652 3457777665543344555555443
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.061 Score=50.25 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=33.8
Q ss_pred HHHHHHHHH---HHHHHhhccccccCchhhHHHHHHHHHHHHccchhHHHH
Q 003975 573 FQRIVELLS---AICRWFNDICTWRNPVETALLHVLFLTLVFYPELILPTI 620 (782)
Q Consensus 573 ~~rl~~~~~---~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~ 620 (782)
..|++.++. ..+..++.+++|++|..|.++.+++++++.- -+++|+=
T Consensus 68 a~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r 117 (156)
T PF08372_consen 68 AGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFR 117 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHH
Confidence 344444444 7788999999999999999998887776544 2345553
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.16 Score=48.16 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=69.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
.++|+|+++.++...+ .+|-||++.+ |++ ...|+.+.. .++.|||...|++. + +.+..|.|.||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999988643 4578888765 553 234555543 68999999999864 3 34688999999975
Q ss_pred CC-----CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 112 IG-----KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 112 ~~-----~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
.. ....+|.+.+.|-+... . ..+|...+.+|..+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~--------------------~-Lr~G~~~L~lW~~~ 123 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD--------------------T-LVSGKMALNLWPVP 123 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC--------------------h-hhCCCEEEEEEcCC
Confidence 42 22468888887766321 1 12678888887654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.14 Score=49.34 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=59.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
.++|+|+++.++... ....+-||++.+ |++ ..+|+.+..+.++.|||.+.|++. + +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 589999999999862 234566777644 654 346766665678999999999864 3 34788999999965
Q ss_pred CC-----------------CCceeEEEEEEccc
Q 003975 112 IG-----------------KDDFVGRVSLDLSQ 127 (782)
Q Consensus 112 ~~-----------------~d~~lG~~~v~l~~ 127 (782)
.. .+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 32 13566776666555
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.91 Score=42.27 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=79.4
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEE---Eeeccc-CCCCCCeeccEEEEEeeC---C------CceEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW---IRTRTI-LDTLAPRWNEQYTWDVYD---P------CTVITI 433 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~---~rT~~~-~~t~~P~wne~~~f~v~~---~------~~~l~i 433 (782)
-.+.+.|++..+++.. +...||+...|+.. ..|... .....-.|||.|.+++.- . ...+.|
T Consensus 7 f~~~l~i~~l~~~p~~------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCCC------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 3778899999998851 12566777666653 444433 345677899999998752 1 237899
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccC--CceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET--DRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
.|+....-+ +...||.+.|+|++... ......-++|... .+....|++.+.+..
T Consensus 81 ~v~~~~~~~------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSG------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCC------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 998874211 23699999999999977 3567778888642 234578888887754
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.17 Score=48.85 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=60.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEc
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDR 273 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~ 273 (782)
.++|+|+.+.++... ....+-||++.+ |++. ..|+.+.- ..++.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 389999999999862 234667777655 6654 34544442 567999999999763 34577999999986
Q ss_pred cCCC----------------CCceeEEEEEeCCCc
Q 003975 274 IRPG----------------KDEILGRELIPVRNV 292 (782)
Q Consensus 274 ~~~~----------------~d~~iG~~~i~l~~l 292 (782)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5321 246888888887653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.24 Score=46.93 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=60.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEe----eeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLR----VTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
++|.|+++.++...+ .+|-||++.+ |++.. .|+.+. ..++.|||...|++. -+.+..|.|+||+..
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 899999999987643 3688888866 55432 344333 468999999999764 335779999999975
Q ss_pred CCC----CCceeEEEEEeCCCc
Q 003975 275 RPG----KDEILGRELIPVRNV 292 (782)
Q Consensus 275 ~~~----~d~~iG~~~i~l~~l 292 (782)
..+ ....+|.+.++|-+-
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 421 235799999998763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.011 Score=57.19 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=19.1
Q ss_pred HHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCC
Q 003975 700 MVGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRF 759 (782)
Q Consensus 700 ~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~ 759 (782)
....++..+..++.++.|++|..|..++++|++.+.+..+++...++.+..+..+.=|.+
T Consensus 89 ~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~l 148 (169)
T PF02453_consen 89 VAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKL 148 (169)
T ss_dssp CCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHH
Confidence 344556667888999999999999999999999999999888877776655554444443
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.41 Score=45.46 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 003975 59 GSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQV 128 (782)
Q Consensus 59 g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l 128 (782)
..+|-||++.+ |++ ..+|+.+.-+..+.|||...|++. + +.+..|.|+|||.... +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45678888866 443 236666666677899999999874 3 3467899999998765 677999999887664
Q ss_pred CCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccc
Q 003975 129 PLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESF 172 (782)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~ 172 (782)
. + .| ..|...+.+|....+|...
T Consensus 108 ~-g------------~L--------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 108 D-G------------TL--------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-C------------cE--------ecCCEEEEEEeCCCCCCcc
Confidence 2 1 11 2688888988877666543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.2 Score=41.55 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=78.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EeeeccccCC-CCCccccEEEEEec--------cCCCCeEEEEE
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY---KGITKHLEKN-QNPVWNQIFAFSKE--------RLQSSLLEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~kT~~i~~t-~nP~Wne~f~f~~~--------~~~~~~L~i~V 107 (782)
..+.|+|.+..+++. ...--||+..-++. ..+|+..... ..-.|||.|.+.+. ..+...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 457899999999886 22344555555554 2455544433 35799999998753 13456788999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+..... +...+|.+.++|+++..... .....-++|..... ....|.+++.+...
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~~---~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCKK---SNATLSISISLSEL 137 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCCC---CCcEEEEEEEEEEC
Confidence 887543 33699999999999987421 12445667776522 35788888877644
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.56 Score=44.53 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=59.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
.+.|++....++...+ ....+-||++.+ |++ ...|+......++.|||...|++. + +.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5778888888876521 233556666654 554 234544444478999999999863 3 34688999999976
Q ss_pred CC---CCceeEEEEEEcccc
Q 003975 112 IG---KDDFVGRVSLDLSQV 128 (782)
Q Consensus 112 ~~---~d~~lG~~~v~l~~l 128 (782)
.. ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 357999998887764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.45 Score=45.15 Aligned_cols=87 Identities=25% Similarity=0.343 Sum_probs=59.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
++|.+....+....+ ....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 778888888776521 223567777755 5542 23333322 368999999999753 345779999999986
Q ss_pred CCC--CCceeEEEEEeCCCc
Q 003975 275 RPG--KDEILGRELIPVRNV 292 (782)
Q Consensus 275 ~~~--~d~~iG~~~i~l~~l 292 (782)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 568999999998764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.79 Score=38.32 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=49.6
Q ss_pred CCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccC
Q 003975 61 LDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVP 129 (782)
Q Consensus 61 ~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~ 129 (782)
++-.+.+++.+ ...+|.-... .+..|++.|.+.++. +..|+|.||=+|. ..+-|...+.|.+..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 57889999987 5788876643 689999999999986 5779999987764 456677777777743
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.2 Score=51.07 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=75.9
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCC-C-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCc
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKL-T-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCY 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~-~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~ 440 (782)
...|.|.+++++++||.-.... +| + +-||++.+..+ ..||.+......-.|.|.|..++... ..+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~--kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQ--KGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhc--cCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 3469999999999999865421 23 3 99999999764 67888777777778999999988764 788888998874
Q ss_pred CCCCCCCCCCC--ccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 441 VNGSKDDAKDQ--RIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~--~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-. .++ ..| -|.+..+... .-++-+.|.. ...|++.+++.+
T Consensus 125 q~------RHKLC~~g--~l~~~~v~rq-spd~~~Al~l------ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR------RHKLCHLG--LLEAFVVDRQ-SPDRVVALYL------EPRGQPPLRLPL 166 (442)
T ss_pred hh------hccccccc--hhhhhhhhhc-CCcceeeeec------ccCCCCceeccc
Confidence 21 222 244 3334433321 1133333332 235888888776
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.34 Score=46.04 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=51.0
Q ss_pred CcEEEEEE--CCEE----EeecccCCCCCCeeccEEEEEeeC---C-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEc
Q 003975 391 DAYCVAKY--GNKW----IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRL 460 (782)
Q Consensus 391 dpyv~v~~--~~~~----~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l 460 (782)
|-||.+.+ |++. .+|+.+.-+..+.|||...|+|.- | .+.|.|+|||.+.-+ ....||.+.++|
T Consensus 31 ~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~------~~~~vg~~~~~l 104 (159)
T cd08397 31 DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG------KAVPFGGTTLSL 104 (159)
T ss_pred CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC------CceEEEEEEEee
Confidence 77887755 6654 466666556788999999999863 3 679999999986422 567999999999
Q ss_pred ccc
Q 003975 461 STL 463 (782)
Q Consensus 461 ~~l 463 (782)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 885
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.26 Score=50.27 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred eccccceeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 33 YDLVELMHYLCVNVVKARNLPVMD--VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
.+++...|.|.++++.+++|.... .+-+-+-||++....+ +.+|.+.....-=.|.|+|..++.+ ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 357778899999999999997543 3456789999999875 5678777777777899999998875 4678999999
Q ss_pred CCCC-CCce
Q 003975 110 KDIG-KDDF 117 (782)
Q Consensus 110 ~d~~-~d~~ 117 (782)
++.- ++++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 8876 5554
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.49 Score=45.69 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=63.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEe----eeeccc--C-CCCCCcccceeEEEec---CCCCCeEEEEE
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLR----VTRPSH--V-RSVNPVWNEEHMFVAS---EPFEDLIIVTV 270 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----~T~~~~--~-~t~nP~wne~f~f~v~---~~~~~~l~i~V 270 (782)
.++|+|..+.+++........|-||++.+ |++.. .|+... + -...+.|||...|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 38899999999988765556788888866 65442 333211 1 1235779999999763 34577999999
Q ss_pred EEccCCC---------CCceeEEEEEeCCCc
Q 003975 271 EDRIRPG---------KDEILGRELIPVRNV 292 (782)
Q Consensus 271 ~d~~~~~---------~d~~iG~~~i~l~~l 292 (782)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 457899999988664
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.1 Score=43.36 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=70.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----eeecccc--C--CCCCccccEEEEEec--c-CCCCeEEEE
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNYK----GITKHLE--K--NQNPVWNQIFAFSKE--R-LQSSLLEVT 106 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~kT~~i~--~--t~nP~Wne~f~f~~~--~-~~~~~L~i~ 106 (782)
..+.|+|.++.+++........|-||.+.+ |++. ..|+... + ...+.|||...|++. + +.+..|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 368899999999987765456788888765 5542 3454322 1 235789999999864 2 346889999
Q ss_pred EEeCCCC----------CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 107 VKDKDIG----------KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 107 V~d~d~~----------~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+|+.... .+..||.+.++|-+.. |. ...|...+.+|...
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~-L~~G~~~L~lW~~~ 136 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GV-LRQGSLLLGLWPPS 136 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcch--------------------hh-hccCCEEEEeccCC
Confidence 9996643 2457777777765532 11 13678888887653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.89 E-value=1 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL---RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~---~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
++|+|..+.. +..+......-||++.+ |++. .+|+...- +.++.|||...|++. -+....|.|+||+..
T Consensus 12 friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 7888888863 33333333446666644 5543 25555544 678999999989864 334779999999863
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.55 E-value=3 Score=40.30 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=57.8
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CCEE---EeecccCCCCCCeeccEEEEEeeC---C-CceEEEEEEe
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GNKW---IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITIGVFD 437 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~---~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i~v~d 437 (782)
.++|+|.++.++.. + .... .-||++.+ |++. .+|....-+.++.|||-+.|++.- | .+.|.|+||+
T Consensus 11 ~friki~~~~~~~~-~---~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIPVL-P---RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecccCc-C---CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 67788888874332 1 1112 45666533 6553 366666667789999999998863 3 6799999999
Q ss_pred CCcCCC----------CCCCCCCCccEEEEEEcccc
Q 003975 438 NCYVNG----------SKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 438 ~~~~~~----------~~~~~~d~~lG~~~i~l~~l 463 (782)
...-.. ...+..+..||.+.+.|-+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 632110 00122466788888888773
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=89.79 E-value=2.5 Score=39.32 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=39.6
Q ss_pred eecccCCC-CCCeeccEEEEEeeC---C-CceEEEEEEeCCcCCCCCCCCCC----CccEEEEEEcccc
Q 003975 404 RTRTILDT-LAPRWNEQYTWDVYD---P-CTVITIGVFDNCYVNGSKDDAKD----QRIGKVRIRLSTL 463 (782)
Q Consensus 404 rT~~~~~t-~~P~wne~~~f~v~~---~-~~~l~i~v~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 463 (782)
.|....-+ .++.|||.++|++.- | .+.|.|+||+.+.-. .+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEEEEEEeECC
Confidence 56655555 799999999999852 3 679999999976532 22 6899999999886
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.17 Score=59.15 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=81.5
Q ss_pred CcEEEEEECC-EEEeecccCCC-CCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCce
Q 003975 391 DAYCVAKYGN-KWIRTRTILDT-LAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI 468 (782)
Q Consensus 391 dpyv~v~~~~-~~~rT~~~~~t-~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 468 (782)
++|+.+.+.. ...+|....+. .+|.|.+.|...+..+...+++.+-+.+..| ....+|.+.++...+..+..
T Consensus 139 e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 139 ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred cchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhcccc
Confidence 8999999966 45788888877 6999999998888888889999999988764 57899999999999999999
Q ss_pred EEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 469 YTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 469 ~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
...|+++.....+...+.-.+.+.+.|.+..
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeEeec
Confidence 9999999875553323323455556665543
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=88.93 E-value=3.4 Score=40.14 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=33.2
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI 112 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~ 112 (782)
.++|.+.+.+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 468999999999999999999875 4457889999988543
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=87.92 E-value=4 Score=37.94 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=50.5
Q ss_pred eeccccCC-CCCccccEEEEEec--c-CCCCeEEEEEEeCCCC-CC----ceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 75 ITKHLEKN-QNPVWNQIFAFSKE--R-LQSSLLEVTVKDKDIG-KD----DFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 75 kT~~i~~t-~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d~~-~d----~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.|+...-+ .++.|||.+.|++. + +.+..|.|.||+.+.. .+ ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 66666666 79999999999863 3 3478899999998776 44 6999999887776221 1
Q ss_pred ccCCCCcccceEEEEEEEecccCC
Q 003975 146 EDKKGDQTTKGEIMLAVWMGTQAD 169 (782)
Q Consensus 146 ~~~~g~~~~~G~l~l~~~~~~~~d 169 (782)
..|...+.+|-....+
T Consensus 90 --------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 --------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp --------EEEEEEEE-EET-TTS
T ss_pred --------cCCCEEEEEEcCCCCc
Confidence 3688888887765443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.87 E-value=3.8 Score=35.55 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=48.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
+.+++..+.+.........++-||++.+ |++ ...|+.+.-...+.|||...|++. + +.+..|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5677777777765543333577888865 554 235665555567999999999864 3 34688999999864
|
Outlier of C2 family. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=86.27 E-value=7.5 Score=32.69 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=57.0
Q ss_pred CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceE
Q 003975 391 DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIY 469 (782)
Q Consensus 391 dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~ 469 (782)
+..|++++.++ ..+|.-.. ..+..|++.|.+++.. +..|.|+||=.|. ..+=|-..+.|.+...
T Consensus 10 eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---------RslCav~~lrLEd~~~---- 74 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---------RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred ceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---------hhhhhheeeEhhhhcc----
Confidence 78899999885 56676543 3577799999999864 4799999987663 3455666777777322
Q ss_pred EEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 470 THYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 470 ~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
..-.+| ..+|.+..++.|
T Consensus 75 ~~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 75 EVQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred cceecc--------ccccEEEEEEEe
Confidence 222333 336888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=84.44 E-value=6.1 Score=34.24 Aligned_cols=70 Identities=23% Similarity=0.189 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
+.+.+....+.........++-||++.+ |++. ..|+.+.- ...+.|||...|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666655443333578888866 5543 24444332 556899999999764 345779999999864
|
Outlier of C2 family. |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=84.29 E-value=7.2 Score=38.09 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI 112 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~ 112 (782)
.++|-+.+.+.+|.|+|++.+.+. ......|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 578999999999999999999875 4467899999988654
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=83.56 E-value=4.9 Score=35.33 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=51.4
Q ss_pred EEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc
Q 003975 393 YCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE 464 (782)
Q Consensus 393 yv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
||.+.+-...-.|..+....+|.+|.+-.|.|... ...+.|+++..-. .....||.++|++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-------~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-------SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-------S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-------CCeEEEEEEEeechhhh
Confidence 67777765444444444599999999999988743 3489999998642 14678999999999986
Q ss_pred C--CceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 465 T--DRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 465 ~--~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
. +.....-..|.... |. .-|.|...+++.
T Consensus 75 ~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp H--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 3 22455666665322 22 569999988864
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=83.36 E-value=25 Score=33.73 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCcEEEEEECCeE-eeeecccC-CCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCC
Q 003975 223 PDACVRIQLGNQL-RVTRPSHV-RSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300 (782)
Q Consensus 223 ~dpyv~v~l~~~~-~~T~~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~ 300 (782)
..-|+++.++++. .+|+...- ..-.-.|||.|.+.+.. .-..|.|+||.... ..+..|+++.+++-...... ...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~-~~~ 113 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHT-STD 113 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccc-ccc
Confidence 4678999998865 44444321 13334668889888866 47789999999876 68899999999986544221 111
Q ss_pred CCCCceEEccCC
Q 003975 301 LPDPRWFNLHKP 312 (782)
Q Consensus 301 ~~~~~w~~L~~~ 312 (782)
.....|+.+...
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114566665443
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=82.36 E-value=4.8 Score=39.34 Aligned_cols=58 Identities=9% Similarity=0.121 Sum_probs=34.9
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccc
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
.+.|.+.+++.+|.|+|+|.+.+..+ ..-|.|++++-..-. ....+..+|.+.+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 47888899999999999999988753 568999999976421 11122799999999888
|
|
| >PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain | Back alignment and domain information |
|---|
Probab=81.85 E-value=1.7 Score=35.08 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=33.0
Q ss_pred eCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccC
Q 003975 288 PVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAG 340 (782)
Q Consensus 288 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~ 340 (782)
++..++.+ +++...++|..|.++.+. ....+|++++++++.+.
T Consensus 2 DlgtVY~q--P~H~~~~KW~~L~dP~D~--------~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYNQ--PDHQFYRKWALLTDPDDT--------SAGVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeecC--CCCeeEeceEEecCCCCC--------ccCCceEEEEEEEEEcC
Confidence 45566655 789999999999998642 23456999999998765
|
They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains []. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=80.69 E-value=4.1 Score=39.81 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=32.7
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCCC--C--CceeEEEEEEccc
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDIG--K--DDFVGRVSLDLSQ 127 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~~--~--d~~lG~~~v~l~~ 127 (782)
...|.+.+.+.+|.|+|+|.+.+. ......|.|++++...- + +..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467888889999999999999875 33467899999996653 2 2577777666655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 782 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 6e-11 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 4e-05 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 2e-10 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 2e-09 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 7e-09 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 1e-07 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 1e-07 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 3e-07 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 3e-07 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 1e-06 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 2e-06 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 2e-06 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 3e-06 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 3e-06 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 4e-06 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 7e-06 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 7e-06 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 4e-05 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 3e-05 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 4e-05 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 4e-05 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 4e-05 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 5e-05 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 6e-05 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 1e-04 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 1e-04 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 2e-04 | ||
| 1v27_A | 141 | Solution Structure Of The First C2 Domain Of Rim2 L | 2e-04 | ||
| 2bwq_A | 129 | Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang | 2e-04 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 2e-04 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 3e-04 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 3e-04 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 4e-04 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 4e-04 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 7e-04 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 7e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141 | Back alignment and structure |
|
| >pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 9e-49
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 29 TASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWN 88
++ + V+ + L V V+KA +L D SG DP+ ++LGN + T + KN NP WN
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61
Query: 89 QIFAFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147
++F F + + LEVTV D+D DF+G+V++ L + P Y L++
Sbjct: 62 KVFTFPIKDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKN 113
Query: 148 KKGDQTTKGEIMLAV 162
K +Q KG I L +
Sbjct: 114 KDLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-19
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 356 TSSKSLRKGSIGTLELGILSAKNLMQMKSKD--GKLTDAYCVAKYGNKWIRTRTILDTLA 413
+S S +G L++ +L A +L+ + D GK D +C+ + GN ++T T+ L
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLL---AADFSGKS-DPFCLLELGNDRLQTHTVYKNLN 57
Query: 414 PRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD-DAKDQRIGKVRIRLSTLETDRIYTHY 472
P WN+ +T+ + D V+ + VFD +D D +GKV I L ++ + +
Sbjct: 58 PEWNKVFTFPIKDIHDVLEVTVFD-------EDGDKPPDFLGKVAIPLLSIRDGQ--PNC 108
Query: 473 YPLLLLTPSGLKNNGELHLALRF 495
Y L G ++L +
Sbjct: 109 YVLKNKDLEQ-AFKGVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-16
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR-SVNPVWNEEHMFVASEP 261
L+V V +A DL+ +D D ++LGN T V ++NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTH--TVYKNLNPEWNKVFTFPIKDI 71
Query: 262 FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSL 314
D++ VTV D + LG+ IP+ ++ P + L L
Sbjct: 72 -HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDL 116
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-39
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI------TKHLEKNQNPVWNQ 89
E + V V+ L D+ G+ DPYV V L + TK ++K+ NP WN+
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 90 IFAFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDS-PLAPQWYRLED 147
F Q L V D++ + +DDF+G+V + L +P P P + + L
Sbjct: 76 EILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 148 KKGDQTTKGEIMLAVW 163
+ KG + L +
Sbjct: 135 RSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 8e-15
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 193 SKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV-----RSVN 247
+ +RV V L D A D VR+ L + + S +S+N
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLN 70
Query: 248 PVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD-PRW 306
P WNEE +F P + ++ V D R +D+ LG+ +P+ +P + + P +
Sbjct: 71 PKWNEEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 307 FNLHKPSLSAEEGAEKNKEKFSSKILISFC 336
F LH S +K + + +
Sbjct: 130 FVLHPRS---------HKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-13
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 21/141 (14%)
Query: 367 GTLELGILSAKNLMQMKSKD-GKLTDAYCVAKYGNKW------IRTRTILDTLAPRWNEQ 419
+ + +++ L KD +D Y + ++T+TI +L P+WNE+
Sbjct: 20 RIVRVRVIAGIGL---AKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 420 YTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL--- 476
+ V+ + VFD ++DD +G+V + L L T+
Sbjct: 77 ILFRVHPQQHRLLFEVFD--ENRLTRDD----FLGQVDVPLYPLPTENPRLERPYTFKDF 130
Query: 477 LLTPSGLKNN--GELHLALRF 495
+L P K+ G L L + +
Sbjct: 131 VLHPRSHKSRVKGYLRLKMTY 151
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 137 bits (345), Expect = 5e-38
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER 97
+M LCV V KA+ + + YV +K+ N K T + + P W Q F F R
Sbjct: 3 VMSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINR 58
Query: 98 LQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE 157
L L V V +K + D VG V + L + + +W L+ + E
Sbjct: 59 LDLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQA--IMADSE 112
Query: 158 I 158
I
Sbjct: 113 I 113
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-13
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASE 260
+ L V V +A+ +K + V +++ N T VR P W ++ MF +
Sbjct: 4 MSLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI--AVRGSQPSWEQDFMFEINR 58
Query: 261 PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAE 317
L V V ++ D ++G IP+R + Q +E W L ++ A+
Sbjct: 59 LDLGL-TVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEG---PGEWLTLDSQAIMAD 110
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 2e-04
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 364 GSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWD 423
G + L +G+ AK + + Y K N T + P W + + ++
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEK-----FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFE 55
Query: 424 VYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463
+ +T+ V++ K D +G V I L T+
Sbjct: 56 INRLDLGLTVEVWN-------KGLIWDTMVGTVWIPLRTI 88
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 7e-38
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 40 HYLCVNVVKARNL---PVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAF 93
H V V++A + D+ + DPYVE+ + + + T+H + NPVWN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 94 SKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
+ Q ++LE+T+ D + D+ +G + +S + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVT 113
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 9e-17
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 22/137 (16%)
Query: 369 LELGILSAKNLMQMKSKD--GKLTDAYCVAKYG---NKWIRTRTILDTLAPRWNEQYTWD 423
+ +L A + + D D Y + RTR + + P WNE + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDT-PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 424 VYDPCT-VITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSG 482
+ V+ I + D + D+ +G +S+++ +
Sbjct: 64 LDPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFI-------- 108
Query: 483 LKNNGELHLALRFTCTA 499
E+ L + +
Sbjct: 109 FNQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-13
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 202 YYLRVFVFEAQDLV---PSDKGRAPDACVRIQLG---NQLRVTRPSHVR-SVNPVWNEEH 254
+ V V A + D PD V + + + + TR H +NPVWNE
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTR--HFNNDINPVWNETF 60
Query: 255 MFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313
F+ E+++ +T+ D DE LG V ++ + F ++ +
Sbjct: 61 EFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEV-----PFIFNQVT 113
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-38
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
+ + VV A+ L D +GS DPYV V++G K TK + N NPVW + F F S
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN-SSD 77
Query: 102 LLEVTVKDKD------------IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
++V V D+D DDF+G+ +++ + + WY L+ +
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRT 130
Query: 150 GDQTTKGEIMLAV 162
G I L +
Sbjct: 131 DKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 5e-20
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 354 LQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLA 413
++ S + + ++ A+ L K K G +D Y + G RT+TI L
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQA-KDKTGS-SDPYVTVQVGKTKKRTKTIYGNLN 61
Query: 414 PRWNEQYTWDVYDPCTVITIGVFD-----NCYVNGSKDDAKDQRIGKVRIRLSTLETDRI 468
P W E + ++ ++ I + V D V D +G+ I + TL +
Sbjct: 62 PVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-- 119
Query: 469 YTHYYPLLLLTPSGLKNNGELHLAL 493
+Y L T +G + L +
Sbjct: 120 MDVWYNLDKRTDKS-AVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-17
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 190 NTRSKVYFSPKLY--YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVN 247
+ V + + + V AQ L DK + D V +Q+G + T+ + ++N
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIYGNLN 61
Query: 248 PVWNEEHMFVASEPFEDLII----------VTVEDRIRPGKDEILGRELIPVRNVPQRHE 297
PVW E F + + + V+ R + D+ LG+ +I VR +
Sbjct: 62 PVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM- 120
Query: 298 TTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLE 338
W+NL K + K S I + +E
Sbjct: 121 ------DVWYNLDKRTD---------KSAVSGAIRLHISVE 146
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-36
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQ-- 99
L V V A N+P G DP V V + K TK ++ NPVWN+I F +
Sbjct: 9 LRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 100 -SSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE 157
SS L + VKD + IG++ +G ++ L + P + L ++KG Q T
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKG-QDTGAT 124
Query: 158 IMLAV 162
I L +
Sbjct: 125 IDLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 9e-21
Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 362 RKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYT 421
GS G L + + SA N+ D + ++ +T+ + + L P WNE
Sbjct: 2 SSGSSGMLRVIVESASNI---PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILE 58
Query: 422 WDVY----DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL- 476
+D+ D + + I V D + ++ IG + L L D+ + Y L+
Sbjct: 59 FDLRGIPLDFSSSLGIIVKD--FETIGQNK----LIGTATVALKDLTGDQSRSLPYKLIS 112
Query: 477 LLTPSGLKNNGELHLALRFT 496
LL G + L + +
Sbjct: 113 LLNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-14
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR-SVNPVWNEEHMFVASEPF 262
LRV V A ++ P K PD V + ++ + T+ V +NPVWNE F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTK--KVDNELNPVWNEILEFDLRGIP 65
Query: 263 EDL---IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEG 319
D + + V+D G+++++G + ++++ + L
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLL------ 114
Query: 320 AEKNKEKFSSKILISFC 336
+ + + I +
Sbjct: 115 -NEKGQDTGATIDLVIG 130
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-35
Identities = 69/313 (22%), Positives = 116/313 (37%), Gaps = 62/313 (19%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAF--SKE 96
L V +++A +LP D +G DPYV++ L + TK K NP++N+ F F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTK 155
L L +V D D + D +G+V LD PPD PL W + + ++
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138
Query: 156 GEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLV 215
GE+ + + + P L V + +A +L
Sbjct: 139 GELNFS---------------------------------LCYLPTAGLLTVTIIKASNLK 165
Query: 216 PSDKGRAPDACVRIQLGNQLRVTR----PSHVRSVNPVWNEEHMFVASEPFEDL----II 267
D D V+ L ++ R + ++NP +NE +F E + +
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLS 223
Query: 268 VTVEDRIRPGKDEILGRELIPVRNV---PQRH-----ETTKLPDPRWFNLH--KPSLSAE 317
+ V D G +E++G + + H + P W L K S
Sbjct: 224 IAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSFT 283
Query: 318 EGAEKNKEKFSSK 330
+G + EK +S+
Sbjct: 284 KGGKGLSEKENSE 296
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 54/284 (19%), Positives = 96/284 (33%), Gaps = 61/284 (21%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWN 251
+ + L V + +A DL D D V+I L + + V +++NP++N
Sbjct: 12 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
E F S P +L + +V D R + +++G+ ++ + P W
Sbjct: 72 ET--FQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDR---PLWR 126
Query: 308 NLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIG 367
++ + + E + S C + G
Sbjct: 127 DILEGGSEKADLGE---------LNFSLCYLP-------------------------TAG 152
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIR-----TRTILDTLAPRWNEQYTW 422
L + I+ A NL M +D Y A ++ R T +TL P +NE +
Sbjct: 153 LLTVTIIKASNLKAMDL--TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 423 DVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463
DV ++I V D Y ++ IG R+
Sbjct: 211 DVAPESVENVGLSIAVVD--YDCIGHNEV----IGVCRVGPEAA 248
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 18/157 (11%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK---YGNKWIRTRTILDTLAPRWNEQYTWD 423
L + IL A +L S +D Y K +T+ TL P +NE + +
Sbjct: 20 DQLVVRILQALDLPAKDS--NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 77
Query: 424 VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRI--RLSTLETDRIYTHYYPLLLL 478
V + V+D + S+ D IG+V + L E + +L
Sbjct: 78 VPLAELAQRKLHFSVYD--FDRFSRHDL----IGQVVLDNLLELAEQPPDRPLWRDILEG 131
Query: 479 TPSGLKNNGELHLALRFTCTAWVNMVT-KYGRPLLPK 514
+ GEL+ +L + TA + VT L
Sbjct: 132 GSEK-ADLGELNFSLCYLPTAGLLTVTIIKASNLKAM 167
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 1e-34
Identities = 69/291 (23%), Positives = 111/291 (38%), Gaps = 56/291 (19%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAF--SKE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTK 155
L L + V D D K D +G + ++ V +K +Q
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF----GHVTEEWRDLQSAEKEEQEKL 136
Query: 156 GEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLV 215
G+I ++ A + L V + EA++L
Sbjct: 137 GDICFSLRYVPTAGK---------------------------------LTVVILEAKNLK 163
Query: 216 PSDKGRAPDACVRIQLGNQLRVTR----PSHVRSVNPVWNEEHMF-VASEPFEDL-IIVT 269
D G D V+I L + + ++NP +NE F V E + + ++VT
Sbjct: 164 KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 223
Query: 270 VEDRIRPGKDEILGRELIPVRNVP--QRHETTKLPDPR-----WFNLHKPS 313
V D + GK++ +G+ + + RH + L +PR W L
Sbjct: 224 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 2e-21
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 22/137 (16%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAF--S 94
L V +++A+NL MDV G DPYV++ L K T + NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRV--------PPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+V + + + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 146 EDKKGDQTTKGEIMLAV 162
+ + + + MLAV
Sbjct: 271 QVE-----EEVDAMLAV 282
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 8e-15
Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 62/279 (22%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L D G D V++ L + + V +++NPV+N
Sbjct: 11 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 70
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
E+ F P+ +L +++ V D R K +I+G +P+ V H T W
Sbjct: 71 EQ--FTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT-----EEWR 123
Query: 308 NLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIG 367
+L EK +++ I S + G
Sbjct: 124 DLQSA--------EKEEQEKLGDICFSLRYVP-------------------------TAG 150
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTW 422
L + IL AKNL +M G L+D Y K +T +TL P +NE +++
Sbjct: 151 KLTVVILEAKNLKKM--DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 423 DVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRI 458
+V + + V D Y K+DA IGKV +
Sbjct: 209 EVPFEQIQKVQVVVTVLD--YDKIGKNDA----IGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK---YGNKWIRTRTILDTLAPRWNEQYTWD 423
L +GI+ A L + G +D Y K T+ TL P +NEQ+T+
Sbjct: 19 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 76
Query: 424 VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480
V + + V+D + SK D IG+ ++ ++T++ + + L
Sbjct: 77 VPYSELAGKTLVMAVYD--FDRFSKHDI----IGEFKVPMNTVDFGHVTEEWRDLQSAEK 130
Query: 481 SGLKNNGELHLALRFTCTA 499
+ G++ +LR+ TA
Sbjct: 131 EEQEKLGDICFSLRYVPTA 149
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-33
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKE 96
++ LCV V KA+ + + YV +K+ N + T + + P W Q F F
Sbjct: 11 GILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 97 RLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKG 156
RL L V V +K + D VG V + L + + +W L+ +
Sbjct: 67 RLDLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQA--IMADS 120
Query: 157 EI 158
EI
Sbjct: 121 EI 122
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 8e-11
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 200 KLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVAS 259
L L V V +A+ +K + V +++ N T VR P W ++ MF +
Sbjct: 12 ILSLLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTI--AVRGSQPSWEQDFMFEIN 66
Query: 260 EPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAE 317
L V V ++ D ++G IP+R + Q +E W L ++ A+
Sbjct: 67 RLDLGL-TVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEG---PGEWLTLDSQAIMAD 119
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-31
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI------TKHLEKNQNPVWNQIFA 92
+ V V+ L D+ G+ DPYV V L + TK ++K+ NP WN+
Sbjct: 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66
Query: 93 FSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPD-SPLAPQWYRLEDKKG 150
F + + V D++ + +DDF+G+V + L +P P P + + L +
Sbjct: 67 FRVLPQRHR-ILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH 125
Query: 151 DQTTKGEIMLAV 162
KG + L +
Sbjct: 126 KSRVKGYLRLKM 137
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 8e-14
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV-----RSVNPVWNEEHMFV 257
+RV V L D A D VR+ L + + S +S+NP WNEE +F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 258 ASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD-PRWFNLHKPSLSA 316
P I+ V D R +D+ LG+ +P+ +P + + P + F LH S
Sbjct: 69 V-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS--- 124
Query: 317 EEGAEKNKEKFSSKILISFCL 337
+K + + +
Sbjct: 125 ------HKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-13
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 361 LRKGSIGTLELGILSAKNLMQMKSKD-GKLTDAYCVAKYGNKW------IRTRTILDTLA 413
L + + +++ L KD +D Y + ++T+TI +L
Sbjct: 2 LHNDDTRVVRVKVIAGIGLA---KKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLN 58
Query: 414 PRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHY- 472
P+WNE+ + V I VFD +D +G+V + L L T+
Sbjct: 59 PKWNEEILFRVLPQRHRILFEVFDE------NRLTRDDFLGQVDVPLYPLPTENPRMERP 112
Query: 473 --YPLLLLTPSGLKNN--GELHLALRF 495
+ +L P K+ G L L + +
Sbjct: 113 YTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-29
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITK-HLEKNQNPVWNQIFAFSKERLQS 100
L V +V A+ L D ++DPYV++ + P WN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 101 SLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIM 159
L+ + DKD +DD VG ++ L V + + P Y + + KGEI
Sbjct: 72 E-LKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVKDEEY---KGEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 363 KGSIGTLELGILSAKNLMQMKSKD--GKLTDAYCVAKYGNKWIRTRTILD-TLAPRWNEQ 419
G GTLE+ ++SAK L + D D Y + ++ P WNE
Sbjct: 6 SGPHGTLEVVLVSAKGL---EDADFLNN-MDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 420 YTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLT 479
+ + V + T + +FD G++DD +G+ I L + + + +
Sbjct: 62 FIFTVSEGTTELKAKIFD--KDVGTEDD----AVGEATIPLEPVFVEG--SIPPTAYNVV 113
Query: 480 PSGLKNNGELHLALRFT 496
+ GE+ +AL F
Sbjct: 114 KDE-EYKGEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-16
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V + A+ L +D D V++ Q + + + P WNE +F SE
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 264 DLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311
+ + D+ +D+ +G IP+ V P +N+ K
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI----PPTAYNVVK 114
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 8e-28
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 7/139 (5%)
Query: 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQN 84
+ + + L + V+ A+ PYVEV + T+ +
Sbjct: 21 DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80
Query: 85 PVWNQIFAFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWY 143
P W Q S L V + D +G +LD+ + + L
Sbjct: 81 PKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETL--KSNNMKLEEVVV 136
Query: 144 RLEDKKGDQTTK--GEIML 160
L+ + T+ G++ +
Sbjct: 137 TLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 3e-15
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 15/132 (11%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD 426
L++ ++SAK K+ Y + +T +T +P+W + T V
Sbjct: 36 SQLQITVISAKLKE--NKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV-T 92
Query: 427 PCTVITIGVFDNCYVNGSKDDA-KDQRIGKVRIRLSTL---ETDRIYTHYYPLLLLTP-S 481
P + + V+ D +G + + ++ L L
Sbjct: 93 PVSKLHFRVWS-------HQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE 145
Query: 482 GLKNNGELHLAL 493
+ G+L + L
Sbjct: 146 PTETIGDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-13
Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 12/137 (8%)
Query: 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVA 258
L++ V A+ P V + + Q + T + + +P W + +
Sbjct: 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIV 91
Query: 259 SEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEE 318
+ + V D +LG + + + + + L
Sbjct: 92 TP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK--LEEVVVTLQLGG----- 142
Query: 319 GAEKNKEKFSSKILISF 335
+K + + I
Sbjct: 143 --DKEPTETIGDLSICL 157
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 9e-27
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Query: 33 YDLVELM--HYLCVNVVKARNL---PVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQN 84
+ +VE H V V++A + D+ + DPYVE+ + + + T+H + N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 85 PVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYR 144
PVWN+ F F + Q ++LE+T+ D + D+ +G + +S + + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128
Query: 145 LEDKKGDQTTKGEIMLAVWMGTQADE 170
+ L M E
Sbjct: 129 EMVLEMSLEVCSCPDLRFSMALCDQE 154
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 3e-08
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 367 GTLELGILSAKNLMQMKSKD--GKLTDAYCVAKYG---NKWIRTRTILDTLAPRWNEQYT 421
+ +L A + + D D Y + RTR + + P WNE +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDT-PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 76
Query: 422 WDVYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474
+ + V+ I + D + D+ +G +S+++ +
Sbjct: 77 FILDPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 1e-06
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 202 YYLRVFVFEAQDL---VPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWNEEHMF 256
+ V V A + D PD V + + + + +NPVWNE F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 257 VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
+ E+++ +T+ D DE LG V ++ +
Sbjct: 78 ILDPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-26
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 23/125 (18%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL--------------GNYKGITKHLEKNQNPVW 87
L +++++ARNL D +G DP+V+V L YK TK+++K+ NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 88 NQIFAF---SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWY 143
NQ + S E+L LEVTV D D +DF+G V +DLS P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134
Query: 144 RLEDK 148
L+++
Sbjct: 135 PLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-10
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 192 RSKVYFSPKLYY----LRVFVFEAQDLVPSDKGRAPDACVRIQL-----------GNQLR 236
++ + Y L + + +A++LVP D D V++ L
Sbjct: 6 TGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 237 VTRPSHV--RSVNPVWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVR 290
R + +S+NP WN+ ++ S E L + VTV D R ++ LG LI +
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIY-KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
Query: 291 NVPQRHETTKLPDPRWFNLHKPSLS 315
+ T PRW+ L + + S
Sbjct: 123 STSHLDNT-----PRWYPLKEQTES 142
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 26/128 (20%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCV--------------AKYGNKWIRTRTILDTL 412
G L + IL A+NL+ + +D + RT+ + +L
Sbjct: 18 GNLIIHILQARNLVPRDN--NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSL 75
Query: 413 APRWNEQYTWDVYDP----CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI 468
P WN+ + + + V+D Y S +D +G+V I LS+
Sbjct: 76 NPEWNQTVIYKSISMEQLMKKTLEVTVWD--YDRFSSND----FLGEVLIDLSSTSHLDN 129
Query: 469 YTHYYPLL 476
+YPL
Sbjct: 130 TPRWYPLK 137
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 9e-25
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K TK ++ + NP WN+ F F K
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
E + L V + D D ++DF+G +S +S++ W++L ++
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 21/141 (14%)
Query: 192 RSKVYFSPKLYY----LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV-- 243
R ++Y + L V V +A++LVP D D V+++L + + +
Sbjct: 19 RGRIYIQ--AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 76
Query: 244 RSVNPVWNEEHMFVASEPFED-LIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLP 302
S+NP WNE F E +D + V + D +++ +G + + K
Sbjct: 77 CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ------KAG 130
Query: 303 DPRWFNLHKPSLSAEEGAEKN 323
WF L LS EEG N
Sbjct: 131 VDGWFKL----LSQEEGEYFN 147
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-10
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCV-----AKYGNKWIRTRTILDTLAPRWNEQYT 421
L + + AKNL+ M L+D Y +T+TI +L P WNE +
Sbjct: 31 EVLIVVVRDAKNLVPMDP--NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 422 WDVY--DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
+ + D +++ ++D + S++D +G + +S L+ + ++ LL
Sbjct: 89 FQLKESDKDRRLSVEIWD--WDLTSRND----FMGSLSFGISELQKAGV-DGWFKLL 138
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 1e-24
Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 26/142 (18%)
Query: 41 YLCVNVVKARNLPVMDVS-----------GSLDPYVEVKLGNYKGI-TKHLEKNQNPVWN 88
L + + +A +L S LDPY+ + + + + T +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 89 QIFAFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147
F + +E+ V IG DDFV ++ ++ W LE
Sbjct: 67 DEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLE- 120
Query: 148 KKGDQTTKGEIMLAVWM-GTQA 168
+G++ + + + G+
Sbjct: 121 ------PEGKVYVIIDLSGSSG 136
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-16
Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 27/145 (18%)
Query: 367 GTLELGILSAKNLMQM---------KSKDGKLTDAYCVAKYGN-KWIRTRTILDTLAPRW 416
G L++ I A +L L D Y + + +T T T +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL--ETDRIYTHYYP 474
++++ DV + I + VF + + DD + I+ L R + +
Sbjct: 66 HDEFVTDVCNG-RKIELAVFHDAPI--GYDD----FVANCTIQFEELLQNGSRHFEDWID 118
Query: 475 LLLLTPSGLKNNGELHLALRFTCTA 499
L+ G++++ + + ++
Sbjct: 119 --------LEPEGKVYVIIDLSGSS 135
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 5e-14
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 203 YLRVFVFEAQDLVPSD-----------KGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWN 251
L++ + EA L P+ + D + + + + + ++ +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 252 EEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309
+E + I + V G D+ + I + Q W +L
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF---EDWIDL 119
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 3e-24
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAF--SKE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
L L + V D D K D +G + ++ V +W L+ +
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L D G D V++ L + + V +++NPV+N
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
E F P+ +L +++ V D R K +I+G +P+ V H T W
Sbjct: 94 E--QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWR 146
Query: 308 NLH 310
+L
Sbjct: 147 DLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK---YGNKWIRTRTILDTLAPRWNEQYTWD 423
L +GI+ A L + G +D Y K T+ TL P +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 99
Query: 424 VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
V + + V+D + SK D IG+ ++ ++T++ + + L
Sbjct: 100 VPYSELGGKTLVMAVYD--FDRFSKHDI----IGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 5e-24
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAF--SKE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
L L + V D D K D +G + ++ V +W L+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L D G D V++ L + + V +++NPV+N
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
E F P+ +L +++ V D R K +I+G +P+ V H T W
Sbjct: 86 E--QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWR 138
Query: 308 NLH 310
+L
Sbjct: 139 DLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK---YGNKWIRTRTILDTLAPRWNEQYTWD 423
L +GI+ A L + G +D Y K T+ TL P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91
Query: 424 VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
V + + V+D + SK D IG+ ++ ++T++ + + L
Sbjct: 92 VPYSELGGKTLVMAVYD--FDRFSKHDI----IGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 6e-24
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 12/112 (10%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAF---SK 95
L V ++KA+ LP D SG+ DP+V++ L +K TK KN NP WN+ F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
E++ +L + V D D ++D +G VS+ L++V L + + W L+
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLK 134
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 8e-12
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWN 251
V ++ + L V + +AQ+L D D V+I L + + V +++NP WN
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
E +F P+E + + + V D R +++ +G IP+ V T W
Sbjct: 78 ETFLFEGF-PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQT-----FWK 131
Query: 308 NLHKPSLSA 316
+L S+
Sbjct: 132 DLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKY---GNKWIRTRTILDTLAPRWNEQYTWD 423
TL + I+ A+ L +D + + T+ L P WNE + ++
Sbjct: 26 STLTVKIMKAQELPAKD--FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83
Query: 424 VYDPCTVIT----IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLT 479
+ V+ + V D Y S++D IG+V I L+ ++ ++ T + L
Sbjct: 84 GFPYEKVVQRILYLQVLD--YDRFSRND----PIGEVSIPLNKVDLTQMQTFWKDLKPSG 137
Query: 480 PS 481
PS
Sbjct: 138 PS 139
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 97.0 bits (241), Expect = 1e-23
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 41 YLCVNVVKARNLPVMDVSG----------SLDPYVEVKLGNYK-GITKHLEKNQNPVWNQ 89
YL V + +A L S LDPY+ V + + G T +K P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 90 IFAFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148
F + LE+ V + +G D FV +L ++ LR S W LE
Sbjct: 90 EFCANVT--DGGHLELAVFHETPLGYDHFVANCTLQFQEL-LRTTGASDTFEGWVDLE-- 144
Query: 149 KGDQTTKGEIMLAV 162
+G++ + +
Sbjct: 145 -----PEGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 2e-16
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 22/161 (13%)
Query: 347 STHFSSDLQTSSKSLRKGS--IGTLELGILSAKNL--------MQMKSKDGKLTDAYCVA 396
H SS L G L + I A L + K +L D Y
Sbjct: 7 HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66
Query: 397 KYGNKWI-RTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGK 455
+ +T T T P +NE++ +V D + + VF + D +
Sbjct: 67 SVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLG------YDHFVAN 119
Query: 456 VRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496
++ L + + + L+ G++ + + T
Sbjct: 120 CTLQFQELLRTTGASDTFEGWVD----LEPEGKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 8e-15
Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 178 SDAHNISQKNLANTRSKVYFSPKLY--YLRVFVFEAQDLVPSD----------KGRAPDA 225
S H+ + R + + YLRV + EA L P+ + D
Sbjct: 3 SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP 62
Query: 226 CVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRE 285
+ + + + ++ P +NEE ++ + + V G D +
Sbjct: 63 YLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANC 120
Query: 286 LIPVRNVPQRHETTKLPDPRWFNLHK 311
+ + + + + + W +L
Sbjct: 121 TLQFQELLRTTGASDTFE-GWVDLEP 145
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-23
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 22/137 (16%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAF--S 94
L V +++A+NL MDV G DPYV++ L K T + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRV--------PPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+V + + + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 146 EDKKGDQTTKGEIMLAV 162
+ + + + MLAV
Sbjct: 146 QVE-----EEVDAMLAV 157
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 4e-10
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVR--SVNPVWNE 252
+ P L V + EA++L D G D V+I L + + + ++ ++NP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 253 EHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQ--RHETTKLPDPR- 305
F PFE + ++VTV D + GK++ +G+ + + RH + L +PR
Sbjct: 80 S--FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR 137
Query: 306 ----WFNLHKPS 313
W L
Sbjct: 138 PIAQWHTLQVEE 149
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 2e-23
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF- 93
H L V ++ A++LP + +PYV++ K TK ++K P WNQ F +
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 94 --SKERLQSSLLEVTVKDKD---IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148
+ + +LE+T+ D+ + +F+G + ++L L P WY+L+
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTH 134
Query: 149 K 149
Sbjct: 135 D 135
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV--RSVNPV 249
K++F + L V + A+DL + GR + V+I + R + +++ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 72
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIRPGKDEILGRELIPVRNVPQRHETTKLPD 303
WN+ ++ + + + +T+ + R+R + E LG LI + E
Sbjct: 73 WNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE------ 125
Query: 304 PRWFNLHKPSLSAEEG 319
P W+ L G
Sbjct: 126 PHWYKLQTHDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCV------AKYGNKWIRTRTILDTLAPRWNEQY 420
L + IL AK+L + DG+ + Y NK RT+T+ TL P+WN+ +
Sbjct: 21 HQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQTF 77
Query: 421 TWDVYDPCTVIT----IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
+ I ++D V + + +G++ I L T D H+Y L
Sbjct: 78 IYSPVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDDE-PHWYKLQ 132
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-23
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-----TKHLEKNQNPVWNQIFAF--S 94
L V +++ +L MD +G DP+V++ L G T+ +K NP +N+ F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP--------PDSPLAPQWYRL 145
L L+++V D D +D++G L +S R+ D + +W++L
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 157
Query: 146 EDKK 149
+++
Sbjct: 158 QNEN 161
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVT--RPSHV--RSVNPV 249
+ +S + L V + L D D V++ L + + + +++NP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 250 WNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQ--RHETTKLPD 303
+NE F DL + ++V D ++ +G + + + +H L +
Sbjct: 89 FNE--EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
Query: 304 PR-----WFNLHKPSLSAEE 318
W L + + +
Sbjct: 147 KDKKIERWHQLQNENHVSSD 166
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK----YGNKWI---RTRTILDTLAPRWNEQ 419
G L +GI+ +L M + +D + K +T+ TL P +NE+
Sbjct: 37 GGLIVGIIRCVHLAAMDAN--GYSDPFV--KLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 92
Query: 420 YTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
+ +D+ + I V+D Y G +D IG ++ +S H+Y L
Sbjct: 93 FFYDIKHSDLAKKSLDISVWD--YDIGKSNDY----IGGCQLGISAKGERL--KHWYECL 144
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 3e-23
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF--- 93
L V ++ A++LP + +PYV++ K TK ++K P WNQ F +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 94 SKERLQSSLLEVTVKDKD---IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
+ + +LE+T+ D+ + +F+G + ++L L P WY+L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD------DEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-11
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV--RSVNPV 249
K++F + L V + A+DL + GR + V+I + R + +++ P
Sbjct: 10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 69
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIRPGKDEILGRELIPVRNVPQRHETTKLPD 303
WN+ ++ + + + +T+ + R+R + E LG LI + E
Sbjct: 70 WNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE------ 122
Query: 304 PRWFNLH 310
P W+ L
Sbjct: 123 PHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-06
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCV------AKYGNKWIRTRTILDTLAPRWNEQY 420
L + IL AK+L + DG+ + Y NK RT+T+ TL P+WN+ +
Sbjct: 18 HQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQTF 74
Query: 421 TWDVYDPCT----VITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
+ ++ I ++D V + + +G++ I L T D H+Y L
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDDE-PHWYKL 128
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-23
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 17/121 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-----TKHLEKNQNPVWNQIFAF--S 94
+ VN++KARNL MD+ G+ DPYV+V L T ++N NP++N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP--------PDSPLAPQWYRL 145
E+L+ + + +TV DKD + ++D +G++ L P V P P+A QW++L
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQL 136
Query: 146 E 146
+
Sbjct: 137 K 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 191 TRSKVYFS----PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV- 243
+R ++ S P + V + +A++L D G D V++ L ++ + +
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 244 -RSVNPVWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQ--RH 296
R++NP++NE F P E L II+TV D+ + +++++G+ + ++ P +H
Sbjct: 61 KRNLNPIFNESFAF--DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKH 118
Query: 297 -----ETTKLPDPRWFNL 309
+ P +W L
Sbjct: 119 WKDMIARPRQPVAQWHQL 136
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 9e-23
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF--- 93
L +++A+ L MD +G DPYV++ L + K TK L +NPVWN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
++E +Q L ++V D+D G ++F+G L ++ + LE
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-----FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV--RSVNPV 249
+ + L+ + A+ L P D D V++ L G + + NPV
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80
Query: 250 WNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPR 305
WNE + ED+ + ++V D + G +E +G ++ +
Sbjct: 81 WNETLQYHGI-TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNF----- 134
Query: 306 WFNLHK 311
L +
Sbjct: 135 NICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCV------AKYGNKWIRTRTILDTLAPRWNEQY 420
L+ I+ AK L M S L D Y A NK RT+T+ +T P WNE
Sbjct: 29 SNLQCTIIRAKGLKPMDS--NGLADPYVKLHLLPGASKSNKL-RTKTLRNTRNPVWNETL 85
Query: 421 TWDVYDPC----TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
+ + I V D ++ IG+ R L L+ ++ L
Sbjct: 86 QYHGITEEDMQRKTLRISVCD--EDKFGHNE----FIGETRFSLKKLKANQRKNFNICL 138
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-22
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAF--S 94
L V V+KAR+LP DVSG DPYV+V L + K T + N V+N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP--------PDSPLAPQWYRL 145
E L+ +E V D + +++ +GR+ L + P +A +W+ L
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 150
Query: 146 ED 147
D
Sbjct: 151 CD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVR--SVNPVWNE 252
+ L V V +A+ L SD D V++ L + + +HV+ + N V+NE
Sbjct: 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 84
Query: 253 EHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQ--RH-----ETTKL 301
+F P E L + V D R ++E++GR ++ H + +
Sbjct: 85 LFVF--DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142
Query: 302 PDPRWFNL 309
+W L
Sbjct: 143 QIAKWHML 150
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 7e-22
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF--- 93
L + V+ ++L D + +PYV+ L K TK K +NP +N++ +
Sbjct: 22 LFIMVMHIKDLVTEDGADP-NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148
SKE L+ L+++V + + ++ F+G ++L L L +WY+L
Sbjct: 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKE-----TVKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 21/141 (14%)
Query: 185 QKNLANTRSKVYFSPKLYY----LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVT 238
+ + V S + Y L + V +DLV D P+ V+ L
Sbjct: 1 HHHHHHGSGAVKLS--VSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSK 57
Query: 239 RPSHV--RSVNPVWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNV 292
R + + ++ NP +NE ++ E L + ++V ++ LG +P+++
Sbjct: 58 RKTKISRKTRNPTFNEMLVYSGY-SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
Query: 293 PQRHETTKLPDPRWFNLHKPS 313
ET +W+ L +
Sbjct: 117 NLSKETV-----KWYQLTAAT 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 22/121 (18%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYC-------VAKYGNKWIRTRTILDTLAPRWNEQ 419
GTL + ++ K+L+ DG + Y K + +T+ T P +NE
Sbjct: 20 GTLFIMVMHIKDLVTE---DGADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFNEM 74
Query: 420 YTWDVYDPCTVIT----IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
+ Y T+ + V + ++ +G + + L + +Y L
Sbjct: 75 LVYSGYSKETLRQRELQLSVLS--AESLRENFF----LGGITLPLKDFNLSKETVKWYQL 128
Query: 476 L 476
Sbjct: 129 T 129
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 8e-22
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL------GNYKGITKHLEKNQNPVWNQIFAF-- 93
+ +++ NL + + V + T+ L+ + V+N++F
Sbjct: 45 FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSM 104
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
S L L V V D ++ +G + L++V + +WY L
Sbjct: 105 SYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCR----SGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 17/126 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL------GNQLRVTRPSHVRSVN 247
+ + K + + + +L + + +R+ + L TRP S
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRP-LDASDT 93
Query: 248 PVWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD 303
V+NE +F S + L + V V R +E LG I + V + E +
Sbjct: 94 LVFNE--VFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERS---- 147
Query: 304 PRWFNL 309
RW+NL
Sbjct: 148 TRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 18/120 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYC------VAKYGNKWIRTRTILDTLAPRWNEQY 420
+ I+ NL + + ++ RTR + + +NE +
Sbjct: 43 KQFAILIIQLSNLSALLQQQD--QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF 100
Query: 421 TWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE-TDRIYTHYYPLL 476
+ + + V ++ +G +I L+ + + T +Y LL
Sbjct: 101 WVSMSYPALHQKTLRVDVCT--TDRSHLEEC----LGGAQISLAEVCRSGERSTRWYNLL 154
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 42 LCVNVVKARNLPVMDVSGSL-DPYVEVKLGNYKGI---TKHLEKNQNPVWNQIFAF---S 94
VN+ +AR LP MD DPY+++ + K T+ L K +P +++ F F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL 130
++Q L T+ D +DD +G V + LS + L
Sbjct: 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-08
Identities = 19/126 (15%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSD-KGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVW 250
+ ++ + V + EA+ L D + D +++ + + + + V ++++P +
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 251 NEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRW 306
+E F P+ + + T+ R +D+I+G LIP+ + +
Sbjct: 74 DETFTFYGI-PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM----N 128
Query: 307 FNLHKP 312
+
Sbjct: 129 REIISG 134
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK---YGNKWIRTRTILDTLAPRWNEQYTWD 423
+ I A+ L M + +D Y ++TR + TL P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAM-DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 424 VYDPCTV----ITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467
+ + + + S+DD IG+V I LS +E
Sbjct: 81 GIPYTQIQELALHFTILS--FDRFSRDDI----IGEVLIPLSGIELSE 122
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-21
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF--S 94
L V V RNL GS DPYV + L + + T +K NPV++Q F F S
Sbjct: 26 LIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVS 84
Query: 95 KERLQSSLLEVTVKDKD-IGKDD--FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151
+Q L+V VK+ D +G+V + L+ L QWY L + G
Sbjct: 85 LPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG-----WTQWYDLTEDSGP 139
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV--RSVNPV 249
+ S + L V V ++L+ + D VR+ L + R +HV +++NPV
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPV 74
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIRPGKDEILGRELIPVRNVPQRHETTKLPD 303
+++ F S ++ + V V +LG+ L+ + + T
Sbjct: 75 FDQ--SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT---- 128
Query: 304 PRWFNLHKPSLSAE 317
+W++L + S +
Sbjct: 129 -QWYDLTEDSGPSS 141
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYC-------VAKYGNKWIRTRTILDTLAPRWNEQ 419
L + + + +NL+ +D Y + G + +T TL P +++
Sbjct: 24 NKLIVVVHACRNLIAF---SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQS 78
Query: 420 YTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
+ + V + + V + D +GKV + L++ E + +T +Y L
Sbjct: 79 FDFSVSLPEVQRRTLDVAVKN--SGGFLSKD--KGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 40 HYLCVNVVKARNLPVMDVSGSL-DPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF 93
L V+V + L D + +PYV+ L K T NP++++ +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 94 --SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148
+ L L+ +V G++ F+G + + L L K
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKK-----LDHCLPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGR-APDACVRIQL--GNQLRVTRPSHV--RSVNP 248
+ + + L V V E L +D+ + + V+ L + R + + +VNP
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74
Query: 249 VWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDP 304
+++E P L + +V R G++ LG I + + +
Sbjct: 75 LYDE--TLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKL-----D 127
Query: 305 RWFNLHKPSLSAEEG 319
LH + EG
Sbjct: 128 HCLPLHGKISAESEG 142
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 25/136 (18%)
Query: 367 GTLELGILSAKNLMQMKSKDGK---------LTDAYCVAKYGNKWIRTRTILDTLAPRWN 417
+L + + L + L D K +T DT+ P ++
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKR-----KTSIKRDTVNPLYD 77
Query: 418 EQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474
E +++ + + V+ + ++ +G+ I++ + + D+ H P
Sbjct: 78 ETLRYEIPESLLAQRTLQFSVWH--HGRFGRNTF----LGEAEIQMDSWKLDKKLDHCLP 131
Query: 475 LLLLTPSGLKNNGELH 490
L + ++ G H
Sbjct: 132 LHGKISA--ESEGHHH 145
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 4e-21
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL----GNYKGITKHLEKNQNPVWNQIFAF--SK 95
L V ++A + G D YV+ + G+ + T ++ + W + ++
Sbjct: 28 LFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
E L ++ L +T++ D + G + L L + + QW L+
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 19/131 (14%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL----GNQLRVTRPSHVRSVNPV 249
+ + + L V EA + D V+ + G+ T R ++
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTA-LKKRQLHTT 73
Query: 250 WNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPR 305
W E V E+L + +T+ R + + G + + +
Sbjct: 74 WEEG--LVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----Q 126
Query: 306 WFNLHKPSLSA 316
W L S+
Sbjct: 127 WGELKTSGPSS 137
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK----YGNKWIRTRTILDTLAPRWNEQYTW 422
L + L A D Y G+ +T L W E
Sbjct: 26 AELFVTRLEAVTS-----NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVL 80
Query: 423 DVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
+ + P +T+ + S+ G++R+ L + L
Sbjct: 81 PLAEEELPTATLTLTLRT--CDRFSRHSV----AGELRLGLDGTSVPLGAAQWGEL 130
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 3e-20
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 42 LCVNVVKARNLPVM-------DVSGSLDPYVEVKLGNYKGI---TKHLEKNQNPVWNQIF 91
L V V++AR+LP +PYV++ L + T K Q PV+ + +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 92 AF--SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148
F Q L +TV D D + +G+VS+ L +V L W L
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL-----VKGGHWWKALIPS 142
Query: 149 K 149
Sbjct: 143 G 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVP-------SDKGRAPDACVRIQLGNQLRVTRPSHV--R 244
+ +L V V EA+DL P + V+I L + ++ + V +
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 245 SVNPVWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300
+ PV+ E + PF + +++TV D + + ++G+ +P+ V
Sbjct: 78 TQKPVFEE--RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGH- 134
Query: 301 LPDPRWFNLHKPSLSA 316
W L S+
Sbjct: 135 ----WWKALIPSGPSS 146
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 367 GTLELGILSAKNLMQMKSK-----DGKLTDAYCVAKY---GNKWIRTRTILDTLAPRWNE 418
L + ++ A++L S D ++ Y +T T P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 419 QYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
+YT+++ + + V D + S+ IGKV + L ++ + + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVD--FDKFSRHCV----IGKVSVPLCEVDLVKGGHWWKAL 139
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI--TKHLEKNQNPVWNQIFAFSKERLQ 99
+ + V+ A+NL D DP+ ++ + T ++ +P WNQ + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 100 SSLLEVTVKDKD-IGKDD---FVGRVSLDLSQVP-LRVPPDSPLAPQWYRLEDKKGDQTT 154
S + ++V + I K F+G V L + + L+ L +
Sbjct: 67 S--ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRL---DLCKLNPSDTDAV 121
Query: 155 KGEIML 160
+G+I++
Sbjct: 122 RGQIVV 127
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-14
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW--IRTRTILDTLAPRWNEQYTWDVYD 426
+ L +L AKNL + +L D + T T+ +TL P+WN+ Y V
Sbjct: 7 IRLTVLCAKNLAKKDF--FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 427 PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL--ETDRIYTHYYPLLLLTPSGLK 484
+ ITI V++ + K +G VR+ + + D Y L
Sbjct: 65 TDS-ITISVWN--HKKIHKKQGAG-FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDA 120
Query: 485 NNGELHLALRF 495
G++ ++L+
Sbjct: 121 VRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-12
Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR-SVNPVWNEEHMFVASEPF 262
+R+ V A++L D R PD +I + + V+ +++P WN+ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQH--YDLYVGK 64
Query: 263 EDLIIVTVEDRIRPGKDE---ILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEG 319
D I ++V + + K + LG + + +L D + L L+ +
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAIS------RLKDTGYQRLDLCKLNPSD- 117
Query: 320 AEKNKEKFSSKILISFCL 337
+ +I++S
Sbjct: 118 ----TDAVRGQIVVSLQT 131
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-19
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L +++++ + L G+ DPYV++ L T+ + ++P +++ F F +
Sbjct: 29 LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87
Query: 96 ERLQSSLLEVTVKDKDI--GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
E L VTV ++ + +G +S + + + PD ++ WY L +
Sbjct: 88 EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL---LTPDKEIS-GWYYLLGEH 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 20/147 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHV--RSVNPV 249
++ + L + + E + L+ G D V+I L + + + +P
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQPGT-CDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77
Query: 250 WNEEHMFVASEPFEDL---IIVTVEDRIRPGK-DEILGRELIPVRNVPQRHETTKLPDPR 305
++E F ED ++VTV +R + ++G V+++ +
Sbjct: 78 FHE--HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEI----SG 131
Query: 306 WFNLHKPSLSAEEGAEKNKEKFSSKIL 332
W+ L L G K+ K + + L
Sbjct: 132 WYYL----LGEHLGRTKH-LKVARRRL 153
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYC-------VAKYGNKWIRTRTILDTLAPRWNEQ 419
L L I+ K L+ D Y ++ ++ +T+T+ D P ++E
Sbjct: 27 RVLLLHIIEGKGLISK---QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHEH 81
Query: 420 YTWDV--YDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET-DRIYTHYYPLL 476
+ + V D + + V++ + S+ + IG + + +L T D+ + +Y LL
Sbjct: 82 FFFPVQEEDDQKRLLVTVWN--RASQSR---QSGLIGCMSFGVKSLLTPDKEISGWYYLL 136
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 3e-19
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 26 GDKTASTYDLVEL---MHY----LCVNVVKARNLPVMDVSGSL-DPYVEVKLGNYKGI-- 75
G +T +T + ++ M L V V++AR+L S S PYV+V L
Sbjct: 9 GRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIA 68
Query: 76 ---TKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVK-DKD-IGKDDFVGRVSLDLSQVPL 130
T+ K +P++ Q F E Q +L+V V D + F+G + L ++ L
Sbjct: 69 KKKTRIARKTLDPLYQQSLVF-DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL 127
Query: 131 RVPPDSPLAPQWYRLEDK 148
WY+L
Sbjct: 128 SSM-----VIGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 13/138 (9%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAK--YGNKWI---RTRTILDTLAPRWNEQYT 421
G LE+ ++ A++L Q Y I +TR TL P + +
Sbjct: 30 GQLEVEVIRARSLTQKPGSKS-TPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 422 WDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPS 481
+D V+ + V+ + Y +G +I L L+ + +Y L PS
Sbjct: 89 FDESPQGKVLQVIVWGD-YGRMDHKCF----MGVAQILLEELDLSSMVIGWYK--LFPPS 141
Query: 482 GLKNNGELHLALRFTCTA 499
L + L R + ++
Sbjct: 142 SLVDPTLAPLTRRASQSS 159
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 9e-08
Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 14/132 (10%)
Query: 204 LRVFVFEAQDLVPSDKGR-APDACVRIQL--GNQLRVTRPSHV--RSVNPVWNEEHMFVA 258
L V V A+ L + P V++ L + + + ++++P++ + V
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQ--SLVF 89
Query: 259 SEPFED--LIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSA 316
E + L ++ D R +G I + + W+ L PS
Sbjct: 90 DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI-----GWYKLFPPSSLV 144
Query: 317 EEGAEKNKEKFS 328
+ + S
Sbjct: 145 DPTLAPLTRRAS 156
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 76.9 bits (188), Expect = 1e-14
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL 98
+ +L V+ +A +L + + D Y++V G + T + N NP W F L
Sbjct: 393 LAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451
Query: 99 -QSSLLEVTVKDKDIG-KDDFVGRVSLDLS 126
L V V D D G DD +G
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 5e-09
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 24/127 (18%)
Query: 373 ILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYT-WDVYD-PCTV 430
A++L TDAY +G + RT + + PRW ++ +V
Sbjct: 400 NFRAEHLW---GDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456
Query: 431 ITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELH 490
+ + V+D G DD +G + + L N+G +
Sbjct: 457 LRVQVWD--ADYGWDDD----LLGSCDRSPHSGFHE----VTCEL---------NHGRVK 497
Query: 491 LALRFTC 497
+ C
Sbjct: 498 FSYHAKC 504
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 196 YFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHM 255
L +L V F A+ L DA +++ G Q T + NP W ++
Sbjct: 388 PRQRGLAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMD 445
Query: 256 F-VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRN 291
F + V V D D++LG +
Sbjct: 446 FENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS 482
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 8e-10
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPV-WNQIFAFSKER--L 98
L V++ L G D +V ++ LE ++ +++ F +
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 99 QSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE 157
++ +LE+ + + + + +G + L +V + L D K
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV-----VEENRVEVSDTLIDDNN-AIIKTS 131
Query: 158 IMLAV 162
+ + V
Sbjct: 132 LSMEV 136
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 1e-07
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 13/123 (10%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK----GITKHLEKNQNPVWNQIFAFSK 95
+ L + +++AR LP Y E+ L + W + F F+
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 96 ERLQSSLLEVTVKDKD----IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151
+L +D D K +VG V++ ++ + R + G
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGG 125
Query: 152 QTT 154
+
Sbjct: 126 MGS 128
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 50.8 bits (120), Expect = 1e-06
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 19/193 (9%)
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYC-VAKYGNKWIRTRT---ILDTLAPRWNEQYTWD 423
L+L I+ A+ L K YC + + RT + W E + ++
Sbjct: 12 VLKLWIIEARELPPKK-------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN 64
Query: 424 VYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGL 483
+ + ++ + KD K +G V + ++TL +YP+ L T SG
Sbjct: 65 NLPAVRALRLHLYRDSDKKRKKD--KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGG 122
Query: 484 KNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFIL-----IDRLRHQAMQIVA 538
+ + K Y + +++
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCP-AVRLKARYQTMSILPMELYKEFAEYVTNHYRMLC 181
Query: 539 AGLGRAEPPLRRE 551
A L A +E
Sbjct: 182 AVLEPALNVKGKE 194
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 45.8 bits (107), Expect = 5e-05
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 16/134 (11%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSV---NPVWNEEHMFVASE 260
L++++ EA++L P + L + L S RS W E F
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 261 PFEDLIIVTVED---RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAE 317
L + D + + K +G +PV + RH T + W+ + P+ S
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ-----WYPVTLPTGSGG 122
Query: 318 EGAEKNKEKFSSKI 331
G + S
Sbjct: 123 SGGMGSGGGGGSGG 136
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L V+V++A L +G +PY E+ +G+ T+ ++ NP WN F + L
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 102 LLEVTVKDKDI-GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160
+L +T+ D+D DDF+GR + ++++ P+ + E G+ + ++ L
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQL 508
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 40/211 (18%), Positives = 81/211 (38%), Gaps = 15/211 (7%)
Query: 284 RELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHV 343
+ I + V + T D F++ + E+ + I E
Sbjct: 308 KTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQ---- 363
Query: 344 FDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI 403
+ ++ + ++S + IG L + ++ A L + +GK ++ YC G++
Sbjct: 364 YIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATEL-KACKPNGK-SNPYCEISMGSQSY 421
Query: 404 RTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462
TRTI DTL P+WN + + D V+ + +FD + D +G+ I ++
Sbjct: 422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFD------RDQFSPDDFLGRTEIPVAK 475
Query: 463 LETDRIYTHYYPLLLLTPSGLKNNGELHLAL 493
+ T++ P+ GE+ +
Sbjct: 476 IRTEQ--ESKGPMTRRLLLHEVPTGEVWVRF 504
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 69/447 (15%), Positives = 134/447 (29%), Gaps = 130/447 (29%)
Query: 285 ELIPVRNVPQRHETTKL--------PDPRWFNLH------KPSLSAEE-GAEKNKEKFSS 329
++ NV + KL P + K ++ + + K + K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 330 KIL-ISF--C---------LEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAK 377
KI ++ C L+ + D + SD +S+ LR SI EL +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSI-QAEL-----R 235
Query: 378 NLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-C-TVIT--- 432
L++ K Y N + +L + N + W+ ++ C ++T
Sbjct: 236 RLLKSK-------------PYENCLL----VLLNV---QNAK-AWNAFNLSCKILLTTRF 274
Query: 433 IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLA 492
V D +++ + + + L+ E + Y L P L
Sbjct: 275 KQVTD--FLSAAT--TTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLP-----REV 322
Query: 493 LRFTCTAWVNMVTKYGRPLLPKM--HYVQPIPFILIDRLRH----QAMQIVAAGLGRAEP 546
L P + ++ D +H + I+ + L EP
Sbjct: 323 LT-------------TNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 547 PLRREVMEYM--LDVDYH--------MWSLRKCKANFQRIVELL---SAICRWFNDICTW 593
R++ + + H +W K++ +V L S + + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKE---- 423
Query: 594 RNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGMWN----YRLRPRHPPHVDAKLSQA 649
T + ++L L E L+ ++ +N + PP++D
Sbjct: 424 ----STISIPSIYLELKVKLENEYA---LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 650 INAHLDELVKEFDTSDELDEEFDSFPT 676
I HL + E E F
Sbjct: 477 IGHHLKNI--------EHPERMTLFRM 495
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 9e-07
Identities = 92/622 (14%), Positives = 168/622 (27%), Gaps = 184/622 (29%)
Query: 251 NEEHMFVASEPF-EDLIIVTVEDRIRPGKDEIL-GRELIPVRNVPQRHETTKLPDPRWFN 308
++ + V + F ++ V+D + IL E+ + T W
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKS----ILSKEEIDHIIMSKDAVSGTLRL--FWTL 71
Query: 309 LHKPSLSA----EEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKG 364
L K EE N + S I + L ++ K
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKY 129
Query: 365 SIGTLELGILSAKN-LMQMKSKD----------GK--LTDAYC-----VAKYGNK--WI- 403
++ L+ L + L++++ GK + C K K W+
Sbjct: 130 NVSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 404 --RTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLS 461
+ L Y D N RI ++ L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQID-------------PNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 462 TLETDRIYTHYYPLLLL----TPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHY 517
L + Y + LL+L A +C ++T + + +
Sbjct: 236 RLLKSKPYEN--CLLVLLNVQNAKAWN-------AFNLSCKI---LLTTRFKQVTDFLSA 283
Query: 518 VQPIPFILIDRL----RHQAMQIVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRKCKANF 573
L + ++ L L REV N
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV----------------LTTN- 326
Query: 574 QRIVELLSAICRWFNDICTWRN-------PVETAL---LHVL--------FLTLVFYPE- 614
R + +++ R + + TW N + T + L+VL F L +P
Sbjct: 327 PRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 615 -LILPTIFLYLFLIGMW----------------NYRLRPRHPP---------HVD--AKL 646
I PTI L L W Y L + P +++ KL
Sbjct: 385 AHI-PTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 647 SQAINAH---LD--ELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMV 701
H +D + K FD+ D + D + Y +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----------FYSHI----------- 477
Query: 702 GDLASQVERAQAILCWRDLRATFIFLIFSFI-----WAVFSYVTPFEVVAVLIGL----- 751
G +E + + +R +FL F F+ ++ ++ L L
Sbjct: 478 GHHLKNIEHPERMTLFRM-----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 752 YMLRHPRFRSKMPSVPVNFFKS 773
Y+ + ++ + ++F
Sbjct: 533 YICDNDPKYERLVNAILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 71/499 (14%), Positives = 133/499 (26%), Gaps = 172/499 (34%)
Query: 74 GITKHLEKNQNPVWNQIFAFSK---------ERLQSSLLE------VTVK-DKDIGKDDF 117
+T+ + ++ ++N F+K +L+ +LLE V + GK
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 118 VGRVSLD---LSQVPLRV---------PPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165
V L ++ ++ P++ L L + T++ + + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 166 TQ----------ADESFAEA-------WHS---DAHNISQKNLANTRSKVYFSPKLYYLR 205
+ + ++ +A N+S K L TR K +L
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD----FLS 282
Query: 206 VFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTR---PSHVRSVNPVWNEEHMFVASEPF 262
L PD + L L P V + NP
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNP-------------- 327
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEK 322
+ + + IR G W N
Sbjct: 328 --RRLSIIAESIRDGLA-------------------------TWDNWKHV---------- 350
Query: 323 NKEKFSSKILISF-CLEAG-----YH---VFDESTHFSSDL------------------Q 355
N +K ++ I S LE + VF S H + L +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 356 TSSKSL-----RKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILD 410
SL ++ +I + + L + + D Y + K +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-------- 462
Query: 411 TLAPRWNEQYTWDVYDPCTVITIG-------------VFDNCYVN----GSKDDAKDQRI 453
L P + +QY + + IG +F +++ K
Sbjct: 463 DLIPPYLDQY-FYSH-------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 454 GKVRIRLSTLETDRIYTHY 472
L+TL+ + Y Y
Sbjct: 515 NASGSILNTLQQLKFYKPY 533
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 7e-05
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 40 HYLCVNVVKARNLPVMDVSGS--LDPYVEVKLG-----NYKGITKHLEKN-QNPVWNQIF 91
L V ++ + LP ++ + + +DP V V++ T + N NP W+ F
Sbjct: 497 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 556
Query: 92 AFSKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQ-------VPLRVPPDSPLAP 140
F +L+ V+D D K+DF+G+ ++ + V L
Sbjct: 557 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPS 613
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 9e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 200 KLYYLRVFVFEAQDLVPSD--KGRAPDACVRIQLG-----NQLRVTRPSHVRSVNPVWNE 252
+ LRV + Q L + K D V +++ R T NP W+
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554
Query: 253 EHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ--RH 296
E F + P L+ VED K++ +G+ IP ++ Q RH
Sbjct: 555 EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRH 600
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.98 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.82 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.81 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.81 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.79 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.79 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.78 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.77 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.76 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.75 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.75 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.75 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.75 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.74 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.74 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.74 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.74 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.74 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.74 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.73 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.73 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.73 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.72 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.72 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.72 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.72 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.72 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.71 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.71 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.71 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.71 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.71 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.71 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.71 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.71 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.7 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.7 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.7 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.7 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.69 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.67 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.62 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.61 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.61 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.59 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.57 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.57 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.57 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.56 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.55 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.55 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.5 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.46 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.45 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.44 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.39 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.27 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.16 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.16 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.14 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.13 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.11 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.05 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.02 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.0 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.94 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.91 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.88 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.87 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 88.1 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 87.96 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 83.99 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 82.78 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 80.67 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=293.93 Aligned_cols=248 Identities=27% Similarity=0.396 Sum_probs=205.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEecc--C
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~--~ 98 (782)
.|...+++.|+. ..+.|.|+|++|++|+.+|..|.+||||++++++ ++++|+++++|+||+|||+|.|.+.. .
T Consensus 5 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~ 82 (284)
T 2r83_A 5 LGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82 (284)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGC
T ss_pred eeEEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHh
Confidence 456677777775 5689999999999999999999999999999964 57899999999999999999999863 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC-cccceEEEEEEEecccCCccccccc
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD-QTTKGEIMLAVWMGTQADESFAEAW 176 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~-~~~~G~l~l~~~~~~~~d~~~~~~~ 176 (782)
....|.|+|||++.+ +|++||++.++|.++..+. ...+|++|....+. ....|+|.+++.|.+
T Consensus 83 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p---------- 147 (284)
T 2r83_A 83 AGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLRYVP---------- 147 (284)
T ss_dssp TTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEEEET----------
T ss_pred CcCEEEEEEEECCCCCCCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEEecC----------
Confidence 467999999999988 8999999999999997653 36789999876532 235799999886652
Q ss_pred cCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCCccc
Q 003975 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLG--N---QLRVTRPSHVRSVNPVWN 251 (782)
Q Consensus 177 ~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~~~~t~nP~wn 251 (782)
..+.|.|+|++|++|+..+.++.+||||++++. + .+++|+++++ +.||.||
T Consensus 148 -----------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wn 203 (284)
T 2r83_A 148 -----------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYN 203 (284)
T ss_dssp -----------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEE
T ss_pred -----------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEc
Confidence 234699999999999999999999999999994 2 4678888886 9999999
Q ss_pred ceeEEEecCCC--CCeEEEEEEEccCCCCCceeEEEEEeCCCccccc-------CCCCCCCCceEEccCC
Q 003975 252 EEHMFVASEPF--EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH-------ETTKLPDPRWFNLHKP 312 (782)
Q Consensus 252 e~f~f~v~~~~--~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~-------~~~~~~~~~w~~L~~~ 312 (782)
|.|.|.+.... ...|.|+|||++..+++++||++.++++.+.... ...+....+||.|...
T Consensus 204 e~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred eeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99999986543 4479999999999999999999999998743110 0234456799999865
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=287.22 Aligned_cols=228 Identities=25% Similarity=0.312 Sum_probs=190.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccCC
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIRP 276 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~ 276 (782)
+.|+|+|++|++|+.++.++.+||||++++++ +.++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 56999999999999999999999999999963 5788999987 99999999999998643 357999999999999
Q ss_pred CCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCc
Q 003975 277 GKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQT 356 (782)
Q Consensus 277 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 356 (782)
+++++||++.++|.++.. ......|++|..... ......|.|.+.+.+
T Consensus 98 ~~~~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~--------~~~~~~G~i~l~l~~------------------- 145 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQSAEK--------EEQEKLGDICFSLRY------------------- 145 (284)
T ss_dssp SCCCEEEEEEEEGGGCCC-----SSCEEEEEECBCCSS--------CCCCCCCEEEEEEEE-------------------
T ss_pred CCCceeEEEEEcchhccc-----CCcceeEEEeecccc--------ccccccccEEEEEEe-------------------
Confidence 999999999999999873 234678999986531 012345888887765
Q ss_pred cccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeCC---
Q 003975 357 SSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYDP--- 427 (782)
Q Consensus 357 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~~--- 427 (782)
.+..|.|.|.|++|+||+.+|.. |. ||||++++. + ...||+++++|+||+|||.|.|.+..+
T Consensus 146 ------~p~~~~l~v~v~~a~~L~~~d~~---~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 216 (284)
T 2r83_A 146 ------VPTAGKLTVVILEAKNLKKMDVG---GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 216 (284)
T ss_dssp ------ETTTTEEEEEEEEEESCCCCSTT---SCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGG
T ss_pred ------cCcCCceEEEEEEeECCCCcCCC---CCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhC
Confidence 23357999999999999988643 66 999999983 3 468999999999999999999999754
Q ss_pred CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc------------cCCceEEEEEeeee
Q 003975 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL------------ETDRIYTHYYPLLL 477 (782)
Q Consensus 428 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~ 477 (782)
...|.|+|||++.++ +|++||++.|+++.+ ..+....+||+|..
T Consensus 217 ~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 217 KVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp GEEEEEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred ceEEEEEEEeCCCCC------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 347999999999876 899999999999863 34567789999975
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=293.58 Aligned_cols=250 Identities=26% Similarity=0.337 Sum_probs=203.3
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCeEeeeccccCCCCCccccEEEEEec--cC
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~kT~~i~~t~nP~Wne~f~f~~~--~~ 98 (782)
.|...+++.|+. ..+.|.|+|++|++|+.+|..|.+||||++++ ++++++|+++++|+||+|||+|.|.+. +.
T Consensus 6 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 83 (296)
T 1dqv_A 6 CGRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83 (296)
T ss_dssp SCEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred eeEEEEEEEEeC--CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHh
Confidence 465666666665 56899999999999999999999999999999 457889999999999999999999985 33
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEE-ccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccc
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLD-LSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAW 176 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~-l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~ 176 (782)
....|.|+|||+|.+ +|++||++.++ +.++.... .....|++|....+.....|+|.+++.|.+
T Consensus 84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~----~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~---------- 149 (296)
T 1dqv_A 84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP----PDRPLWRDILEGGSEKADLGELNFSLCYLP---------- 149 (296)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSC----SSCCCCEECBCCSSCCSCCCEEEEEEEEET----------
T ss_pred cCCEEEEEEEEcCCCCCCceEEEEEeccccccccCC----ccceeeeccccccccccccceEEEEEEecc----------
Confidence 356899999999998 89999999995 55554321 125679999876544335799999987752
Q ss_pred cCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCCccc
Q 003975 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLG--N---QLRVTRPSHVRSVNPVWN 251 (782)
Q Consensus 177 ~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~~~~t~nP~wn 251 (782)
..+.|.|+|++|++|+.++.+|.+||||++++. + ++++|+++++ +.||.||
T Consensus 150 -----------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wn 205 (296)
T 1dqv_A 150 -----------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYN 205 (296)
T ss_dssp -----------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEE
T ss_pred -----------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeEC
Confidence 235699999999999999999999999999996 2 5688999886 9999999
Q ss_pred ceeEEEecCCC--CCeEEEEEEEccCCCCCceeEEEEEeCCCccccc--------CCCCCCCCceEEccCCC
Q 003975 252 EEHMFVASEPF--EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH--------ETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 252 e~f~f~v~~~~--~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~--------~~~~~~~~~w~~L~~~~ 313 (782)
|.|.|.+.... ...|.|+|||++..+++++||++.++++.+.... ...+....+|+.|....
T Consensus 206 e~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~ 277 (296)
T 1dqv_A 206 EALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEK 277 (296)
T ss_dssp ECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred ceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCcc
Confidence 99999886542 4579999999999999999999999998764200 01345678899887653
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=288.83 Aligned_cols=229 Identities=22% Similarity=0.305 Sum_probs=187.3
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccC
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQL---GNQLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIR 275 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l---~~~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~ 275 (782)
.+.|.|+|++|++|+.++.++.+||||++++ +.+.++|+++++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 3569999999999999999999999999999 567899999986 99999999999998543 24589999999999
Q ss_pred CCCCceeEEEEEe-CCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCC
Q 003975 276 PGKDEILGRELIP-VRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDL 354 (782)
Q Consensus 276 ~~~d~~iG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~ 354 (782)
.+++++||++.++ +..+.. .......|+.|..... .....|.|.+.+++
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~----~~~~~~~w~~L~~~~~---------~~~~~G~i~vsl~y----------------- 147 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAE----QPPDRPLWRDILEGGS---------EKADLGELNFSLCY----------------- 147 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGS----SCSSCCCCEECBCCSS---------CCSCCCEEEEEEEE-----------------
T ss_pred CCCCceEEEEEecccccccc----CCccceeeeccccccc---------cccccceEEEEEEe-----------------
Confidence 9999999999996 444442 2234678999976531 22346899888875
Q ss_pred CccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeCC-
Q 003975 355 QTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYDP- 427 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~~- 427 (782)
.+..|.|+|.|++|+||+++|.. |. ||||++++. + .++||+++++++||+|||.|.|.+...
T Consensus 148 --------~~~~~~l~v~v~~a~~L~~~d~~---g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 216 (296)
T 1dqv_A 148 --------LPTAGLLTVTIIKASNLKAMDLT---GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES 216 (296)
T ss_dssp --------ETTTTEEEEEEEEEESCCCCSSS---SCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred --------ccccceeEEEEEEeecCCccCCC---CCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence 23458999999999999988643 66 999999995 3 568999999999999999999998754
Q ss_pred --CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc-------------CCceEEEEEeeee
Q 003975 428 --CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE-------------TDRIYTHYYPLLL 477 (782)
Q Consensus 428 --~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-------------~~~~~~~w~~L~~ 477 (782)
...|.|+|||++.++ +|++||.+.|+++.+. .++...+|++|..
T Consensus 217 l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 217 VENVGLSIAVVDYDCIG------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp GGSCCCCCEEEECCSSS------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred ccCcEEEEEEEeCCCCC------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 348999999999876 8999999999999763 2445566777764
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=172.91 Aligned_cols=126 Identities=36% Similarity=0.507 Sum_probs=112.2
Q ss_pred eeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCC
Q 003975 32 TYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKD 111 (782)
Q Consensus 32 ~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d 111 (782)
..++.++.+.|.|+|++|++|+..|..|.+||||++++++++.+|+++++|.||+|||+|.|.+.+. ...|.|+|||++
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d 83 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED 83 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence 3456788999999999999999999999999999999999999999999999999999999999864 578999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 112 IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 112 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.. +|++||++.+++.++..+ ..+|++|.+..+.....|+|++++.|.
T Consensus 84 ~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 84 GDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp TTEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccceEEEEEEEEE
Confidence 98 899999999999999653 358999998765444689999998774
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=171.27 Aligned_cols=123 Identities=24% Similarity=0.437 Sum_probs=108.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcC
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYV 441 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~ 441 (782)
.+..|.|+|+|++|+||++++.. |. ||||+++++++.+||+++++++||+|||.|.|.+.++...|.|+|||++.+
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFS---GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSS---SCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCCCCCC---CCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 45679999999999999988643 66 999999999999999999999999999999999998888999999999987
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+ +|++||++.|+|.++..+. .+||+|......+ ...|+|+|+++|.+
T Consensus 86 ~------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 5 7999999999999998766 5899998644332 45799999998844
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=171.71 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=101.6
Q ss_pred CceeEEEEEEEEeecCCCCccCC-------CCCC-CcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKD-------GKLT-DAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~-------~~~~-dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~ 434 (782)
...|.|+|+|++|+||+++|... +.|. ||||+|.++++. .||+++++|+||+|||.|.|.+.+. ..|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEEEEE
Confidence 56799999999999999887310 1255 999999998865 7999999999999999999999764 699999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccccCC----ceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD----RIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|||++.++ +|++||++.|+|.++..+ ...+.||+|.. .|+|+|+++|
T Consensus 105 V~D~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~ 155 (157)
T 2fk9_A 105 VFHETPLG------YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITL 155 (157)
T ss_dssp EEECCSSS------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEE
T ss_pred EEECCCCC------CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEE
Confidence 99999876 899999999999999754 77899999963 5999999887
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-19 Score=167.04 Aligned_cols=125 Identities=21% Similarity=0.327 Sum_probs=104.1
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCC--
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVN-- 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~-- 442 (782)
.|.|+|+|++|+||+++|.. |. ||||++.++++.+||+++++++||.|||.|.|.+..+...|.|+|||++...
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKT---GSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTT---SCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCCC---CCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence 58999999999999988643 56 9999999999999999999999999999999999988889999999999740
Q ss_pred ---CCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 443 ---GSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 443 ---~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
.....++|++||++.|+|+++. ....+||+|...... ....|+|+|++.|+
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~-~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDK-SAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTT-CCCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCC-CCCceEEEEEEEEE
Confidence 0000028999999999999993 456899999854332 23469999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=166.61 Aligned_cols=124 Identities=23% Similarity=0.316 Sum_probs=106.1
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEEEeCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGVFDNC 439 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v~d~~ 439 (782)
..|.|.|+|++|+||+.++ . +. ||||+++++++.+||+++++++||+|||.|.|.+..+ ...|.|+|||++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~---~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTK---F-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE 80 (140)
T ss_dssp BCCEEEEEEEEEESCCCCS---S-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCCC---C-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence 4589999999999999875 2 56 9999999999999999999999999999999999753 579999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeec-CCCCCCcCcEEEEEEEEEEc
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLL-TPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~g~~~~G~i~l~~~~~~~ 498 (782)
.++ +|++||++.|+|.++..+.....||+|... ...+....|+|+|++.|.+.
T Consensus 81 ~~~------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 81 TIG------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp CSS------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCC------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 876 899999999999999988888999993322 22333456999999998653
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=168.11 Aligned_cols=122 Identities=25% Similarity=0.363 Sum_probs=107.5
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccC-CCCCCeeccEEEEEeeCCCceEEEEEEeCCcC
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLAPRWNEQYTWDVYDPCTVITIGVFDNCYV 441 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~-~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~ 441 (782)
.+.|.|+|+|++|+||+..+.. +. ||||+++++++.+||++++ ++.||+|||.|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFL---NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSS---CSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCcccC---CCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 4579999999999999988643 66 9999999999999999998 89999999999999998778999999999987
Q ss_pred CCCCCCCCCCccEEEEEEcccc-cCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTL-ETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
+ +|++||++.|+|+++ ..+.....||+|.. +.+..|+|+|++.|.+.
T Consensus 84 ~------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~----~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred C------CCceEEEEEEEHHHhccCCCCCcEEEEeec----CCccCEEEEEEEEEEeC
Confidence 6 899999999999999 55666789999982 23456999999999764
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=166.44 Aligned_cols=123 Identities=29% Similarity=0.402 Sum_probs=108.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC---CCCeEEEEEEeCCCC-
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL---QSSLLEVTVKDKDIG- 113 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~~- 113 (782)
..+.|.|+|++|++|+..|. |.+||||++++++++++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 45799999999999999998 9999999999999999999999999999999999998643 468899999999998
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEE---eccCCCCcccceEEEEEEEeccc
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYR---LEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~---L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+|++||++.++|.++..+. ....|++ |.+..+.. ..|+|.+++.|.+.
T Consensus 84 ~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~-~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQD-TGATIDLVIGYDPP 134 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCE-EEEEEEEEEEECCC
T ss_pred CCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCC-CCCEEEEEEEEECC
Confidence 8999999999999997653 2568988 77665543 57999999999864
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=167.69 Aligned_cols=129 Identities=28% Similarity=0.367 Sum_probs=103.4
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
.+..+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 456789999999999999999899999999999974 578999999999999999999999763 5789999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCC-CCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 110 KDIG-KDDFVGRVSLDLSQVPLRVPPD-SPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~v~l~~l~~~~~~~-~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
++.. +|++||++.++|.++....... .....+||+|....+.....|+|.+++.|.
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 9998 8999999999999998754321 233469999987654334689999999885
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-19 Score=165.11 Aligned_cols=120 Identities=32% Similarity=0.525 Sum_probs=106.2
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC-----
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI----- 112 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~----- 112 (782)
..+.|.|+|++|++|+..|..|.+||||++++++++++|+++++|.||+|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 3689999999999999999999999999999999999999999999999999999999764 4789999999997
Q ss_pred -------CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 113 -------GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 113 -------~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.+|++||++.++|.++.. ...+||+|....+.....|+|.+++.|.
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l~~-------~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTLSG-------EMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGCCS-------EEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccCCCCccEEEEEEEHHHCcC-------CCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 389999999999999932 2569999997655444689999999874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=169.48 Aligned_cols=130 Identities=26% Similarity=0.375 Sum_probs=103.9
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeC
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDK 110 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~ 110 (782)
...|.|.|+|++|++|+..+..|.+||||+|++++ .+++|++++++.||+|||+|.|.+... ...|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence 45789999999999999999999999999999975 578999999999999999999999753 57899999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCC-CCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 111 DIG-KDDFVGRVSLDLSQVPLRVPP-DSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 111 d~~-~d~~lG~~~v~l~~l~~~~~~-~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+.+ +|++||++.++|.++...... +.....+||+|....+.....|+|.+++.|.+.
T Consensus 84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 998 999999999999999875432 122344899999865544468999999999875
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=167.50 Aligned_cols=124 Identities=20% Similarity=0.320 Sum_probs=100.7
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC------EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGV 435 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v 435 (782)
.+..|.|+|+|++|+||+.++.. |. ||||++++++ +.+||+++++++||+|||.|.|.+......|.|+|
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDIL---GASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp CTTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCC---CCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 34568999999999999987643 56 9999999963 57999999999999999999999988778999999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCce------EEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI------YTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
||++.++ +|++||++.|+|.++..+.. ..+||+|.....+ .+..|+|+|++.|.
T Consensus 93 ~d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 93 FDENRLT------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK-SRVKGYLRLKMTYL 152 (153)
T ss_dssp EECCSSS------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTT-CCCCSEEEEEEEEC
T ss_pred EECCCCc------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCC-CCcceEEEEEEEEe
Confidence 9999876 89999999999999976543 2589999864432 24569999999874
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=167.27 Aligned_cols=121 Identities=23% Similarity=0.360 Sum_probs=102.1
Q ss_pred cccceeEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeE
Q 003975 35 LVELMHYLCVNVVKARNLPVMDV----------SGSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLL 103 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~----------~g~~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L 103 (782)
.+...|.|.|+|++|++|+++|. .|.+||||++++++++ .+|+++++|+||+|||+|.|.+.+ ...|
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L 101 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL 101 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence 34567999999999999998873 3679999999999865 799999999999999999999975 4689
Q ss_pred EEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 104 EVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 104 ~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.|+|||+|.+ +|++||++.|++.++..+.+ +....+.||+|+. .|+|++.+.+.
T Consensus 102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~-~~~~~~~W~~L~~-------~G~i~l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETPLGYDHFVANCTLQFQELLRTTG-ASDTFEGWVDLEP-------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHHHHHT-TCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred EEEEEECCCCCCCCEEEEEEEEHHHhhcccC-CCCcccEEEECCC-------CcEEEEEEEEE
Confidence 9999999988 89999999999999975410 1124679999974 58999988763
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=165.20 Aligned_cols=125 Identities=28% Similarity=0.437 Sum_probs=109.1
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeecccc-CCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLE-KNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~- 113 (782)
..+.+.|.|+|++|++|+..|..|.+||||++++++++.+|++++ ++.||+|||+|.|.+.+ ....|.|+|||++..
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT 84 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence 447799999999999999999899999999999999999999998 89999999999999987 578999999999988
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
+|++||++.++|.++.... ....+||+|. ..+. ..|+|.+++.|.+..
T Consensus 85 ~d~~lG~~~i~l~~l~~~~----~~~~~w~~L~-~~~~--~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFVEG----SIPPTAYNVV-KDEE--YKGEIWVALSFKPSG 132 (136)
T ss_dssp TTCCSEEEEEESHHHHHHS----EEEEEEEEEE-ETTE--EEEEEEEEEEEEECC
T ss_pred CCceEEEEEEEHHHhccCC----CCCcEEEEee-cCCc--cCEEEEEEEEEEeCC
Confidence 8999999999999995421 1356899998 3333 589999999998653
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=160.80 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=101.0
Q ss_pred eeEEEEEEEEeecCCCCccCCC--------CC-CCcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDG--------KL-TDAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~--------~~-~dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v 435 (782)
.|.|+|+|++|+||+++|.... .+ +||||++++++.. .+|+++++|+||+|||.|.|.+.++ ..|.|+|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V 83 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence 5899999999999998774211 12 4999999998865 7999999999999999999999876 8999999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCC--ceEEEEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETD--RIYTHYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
||++.++ +|++||++.|+|+++..+ ...+.|++|.. .|+|+|+++|...
T Consensus 84 ~d~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEE
T ss_pred EeCCCCC------CCCEEEEEEEEHHHhcccCCCCccEEEEcCC--------CeEEEEEEEEEec
Confidence 9999876 899999999999999864 45689999863 5999999998653
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=167.66 Aligned_cols=125 Identities=21% Similarity=0.334 Sum_probs=98.9
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC------EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~ 436 (782)
...|.|+|+|++|+||+.++.. |. ||||++++++ +.+||+++++++||.|||.|.|.+......|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~---g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDIL---GASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CC---CCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCC---CCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence 4568999999999999988643 66 9999999975 679999999999999999999999977789999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceE-E-----EEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIY-T-----HYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
|++.++ +|++||++.|+|.++..+... . .||+|.....++ +..|+|+|++.|.+.
T Consensus 82 d~d~~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENRLT------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC----------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred ECCCCC------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 999876 899999999999999876443 2 799998654433 346999999998543
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=157.83 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=96.5
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC---EEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCc
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCY 440 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~ 440 (782)
.|.|.|+|++|+||++++..+..|. ||||++++++ +.+||+++++++||+|||.|.|.+..+ ...|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 4799999999999998521122356 9999999985 789999999999999999999999643 6799999999986
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALR 494 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+ +|++||++.|+|+++..+.....|++|.. ...|.|+++++
T Consensus 82 ~-------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le 122 (126)
T 1rlw_A 82 V-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLE 122 (126)
T ss_dssp S-------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEE
T ss_pred C-------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEE
Confidence 4 58899999999999999999999999963 22356666544
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=166.45 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=105.2
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~ 116 (782)
..+.|.|+|++|++|+..+..+.+||||+|++++++++|+++++|+||+|||+|.|.+.. ...|.|+|||++.+ +|+
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~dd 111 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDV 111 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCCc
Confidence 467899999999999944444559999999999999999999999999999999999864 78899999999998 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+||++.++|.++.............|++|....+.....|+|.+++.+...
T Consensus 112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 999999999999754322111236799999875433468999999987643
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=158.09 Aligned_cols=115 Identities=24% Similarity=0.401 Sum_probs=99.4
Q ss_pred eeEEEEEEEEeeCCCCC---CCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVM---DVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~ 112 (782)
.+.|.|+|++|++|+.+ |..|.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999999984 5678999999999986 68899999999999999999999976567899999999998
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEE
Q 003975 113 GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVW 163 (782)
Q Consensus 113 ~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~ 163 (782)
.+|++||++.++|.++..+. ....|++|.+. ..|+|.+++.
T Consensus 82 ~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~-----~~g~i~~~le 122 (126)
T 1rlw_A 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV-----TEMVLEMSLE 122 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT-----EEEEEEEEEE
T ss_pred CCCceeEEEEEEHHHccCCC-----cEEEEEEcCCC-----ceEEEEEEEE
Confidence 88999999999999997643 36789999862 2577777764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=158.16 Aligned_cols=116 Identities=23% Similarity=0.382 Sum_probs=98.9
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEeeeccccCCCCCccccEEEEE-ec--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~kT~~i~~t~nP~Wne~f~f~-~~-- 96 (782)
|+..+.+.|++ ..+.|.|+|++|++|+. +..|.+||||++++ +..+++|+++++|.||+|||+|.|. +.
T Consensus 7 ~~~~~~~~~~~--~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~ 83 (134)
T 2b3r_A 7 GSGAVKLSVSY--RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83 (134)
T ss_dssp CCCEEEEEEEE--ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHH
T ss_pred ccEEEEEEEee--cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHH
Confidence 45566777777 56899999999999997 77899999999999 3467899999999999999999999 65
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
++....|.|+|||++.. ++++||++.++|.++..+. ...+||+|.+.
T Consensus 84 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~ 131 (134)
T 2b3r_A 84 TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTAA 131 (134)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC-
T ss_pred HhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC-----CcceeEECCCc
Confidence 33567999999999998 8999999999999997643 36799999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=159.91 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=100.2
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCC-----------CCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeEEE
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGS-----------LDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEV 105 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~-----------~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i 105 (782)
..|.|.|+|++|++|++.|..+. +||||++.++++. .+|+++.+|.||+|||+|.|.+.+. ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence 35899999999999998875443 9999999998864 7999999999999999999999764 78999
Q ss_pred EEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 106 TVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 106 ~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+|||+|.. +|++||++.+++.++..+.. .....|++|+. .|+|++.+.|.+
T Consensus 82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~w~~L~~-------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 82 AVFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEEeCCCCCCCCEEEEEEEEHHHhcccCC---CCccEEEEcCC-------CeEEEEEEEEEe
Confidence 99999988 89999999999999987532 12478999864 689999998864
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=156.60 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=102.4
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CE
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NK 401 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~ 401 (782)
...|+|.+++.+. +..+.|+|+|++|+||+.++.. +. ||||++++. .+
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 10 ENLGRIQFSVGYN-------------------------FQESTLTVKIMKAQELPAKDFS---GTSDPFVKIYLLPDKKH 61 (141)
T ss_dssp CCCCEEEEEEEEC-------------------------SSSCCEEEEEEEEESCCCCSSS---SCCCEEEEEEEESCCSS
T ss_pred ceeeEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCCCCC---CCCCcEEEEEEECCCCc
Confidence 3469999998862 3357999999999999988643 66 999999993 46
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
.+||++++++.||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+.....||+|..
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS------RNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSS------SCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCC------CCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 8999999999999999999998643 2578999999999876 89999999999999998888899999986
Q ss_pred c
Q 003975 478 L 478 (782)
Q Consensus 478 ~ 478 (782)
.
T Consensus 136 ~ 136 (141)
T 2d8k_A 136 S 136 (141)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=159.52 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=102.2
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---CCE
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---GNK 401 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~ 401 (782)
...|+|.+++.+. +..+.|+|+|++|+||+.++.. +. ||||++++ +.+
T Consensus 26 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 26 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPALDMG---GTSDPYVKVFLLPDKKK 77 (152)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCSTT---SCCCEEEEEEEETTCCS
T ss_pred CCceEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCccCC---CCcCeEEEEEEEcCCCc
Confidence 3468999998763 3347999999999999988643 66 99999999 456
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
.+||+++++++||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|+++..+....+||+|..
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 7999999999999999999998864 2579999999999876 89999999999999998888999999974
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=154.44 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=100.7
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C-
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN--YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K- 114 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~- 114 (782)
...|.|+|++|++|+..|..|.+||||++++++ ++++|+++++|+||+|||+|.|.+... ..|.|+|||++.. +
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 467999999999999999999999999999975 789999999999999999999999764 3499999999987 4
Q ss_pred --CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC--cccceEEEEEEEe
Q 003975 115 --DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD--QTTKGEIMLAVWM 164 (782)
Q Consensus 115 --d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~--~~~~G~l~l~~~~ 164 (782)
|++||++.+++.++..... ...+|++|....+. ....|+|.+++..
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKD----TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTT----SCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccc----cCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999999998843221 14589999876432 2368999998854
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-18 Score=155.91 Aligned_cols=115 Identities=29% Similarity=0.550 Sum_probs=95.2
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEeeeccccCCCCCccccEEEEEec--
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~kT~~i~~t~nP~Wne~f~f~~~-- 96 (782)
.|...++..|+. ..+.|.|+|++|++|+..|..|.+||||++++ +..+++|+++++|.||+|||+|.|.+.
T Consensus 4 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 81 (129)
T 2bwq_A 4 SGQLSIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81 (129)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred eEEEEEEEEEcc--CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCH
Confidence 455667777665 56899999999999999999999999999999 346899999999999999999999952
Q ss_pred -cCCCCeEEEEEEeCCCC-C--CceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 97 -RLQSSLLEVTVKDKDIG-K--DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 -~~~~~~L~i~V~d~d~~-~--d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|+|||++.. + +++||++.++|.++.... .++||+|+
T Consensus 82 ~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq 129 (129)
T 2bwq_A 82 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 129 (129)
T ss_dssp GGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred HHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence 33467899999999988 5 999999999999997642 67999985
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=157.72 Aligned_cols=118 Identities=23% Similarity=0.291 Sum_probs=102.8
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---CCE
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---GNK 401 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~ 401 (782)
...|+|.+++++. +..+.|.|+|++|+||+.++.. +. ||||++++ +.+
T Consensus 18 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 18 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPALDMG---GTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCBGGG---BCCCEEEEEEEESCCSC
T ss_pred cCeEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCCC---CCcCcEEEEEEECCCCc
Confidence 4569999998863 3457999999999999988643 56 99999999 456
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
.+||+++++|.||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+....+||+|..
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC------CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 89999999999999999999998643 479999999999876 89999999999999999988999999974
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=161.64 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=102.7
Q ss_pred ccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC----
Q 003975 325 EKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---- 399 (782)
Q Consensus 325 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---- 399 (782)
....|+|.+++++. +..|.|.|.|++|+||+.++. ..+. ||||+++++
T Consensus 6 ~~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d~--~~~~~dpyv~v~l~~~~~ 58 (148)
T 3fdw_A 6 IFVTGRIAFSLKYE-------------------------QQTQSLVVHVKECHQLAYADE--AKKRSNPYVKTYLLPDKS 58 (148)
T ss_dssp CCCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCSBT--TTTBCCEEEEEEEETCCS
T ss_pred CccceEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCccc--CCCCCCeEEEEEEEcCCc
Confidence 34569999999873 345799999999999998762 2355 999999995
Q ss_pred -CEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 400 -NKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 400 -~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
...+||+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+....+||+|
T Consensus 59 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L 132 (148)
T 3fdw_A 59 RQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG------RNTFLGEAEIQMDSWKLDKKLDHCLPL 132 (148)
T ss_dssp GGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG------CEEEEEEEEEEHHHHHHHCCSEEEEEC
T ss_pred ccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc------CCcEEEEEEEEcccccccCCccceEEC
Confidence 3479999999999999999999998753 347999999999876 899999999999999877777899999
Q ss_pred eecCC
Q 003975 476 LLLTP 480 (782)
Q Consensus 476 ~~~~~ 480 (782)
.....
T Consensus 133 ~~~~~ 137 (148)
T 3fdw_A 133 HGKIS 137 (148)
T ss_dssp BCC--
T ss_pred cCccc
Confidence 86443
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-18 Score=161.16 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=99.3
Q ss_pred ccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----
Q 003975 327 FSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN----- 400 (782)
Q Consensus 327 ~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~----- 400 (782)
..|+|++++.+. +..+.|+|.|++|+||+++|. .|. ||||++++.+
T Consensus 28 ~~G~l~~sl~y~-------------------------~~~~~L~V~Vi~a~~L~~~d~---~g~sDPyVkv~l~~~~~~~ 79 (155)
T 2z0u_A 28 GATRIQIALKYD-------------------------EKNKQFAILIIQLSNLSALLQ---QQDQKVNIRVAVLPCSEST 79 (155)
T ss_dssp CCEEEEEEEEEE-------------------------TTTTEEEEEEEEEECGGGTCC---SCCSEEEEEEEEESCSCHH
T ss_pred CcEEEEEEEEEc-------------------------CCCCEEEEEEEEccCcCCccc---CCCCCEEEEEEEecCCCCC
Confidence 458898888763 335799999999999999864 366 9999999954
Q ss_pred -EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc-CCceEEEEEee
Q 003975 401 -KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE-TDRIYTHYYPL 475 (782)
Q Consensus 401 -~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L 475 (782)
.++||+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||.+.|+|+++. .+....+||+|
T Consensus 80 ~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~------~~d~iG~~~i~l~~l~~~~~~~~~W~~L 153 (155)
T 2z0u_A 80 TCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSH------LEECLGGAQISLAEVCRSGERSTRWYNL 153 (155)
T ss_dssp HHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTS------CEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred ccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCC------CCcEEEEEEEEHHHccCCCCccccceEc
Confidence 279999999999999999999998642 468999999999876 8999999999999996 46778999998
Q ss_pred e
Q 003975 476 L 476 (782)
Q Consensus 476 ~ 476 (782)
.
T Consensus 154 ~ 154 (155)
T 2z0u_A 154 L 154 (155)
T ss_dssp B
T ss_pred c
Confidence 5
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-18 Score=154.05 Aligned_cols=115 Identities=24% Similarity=0.419 Sum_probs=93.9
Q ss_pred ccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CC
Q 003975 327 FSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GN 400 (782)
Q Consensus 327 ~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~ 400 (782)
..|+|.+++.+. +..|.|.|+|++|+||++++.. |. ||||++++ +.
T Consensus 3 ~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---~~~dpyv~v~~~~~~~~~ 54 (129)
T 2bwq_A 3 LSGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSREDG---RPRNPYVKIYFLPDRSDK 54 (129)
T ss_dssp CCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCTTS---CCBCEEEEEEEESSCSGG
T ss_pred eeEEEEEEEEEc-------------------------cCCCEEEEEEEEeeCCCCCCCC---CCCCCEEEEEEecCCCCC
Confidence 358999998863 3347999999999999988643 66 99999999 45
Q ss_pred EEEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCC--CCccEEEEEEcccccCCceEEEEEe
Q 003975 401 KWIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAK--DQRIGKVRIRLSTLETDRIYTHYYP 474 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~ 474 (782)
...||+++++|.||+|||.|.|.+.. ....|.|+|||++.++ + |++||++.|+|.++.... ..+||+
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~------~~~~~~lG~~~i~l~~l~~~~-~~~W~~ 127 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR------EEESEFLGEILIELETALLDD-EPHWYK 127 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------------CEEEEEEEEEGGGCCCSS-CEEEEE
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCc------CcCCceeEEEEEEccccCCCc-CCccEE
Confidence 78999999999999999999999643 2469999999999875 5 999999999999987655 789999
Q ss_pred ee
Q 003975 475 LL 476 (782)
Q Consensus 475 L~ 476 (782)
|.
T Consensus 128 Lq 129 (129)
T 2bwq_A 128 LQ 129 (129)
T ss_dssp CC
T ss_pred Cc
Confidence 84
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=156.40 Aligned_cols=120 Identities=33% Similarity=0.451 Sum_probs=101.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEec---c
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKE---R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~---~ 97 (782)
.|...+++.|. +..+.|.|+|++|++|+..|..|.+||||++++. .++++|+++++|.||+|||+|.|.+. +
T Consensus 12 ~G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 89 (141)
T 2d8k_A 12 LGRIQFSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 89 (141)
T ss_dssp CCEEEEEEEEC--SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHH
T ss_pred eeEEEEEEEEe--CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHH
Confidence 35455666655 4678999999999999999999999999999994 36789999999999999999999852 2
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g 150 (782)
.....|.|+|||++.. +|++||++.++|.++..+. ...+||+|.....
T Consensus 90 ~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPSGP 138 (141)
T ss_dssp HTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEECCC
T ss_pred cccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCCCC
Confidence 3467899999999998 8999999999999997653 3678999998653
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=152.95 Aligned_cols=122 Identities=24% Similarity=0.296 Sum_probs=97.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC--EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
..|+|+|++|+||+++|.. |. ||||++++++ +.++|+++++|+||+|||.|.|.+.++. .|.|+|||++.++.
T Consensus 5 ~~L~V~v~~a~~L~~~d~~---g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFF---RLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEESCCCCSTT---CCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTS
T ss_pred EEEEEEEEEeECCCCCCCC---CCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCC
Confidence 5899999999999988653 66 9999999964 7899999999999999999999998764 59999999998750
Q ss_pred CCCCCCCCccEEEEEEcccc-cCCceEEEEEeeeecCCC-CCCcCcEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTL-ETDRIYTHYYPLLLLTPS-GLKNNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~-g~~~~G~i~l~~~~ 495 (782)
...|++||.+.|++..+ ........|++|....+. ..+..|+|++++..
T Consensus 81 ---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 ---KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp ---STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred ---CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 11289999999999998 222223588999875432 23447999998753
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=157.87 Aligned_cols=118 Identities=31% Similarity=0.457 Sum_probs=100.9
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEecc--C
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~~--~ 98 (782)
.|...+++.|+. ..+.|.|+|++|++|+..|..|.+||||++++. .++++|+++++|.||+|||+|.|.+.. .
T Consensus 28 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 105 (152)
T 1rsy_A 28 LGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105 (152)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeC--CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHc
Confidence 355566666654 668999999999999999999999999999994 467899999999999999999998853 2
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
....|.|+|||++.. +|++||++.++|.++..+. ...+||+|.+.
T Consensus 106 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~ 151 (152)
T 1rsy_A 106 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA 151 (152)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence 468899999999998 8999999999999997643 36799999864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=160.82 Aligned_cols=117 Identities=37% Similarity=0.533 Sum_probs=100.7
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe--------------EeeeccccCCCCCcccc
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY--------------KGITKHLEKNQNPVWNQ 89 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~--------------~~kT~~i~~t~nP~Wne 89 (782)
.|...+++.|+ .+.|.|+|++|++|+..|..|.+||||++++++. +++|+++++|.||+|||
T Consensus 6 ~G~i~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T 1rh8_A 6 TGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred ceEEEEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence 35667788877 5799999999999999999999999999999863 47999999999999999
Q ss_pred EEEEE-ec--cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 90 IFAFS-KE--RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 90 ~f~f~-~~--~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+|.|. +. ++....|.|+|||++.. ++++||++.++|.++.... ...+||+|.+..
T Consensus 82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T 1rh8_A 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC-----CCCeEEECCccC
Confidence 99997 53 33467899999999998 8999999999999987543 267999998864
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=157.72 Aligned_cols=120 Identities=28% Similarity=0.535 Sum_probs=101.7
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEeeeccccCCCCCccccEEEEEe-c-
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFSK-E- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~kT~~i~~t~nP~Wne~f~f~~-~- 96 (782)
.|...++..|+. ..+.|.|+|++|++|+.+|..|.+||||++++ +.++++|+++++|.||+|||+|.|.+ .
T Consensus 7 ~G~i~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~ 84 (141)
T 1v27_A 7 GGQLSIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84 (141)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred ccEEEEEEEEeC--CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence 466667777664 56899999999999999999999999999999 34688999999999999999999994 3
Q ss_pred -cCCCCeEEEEEEeCCCC-C--CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 97 -RLQSSLLEVTVKDKDIG-K--DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 97 -~~~~~~L~i~V~d~d~~-~--d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
+.....|.|+|||++.. + +++||++.++|.++.... ..+||+|.+.+..
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~g 137 (141)
T 1v27_A 85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDSG 137 (141)
T ss_dssp TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSSC
T ss_pred HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC------CCceEECcccccC
Confidence 33458999999999998 5 999999999999987531 6799999986543
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=161.21 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=99.3
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEecc
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~~ 97 (782)
.|...+++.|+. ..+.|.|+|++|++|+++|..|.+||||++++.+ .++||+++++|+||+|||+|.|.+..
T Consensus 29 ~G~l~~sl~y~~--~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~ 106 (155)
T 2z0u_A 29 ATRIQIALKYDE--KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106 (155)
T ss_dssp CEEEEEEEEEET--TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred cEEEEEEEEEcC--CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence 345566766665 5689999999999999999999999999999965 27899999999999999999999863
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 --LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 --~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||+|.. ++++||++.++|.++... .....+||+|.
T Consensus 107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~----~~~~~~W~~L~ 154 (155)
T 2z0u_A 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS----GERSTRWYNLL 154 (155)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTT----CCCEEEEEEEB
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCC----CCccccceEcc
Confidence 2357899999999998 999999999999999632 12367999986
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-18 Score=156.93 Aligned_cols=116 Identities=32% Similarity=0.471 Sum_probs=99.2
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCeEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
|...++..|+ ...+.|.|+|++|++|+..|..|.+||||++++ +.++++|+++++|.||+|||+|.|.+. +..
T Consensus 21 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 98 (143)
T 3f04_A 21 GKLQYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 98 (143)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHT
T ss_pred EEEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcC
Confidence 3444555554 577899999999999999998899999999999 446899999999999999999999986 334
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
...|.|+|||++.. +|++||++.++|.++..+. ...+|++|+.
T Consensus 99 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~ 142 (143)
T 3f04_A 99 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence 58899999999998 9999999999999997653 3679999975
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=156.18 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=100.4
Q ss_pred ccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC----
Q 003975 325 EKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN---- 400 (782)
Q Consensus 325 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~---- 400 (782)
....|+|.+++.+. +..+.|.|.|++|+||++++.. |.||||++++.+
T Consensus 7 ~~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 7 GSPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAFSED---GSDPYVRMYLLPDKRR 58 (142)
T ss_dssp SCSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSSTT---CCCEEEEEEEESCCCS
T ss_pred CCCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCCCCC---CCCeeEEEEEEcCCCC
Confidence 34569999998863 3347999999999999998753 289999999932
Q ss_pred -EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 401 -KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 401 -~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
..+||+++++|+||+|||.|.|.+... ...|.|+|||++.++. ..|++||++.|+|.++..+....+||+|.
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~----~~~~~iG~~~i~l~~~~~~~~~~~W~~L~ 134 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLS----KDKGLLGKVLVALASEELAKGWTQWYDLT 134 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSC----CSCCCCEEEEEECCCSTTTTCBCCBCCCB
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccc----cCCcEEEEEEEecccccccccccceeecc
Confidence 579999999999999999999998642 3599999999997640 12579999999999998877889999998
Q ss_pred e
Q 003975 477 L 477 (782)
Q Consensus 477 ~ 477 (782)
.
T Consensus 135 ~ 135 (142)
T 2dmg_A 135 E 135 (142)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=154.50 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=99.7
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----C
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----G 399 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~ 399 (782)
...|+|.+++.+. +..+.|.|.|++|+||+.++.. +. ||||++++ +
T Consensus 5 ~~~G~i~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~ 56 (141)
T 1v27_A 5 SSGGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSREDG---RPRNPYVKIYFLPDRSD 56 (141)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCSSS---CCCCEEEECCCSSCCSS
T ss_pred CcccEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCcCCC---CCCCCEEEEEEecCCCC
Confidence 4569999999863 3347999999999999988643 66 99999999 4
Q ss_pred CEEEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 400 NKWIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 400 ~~~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
.+.+||+++++|+||+|||.|.|.+.. ....|.|+|||++.++ ...|++||++.|+|.++.... ..+||+|
T Consensus 57 ~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~----~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 131 (141)
T 1v27_A 57 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR----EEESEFLGEILIELETALLDD-EPHWYKL 131 (141)
T ss_dssp SSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS----SCCBCCCEEEEEEGGGCCCSS-EEEEEEC
T ss_pred CcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc----CCCCceEEEEEEEccccCCCC-CCceEEC
Confidence 578999999999999999999999542 2469999999999875 012899999999999987655 7899999
Q ss_pred eec
Q 003975 476 LLL 478 (782)
Q Consensus 476 ~~~ 478 (782)
...
T Consensus 132 ~~~ 134 (141)
T 1v27_A 132 QTH 134 (141)
T ss_dssp BCC
T ss_pred ccc
Confidence 863
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=157.51 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=100.6
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
..+.|+|+|++|++|+..+.. .+.||||+|+++++.+||+++++|+||+|||.|.|.+. +...|.|+|||++.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~--~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~-- 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNW--FGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK-- 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--C--CCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS--
T ss_pred CceEEEEEEEEeECCCCcccC--CCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC--
Confidence 457999999999999944322 22599999999999999999999999999999999985 5789999999999876
Q ss_pred CCCCCCCccEEEEEEcccccCC-----ceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLETD-----RIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.|+|.++..+ .....|++|.... .+.+..|+|.+.+.+..
T Consensus 109 ----~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 109 ----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-EPTETIGDLSICLDGLQ 161 (173)
T ss_dssp ----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-CTTSEEEEEEEEEESEE
T ss_pred ----CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-CCCcccEEEEEEEeeee
Confidence 899999999999998542 1236799998753 23345799999987643
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=156.29 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=98.3
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----C
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----G 399 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~ 399 (782)
...|++.+++++. +..|.|.|+|++|+||+.++ . |. ||||++.+ .
T Consensus 11 ~~~G~~~lsL~y~-------------------------~~~~~L~V~v~~a~~L~~~d-~---g~~Dpyv~v~l~~~~~~ 61 (153)
T 3fbk_A 11 KVQGAGQLRLSID-------------------------AQDRVLLLHIIEGKGLISKQ-P---GTCDPYVKISLIPEDSR 61 (153)
T ss_dssp --CCCCEEEEEEE-------------------------ESSSEEEEEEEEEESCCCCS-S---SCCCEEEEEEEESCSCC
T ss_pred CCCCEEEEEEEEE-------------------------CCCCEEEEEEEEeeCCCCCC-C---CCCCEEEEEEEEcCCCC
Confidence 4468888888863 34589999999999999876 2 55 99999999 2
Q ss_pred CEEEeecccCCCCCCeeccEEEEEee--CCCceEEEEEEeCCcCCCCCCCCC-CCccEEEEEEcccccC-CceEEEEEee
Q 003975 400 NKWIRTRTILDTLAPRWNEQYTWDVY--DPCTVITIGVFDNCYVNGSKDDAK-DQRIGKVRIRLSTLET-DRIYTHYYPL 475 (782)
Q Consensus 400 ~~~~rT~~~~~t~~P~wne~~~f~v~--~~~~~l~i~v~d~~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~w~~L 475 (782)
....+|+++++|+||+|||.|.|.+. +....|.|+|||++.++ + |++||++.|+|+++.. +.....||+|
T Consensus 62 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L 135 (153)
T 3fbk_A 62 LRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQS------RQSGLIGCMSFGVKSLLTPDKEISGWYYL 135 (153)
T ss_dssp TTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSG------GGCEEEEEEEEEHHHHTC--CCEEEEEEC
T ss_pred ccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCC------CCCcEEEEEEEEHHHhcCCCCccccEEEC
Confidence 35799999999999999999999994 44567999999999765 5 8999999999999985 7788999999
Q ss_pred ee
Q 003975 476 LL 477 (782)
Q Consensus 476 ~~ 477 (782)
..
T Consensus 136 ~~ 137 (153)
T 3fbk_A 136 LG 137 (153)
T ss_dssp BC
T ss_pred CC
Confidence 86
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=156.81 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=99.1
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCccccEEEEEe--c
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQIFAFSK--E 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne~f~f~~--~ 96 (782)
.|...+++.|+. ..+.|.|+|++|++|+..| .|.+||||++.+. ..+++|+++++|.||+|||+|.|.+ .
T Consensus 13 ~G~~~lsL~y~~--~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 89 (153)
T 3fbk_A 13 QGAGQLRLSIDA--QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE 89 (153)
T ss_dssp CCCCEEEEEEEE--SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred CCEEEEEEEEEC--CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence 355667777665 6689999999999999999 6999999999993 3578999999999999999999998 4
Q ss_pred cCCCCeEEEEEEeCCCC-C-CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC
Q 003975 97 RLQSSLLEVTVKDKDIG-K-DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~-d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g 150 (782)
+. ...|.|+|||++.. + |++||++.++|.++.... ....+||+|.+...
T Consensus 90 ~~-~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~----~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 90 DD-QKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD----KEISGWYYLLGEHL 140 (153)
T ss_dssp GT-TSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC------CCEEEEEECBCTTG
T ss_pred Hh-CCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC----CccccEEECCChhh
Confidence 44 35699999999997 5 999999999999997511 13678999988653
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=150.05 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=97.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C-eEeeeccccCCCCCccccEEEEEecc--
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---N-YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~-~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
.|...+++.|+. ..+.|.|+|++|+ ++|..|.+||||++++. + .+++|+++++|+||+|||+|.|.+..
T Consensus 12 ~G~l~~sl~y~~--~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 12 APKLHYCLDYDC--QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred ceEEEEEEEEeC--CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 455667777765 5689999999999 46778999999999994 2 36899999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g 150 (782)
.....|.|+|||+|.+ +|++||++.++|.++.... ...+|++|....+
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSGP 135 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCSC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcc-----cccceeeCcCCCc
Confidence 3467899999999998 9999999999999996432 3679999988543
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-17 Score=153.85 Aligned_cols=119 Identities=25% Similarity=0.296 Sum_probs=99.7
Q ss_pred ccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC---
Q 003975 325 EKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN--- 400 (782)
Q Consensus 325 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--- 400 (782)
....|+|.+++.+ .+..|.|.|+|++|+||+.++.. |. ||||++++++
T Consensus 8 ~~~~G~l~~~l~y-------------------------~~~~~~L~V~v~~a~~L~~~d~~---g~~dpyv~v~l~~~~~ 59 (159)
T 1tjx_A 8 LEKLGDICFSLRY-------------------------VPTAGKLTVVILEAKNLKKMDVG---GLSDPYVKIHLMQNGK 59 (159)
T ss_dssp GGCCCEEEEEEEE-------------------------ETTTTEEEEEEEEEESCCCCSTT---SCCCEEEEEEEEETTE
T ss_pred cCcCCeEEEEEEE-------------------------cCCCCEEEEEEEEeeCCCCccCC---CCCCeEEEEEEEeCCc
Confidence 3456999999986 33457999999999999988643 66 9999999952
Q ss_pred --EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc------------
Q 003975 401 --KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL------------ 463 (782)
Q Consensus 401 --~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------ 463 (782)
..+||+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||.+.|++..+
T Consensus 60 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~l~~ 133 (159)
T 1tjx_A 60 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLA 133 (159)
T ss_dssp EEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred eeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC------CCceEEEEEECCCCCCcHHHHHHHHHH
Confidence 478999999999999999999998753 358999999999876 899999999999953
Q ss_pred cCCceEEEEEeeee
Q 003975 464 ETDRIYTHYYPLLL 477 (782)
Q Consensus 464 ~~~~~~~~w~~L~~ 477 (782)
..+....+||+|..
T Consensus 134 ~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 134 NPRRPIAQWHTLQV 147 (159)
T ss_dssp STTCCEEEEEECBC
T ss_pred CCCCeeeeEEECcC
Confidence 34567889999975
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=150.54 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=90.0
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCCCCCeeccEEEEE-eeC---CCceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYTWD-VYD---PCTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t~~P~wne~~~f~-v~~---~~~~l~i~v 435 (782)
.|.|.|+|++|+||+. +. .|. ||||++++ +....||+++++|+||+|||.|.|. +.. ....|.|+|
T Consensus 19 ~~~L~V~V~~a~~L~~-~~---~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-ED---GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp TTEEEEEEEEEECCCC-TT---SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred CCEEEEEEEEeeCCCC-CC---CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 4799999999999996 42 355 99999999 4567999999999999999999999 753 357999999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||++.++ +|++||++.|+|+++..+....+||+|..
T Consensus 95 ~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 95 LSAESLR------ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EECCSSS------CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EECCCCC------CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999876 89999999999999998888999999975
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=150.20 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=98.9
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CE
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NK 401 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~ 401 (782)
...|+|.+++.+. +..+.|.|+|++|+||+.++.. .+. ||||++++. .+
T Consensus 6 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~--~~~~dpyv~v~~~~~~~~ 58 (138)
T 1ugk_A 6 SGLGTLFFSLEYN-------------------------FERKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKH 58 (138)
T ss_dssp CCCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCS
T ss_pred CccEEEEEEEEEE-------------------------CCCCEEEEEEEEeeCCCCCCCC--CCCCCCEEEEEEecCCCc
Confidence 4469999998762 3457999999999999988641 255 999999995 37
Q ss_pred EEeecccCCCCCCeeccEEEEE-eeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCc-eEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWD-VYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR-IYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~-v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~ 476 (782)
.+||+++++|+||+|||.|.|. +... ...|.|+|||++.++ +|++||++.|+|.++..+. ....|++|.
T Consensus 59 ~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred eEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC------CCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 8999999999999999999996 6532 459999999999876 8999999999999997754 446679987
Q ss_pred ec
Q 003975 477 LL 478 (782)
Q Consensus 477 ~~ 478 (782)
..
T Consensus 133 ~~ 134 (138)
T 1ugk_A 133 SG 134 (138)
T ss_dssp SS
T ss_pred cC
Confidence 53
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=157.30 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=100.3
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~ 97 (782)
.|...++..|+. ..+.|.|+|++|++|+..| ..|.+||||++.+.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 9 ~G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 86 (148)
T 3fdw_A 9 TGRIAFSLKYEQ--QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86 (148)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCS
T ss_pred ceEEEEEEEEeC--CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeCh
Confidence 455566666654 6789999999999999988 579999999999963 47899999999999999999999864
Q ss_pred C--CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 98 L--QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 98 ~--~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
. ....|.|+|||++.. +|++||++.++|.++..+. ...+||+|.+..+.
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK-----KLDHCLPLHGKISA 138 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC-----CSEEEEECBCC---
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccC-----CccceEECcCcccc
Confidence 2 356799999999998 8999999999999997643 25699999987543
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=150.40 Aligned_cols=115 Identities=24% Similarity=0.343 Sum_probs=95.4
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----E
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----K 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~ 401 (782)
.|+|.+++++. +..|.|.|.|++|+||+.++.. |. ||||++++++ .
T Consensus 2 ~G~l~~sl~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~~~ 53 (138)
T 3n5a_A 2 RGELLLSLCYN-------------------------PSANSIIVNIIKARNLKAMDIG---GTSDPYVKVWLMYKDKRVE 53 (138)
T ss_dssp CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCBTT---TBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEEc-------------------------CCCCeEEEEEEEeeCCCCcCCC---CCcCeEEEEEEEeCCCccc
Confidence 48899988862 3457999999999999988643 56 9999999953 4
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCCC---ceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc------------CC
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDPC---TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE------------TD 466 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~~---~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~------------~~ 466 (782)
..+|++++++.||+|||.|.|.+.... ..|.|+|||++.++ +|++||++.|+|.++. .+
T Consensus 54 ~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~ 127 (138)
T 3n5a_A 54 KKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLS------RNDVIGKIYLSWKSGPGEVKHWKDMIARPR 127 (138)
T ss_dssp EEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSS------CCEEEEEEEESSSSCHHHHHHHHHHHHSTT
T ss_pred eEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCC------CCcEEEEEEEccccCChHHHHHHHHHhCCC
Confidence 799999999999999999999987543 58999999999876 8999999999999753 44
Q ss_pred ceEEEEEeee
Q 003975 467 RIYTHYYPLL 476 (782)
Q Consensus 467 ~~~~~w~~L~ 476 (782)
+...+|++|.
T Consensus 128 ~~~~~Wh~L~ 137 (138)
T 3n5a_A 128 QPVAQWHQLK 137 (138)
T ss_dssp CCEEEEEECB
T ss_pred CeEEEEeecC
Confidence 5566666664
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=151.89 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=89.7
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~ 438 (782)
|.|.|+|++|+||+.++.. +. ||||+|+++ ...+||+++++++||+|||.|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPMDPN---GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCCSTT---SCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCCCCC---CCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 5899999999999988643 66 999999996 4679999999999999999999999764 46899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+.++ +|++||++.|+|.++..+ ...+||+|..
T Consensus 108 d~~~------~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 108 DLTS------RNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp CSSS------CCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCC------CCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 9876 899999999999999876 4789999985
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=157.08 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=91.4
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEE-eCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVF-DNC 439 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~-d~~ 439 (782)
|.|.|+|++|+||+++|. ..|. ||||+|++.+ ..+||+++++|+||+|||+|.|.+......|.|+|| |++
T Consensus 30 ~~L~V~v~~a~~L~~~d~--~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQKPG--SKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp TEEEEEEEEEESCCCCC-----CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CEEEEEEEEeeCCCCCCc--CCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 699999999999998863 1356 9999999853 379999999999999999999999766789999999 999
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeec
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLL 478 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 478 (782)
.++ +|++||++.|+|+++..+....+||+|...
T Consensus 108 ~~~------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 108 RMD------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TTC------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCC------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 876 899999999999999988889999999863
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=148.39 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=96.6
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---C-
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---N- 400 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~- 400 (782)
...|+|++++.+. +..+.|.|+|++|++ +| ..|. ||||+|.+. +
T Consensus 10 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~---~d---~~g~sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 10 NQAPKLHYCLDYD-------------------------CQKAELFVTRLEAVT---SN---HDGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEE-------------------------TTTTEEEEEEEEEEC---CC---CSSCCCEEEEEEEEETTEE
T ss_pred CcceEEEEEEEEe-------------------------CCCCEEEEEEEEEEc---CC---CCCCcceEEEEEEEcCCCc
Confidence 3469999998763 234799999999994 33 3366 999999993 2
Q ss_pred EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 401 KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
..+||+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC------CCcEEEEEEEEcccccCcccccceeeCcC
Confidence 368999999999999999999998753 468999999999876 89999999999999987777789999986
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=152.69 Aligned_cols=118 Identities=28% Similarity=0.413 Sum_probs=99.8
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEE-ecc
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFS-KER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~-~~~ 97 (782)
.|...+++.|+ +..+.|.|+|++|++|+..+..|.+||||++++++ .+++|+++++|.||+|||+|.|. +..
T Consensus 15 ~G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 92 (142)
T 2chd_A 15 LGALEFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE 92 (142)
T ss_dssp CCEEEEEEEEE--GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred cceEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH
Confidence 35566666666 57789999999999999999999999999999975 68899999999999999999998 532
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 98 --LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 98 --~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
.....|.|+|||++.. +|++||++.++|.++..+. ....|++|+.+
T Consensus 93 ~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~p 141 (142)
T 2chd_A 93 EDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ-----RKNFNICLERV 141 (142)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC-----CEEEEEECBCC
T ss_pred HHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC-----ccEEEEecccC
Confidence 2246899999999998 8999999999999998653 35678888764
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=151.59 Aligned_cols=118 Identities=23% Similarity=0.301 Sum_probs=100.3
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC----
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---- 400 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---- 400 (782)
...|+|.+++.+. +..+.|.|+|++|+||+.++. .|. ||||++++++
T Consensus 13 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 13 TTLGALEFSLLYD-------------------------QDNSNLQCTIIRAKGLKPMDS---NGLADPYVKLHLLPGASK 64 (142)
T ss_dssp -CCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCCCT---TSCCCEEEEEEEESCCSG
T ss_pred CccceEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCC---CCCCCCEEEEEEEcCCCC
Confidence 4569999988763 345799999999999998864 366 9999999965
Q ss_pred -EEEeecccCCCCCCeeccEEEEE-eeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 401 -KWIRTRTILDTLAPRWNEQYTWD-VYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 401 -~~~rT~~~~~t~~P~wne~~~f~-v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
..+||+++++++||+|||.|.|. +... ...|.|+|||++.++ +|++||++.|+|+++..++....|++|
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFG------HNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTS------CEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCC------CCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 68999999999999999999998 5422 368999999999876 789999999999999988888888888
Q ss_pred ee
Q 003975 476 LL 477 (782)
Q Consensus 476 ~~ 477 (782)
..
T Consensus 139 ~~ 140 (142)
T 2chd_A 139 ER 140 (142)
T ss_dssp BC
T ss_pred cc
Confidence 63
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=152.85 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=100.6
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCC-ccC---CCCCC-CcEEEEEEC-
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQM-KSK---DGKLT-DAYCVAKYG- 399 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~-~~~---~~~~~-dpyv~v~~~- 399 (782)
...|+|.+++++. +..|.|.|+|++|+||+.. +.. +..+. ||||+|++.
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~ 64 (147)
T 2enp_A 10 YQLGMLHFSTQYD-------------------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64 (147)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEET
T ss_pred CcceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEe
Confidence 4569999999873 3457999999999999984 431 11245 999999995
Q ss_pred --CEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEe
Q 003975 400 --NKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474 (782)
Q Consensus 400 --~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 474 (782)
.+.+||+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....|++
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~ 138 (147)
T 2enp_A 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS------RHCVIGKVSVPLCEVDLVKGGHWWKA 138 (147)
T ss_dssp CCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC------CSCCCEEEEEETTTSCTTTCCCEEEC
T ss_pred CCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc------CCcEEEEEEEechhcCCCCCccEEEE
Confidence 3578999999999999999999998642 358999999999876 88999999999999987776788999
Q ss_pred eee
Q 003975 475 LLL 477 (782)
Q Consensus 475 L~~ 477 (782)
|..
T Consensus 139 L~~ 141 (147)
T 2enp_A 139 LIP 141 (147)
T ss_dssp CBC
T ss_pred eec
Confidence 985
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=152.58 Aligned_cols=114 Identities=32% Similarity=0.498 Sum_probs=97.4
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~- 98 (782)
|...++..|. .+.|.|+|++|++|+..|..|.+||||+|++++ .+++|+++++|.||+|||+|.|.+...
T Consensus 20 G~l~~~l~~~----~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 95 (149)
T 1a25_A 20 GRIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95 (149)
T ss_dssp CEEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred eEEEEEEEec----CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecccc
Confidence 4445555552 478999999999999999999999999999973 578999999999999999999998642
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
....|.|+|||++.. +|++||++.++|.++.... ..+||+|.+.
T Consensus 96 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~------~~~W~~L~~~ 140 (149)
T 1a25_A 96 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ 140 (149)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC------EEEEEECBCH
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc------cCCeEEccCC
Confidence 246899999999998 8999999999999997642 6789999875
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=152.80 Aligned_cols=120 Identities=30% Similarity=0.365 Sum_probs=99.1
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~- 97 (782)
.|...++..|+ +..+.|.|+|++|++|+.+|..| +||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 10 ~G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 86 (142)
T 2dmg_A 10 LGQIQLTIRHS--SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86 (142)
T ss_dssp SCEEEEEEEEE--TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred cceEEEEEEEe--CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH
Confidence 35556666664 46789999999999999999888 99999999942 57899999999999999999999853
Q ss_pred -CCCCeEEEEEEeCCCC-C--CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 98 -LQSSLLEVTVKDKDIG-K--DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~--d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.....|.|+|||++.. + +++||++.++|.++.... ...+||+|.+..+.
T Consensus 87 ~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~~ 139 (142)
T 2dmg_A 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSGP 139 (142)
T ss_dssp HHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCSC
T ss_pred HhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCCC
Confidence 2346899999999986 3 479999999999987643 36789999986544
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=154.69 Aligned_cols=115 Identities=22% Similarity=0.340 Sum_probs=98.7
Q ss_pred ccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE----
Q 003975 327 FSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK---- 401 (782)
Q Consensus 327 ~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~---- 401 (782)
..|+|.+++.+. .|.|.|+|++|+||+++|.. |. ||||++++++.
T Consensus 5 ~~G~i~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~---g~~Dpyv~v~~~~~~~~~ 54 (142)
T 1rh8_A 5 ITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNN---GYSDPFVKVYLLPGRGQV 54 (142)
T ss_dssp CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSS---SCSCCEEEEEETTSSCCC
T ss_pred cceEEEEEEEEc---------------------------CCEEEEEEEEecCCCCCCCC---CCCCceEEEEEecCCCcc
Confidence 469999998763 26999999999999998643 66 99999999752
Q ss_pred ----------EEeecccCCCCCCeeccEEEEE-eeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCc
Q 003975 402 ----------WIRTRTILDTLAPRWNEQYTWD-VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 402 ----------~~rT~~~~~t~~P~wne~~~f~-v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
.+||+++++|+||+|||.|.|. +.. ....|.|+|||++.++ +|++||++.|+|+++..+.
T Consensus 55 ~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~l~~~~ 128 (142)
T 1rh8_A 55 MVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLD 128 (142)
T ss_dssp EECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSS------CEEEEEEEEEETTSCGGGT
T ss_pred cccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCC------CCceEEEEEEeccccccCC
Confidence 5899999999999999999997 542 3579999999999876 8999999999999998777
Q ss_pred eEEEEEeeee
Q 003975 468 IYTHYYPLLL 477 (782)
Q Consensus 468 ~~~~w~~L~~ 477 (782)
...+||+|..
T Consensus 129 ~~~~W~~L~~ 138 (142)
T 1rh8_A 129 NTPRWYPLKE 138 (142)
T ss_dssp TCCEEEECBC
T ss_pred CCCeEEECCc
Confidence 7789999985
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=156.93 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=98.1
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~ 98 (782)
|...++..| ..+.|.|+|++|++|+.+|. .|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 19 G~l~~~l~y----~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~- 93 (171)
T 2q3x_A 19 GDIQIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP- 93 (171)
T ss_dssp CEEEEEEEE----ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-
T ss_pred cEEEEEEEE----CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-
Confidence 555666666 46899999999999999996 79999999999964 37899999999999999999999854
Q ss_pred CCCeEEEEEE-eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 99 QSSLLEVTVK-DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 99 ~~~~L~i~V~-d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|+|| |+|.. +|++||++.++|.++..+. ...+||+|....
T Consensus 94 ~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 141 (171)
T 2q3x_A 94 QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS 141 (171)
T ss_dssp TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence 4688999999 99998 8999999999999997543 367999998764
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=152.15 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=98.6
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC----
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---- 400 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---- 400 (782)
...|+|.+++.+. +..|.|.|.|++|+||+.++.. |. ||||++++++
T Consensus 21 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d~~---g~~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 21 EERGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAMDAN---GYSDPFVKLWLKPDMGK 72 (166)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCSTT---SCCCEEEEEEEETC---
T ss_pred CccceEEEEEEEE-------------------------CCCCEEEEEEEEeECCCCccCC---CCCCcEEEEEEECCCCc
Confidence 4569999998862 3457999999999999988643 66 9999999965
Q ss_pred -EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc------------
Q 003975 401 -KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE------------ 464 (782)
Q Consensus 401 -~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~------------ 464 (782)
..+||+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~W~~l~~~ 146 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK------SNDYIGGCQLGISAKGERLKHWYECLKN 146 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCCHHHHHHHHHHHHC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCC------CCcEEEeEEEecccCCchhHHHHHHHhC
Confidence 689999999999999999999999753 459999999999876 8999999999999852
Q ss_pred CCceEEEEEeeee
Q 003975 465 TDRIYTHYYPLLL 477 (782)
Q Consensus 465 ~~~~~~~w~~L~~ 477 (782)
.++...+|++|..
T Consensus 147 ~~~~~~~Wh~L~~ 159 (166)
T 2cm5_A 147 KDKKIERWHQLQN 159 (166)
T ss_dssp TTCCEEEEEECBC
T ss_pred CCCcceEeeECCC
Confidence 3556677777764
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=148.76 Aligned_cols=120 Identities=26% Similarity=0.302 Sum_probs=98.8
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEE-ecc-
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFS-KER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~-~~~- 97 (782)
.|...++..|+ +..+.|.|+|++|++|+.+|.. |.+||||++++.+ ++++|+++++|.||+|||+|.|. +..
T Consensus 8 ~G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~ 85 (138)
T 1ugk_A 8 LGTLFFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85 (138)
T ss_dssp CCEEEEEEEEE--GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred cEEEEEEEEEE--CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHH
Confidence 35555666655 4678999999999999999985 8999999999963 68999999999999999999995 542
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.....|.|+|||++.+ +|++||++.++|.++..... ....|++|....
T Consensus 86 ~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~~l~~~~ 135 (138)
T 1ugk_A 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG----KMLMNREIISGP 135 (138)
T ss_dssp TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTC----CEEEEEECBSSS
T ss_pred HhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCC----cchhhhhhhcCC
Confidence 2357899999999998 89999999999999976532 235679998754
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=151.52 Aligned_cols=121 Identities=30% Similarity=0.360 Sum_probs=97.7
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~- 97 (782)
.|...+++.|. +..+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|.+..
T Consensus 11 ~G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 88 (159)
T 1tjx_A 11 LGDICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (159)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred CCeEEEEEEEc--CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH
Confidence 45455555554 46789999999999999999999999999999953 46899999999999999999999853
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc----------CCCCCCCCCCCCEEEEeccCC
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQV----------PLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l----------~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.....|.|+|||++.. +|++||++.+++..+ .... .....+||+|....
T Consensus 89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~---~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP---RRPIAQWHTLQVEE 149 (159)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST---TCCEEEEEECBCHH
T ss_pred HhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC---CCeeeeEEECcCcc
Confidence 2356899999999998 899999999999854 2211 12356899997643
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=150.43 Aligned_cols=103 Identities=28% Similarity=0.414 Sum_probs=89.1
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
|...+++. +.+..+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|.+..
T Consensus 24 G~l~~~l~--y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 101 (166)
T 2cm5_A 24 GKILVSLM--YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101 (166)
T ss_dssp CEEEEEEE--EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred ceEEEEEE--EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHh
Confidence 44445544 4557789999999999999999999999999999975 57899999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVP 129 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~ 129 (782)
+....|.|+|||++.. ++++||++.+++.++.
T Consensus 102 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred cCCCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 2356899999999998 8999999999999863
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=149.81 Aligned_cols=119 Identities=30% Similarity=0.348 Sum_probs=98.1
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCC-CC------CCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEE
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVM-DV------SGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAF 93 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~-d~------~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f 93 (782)
.|...+++.|+- ..+.|.|+|++|++|+.. |. .|.+||||+|++.+ ++++|+++++|.||+|||+|.|
T Consensus 12 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f 89 (147)
T 2enp_A 12 LGMLHFSTQYDL--LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF 89 (147)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEE
T ss_pred ceEEEEEEEEcC--CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEE
Confidence 455666666654 668999999999999984 43 35899999999963 5789999999999999999999
Q ss_pred Eecc--CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 94 SKER--LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 94 ~~~~--~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.+.. .....|.|+|||++.+ ++++||++.++|.++.... ....|+.|....
T Consensus 90 ~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~ 143 (147)
T 2enp_A 90 EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK-----GGHWWKALIPSG 143 (147)
T ss_dssp CCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTT-----CCCEEECCBCCC
T ss_pred EeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCC-----CccEEEEeecCC
Confidence 9853 2346899999999998 8999999999999997643 246899998753
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=146.76 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=88.2
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CCE-
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GNK- 401 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~- 401 (782)
...|+|.+++.+. +..+.|.|.|++|+||+.++.. |. ||||+|++ ++.
T Consensus 14 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 14 SGRGELLVSLCYQ-------------------------STTNTLTVVVLKARHLPKSDVS---GLSDPYVKVNLYHAKKR 65 (153)
T ss_dssp --CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEE
T ss_pred ccccEEEEEEEEc-------------------------CCCCEEEEEEEEeECCCCcCCC---CCCCeEEEEEEEeCCeE
Confidence 4569999998863 3357999999999999988643 56 99999999 443
Q ss_pred --EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 --WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 --~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
.+||+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+.. +....+||+|.
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~------~~~~lG~~~i~l~~~--~~~~~~W~~l~ 137 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS------RNEVIGRLVLGATAE--GSGGGHWKEIC 137 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTS------CCEEEEEEEESTTCC--SHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCC------CCcEEEEEEECCCCC--chHHHHHHHHH
Confidence 68999999999999999999998764 368999999999876 899999999999983 22234444443
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=149.13 Aligned_cols=102 Identities=34% Similarity=0.484 Sum_probs=81.7
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe---EeeeccccCCCCCccccEEEEEeccC
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY---KGITKHLEKNQNPVWNQIFAFSKERL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~kT~~i~~t~nP~Wne~f~f~~~~~ 98 (782)
.|...++..| .+..+.|.|+|++|++|+..|..|.+||||+|++ ++. +++|+++++|+||+|||+|.|.+...
T Consensus 16 ~G~l~~~l~y--~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 93 (153)
T 1w15_A 16 RGELLVSLCY--QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93 (153)
T ss_dssp CCEEEEEEEE--ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred ccEEEEEEEE--cCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence 3444555554 4467899999999999999998999999999999 443 67999999999999999999998643
Q ss_pred --CCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 003975 99 --QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQ 127 (782)
Q Consensus 99 --~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~ 127 (782)
....|.|+|||++.. ++++||++.+++.+
T Consensus 94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 347899999999998 89999999999988
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=146.79 Aligned_cols=103 Identities=35% Similarity=0.519 Sum_probs=88.7
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~- 98 (782)
|...++..|+ +..+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|.+...
T Consensus 3 G~l~~sl~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 80 (138)
T 3n5a_A 3 GELLLSLCYN--PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80 (138)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGG
T ss_pred cEEEEEEEEc--CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhh
Confidence 4455666555 46789999999999999999999999999999964 478999999999999999999998642
Q ss_pred -CCCeEEEEEEeCCCC-CCceeEEEEEEccccC
Q 003975 99 -QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVP 129 (782)
Q Consensus 99 -~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~ 129 (782)
....|.|+|||++.. +|++||++.+++.++.
T Consensus 81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 346899999999998 9999999999998753
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=137.90 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=84.8
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccC-CCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~-~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
.|.|.|+|++|++|+. .|. ||||+++ ++..+|++++ ++.||+|||.|.|.+.++...|.|+|||++ ++
T Consensus 4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 73 (131)
T ss_dssp CEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred ceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence 4799999999998852 255 9999999 3345666665 699999999999999988789999999999 76
Q ss_pred CCCCCCCCccEEEEEEcccccCCc--eEEEEEeeeec----CC--CCCC--cCcEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDR--IYTHYYPLLLL----TP--SGLK--NNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~--~~~~w~~L~~~----~~--~g~~--~~G~i~l~~~~ 495 (782)
+|++||++.|+|+++.... ....|.++... .. .|.. ..+.+.+.++|
T Consensus 74 -----~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 74 -----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp -----CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred -----CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 8999999999999986432 12245555421 11 1211 14557777776
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=139.63 Aligned_cols=87 Identities=30% Similarity=0.418 Sum_probs=73.2
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeecccc-CCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLE-KNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
.++.|.|+|++|++|+. .|.+||||+++ ++..+|+++. +|.||+|||+|.|.+.+. ...|.|+|||+| . +|
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 75 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 75 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCE
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCC
Confidence 36799999999998853 68899999999 3334455554 799999999999999864 567999999999 7 99
Q ss_pred ceeEEEEEEccccCCC
Q 003975 116 DFVGRVSLDLSQVPLR 131 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~ 131 (782)
++||++.++|.++...
T Consensus 76 d~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 76 TMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEEEGGGSCBC
T ss_pred CeEEEEEEEHHHhhhc
Confidence 9999999999998754
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=134.99 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=101.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeecccc-CCCCCccccEEEEEecc--CCCCeEEEEEEeCCCC-CCc
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLE-KNQNPVWNQIFAFSKER--LQSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~-~t~nP~Wne~f~f~~~~--~~~~~L~i~V~d~d~~-~d~ 116 (782)
-|+|+|.+|.+|+ |++|||+++.+.+.+++|++++ ++.||+|||.|.|++.. .....|.|.|||++.+ +++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr 96 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK 96 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence 4899999999998 5789999999999999999998 69999999999999863 3578999999999999 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+||++.++|+++..... ...+.+|.+.++.. ..|+|.+++.|.+.
T Consensus 97 lIG~~~i~Lq~lv~~~~-----l~l~~~LvD~n~~~-~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 97 LIGTFRMVLQKVVEENR-----VEVSDTLIDDNNAI-IKTSLSMEVRYQAA 141 (144)
T ss_dssp EEEEEEEESHHHHHHSE-----EEEEEEEECTTSCE-EEEEEEEEEEEEET
T ss_pred EEEEEEEEhHHhccCCe-----EEEeecccCCCCCc-cccEEEEEEEecCC
Confidence 99999999999987542 33567888888776 66999999999863
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=130.95 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=101.4
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccC-CCCCCeeccEEEEEeeC---CCceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~-~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~ 441 (782)
-.|+|.|.+|.||+ |+ |||+++.+-+.+++|+++. .+.||+|||.|+|++.- .+..|.|.|+|++.+
T Consensus 21 msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 21 MALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 37999999999998 46 9999999999999999998 59999999999999974 467999999999998
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
+ ++.+||++.|+|.++..+.....+-+|.+...+ .-.++|.++++|++..
T Consensus 93 ~------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 93 F------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQAAD 142 (144)
T ss_dssp S------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEETT
T ss_pred c------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecCCC
Confidence 7 899999999999999888877778888764432 2248899999987754
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-15 Score=140.16 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=89.5
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeecccc-CCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLE-KNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
.++.|.|+|++|++|+ ..|.+||||+++ ++..+|+++. +|.||+|||+|.|.+.+. ...|.|+|||+| . +|
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 84 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 84 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCC
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCC
Confidence 3679999999999884 268899999999 3345666665 689999999999999864 567999999999 6 99
Q ss_pred ceeEEEEEEccccCCCCCCCC--CCCCEEEEeccCCCCc-----ccceEEEEEEEec
Q 003975 116 DFVGRVSLDLSQVPLRVPPDS--PLAPQWYRLEDKKGDQ-----TTKGEIMLAVWMG 165 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~--~~~~~w~~L~~~~g~~-----~~~G~l~l~~~~~ 165 (782)
++||++.|+|.++.... .+. ...+.|+.+....|.. ...|.+++.+++.
T Consensus 85 d~iG~~~i~L~~l~~~~-~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 85 TMVGTVWIPLRTIRQSN-EEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEEGGGSCBCS-SCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEHHHhcccC-cCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 99999999999987543 121 1233455555444431 1345677777764
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=138.36 Aligned_cols=117 Identities=19% Similarity=0.272 Sum_probs=88.0
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccC-CCCCCeeccEEEEEeeCCCceEEEEEEeCCcCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVN 442 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~-~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~ 442 (782)
..+.|+|+|++|++|+. .++ ||||+++ ++..||++++ ++.||+|||.|.|.+.++...|.|+|||+| ++
T Consensus 12 ~~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence 46799999999998852 255 9999999 3346777776 699999999999999988789999999999 66
Q ss_pred CCCCCCCCCccEEEEEEcccccCCc------eEEEEEeeeecCCC--CC--CcCcEEEEEEEEE
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDR------IYTHYYPLLLLTPS--GL--KNNGELHLALRFT 496 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~~~--g~--~~~G~i~l~~~~~ 496 (782)
+|++||++.|+|+++.... ....||++.....+ |. ...|.++++++|.
T Consensus 83 ------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 83 ------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp ------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 8999999999999985432 34455554432211 11 1245677777763
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=161.27 Aligned_cols=112 Identities=18% Similarity=0.308 Sum_probs=96.7
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC--CCceEEEEEEeCCc
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD--PCTVITIGVFDNCY 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~--~~~~l~i~v~d~~~ 440 (782)
...|.|+|+|++|+||+. |.. |+ ||||+|+++++.+||+++++++||+|||.|.|.+.+ ....|.|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~~---g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DYT---TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SSC---SCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc-ccC---CCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 347899999999999997 643 56 999999999999999999999999999999998753 57799999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
++ +|++||++.++|.. + ....|.+|. .|.|++++.+++.
T Consensus 467 ~~------~dD~LG~~~~~L~~---g-~~~~~~~l~---------~G~l~~~~~~~c~ 505 (540)
T 3nsj_A 467 GW------DDDLLGSCDRSPHS---G-FHEVTCELN---------HGRVKFSYHAKCL 505 (540)
T ss_dssp SS------CCEEEEEEEECCCS---E-EEEEEEECS---------SSEEEEEEEEEEC
T ss_pred CC------CCCEEEEEEEEeeC---C-cEEEEEEcC---------CeEEEEEEEEEEC
Confidence 76 88999999999983 3 467898875 4999999887764
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=165.17 Aligned_cols=118 Identities=26% Similarity=0.439 Sum_probs=102.1
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeCCcC
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVFDNCYV 441 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~~~~ 441 (782)
...|.|+|+|++|+||+++|.. |. ||||++.++++.++|+++++|+||+|||.|.|.+..+. ..|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~---~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPN---GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTT---SCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCCCCC---CCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4578999999999999988643 66 99999999999999999999999999999999998764 6899999999987
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCce----EEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRI----YTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+ +|++||++.++|+++..+.. ...|++|.. ...|+|+++++++
T Consensus 461 ~------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWVRFDLQ 507 (510)
T ss_dssp S------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SSSCEEEEEEEEE
T ss_pred C------CCCceEEEEEEHHHhccccCCCCceeeeecCCC------CCCceEEEEEEEE
Confidence 6 89999999999999976543 678999964 2459999998874
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=165.29 Aligned_cols=123 Identities=24% Similarity=0.387 Sum_probs=105.4
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
...+.|.|+|++|++|+..|..|.+||||++.+++++++|+++++|+||+|||+|.|.+.......|.|+|||+|.. +|
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~ 463 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD 463 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999877778899999999998 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
++||++.+++.++..+..... ....|++|.+. ..|+|.+.+.+.
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~~~-----~~G~i~l~~~l~ 507 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKG-PMTRRLLLHEV-----PTGEVWVRFDLQ 507 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHC-SCCEEEECBSS-----SSCEEEEEEEEE
T ss_pred CceEEEEEEHHHhccccCCCC-ceeeeecCCCC-----CCceEEEEEEEE
Confidence 999999999999975422111 25689999864 268888887653
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=160.47 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=95.3
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-CCCCeEEEEEEeCCCC-C
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~d~~-~ 114 (782)
..++.|.|+|++|++|+. |..|.+||||+|++++++.+|+++++|+||+|||+|.|.+.. .....|+|+|||+|.. +
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~ 469 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD 469 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSC
T ss_pred CcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCC
Confidence 348899999999999998 999999999999999999999999999999999999998643 3578899999999998 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
||+||++.++|.. + ....|++|. .|+|.+++...
T Consensus 470 dD~LG~~~~~L~~---g------~~~~~~~l~--------~G~l~~~~~~~ 503 (540)
T 3nsj_A 470 DDLLGSCDRSPHS---G------FHEVTCELN--------HGRVKFSYHAK 503 (540)
T ss_dssp CEEEEEEEECCCS---E------EEEEEEECS--------SSEEEEEEEEE
T ss_pred CCEEEEEEEEeeC---C------cEEEEEEcC--------CeEEEEEEEEE
Confidence 9999999999872 2 145788764 37888876654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=158.55 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=104.2
Q ss_pred ceeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eEeeeccccCC-CCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 38 LMHYLCVNVVKARNLPVMDV--SGSLDPYVEVKLGN-----YKGITKHLEKN-QNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~kT~~i~~t-~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
..+.|.|+|++|++|+..+. .|.+||||+|.+.+ .++||++++++ .||+|||+|.|.+.......|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 56799999999999998874 68999999999954 57899999998 999999999999976555789999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 110 KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+|.. +|++||++.++|..|..+ -+|++|.+..|.....|.|.+.+.+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9988 999999999999999753 26999999888764568888888663
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-15 Score=166.93 Aligned_cols=122 Identities=20% Similarity=0.340 Sum_probs=22.2
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCE-EEeecccCCC---CCCeeccEEEEEeeCCCceEEEEEEeC-C
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNK-WIRTRTILDT---LAPRWNEQYTWDVYDPCTVITIGVFDN-C 439 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~-~~rT~~~~~t---~~P~wne~~~f~v~~~~~~l~i~v~d~-~ 439 (782)
..|.|+|+|++|+||+++| ||||++.++++ +.||+++++| +||+|||.|.|.+......|.|+|||+ +
T Consensus 9 ~~~~L~V~VieAk~L~~~d-------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d 81 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK-------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD 81 (483)
T ss_dssp EEECC----------------------------------------------------CCEECC-----------------
T ss_pred eccEEEEEEEEcCCcCCCC-------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence 4579999999999998653 89999999875 6899999999 999999999999765568999999995 4
Q ss_pred c---CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCC---------------------CCCCcCcEEEEEEEE
Q 003975 440 Y---VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP---------------------SGLKNNGELHLALRF 495 (782)
Q Consensus 440 ~---~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~---------------------~g~~~~G~i~l~~~~ 495 (782)
. .+ +|++||++.|+++++..+....+||+|..... ++.+..|.|+|+++|
T Consensus 82 ~~~~~~------~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~ 155 (483)
T 3bxj_A 82 KKRKKD------KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARY 155 (483)
T ss_dssp -------------------------------CCEECC--------------------------------------CEEEE
T ss_pred ccccCC------CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEe
Confidence 2 33 89999999999999998888899999975432 122346999999999
Q ss_pred EEcc
Q 003975 496 TCTA 499 (782)
Q Consensus 496 ~~~~ 499 (782)
+...
T Consensus 156 ~~~~ 159 (483)
T 3bxj_A 156 QTMS 159 (483)
T ss_dssp EECC
T ss_pred eeee
Confidence 7654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=153.92 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=98.6
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCC-CCCeeccEEEEEeeCCC-ceEEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDT-LAPRWNEQYTWDVYDPC-TVITIGVF 436 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t-~~P~wne~~~f~v~~~~-~~l~i~v~ 436 (782)
..+.|+|+|++|++|+.++.. ..+. ||||+|.+.+ .+.||++++++ +||+|||.|.|.+..+. ..|.|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~-~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKN-KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSC-SSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCccccc-ccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 458999999999999987631 1356 9999999944 68999999997 99999999999998763 68999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCC-cCcEEEEEEEE
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLK-NNGELHLALRF 495 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~-~~G~i~l~~~~ 495 (782)
|+|.++ +|++||++.|+|+.|..|. +|++|.+.. |.. ..|.|.+.+.|
T Consensus 574 D~D~~~------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~--g~~~~~~~L~v~i~~ 622 (624)
T 1djx_A 574 DYDSSS------KNDFIGQSTIPWNSLKQGY---RHVHLLSKN--GDQHPSATLFVKISI 622 (624)
T ss_dssp ECCSSS------CCEEEEEEEEEGGGBCCEE---EEEEEECTT--SCEEEEEEEEEEEEE
T ss_pred EcCCCC------CCceeEEEEEEHHHcCCCc---EEEeCCCCC--cCCCCceEEEEEEEE
Confidence 999876 8999999999999998763 599998633 222 24788888776
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=159.17 Aligned_cols=107 Identities=25% Similarity=0.435 Sum_probs=95.4
Q ss_pred cceeEEEEEEEEeeCCCC---CCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeC
Q 003975 37 ELMHYLCVNVVKARNLPV---MDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDK 110 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~---~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~ 110 (782)
.+.+.|.|+|++|++|+. +|..|.+||||+|++++ .++||+++++|+||+|||+|.|.+.......|.|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 357899999999999998 78889999999999984 678999999999999999999999876678999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 111 DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 111 d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
|...|++||++.++|.++..+. ...+|++|...
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~-----~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTC-----CCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCC-----ceEEEEecCCC
Confidence 9877999999999999997653 25799999764
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=155.17 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=92.4
Q ss_pred CceeEEEEEEEEeecCCC---CccCCCCCC-CcEEEEEECC---EEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEE
Q 003975 364 GSIGTLELGILSAKNLMQ---MKSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGV 435 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~---~~~~~~~~~-dpyv~v~~~~---~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v 435 (782)
++.|.|+|+|++|+||+. +|.. |+ ||||+|++++ +++||+++++++||+|||.|.|.+..+ ...|.|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~---g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDML---DTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHH---CCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCC---CCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEE
Confidence 457899999999999998 6543 66 9999999984 689999999999999999999999874 67999999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||+|.+ .|++||++.|+|.++..+....+|++|..
T Consensus 92 ~D~D~~-------~ddfIG~v~I~L~~L~~g~~~~~w~~L~~ 126 (749)
T 1cjy_A 92 MDANYV-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ 126 (749)
T ss_dssp EECCSS-------SCEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred EECCCC-------CCceeEEEEEEHHHcCCCCceEEEEecCC
Confidence 999975 38999999999999998888899999963
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-13 Score=151.38 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=18.1
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCC---CCCccccEEEEEeccCCCCeEEEEEEeC-C--
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKN---QNPVWNQIFAFSKERLQSSLLEVTVKDK-D-- 111 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t---~nP~Wne~f~f~~~~~~~~~L~i~V~d~-d-- 111 (782)
.+.|.|+|++|++|+++| ||||+++++++ ..||+++++| .||+|||+|.|.+... ...|.|+|||. |
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCcc
Confidence 467999999999999887 99999999886 6799999999 9999999999986543 57899999994 4
Q ss_pred -CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC----------------------cccceEEEEEEEecc
Q 003975 112 -IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD----------------------QTTKGEIMLAVWMGT 166 (782)
Q Consensus 112 -~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~----------------------~~~~G~l~l~~~~~~ 166 (782)
.. +|++||++.|++.++..+. ..++||+|.+..+. ....|.|.+++.|..
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~ 157 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157 (483)
T ss_dssp ----------------------------CCEECC--------------------------------------CEEEEEE
T ss_pred ccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence 24 8999999999999998653 36789999654320 124588888887753
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-11 Score=137.46 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=94.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCC-CCCcccc-EEEEE-eccCCCCeEEEEEEeC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKN-QNPVWNQ-IFAFS-KERLQSSLLEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t-~nP~Wne-~f~f~-~~~~~~~~L~i~V~d~ 110 (782)
..|.|+|++|++|+. ..+||||+|.+.+ .+++|+++.++ .||+||| +|.|. +.......|+|+|||+
T Consensus 725 ~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 479999999999985 3689999999965 35799999865 9999999 69998 6544456899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 111 DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 111 d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
| +++||++.++|..|..+ -++++|.+..|.....|.|.+.+.+..
T Consensus 801 d---ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T---TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 89999999999999754 257899998888656799999998874
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=135.03 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=94.9
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eEeeeccccC-CCCCccccE-EEEE-eccCCCCeEEEEEE
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGITKHLEK-NQNPVWNQI-FAFS-KERLQSSLLEVTVK 108 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~kT~~i~~-t~nP~Wne~-f~f~-~~~~~~~~L~i~V~ 108 (782)
.+.|.|+|++|++|+.. .+||||+|.+.+ .+++|+++++ +.||+|||+ |.|. +....-..|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 36899999999999853 689999999965 5679999986 599999998 9998 75544578999999
Q ss_pred eCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 109 DKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 109 d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
|++ +++||++.++|..|..+ -++++|.+..|.....+.|.+.+.+..
T Consensus 725 D~d---ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 725 EEN---GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp ETT---SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ecC---CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 985 79999999999999764 257899999888645689999888764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-11 Score=139.21 Aligned_cols=105 Identities=33% Similarity=0.563 Sum_probs=92.4
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEeeeccccCCCCCccccEEEEEeccC-CCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFSKERL-QSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~kT~~i~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~d~ 112 (782)
.+.|.|+|.+|++|+.+|..|.+||||++++ +..+.+|+++++|+||+|||+|.|.+... ....|.|+|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 4789999999999999999999999999999 33578999999999999999999998642 34569999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
. +|++||++.+++.++.... ...|+.|....
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~~ 282 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 282 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC------EEEEEECBCTT
T ss_pred ccccccccccccchhhhccCC------cccceeecccc
Confidence 8 9999999999999997642 46899998754
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=136.37 Aligned_cols=101 Identities=23% Similarity=0.413 Sum_probs=89.3
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCCCCCeeccEEEEEeeC--CCceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYTWDVYD--PCTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t~~P~wne~~~f~v~~--~~~~l~i~v~d~ 438 (782)
+.|.|.|++|+||.++|.. |. ||||++.+ +..+.+|+++++++||+|||.|.|.+.. ....|.|+|||+
T Consensus 172 ~~L~V~v~~a~~L~~~d~~---g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~ 248 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPMDPN---GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW 248 (674)
T ss_dssp SEEEEEEEEEESCCCCSTT---SSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred ceeeeeeecccccCCCCcc---cccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeec
Confidence 6899999999999998754 66 99999999 4467999999999999999999999874 345799999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|.++ +|++||.+.++++++.... ..+|++|..
T Consensus 249 d~~~------~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 249 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp CSSS------CCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccc------ccccccccccchhhhccCC-cccceeecc
Confidence 9876 8999999999999998765 489999975
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=133.70 Aligned_cols=112 Identities=22% Similarity=0.305 Sum_probs=91.7
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeec-cccC-CCCCcccc-EEEE-EeccCCCCeEEEEE
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITK-HLEK-NQNPVWNQ-IFAF-SKERLQSSLLEVTV 107 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~-~i~~-t~nP~Wne-~f~f-~~~~~~~~~L~i~V 107 (782)
..+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ +.||+||| +|.| .+.......|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 35789999999999984 4689999999943 357999 8875 58999999 6999 77654456899999
Q ss_pred EeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 108 KDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 108 ~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
||++ +++||++.++|..|..+ -+|++|.+..|.....+.|.+.+.+
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EEeC---CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEE
Confidence 9996 89999999999999753 3689999988775446788887765
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-10 Score=128.91 Aligned_cols=110 Identities=21% Similarity=0.283 Sum_probs=88.3
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC-------EEEeecccCC-CCCCeeccE-EEEE-eeCC-CceEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-------KWIRTRTILD-TLAPRWNEQ-YTWD-VYDP-CTVITIG 434 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-------~~~rT~~~~~-t~~P~wne~-~~f~-v~~~-~~~l~i~ 434 (782)
.+.|+|+|++|++|+.. ..||||+|.+.+ +++||+++++ ++||+|||+ |.|. |..| -..|+|.
T Consensus 649 ~~~L~V~Visaq~L~~~------~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~ 722 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK------QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII 722 (816)
T ss_dssp CEEEEEEEEEEECCCSS------CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEE
T ss_pred ceEEEEEEEEcccCCCC------CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEE
Confidence 47899999999999742 249999999954 6789999986 699999998 9998 7665 3589999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCC-cCcEEEEEEEEE
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLK-NNGELHLALRFT 496 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~-~~G~i~l~~~~~ 496 (782)
|||++ |++||++.|+|+.|..|. ++++|.+.. |.. ..+.|.+.+.+.
T Consensus 723 V~D~d----------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~--g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 723 VSEEN----------GKFIGHRVMPLDGIKPGY---RHVPLRNES--NRPLGLASVFAHIVAK 770 (816)
T ss_dssp EEETT----------SCEEEEEEEESTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EEecC----------CCeeeEEEEEHHHcCCcc---eEEEEeCCC--CCCCCceEEEEEEEEE
Confidence 99973 789999999999998873 579998643 222 237788887764
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.2e-10 Score=130.24 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=87.3
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC------EEEeecccCC-CCCCeecc-EEEEE-eeCC-CceEEEEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN------KWIRTRTILD-TLAPRWNE-QYTWD-VYDP-CTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~------~~~rT~~~~~-t~~P~wne-~~~f~-v~~~-~~~l~i~v~ 436 (782)
..|.|+|++|++|+.. ..||||+|.+.+ .++||+++++ ++||+||| .|.|. |..| ...|+|+||
T Consensus 725 ~~L~V~Visaq~L~~~------~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~ 798 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR------KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAF 798 (885)
T ss_dssp EEEEEEEEEEESCCSS------CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred eEEEEEEEEeccCccc------CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEE
Confidence 4899999999999841 249999999954 3589999976 59999999 69998 7655 458999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCC-cCcEEEEEEEEE
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLK-NNGELHLALRFT 496 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~-~~G~i~l~~~~~ 496 (782)
|++ |++||++.|+|+.|..|. ++++|.+.. |.. ..|.|.+.+.+.
T Consensus 799 D~d----------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~--g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 799 EEG----------GKFVGHRILPVSAIRSGY---HYVCLRNEA--NQPLCLPALLIYTEAS 844 (885)
T ss_dssp ETT----------TEEEEEEEEETTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred cCC----------ccEEeeEEEEHHHcCCCc---eEEEecCCC--CCccCceEEEEEEEEE
Confidence 974 689999999999998763 468887643 222 358899988875
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=127.99 Aligned_cols=111 Identities=17% Similarity=0.294 Sum_probs=86.2
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC------EEEeec-ccCC-CCCCeecc-EEEE-EeeCC-CceEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN------KWIRTR-TILD-TLAPRWNE-QYTW-DVYDP-CTVITI 433 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~------~~~rT~-~~~~-t~~P~wne-~~~f-~v~~~-~~~l~i 433 (782)
..|.|.|+|++|++|+.. ..||||+|.+.+ +++||+ ++++ ++||+||| .|.| .|..+ -..|+|
T Consensus 676 ~~~~L~V~Visa~~L~~~------~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~ 749 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRV 749 (799)
T ss_dssp TCEEEEEEEEEEESCCSS------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEE
T ss_pred eeeeEEEEEEeccccCcc------CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEE
Confidence 467999999999999841 239999999932 358999 8865 69999999 6999 88765 348999
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|||++ |++||++.|+|+.|..|. +|++|.+..... -..+.|.+.+.+
T Consensus 750 ~V~D~d----------~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~-~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 750 AVMEEG----------NKFLGHRIIPINALNSGY---HHLCLHSESNMP-LTMPALFIFLEM 797 (799)
T ss_dssp EEEETT----------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCE-EEEEEEEEEEEE
T ss_pred EEEEeC----------CCccceEeeehhhcCCCc---EEEeccCCCCCC-CCceEEEEEEEE
Confidence 999974 689999999999998763 589997533211 124777777765
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-09 Score=91.13 Aligned_cols=114 Identities=15% Similarity=0.259 Sum_probs=87.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe----Eeee-ccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY----KGIT-KHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGK 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~----~~kT-~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~ 114 (782)
..|+|.+.++.--+-+......||||.|.+... ..+| .++++|..|+|||.|.-.+++ ...|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 478899877764332223356899999999763 2365 888899999999999999987 6889999997754
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
++++.|+|.+.+|..+....+...+.|++|+. .|+|++.+.+.
T Consensus 82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-------~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMSVQYF 124 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEe
Confidence 99999999999998541111224678999986 68899888664
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=87.20 Aligned_cols=107 Identities=15% Similarity=0.282 Sum_probs=84.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEE----Eee-cccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCc
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKW----IRT-RTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCY 440 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~----~rT-~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~ 440 (782)
+.|+|...++.--+-+. .... ||||.|.+.... .+| .+.++|..|.|||.|.-.|.+ +..|.|.||+..
T Consensus 6 ~flRi~~~~~~~~~~~~---~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a- 80 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQA---EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA- 80 (126)
T ss_dssp CEEEEEEEEEECSSCCC---SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEET-
T ss_pred ccEEeeeccccccccCC---ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCC-
Confidence 47888887666322111 0123 999999986543 366 778889999999999999886 489999999753
Q ss_pred CCCCCCCCCCCccEEEEEEccccc-----CCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLE-----TDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-++|+.|+|++.+|. .+...+-|++|++ +|+|++.+++
T Consensus 81 ---------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--------~Gkl~~~i~~ 123 (126)
T 1yrk_A 81 ---------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--------QAKVLMSVQY 123 (126)
T ss_dssp ---------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--------SCEEEEEEEE
T ss_pred ---------CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--------CcEEEEEEEE
Confidence 389999999999997 4678899999975 7999999986
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=89.30 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=86.0
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-E---Eee-cccCCCCCCeeccEEEEEeeCCCceEEEEEEeCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-W---IRT-RTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNC 439 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~---~rT-~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~ 439 (782)
.+.|+|...++.-.+-+.. .... ||||.|.+... . .+| .+.++|..|+|||.|.-.|.+ ...|.|.||+..
T Consensus 9 ~~flRi~l~~~~~~~~~~~--~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a 85 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSC--QGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN 85 (138)
T ss_dssp CCCEEEEEEEEECCCCCCS--CCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS
T ss_pred CcceEEEeeccccCCCCCc--ccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC
Confidence 4578888877764332210 1124 99999998653 3 677 777889999999999999886 489999999753
Q ss_pred cCCCCCCCCCCCccEEEEEEccccc-----CCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLE-----TDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-++|+.|+|++.+|. .+...+-|++|+. .|+|++.+++
T Consensus 86 ----------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--------~Gkl~v~i~~ 128 (138)
T 2enj_A 86 ----------VDLISETTVELYSLAERCRKNNGKTEIWLELKP--------QGRMLMNARY 128 (138)
T ss_dssp ----------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--------SCEEEEEEEE
T ss_pred ----------CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--------CcEEEEEEEE
Confidence 389999999999997 4567899999975 7999999987
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=92.25 Aligned_cols=115 Identities=16% Similarity=0.377 Sum_probs=89.4
Q ss_pred eeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe----Eeee-ccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGNY----KGIT-KHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~----~~kT-~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~ 112 (782)
.+.|+|.+.++.-.+.+. .....||||.|.+... ..+| .++++|..|+|||.|.-.+.+ ...|.|.|++...
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~ 86 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV 86 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC
Confidence 357899998887554332 2346899999999763 2677 788889999999999999987 6889999997654
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 113 GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 113 ~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+|++.|+|.+.+|..+........+.|++|+. .|+|++.+.+.
T Consensus 87 ---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-------~Gkl~v~i~~~ 129 (138)
T 2enj_A 87 ---DLISETTVELYSLAERCRKNNGKTEIWLELKP-------QGRMLMNARYF 129 (138)
T ss_dssp ---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-------SCEEEEEEEEC
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEE
Confidence 89999999999998541101124678999986 68999998875
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=88.10 E-value=1.6 Score=39.63 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=87.1
Q ss_pred eccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEE--CC-eEeeeccccCCCCCccccEEEEEecc-------CCCC
Q 003975 33 YDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKL--GN-YKGITKHLEKNQNPVWNQIFAFSKER-------LQSS 101 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~--~~-~~~kT~~i~~t~nP~Wne~f~f~~~~-------~~~~ 101 (782)
..+.+.-+.+.|+|.++.-=+..- ..+..+|..-+.+ -+ +.+.|.+.. ..+|.+|.+-.+.+.. +.+.
T Consensus 11 ~~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~ 89 (156)
T 2yrb_A 11 IHLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKN 89 (156)
T ss_dssp SSCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHC
T ss_pred hhccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcC
Confidence 345666678999999987321110 1234577655555 45 456666665 8899999998888742 2356
Q ss_pred eEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 102 LLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 102 ~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
.|.++++......-+.||.|.|++.++..+.. ....-.+|.+..|....-|.|.+.+.+..
T Consensus 90 ~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 90 TITLEVHQAYSTEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp CEEEEEEEECSSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred CEEEEEEEeeCCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 78999988765477799999999999986532 12334578777663124899988887754
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.96 E-value=6.1 Score=38.07 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=33.5
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI 112 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~ 112 (782)
.++|.+.+.+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 468999999999999999999875 4457899999998654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=4.2 Score=48.29 Aligned_cols=92 Identities=12% Similarity=0.230 Sum_probs=62.6
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEE--CCEE----EeecccCCCCCCeeccEEEEEeeC---C-CceEEEEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKY--GNKW----IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~~~----~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i~v~ 436 (782)
..++|+|..+.++...+ ..+-||.+.+ |++. ..|..+.-..+|.|||.++|++.- | .+.|.|+||
T Consensus 217 ~~f~i~i~~~~~~~~~~-----~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 217 QPFSIELIEGRKVNADE-----RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp SEEEEEEEEEECCCC--------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred CceEEEEEEecccCCCC-----CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 48999999999987521 2378888765 7654 455555557789999999998862 3 679999999
Q ss_pred eCCcC--C---CC-CCCCCCCccEEEEEEcccc
Q 003975 437 DNCYV--N---GS-KDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 437 d~~~~--~---~~-~~~~~d~~lG~~~i~l~~l 463 (782)
+...- + .. .....+..||.+.++|-+-
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCT
T ss_pred EecCCccCccccccccccccceEEEEeeeEECC
Confidence 95321 1 00 0011345999999999884
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=82.78 E-value=4.8 Score=36.54 Aligned_cols=125 Identities=13% Similarity=0.152 Sum_probs=79.6
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCCC--cEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--------CceEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLTD--AYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--------CTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~d--pyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--------~~~l~i 433 (782)
+..+.++|+|.++. +.+.-....+..+ .||.+.+-.....+..+....+|.+|.+-.|.|... ...+.|
T Consensus 15 ~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l 93 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITL 93 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred CCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence 44568999998887 3221000001124 455555555444444444589999999999988532 237888
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEccccc-CCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE-TDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
++..... ..-+.||+++|+|.++. ....+..-.+|..... +...-|.|++.+++..
T Consensus 94 ELhqa~g-------~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g-~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 94 EVHQAYS-------TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG-DIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEECS-------SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS-CCTTSEEEEEEEEEEE
T ss_pred EEEEeeC-------CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC-CcceEEEEEEEEEEec
Confidence 8888541 24578999999999986 3444566667764321 2134699999998854
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=80.67 E-value=5.3 Score=47.86 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=62.0
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CCEE----EeecccCCCCCCeeccEEEEEeeC---C-CceEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GNKW----IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITIG 434 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~----~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i~ 434 (782)
...++|+|+.+.++.... ... +-||.+.+ |++. .+|+.+. ..+|.|||.++|++.- | .+.|.|+
T Consensus 354 ~~~f~v~i~~~~~~n~~~----~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~t 428 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI----RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLS 428 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC----SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred CCCEEEEEEEecCCCCCc----cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEE
Confidence 358999999999886422 223 88998877 6542 4444433 5578899999998862 3 7799999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccc
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
||+..... +.......||.+.++|-+-
T Consensus 429 l~~~~~~~--~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 429 ICSVKGRK--GAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp ECCCCCCC---------CCEEEEEESBCT
T ss_pred EEEecCcc--CcccccceeEEeeeeeEcc
Confidence 99975421 0011356899999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 782 | ||||
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-22 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 5e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-09 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 5e-22 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-14 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 6e-09 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 4e-21 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 8e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 8e-07 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 5e-21 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-12 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-12 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 4e-20 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 7e-07 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 7e-12 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 8e-11 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-19 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-08 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-07 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-19 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 9e-16 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-12 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-19 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-09 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-04 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-19 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-11 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-17 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-10 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-09 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-17 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-06 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 9e-09 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-15 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-08 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-07 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-14 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-05 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-12 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 4e-09 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 4e-11 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 9e-06 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 5e-12 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-05 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 6e-11 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 6e-06 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 1e-07 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 5e-04 |
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.2 bits (223), Expect = 4e-22
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 40 HYLCVNVVKARNLP---VMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAF 93
H V V++A + D+ + DPYVE+ + + + T+H + NPVWN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 94 SKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQT 153
+ Q ++LE+T+ D + D+ +G + +S + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQV----- 112
Query: 154 TKGEIMLAV 162
T+ + +++
Sbjct: 113 TEMVLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 5e-12
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 365 SIGTLELGILSAKNLMQMKSKD-GKLTDAYCVAKYG---NKWIRTRTILDTLAPRWNEQY 420
S + +L A + + D D Y + RTR + + P WNE +
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 421 TWDVYDPCT-VITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLT 479
+ + V+ I + D + D+ +G +S+++ +
Sbjct: 61 EFILDPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFIF---- 109
Query: 480 PSGLKNNGELHLALRFT 496
L ++L
Sbjct: 110 --NQVTEMVLEMSLEVA 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 1e-09
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 202 YYLRVFVFEAQDLVP---SDKGRAPDACVRIQLGNQL--RVTRPSHVRSVNPVWNEEHMF 256
+ V V A + D PD V + + R +NPVWNE F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 257 VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313
+ E+++ +T+ D DE LG V ++ + F ++ +
Sbjct: 63 ILDPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEV-----PFIFNQVT 113
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.2 bits (223), Expect = 5e-22
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL 98
M LCV V KA+ + + YV +K+ N K T + + P W Q F F RL
Sbjct: 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 99 QSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEI 158
L V V +K + D VG V + L + + +W L+ + EI
Sbjct: 57 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIM--ADSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.0 bits (168), Expect = 1e-14
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASE 260
+ L V V +A+ +K + V +++ N T VR P W ++ MF +
Sbjct: 1 MSLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI--AVRGSQPSWEQDFMFEINR 55
Query: 261 PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGA 320
+ V V ++ D ++G IP+R + Q +E W L ++ A+
Sbjct: 56 LD-LGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP---GEWLTLDSQAIMADSEI 110
Query: 321 EKNKEKFSSKILISFCLE 338
K+ +IL+ E
Sbjct: 111 CGTKDPTFHRILLDAHFE 128
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.8 bits (126), Expect = 6e-09
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVY 425
+ L +G+ AK + + Y K N T + P W + + +++
Sbjct: 1 MSLLCVGVKKAKFDGAQEK-----FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54
Query: 426 DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL--ETDRIYTHYYPLLLLTPSGL 483
+T+ V++ K D +G V I L T+ + + L +
Sbjct: 55 RLDLGLTVEVWN-------KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQAI 104
Query: 484 KNNGELHLALRFT 496
+ E+ T
Sbjct: 105 MADSEICGTKDPT 117
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.5 bits (216), Expect = 4e-21
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSK 95
V+ + L V V+KA +L D SG DP+ ++LGN + T + KN NP WN++F F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTT 154
+ +LEVTV D+D DF+G+V++ L + P Y L++K +Q
Sbjct: 62 KD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKNKDLEQAF 113
Query: 155 KGEIMLAV 162
KG I L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.4 bits (169), Expect = 8e-15
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVY 425
+G L++ +L A +L+ +D +C+ + GN ++T T+ L P WN+ +T+ +
Sbjct: 5 VGILQVKVLKAADLLAADF--SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK 62
Query: 426 DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKN 485
D V+ + VFD D +GKV I L ++ + + Y L
Sbjct: 63 DIHDVLEVTVFDE------DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AF 113
Query: 486 NGELHLALRF 495
G ++L +
Sbjct: 114 KGVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 8e-07
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF 262
L+V V +A DL+ +D D ++LGN R+ + +++NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKVFTFPIKDIH 65
Query: 263 EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLS 315
D++ VTV D + LG+ IP+ ++ P + L L
Sbjct: 66 -DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDLE 110
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.1 bits (215), Expect = 5e-21
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF- 93
H L V ++ A++LP + +PYV++ K TK ++K P WNQ F +
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 94 --SKERLQSSLLEVTVKDKD---IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
+ + +LE+T+ D+ + +F+G + ++L P WY+L+
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.8 bits (152), Expect = 2e-12
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL---GNQLRVTRPSHVR-SVNPV 249
K++F + L V + A+DL + GR + V+I + R V+ ++ P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 250 WNEEHMFVASEPFED---LIIVTV--EDRIRPGKDEILGRELIPVRNVPQRHETTKLPDP 304
WN+ ++ E ++ +T+ + R+R + E LG LI + E P
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE------P 119
Query: 305 RWFNL 309
W+ L
Sbjct: 120 HWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.8 bits (152), Expect = 2e-12
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVA-----KYGNKWIRTRTILDTLAPRWNEQYT 421
L + IL AK+L + DG+ + Y + RT+T+ TL P+WN+ +
Sbjct: 14 HQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 71
Query: 422 WDVYDPCT----VITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475
+ ++ I ++D V + + +G++ I L T D H+Y L
Sbjct: 72 YSPVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDDE-PHWYKL 124
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.8 bits (209), Expect = 4e-20
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAF--S 94
L V V+KAR+LP DVSG DPYV+V L + K T + N V+N++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP--------PDSPLAPQWYRL 145
E L+ +E V D + +++ +GR+ L + P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 146 ED 147
D
Sbjct: 136 CD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.1 bits (132), Expect = 1e-09
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 192 RSKVYFS----PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR--- 244
R ++ S L V V +A+ L SD D V++ L + +
Sbjct: 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 60
Query: 245 -SVNPVWNEEHMFVASEPFEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQ--RHE 297
+ N V+NE +F P E L + V D R ++E++GR ++ H
Sbjct: 61 CTPNAVFNELFVF--DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW 118
Query: 298 TTKLPDPR-----WFNL 309
PR W L
Sbjct: 119 KEICDFPRRQIAKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 7e-07
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI-----RTRTILDTLAPRWNEQYT 421
TL + +L A++L + L+D Y + +T T +NE +
Sbjct: 15 NTLTVVVLKARHLPKSDV--SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 72
Query: 422 WDVYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
+D+ I++ GS+++ IG++ + + + H+ +
Sbjct: 73 FDIPCESLEEISVEFLVLDSERGSRNE----VIGRLVLGATAEGSG--GGHWKEIC 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.7 bits (209), Expect = 5e-20
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-----ITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL TK ++ + NP WN+ F F K
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
E + L V + D D ++DF+G +S +S++ W++L ++
Sbjct: 77 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.3 bits (148), Expect = 7e-12
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Query: 362 RKGSI--------GTLELGILSAKNLMQMKSKDGKLTDAYCVAKY-----GNKWIRTRTI 408
R+G I L + + AKNL+ M L+D Y K +T+TI
Sbjct: 2 RRGRIYIQAHIDREVLIVVVRDAKNLVPMDP--NGLSDPYVKLKLIPDPKSESKQKTKTI 59
Query: 409 LDTLAPRWNEQYTWDVYDP--CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD 466
+L P WNE + + + + +++ ++D + ++ +G + +S L+
Sbjct: 60 KCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS------RNDFMGSLSFGISELQKA 113
Query: 467 RIYTHYYPLL 476
+ ++ LL
Sbjct: 114 GV-DGWFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (140), Expect = 8e-11
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 192 RSKVYFSPKL--YYLRVFVFEAQDLVPSDKGRAPDACVRIQL----GNQLRVTRPSHVRS 245
R ++Y + L V V +A++LVP D D V+++L ++ + + S
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS 62
Query: 246 VNPVWNEEHMFVASEPFED-LIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDP 304
+NP WNE F E +D + V + D +++ +G + + +
Sbjct: 63 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD------ 116
Query: 305 RWFNLHKPSLSAEEGAEKN 323
WF L LS EEG N
Sbjct: 117 GWFKL----LSQEEGEYFN 131
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.6 bits (203), Expect = 3e-19
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 23/128 (17%)
Query: 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKL--------------GNYKGITKHLEKNQN 84
+ L +++++ARNL D +G DP+V+V L YK TK+++K+ N
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 85 PVWNQIFAF---SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAP 140
P WNQ + S E+L LEVTV D D +DF+G V +DLS P
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TP 131
Query: 141 QWYRLEDK 148
+WY L+++
Sbjct: 132 RWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.6 bits (125), Expect = 1e-08
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV-------------RSVNPVW 250
L + + +A++LVP D D V++ L +S+NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 251 NEEHMFV---ASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
N+ ++ + + + VTV D R ++ LG LI + + T PRW+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT-----PRWY 134
Query: 308 NLHKPS 313
L + +
Sbjct: 135 PLKEQT 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCV--------------AKYGNKWIRTRTILD 410
+G L + IL A+NL+ + +D + RT+ +
Sbjct: 16 DLGNLIIHILQARNLVPRDN--NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 411 TLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYT 470
+L P WN+ + ++ + V + + +G+V I LS+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTL--EVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP 131
Query: 471 HYYPLL 476
+YPL
Sbjct: 132 RWYPLK 137
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.5 bits (203), Expect = 3e-19
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITK-HLEKNQNPVWNQIFAFSKERLQS 100
L V +V A+ L D ++DPYV++ + P WN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 101 SLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIM 159
L+ + DKD +DD VG ++ L V + + P Y + + KGEI
Sbjct: 72 E-LKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVKDEEY---KGEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.5 bits (177), Expect = 9e-16
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 362 RKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTIL-DTLAPRWNEQY 420
G GTLE+ ++SAK L D Y + ++ P WNE +
Sbjct: 5 SSGPHGTLEVVLVSAKGLEDADF--LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 421 TWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD-RIYTHYYPLLLLT 479
+ V + T + +FD +D +G+ I L + + I Y ++
Sbjct: 63 IFTVSEGTTELKAKIFDKDVGT------EDDAVGEATIPLEPVFVEGSIPPTAYNVV--- 113
Query: 480 PSGLKNNGELHLALRFT 496
+ GE+ +AL F
Sbjct: 114 -KDEEYKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 63.2 bits (153), Expect = 1e-12
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V + A+ L +D D V++ Q + + + P WNE +F SE
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 264 DLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313
+ + D+ +D+ +G IP+ V P +N+ K
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI----PPTAYNVVKDE 116
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.9 bits (204), Expect = 3e-19
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 22/137 (16%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-----TKHLEKNQNPVWNQIFAF--S 94
L V +++A+NL MDV G DPYV++ L T + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRV--------PPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+V + + + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 146 EDKKGDQTTKGEIMLAV 162
+ ++ + + MLAV
Sbjct: 146 QVEE-----EVDAMLAV 157
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 9e-09
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR----SVNPVWNE 252
+ P L V + EA++L D G D V+I L + + ++NP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 253 EHMFVAS--EPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ--RHETTKLPDPR--- 305
F + + ++VTV D + GK++ +G+ + + RH + L +PR
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI 139
Query: 306 --WFNLHKPS 313
W L
Sbjct: 140 AQWHTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.0 bits (90), Expect = 5e-04
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYT 421
G L + IL AKNL +M G L+D Y K +T +TL P +NE ++
Sbjct: 25 GKLTVVILEAKNLKKMDV--GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82
Query: 422 WDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
++V V + K+ IGKV + ++ + H+ +L
Sbjct: 83 FEVPFEQIQKVQVVVTVLDYDKIG---KNDAIGKVFVGYNSTGAE--LRHWSDML 132
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.7 bits (201), Expect = 6e-19
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAF--SKE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
L L + V D D K D +G + ++ V + +W L+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 3e-11
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L D G D V++ L + + V +++NPV+N
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 252 EEHMF--VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309
E+ F SE +++ V D R K +I+G +P+ V H T + W +L
Sbjct: 86 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE-----WRDL 140
Query: 310 H 310
Sbjct: 141 Q 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (141), Expect = 8e-11
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYC---VAKYGNKWIRTRTILDTLAPRWNEQYTWD 423
L +GI+ A L + G +D Y + K T+ TL P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91
Query: 424 VYDPC---TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
V + + V+D + K IG+ ++ ++T++ + + L
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.9 bits (191), Expect = 1e-17
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 1/121 (0%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L + V+ A+ PYVEV + T+ +P W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 102 LLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLA 161
V + D +G +LD+ + +L K T G++ +
Sbjct: 68 HFRVWSHQT-LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSIC 126
Query: 162 V 162
+
Sbjct: 127 L 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 2e-10
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 13/131 (9%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD 426
L++ ++SAK K+ G Y + +T +T +P+W + T V
Sbjct: 6 SQLQITVISAKLKENKKNWFG--PSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP 63
Query: 427 PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL---ETDRIYTHYYPLLLLTP-SG 482
+ V+ + + D +G + + ++ L L
Sbjct: 64 VSK-LHFRVWSHQTLK------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP 116
Query: 483 LKNNGELHLAL 493
+ G+L + L
Sbjct: 117 TETIGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 4e-09
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L++ V A+ P V + + Q + T + + +P W + + + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTN-SPKWKQPLTVIVTPVSK 66
Query: 264 DLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
V + D +LG + + + + L E +
Sbjct: 67 LHFRVWSHQTL--KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.4 bits (187), Expect = 5e-17
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGITKHLEKNQNPVWNQIFAF--S 94
L V ++KA NL MD++G DPYV+ L + K T + NP +N+ F +
Sbjct: 22 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV---------PLRVPPDSPLAPQWYR 144
E +++ L + V D D IG ++ +G + + P P+ W++
Sbjct: 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 140
Query: 145 LEDKK 149
L ++K
Sbjct: 141 LVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 7e-06
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHV----RSVNPVWNE 252
+ P L V + +A +L D D V+ L ++ R + ++NP +NE
Sbjct: 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 74
Query: 253 EHMF--VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNV---PQRHETTKLPDPR-- 305
+F + + V D G +E++G + + H L +PR
Sbjct: 75 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKP 134
Query: 306 ---WFNL 309
W L
Sbjct: 135 VEHWHQL 141
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.1 bits (181), Expect = 3e-16
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAF--S 94
L V +++ +L MD +G DP+V++ L K T+ +K NP +N+ F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP--------PDSPLAPQWYRL 145
L L+++V D D +D++G L +S R+ D + +W++L
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 135
Query: 146 ED 147
++
Sbjct: 136 QN 137
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.5 bits (125), Expect = 9e-09
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 13/129 (10%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVR----SVNPV 249
+ +S + L V + L D D V++ L + + ++NP
Sbjct: 7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 250 WNEEHMF--VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHE-------TTK 300
+NEE + S+ + + ++V D ++ +G + + +R +
Sbjct: 67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 126
Query: 301 LPDPRWFNL 309
RW L
Sbjct: 127 KKIERWHQL 135
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVA-----KYGNKWIRTRTILDTLAPRWNEQYT 421
G L +GI+ +L M + +D + +T+ TL P +NE++
Sbjct: 15 GGLIVGIIRCVHLAAMDANG--YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72
Query: 422 WDVYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476
+D+ ++ + Y G +D IG ++ +S H+Y L
Sbjct: 73 YDIKHSDLAKKSLDISVWDYDIGKSND----YIGGCQLGISAKGERL--KHWYECL 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (170), Expect = 8e-15
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSL-DPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAF---S 94
VN+ +AR LP MD DPY+++ + +K T+ L K +P +++ F F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 95 KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150
++Q L T+ D +DD +G V + LS + L E G
Sbjct: 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS------EGKMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 2e-08
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKY---GNKWIRTRTILDTLAPRWNEQYTWD 423
+ I A+ L M + +D Y ++TR + TL P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAM-DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 424 VYDP----CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLT 479
+ + + +D IG+V I LS +E ++
Sbjct: 81 GIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
Query: 480 PS 481
PS
Sbjct: 135 PS 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 2e-07
Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSDK-GRAPDACVRIQLGNQLRVTRPSHVRS--VNPVW 250
+ ++ + V + EA+ L D+ D +++ + + + + V ++P +
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 251 NEE---HMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
+E + ++ E + T+ R +D+I+G LIP+ +
Sbjct: 74 DETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM------LM 127
Query: 308 NLHKPS 313
N S
Sbjct: 128 NREIIS 133
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.2 bits (168), Expect = 1e-14
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVE---VKLGNYKGITKHLEKNQNPVWNQ--IFAFSKE 96
L V +++A +LP D +G DPYV+ + K TK K NP++N+ F+
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147
L L +V D D + D +G+V LD PPD PL W + +
Sbjct: 80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 7e-05
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVA---KYGNKWIRTRTILDTLAPRWNEQYTWD 423
L + IL A +L S +D Y K +T+ TL P +NE + +
Sbjct: 18 DQLVVRILQALDLPAKDS--NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75
Query: 424 VYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIY--THYYPLL 476
V + + S+ D IG+V + ++ + +L
Sbjct: 76 VPLAELAQRKLHFSVYDFDRFSRHD----LIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 63.0 bits (152), Expect = 2e-12
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 23/142 (16%)
Query: 35 LVELMHYLCVNVVKARNLPVMDVS-----------GSLDPYVEVKLGNYK-GITKHLEKN 82
+V L + + +A +L S LDPY+ + + + + G T +K
Sbjct: 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 83 QNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQW 142
+P W+ F + L V IG DDFV ++ ++ S W
Sbjct: 61 NSPAWHDEFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN---GSRHFEDW 116
Query: 143 YRLEDKKGDQTTKGEIMLAVWM 164
LE +G++ + + +
Sbjct: 117 IDLEP-------EGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 53.4 bits (127), Expect = 4e-09
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 27/142 (19%)
Query: 367 GTLELGILSAKNLMQM---------KSKDGKLTDAYCVAKYGN-KWIRTRTILDTLAPRW 416
G L++ I A +L L D Y + + +T T T +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 417 NEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL--ETDRIYTHYYP 474
++++ DV + I + VF + + D + I+ L R + +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 475 LLLLTPSGLKNNGELHLALRFT 496
L+ G++++ + +
Sbjct: 119 --------LEPEGKVYVIIDLS 132
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 49.5 bits (117), Expect = 1e-07
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 203 YLRVFVFEAQDLVPSDKGRA-----------PDACVRIQLGNQLRVTRPSHVRSVNPVWN 251
L++ + EA L P+ D + + + + + ++ +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 252 EEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311
+E + + + V + I G D+ + I + Q W +L
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPI--GYDDFVANCTIQFEELLQNGSRHF---EDWIDLEP 121
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.9 bits (152), Expect = 2e-12
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 42 LCVNVVKARNLPV--MDVSGSLDPYVE-----VKLGNYKGITKHLEKNQ-NPVWNQIFAF 93
L V ++ + LP + + +DP V V T + N NP W+ F F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ 152
+L+ V+D D K+DF+G+ ++ + L K GDQ
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW--------NSLKQGYRHVHLLSKNGDQ 117
Query: 153 TTKGEIMLAVWM 164
+ + + +
Sbjct: 118 HPSATLFVKISI 129
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.0 bits (142), Expect = 4e-11
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 204 LRVFVFEAQDL--VPSDKGRAPDACVRIQ-----LGNQLRVTRPSHVRSVNPVWNEEHMF 256
LRV + Q L V +K D V ++ R T NP W+ E F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 257 VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSL 314
+ P L+ VED K++ +G+ IP ++ Q + L +L
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATL 123
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 9e-06
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKY-----GNKWIRTRTI-LDTLAPRWNEQYT 421
L + I+S + L ++ + D + + +T I + PRW+ ++
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 422 WDVYDPCT-VITIGVFDNCYVNGSKDDAKDQRIGKVRIRL 460
++V P ++ V D + K+ IG+ I
Sbjct: 65 FEVTVPDLALVRFMVEDYDSSS------KNDFIGQSTIPW 98
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.3 bits (148), Expect = 5e-12
Identities = 15/123 (12%), Positives = 40/123 (32%), Gaps = 18/123 (14%)
Query: 47 VKARNL-PVMDVSGSLDPYVEVKLGNYKGI-----TKHLEKNQNPVWNQIFAFSKERLQS 100
+ L + + P+ VK+ + P W F +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV 68
Query: 101 SLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160
+++ + +D + V++ +S + R ++ A W L+ + ++++
Sbjct: 69 --IQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-------PQAKVLM 116
Query: 161 AVW 163
V
Sbjct: 117 CVQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 13/127 (10%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 374 LSAKNLMQMKSKDGKLTDAYCVAKYGNKWI-----RTRTILDTLAPRWNEQYTWDVYDPC 428
++ L ++++D +C K T+ P W + +
Sbjct: 9 FNSYELGSLQAEDDAS-QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEG 66
Query: 429 TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGE 488
VI I + ++D + +G + + + + L+ +
Sbjct: 67 RVIQIVLMRA-----AEDPMSEVTVGVSVLAERCKKNNGKAEFWLD--------LQPQAK 113
Query: 489 LHLALRF 495
+ + +++
Sbjct: 114 VLMCVQY 120
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 6e-11
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI----TKHLEKNQNPVWNQIFAFSKER 97
L V ++A + G D YV+ + N G T ++ + W +
Sbjct: 28 LFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 98 LQSSLLEVTVKDKD---IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149
+ +T+ + + G + L L + + QW L+
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 6e-06
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 14/120 (11%)
Query: 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWI----RTRTILDTLAPRWNEQYTW 422
L + L A D Y N+ +T L W E
Sbjct: 26 AELFVTRLEAVTS-----NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVL 80
Query: 423 DVYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPS 481
+ + T+ + S + G++R+ L + L PS
Sbjct: 81 PLAEEELPTATLTLTLRTCDRFS----RHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS 136
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (116), Expect = 1e-07
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 25/121 (20%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL------GNYKGITKHLEKNQ--NPVWNQ--IF 91
L + V+ + L V YVEV+L + TK NPVW +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 92 AFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151
+ + L V V ++ + F+G + ++ + L +
Sbjct: 59 FEKILMPELASLRVAVMEEG---NKFLGHRIIPINAL--------NSGYHHLCLHSESNM 107
Query: 152 Q 152
Sbjct: 108 P 108
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (89), Expect = 5e-04
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 21/122 (17%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL-------GNQLRVTRPSHVRSVNPVWNEEHMF 256
L + V Q L V ++L + R S+NPVW EE
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 257 --VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ--RHETTKLPDPRWFNLHKP 312
P + V V + ++ LG +IP+ + H L P
Sbjct: 59 FEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSGYHHLCLHSESNMP--LTMP 112
Query: 313 SL 314
+L
Sbjct: 113 AL 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.82 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.79 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.78 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.78 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.77 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.75 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.74 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.74 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.68 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.68 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.68 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.66 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.66 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.66 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.64 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.62 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.58 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.56 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.51 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.42 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.31 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.03 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.76 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.4e-22 Score=179.18 Aligned_cols=121 Identities=25% Similarity=0.450 Sum_probs=106.5
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCC
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVN 442 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~ 442 (782)
+++|.|+|+|++|+||++++.. |+ ||||++++++++++|+++++|.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~---g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFS---GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSS---SCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCCCCC---CCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 4579999999999999988643 66 9999999999999999999999999999999999988889999999998876
Q ss_pred CCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.|+|+++..+. .+|+.|......+ +..|+|+|++++.
T Consensus 80 ------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~i 124 (126)
T d2ep6a1 80 ------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 124 (126)
T ss_dssp ------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred ------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCC-ceeEEEEEEEEEE
Confidence 7899999999999998776 5899997655433 3359999999874
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.4e-22 Score=177.89 Aligned_cols=122 Identities=37% Similarity=0.535 Sum_probs=108.7
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~ 114 (782)
++++|.|.|+|++|++|+.+|..|.+||||++++++++++|+++++|.||+|||+|.|.+.+. ...|.|+|||++.. +
T Consensus 2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~ 80 (126)
T d2ep6a1 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP 80 (126)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred CCccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence 357899999999999999999999999999999999999999999999999999999999875 47899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
|++||++.++|.++..+ ..+|+.|....+.....|+|++++.+.
T Consensus 81 d~~lG~~~i~l~~l~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 81 PDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred cceEEEEEEEHHHCCCC-------CceEEEccccCCCCceeEEEEEEEEEE
Confidence 99999999999998654 358999987665554689999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=5.4e-20 Score=168.27 Aligned_cols=123 Identities=24% Similarity=0.355 Sum_probs=106.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccC-CCCCCeeccEEEEEeeCCCceEEEEEEeCCc
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLAPRWNEQYTWDVYDPCTVITIGVFDNCY 440 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~-~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~ 440 (782)
..+.|.|+|+|++|+||+..+.. |+ ||||+++++++..+|++++ ++.||+|||.|.|.+.++...|.|+|||++.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~---g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFL---NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSS---CSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCcEEEEEEEEEeeCCCCCCCC---CCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 45689999999999999987643 66 9999999999999999987 5899999999999999888889999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccC-CceEEEEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLET-DRIYTHYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
++ +|++||++.|+|.++.. +.....||++.. +.+..|+|+|+++|.+.
T Consensus 83 ~~------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CT------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred CC------CCCEEEEEEEEhHHhcccCCcCcEEEEecC----CCccCEEEEEEEEEEeC
Confidence 76 89999999999999754 455678999974 23446999999999763
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.79 E-value=5.6e-19 Score=161.00 Aligned_cols=119 Identities=19% Similarity=0.331 Sum_probs=101.4
Q ss_pred eeEEEEEEEEeecCCCCccC--------CCCCC-CcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSK--------DGKLT-DAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~--------~~~~~-dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v 435 (782)
.|.|+|+|++|+||++++.. ...+. ||||+|+++++. .+|+++.++.||.|||.|.|++.++ ..|.|+|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~V 83 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEEE
Confidence 58999999999999986421 23455 999999999865 6899999999999999999999764 7899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCC--ceEEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETD--RIYTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
||++.++ +|++||++.|+|+++..+ ...+.|++|.. +|+|++++++++++
T Consensus 84 ~d~~~~~------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--------~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEEE
T ss_pred EEecCCC------CceeEEEEEEEHHHhhhcCCcceeEEEeCCC--------CcEEEEEEEEEeCC
Confidence 9999876 899999999999999654 45789999963 59999999998764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.9e-19 Score=162.31 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=98.9
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC---EEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCc
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCY 440 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~ 440 (782)
.+.|+|+|++|+||+.....+..|+ ||||++.+++ ++.||+++.++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 3689999999999997543222356 9999999975 678999999999999999999999876 4589999999986
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
. +|++||++.|+|+++..++....||+|.. ...|+|++++++
T Consensus 82 ~-------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~------~~~g~i~~~l~~ 123 (126)
T d1rlwa_ 82 V-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp S-------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred C-------CCCeEEEEEEEHHHccCCCeEEEEEEccC------CCeEEEEEEEEE
Confidence 4 68999999999999999999999999963 224888887765
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=1.3e-19 Score=165.72 Aligned_cols=125 Identities=27% Similarity=0.421 Sum_probs=106.7
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeecccc-CCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLE-KNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~- 113 (782)
..+.|.|.|+|++|++|+..|..|++||||+++++++..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~ 84 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGT 84 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCT
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCC
Confidence 446799999999999999999999999999999999998999987 588999999999999864 46799999999998
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
+|++||++.|+|.++.... ....+|+.|... ++ ..|+|.+++.|.+..
T Consensus 85 ~d~~iG~~~i~L~~l~~~~----~~~~~~~~l~~~-~~--~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 85 EDDAVGEATIPLEPVFVEG----SIPPTAYNVVKD-EE--YKGEIWVALSFKPSG 132 (136)
T ss_dssp TTCCSEEEEEESHHHHHHS----EEEEEEEEEEET-TE--EEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEhHHhcccC----CcCcEEEEecCC-Cc--cCEEEEEEEEEEeCC
Confidence 8999999999999986431 235689998753 22 579999999997643
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.2e-19 Score=160.04 Aligned_cols=117 Identities=23% Similarity=0.394 Sum_probs=100.7
Q ss_pred eeEEEEEEEEeeCCCCC---CCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVM---DVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~ 112 (782)
.+.|+|+|++|+||+.. |..|.+||||++.+++ ++++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 36899999999999975 3468999999999976 67899999999999999999999987777889999999998
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 113 GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 113 ~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.+|++||++.++|+++..+. ....||+|.+.. .|+|.+++.+.
T Consensus 82 ~~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~~-----~g~i~~~l~~~ 124 (126)
T d1rlwa_ 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQVT-----EMVLEMSLEVA 124 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTTE-----EEEEEEEEECC
T ss_pred CCCCeEEEEEEEHHHccCCC-----eEEEEEEccCCC-----eEEEEEEEEEE
Confidence 89999999999999997653 366899997642 58888887654
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=1.1e-18 Score=158.40 Aligned_cols=101 Identities=23% Similarity=0.404 Sum_probs=88.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~ 438 (782)
+.|.|+|++|+||++++.. |. ||||++++ +..+.+|+++++|.||+|||.|.|.+..+ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~d~~---g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPN---GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCCSTT---SCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCCCCC---CCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 5899999999999988643 66 99999998 45679999999999999999999999764 45899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+.++ +|++||.+.|+|+++..+. .++||+|.+
T Consensus 92 d~~~------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 92 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp CSSS------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCC------CCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence 9876 8999999999999997654 689999975
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.7e-19 Score=159.32 Aligned_cols=123 Identities=19% Similarity=0.167 Sum_probs=99.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
+.|.|+|++|++|+..+..+.+||||+++++++.++|+++++|.||.|||.|.|.+.+ .+.|.|+|||++.+ +|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 6799999999999998888999999999999999999999999999999999999976 46899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.++|.++.............|+.|....+.....|+|.+.+..
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 9999999998653222112233455565554443467999887754
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.7e-18 Score=156.60 Aligned_cols=119 Identities=34% Similarity=0.440 Sum_probs=97.1
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
|...+++.|+. ..+.|.|+|++|+||+.++..|.+||||++++. .++++|+++++|.||+|||+|.|.+. +..
T Consensus 5 G~l~~sl~y~~--~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~ 82 (130)
T d1dqva1 5 GRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA 82 (130)
T ss_dssp CEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred EEEEEEEEEEC--CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcC
Confidence 54556666554 678999999999999999999999999999994 35789999999999999999999985 334
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
...|.|+|||++.+ +|++||++.|++.......+.+ ...|++|.+.
T Consensus 83 ~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~~ 129 (130)
T d1dqva1 83 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD---RPLWRDILEG 129 (130)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS---CCCCEECBCC
T ss_pred CCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCC---CcEEEecccC
Confidence 67899999999988 9999999999865444333222 4569999873
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2.2e-18 Score=158.80 Aligned_cols=117 Identities=32% Similarity=0.478 Sum_probs=101.3
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCeEeeeccccCCCCCccccEEEEEec--cC
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~kT~~i~~t~nP~Wne~f~f~~~--~~ 98 (782)
+|...+++.|+.. .+.|.|+|++|+||+.++..|.+||||++++ +.++.+|+++++|.||+|||+|.|.+. +.
T Consensus 20 ~G~l~~sl~y~~~--~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l 97 (143)
T d1rsya_ 20 LGKLQYSLDYDFQ--NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEETT--TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeCC--CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeecc
Confidence 5667788888774 4699999999999999999999999999999 346789999999999999999999875 33
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
....|.|+|||++.. ++++||++.|+|.++..+. ...+||+|+.
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s 142 (143)
T d1rsya_ 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred CCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence 567899999999988 8999999999999997643 3679999975
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.75 E-value=3.6e-18 Score=155.58 Aligned_cols=117 Identities=20% Similarity=0.351 Sum_probs=99.9
Q ss_pred ceeEEEEEEEEeeCCCCCC-----------CCCCCCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeEEE
Q 003975 38 LMHYLCVNVVKARNLPVMD-----------VSGSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEV 105 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d-----------~~g~~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i 105 (782)
-.|.|.|+|++|++|++.+ ..+.+||||+|+++++. .+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i 81 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEE
Confidence 3589999999999998753 35789999999999865 689999999999999999999976 468999
Q ss_pred EEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 106 TVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 106 ~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+|||++.+ +|++||.+.|+|+++...... ....|++|++ .|+|++.+.+.+
T Consensus 82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~---~~~~w~~L~p-------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 82 AVFHDAPIGYDDFVANCTIQFEELLQNGSR---HFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEEEecCCCCceeEEEEEEEHHHhhhcCCc---ceeEEEeCCC-------CcEEEEEEEEEe
Confidence 99999998 899999999999999876432 3568999974 588888887753
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=3.6e-18 Score=157.28 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=100.8
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---CCE
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---GNK 401 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~ 401 (782)
...|+|++++.+.. ..+.|+|+|++|+||++++. .|. ||||+|.+ +.+
T Consensus 18 ~~~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~~~---~g~~dpyV~v~l~~~~~~ 69 (143)
T d1rsya_ 18 EKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDM---GGTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEETTCCS
T ss_pred hcceEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCCCC---CCCCCeEEEEEEcCCCCe
Confidence 44699999887632 23699999999999998764 366 99999998 456
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
..+|+++++|.||.|||.|.|++... ...|.|+|||++.++ ++++||.+.|+|+++..++...+||+|+.
T Consensus 70 ~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC------CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 79999999999999999999988642 568999999999876 88999999999999998888899999974
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=4.2e-18 Score=154.61 Aligned_cols=104 Identities=34% Similarity=0.552 Sum_probs=91.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEeeeccccCCCCCccccEEEEEeccC-CCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFSKERL-QSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~kT~~i~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~d~ 112 (782)
.+.|.|+|++|+||+.+|..|.+||||++++ +..+++|+++.+|.||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 3789999999999999999999999999999 34578999999999999999999998643 24579999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
. +|++||++.|++.++..+ ...+||+|.+.
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~------~~~~W~~L~~~ 124 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA------GVDGWFKLLSQ 124 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC------CEEEEEECBCH
T ss_pred CCCCcEeEEEEEeHHHcCCC------CCCeEEECCCC
Confidence 8 899999999999998653 15689999774
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.9e-19 Score=162.64 Aligned_cols=117 Identities=38% Similarity=0.565 Sum_probs=99.1
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC--------------eEeeeccccCCCCCcccc
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN--------------YKGITKHLEKNQNPVWNQ 89 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--------------~~~kT~~i~~t~nP~Wne 89 (782)
.|..++++.|+ .+.|.|+|++|+||+.+|..|.+||||++++.+ +++||+++++|.||.|||
T Consensus 6 ~G~l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T d1rh8a_ 6 TGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred ceEEEEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence 35667887775 478999999999999999999999999999832 236899999999999999
Q ss_pred EEEEEec---cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 90 IFAFSKE---RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 90 ~f~f~~~---~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+|.|... ++....|.|+|||++.+ +|++||++.|+|.++.... ...+||+|+++.
T Consensus 82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC-----CceEEEECcCcC
Confidence 9999742 34567899999999988 8999999999999997653 267999999865
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.3e-17 Score=151.12 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=93.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
+.|+|+|++|++++..+. +.+.||||+|.++++.+||+++++|.||.|||.|.|++.+ ++.|.|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~---- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKN--WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK---- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS----
T ss_pred eEEEEEEEEeECCCcCCC--CCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC----
Confidence 689999999999997653 2233999999999999999999999999999999999864 579999999999887
Q ss_pred CCCCCccEEEEEEcccccC---Cce--EEEEEeeeecCCCCCCcCcEEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLET---DRI--YTHYYPLLLLTPSGLKNNGELHLALR 494 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~---~~~--~~~w~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.|+|+++.. +.. ...|+++... .++....|+|.+.+.
T Consensus 79 --~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 79 --SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEPTETIGDLSICLD 128 (133)
T ss_dssp --CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SCTTSEEEEEEEEEE
T ss_pred --CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-CCCceEEEEEEEEEe
Confidence 89999999999999732 322 3444444432 234455799888765
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2.2e-17 Score=149.38 Aligned_cols=117 Identities=24% Similarity=0.409 Sum_probs=95.8
Q ss_pred eEEEEEEEEeeCCCCC--CCCCCCCcEEEEEEC-----CeEeeeccccCC-CCCccccEEEEEeccCCCCeEEEEEEeCC
Q 003975 40 HYLCVNVVKARNLPVM--DVSGSLDPYVEVKLG-----NYKGITKHLEKN-QNPVWNQIFAFSKERLQSSLLEVTVKDKD 111 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~--d~~g~~dPyv~v~~~-----~~~~kT~~i~~t-~nP~Wne~f~f~~~~~~~~~L~i~V~d~d 111 (782)
..|.|+|++|++|+.. +.+|.+||||+|++. .++.+|++++++ .||.|||+|.|.+.......|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 557889999999983 367899988766 69999999999987666678999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 112 IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 112 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
.. +|++||++.++|..+..+ .+|++|.+..|.....|+|.+.+.+
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISI 129 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEE
Confidence 98 899999999999998643 3699999988876456788887765
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.7e-17 Score=148.21 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=92.4
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
+.|.|+|.+|++|.+++ + ||||++++++.+.+|.+++ +.||.|||.|.|++.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~~------~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE------KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCGG------GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred eEEEEEEEEEECCCCCC------CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence 58999999999998754 4 9999999999999999886 5599999999999999988999999999864
Q ss_pred CCCCCCccEEEEEEcccccC--CceEEEEEeeeecCC--CCC------CcCcEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLET--DRIYTHYYPLLLLTP--SGL------KNNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~--~g~------~~~G~i~l~~~~ 495 (782)
+|++||++.|+|+++.. .....+||+|..... .|. ...+.|.++++|
T Consensus 71 ---~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 ---WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp ---CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred ---CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 68999999999999853 345678999965321 111 124567777665
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.1e-17 Score=149.36 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=89.4
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccC
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLG---NQLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIR 275 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~ 275 (782)
.+.|.|+|++|+||+.++.++.+||||++++. .++++|+++++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~ 95 (130)
T d1dqva1 17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 95 (130)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC
Confidence 35699999999999999999999999999994 46789999886 99999999999988543 35679999999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
.+++++||++.|++.....+ .......|++|.+.
T Consensus 96 ~~~d~~iG~~~i~~~~~l~~---~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 96 FSRHDLIGQVVLDNLLELAE---QPPDRPLWRDILEG 129 (130)
T ss_dssp SSCCCEEEEEECCCTTGGGS---SCSSCCCCEECBCC
T ss_pred CCCCceEEEEEECchhhhhc---CCCCCcEEEecccC
Confidence 99999999999987554332 22335579999764
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=4.3e-17 Score=147.42 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=90.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCC-CCCeeccEEEEEeeCC-CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDT-LAPRWNEQYTWDVYDP-CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t-~~P~wne~~~f~v~~~-~~~l~i~v~d~ 438 (782)
..|+|+|++|+||+..+. +..++ ||||+|++ +.+..||++++++ +||.|||+|+|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 379999999999986543 24456 99999998 3478999988765 7999999999998765 45899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|.++ +|++||++.|+|+.+..| .+|++|.+..... -..++|.+++.+
T Consensus 83 d~~~------~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~-~~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS------KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQ-HPSATLFVKISI 129 (131)
T ss_dssp CTTT------CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCE-EEEEEEEEEEEE
T ss_pred cCCC------CCcEEEEEEEEEeccCCC---CEEEECCCCCcCC-CCCCEEEEEEEE
Confidence 9876 899999999999999876 3699997533211 124677777665
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.1e-17 Score=147.63 Aligned_cols=103 Identities=30% Similarity=0.445 Sum_probs=88.1
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|+.|.|+|++|++|.+.| .+||||++++++++.+|++++ +.||+|||+|.|.+.+. ...|.|+|||++..+|++|
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence 578999999999999876 679999999999999999886 56999999999999876 5789999999988899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|++.|+|+++..... ....+||+|..+.
T Consensus 76 G~~~I~L~~l~~~~~---~~~~~W~~L~~~~ 103 (128)
T d2cjta1 76 GTVWIPLRTIRQSNE---EGPGEWLTLDSQA 103 (128)
T ss_dssp EEEEEEGGGSCBCSS---CCCCEEEECBC--
T ss_pred EEEEEEehhhccCCC---CCCCeeEECCccc
Confidence 999999999975432 1356899997643
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.1e-18 Score=158.86 Aligned_cols=115 Identities=22% Similarity=0.339 Sum_probs=97.3
Q ss_pred ccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----
Q 003975 327 FSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN----- 400 (782)
Q Consensus 327 ~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~----- 400 (782)
..|+|++++.+. .|.|.|+|++|+||++++.. |. ||||++++.+
T Consensus 5 ~~G~l~lsl~y~---------------------------~~~L~V~V~~A~~L~~~d~~---g~~DpyV~v~l~~~~~~~ 54 (142)
T d1rh8a_ 5 ITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNN---GYSDPFVKVYLLPGRGQV 54 (142)
T ss_dssp CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSS---SCSCCEEEEEETTSSCCC
T ss_pred cceEEEEEEEEe---------------------------CCEEEEEEEEeECCCCcCCC---CCCCcCEEEEEecCcccc
Confidence 459999998762 26899999999999988643 66 9999999832
Q ss_pred ---------EEEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCc
Q 003975 401 ---------KWIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 401 ---------~~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
++.||++++++.||.|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|+++..+.
T Consensus 55 ~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~------~~~~lG~~~i~L~~l~~~~ 128 (142)
T d1rh8a_ 55 MVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLD 128 (142)
T ss_dssp EECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSS------CEEEEEEEEEETTSCGGGT
T ss_pred cccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCC------CCeeeEEEEEEhHHcCCCC
Confidence 23689999999999999999998543 3568999999999876 8899999999999998888
Q ss_pred eEEEEEeeee
Q 003975 468 IYTHYYPLLL 477 (782)
Q Consensus 468 ~~~~w~~L~~ 477 (782)
...+||+|..
T Consensus 129 ~~~~W~~L~~ 138 (142)
T d1rh8a_ 129 NTPRWYPLKE 138 (142)
T ss_dssp TCCEEEECBC
T ss_pred CceEEEECcC
Confidence 8899999986
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.7e-17 Score=146.71 Aligned_cols=103 Identities=25% Similarity=0.430 Sum_probs=80.4
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v 435 (782)
.+.|.|+|++|+||++.+. .+. ||||+|.+ .....||++++++.||.|||.|.|....+ ...|.|+|
T Consensus 13 ~~~L~V~V~~a~~L~~~~~---~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v 89 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSRED---GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 89 (125)
T ss_dssp TTEEEEEEEEEESCCCCTT---SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEeECCCCcCC---CCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence 4699999999999998753 355 99999998 23568999999999999999999974322 34799999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||.+.++ ...+++||++.|+|+++..... .+||+|+
T Consensus 90 ~d~~~~~----~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 90 WDQARVR----EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEC-----------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EECCCCC----CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9998764 2356799999999999976553 6899984
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.6e-17 Score=146.80 Aligned_cols=112 Identities=29% Similarity=0.548 Sum_probs=89.7
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCccccEEEEE-ec--cC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQIFAFS-KE--RL 98 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne~f~f~-~~--~~ 98 (782)
..+++.|+ +..+.|.|+|++|+||+..+..+.+||||+|.+. ..+++|++++++.||+|||+|.|. +. +.
T Consensus 3 l~l~l~y~--~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l 80 (125)
T d2bwqa1 3 LSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 80 (125)
T ss_dssp EEEEEEEE--TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred EEEEEEEE--CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence 34555554 4567999999999999999999999999999992 246899999999999999999996 33 33
Q ss_pred CCCeEEEEEEeCCCC---CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 99 QSSLLEVTVKDKDIG---KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~---~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.. ++++||++.|+|+++.... ..+||+|+
T Consensus 81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~ 125 (125)
T d2bwqa1 81 RERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125 (125)
T ss_dssp GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence 456899999999975 5679999999999997642 35899985
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-16 Score=144.70 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=98.7
Q ss_pred cccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC----
Q 003975 326 KFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---- 400 (782)
Q Consensus 326 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---- 400 (782)
...++|+++++++. ..+.|.|+|++|+||+. .+. ||||++.+.+
T Consensus 10 ~~~~~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~ 58 (138)
T d1wfma_ 10 NQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEE
T ss_pred CcCCEEEEEEEECC-------------------------CCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCc
Confidence 44589999998733 34699999999999963 244 9999999932
Q ss_pred EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 401 KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
...+|++++++.||+|||.|.|++... ...|.|+|||++.++ ++++||++.|+|+++.......+|++|..
T Consensus 59 ~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred cceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccc------cceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 458999999999999999999998643 568999999999876 89999999999999987777899999986
Q ss_pred cCC
Q 003975 478 LTP 480 (782)
Q Consensus 478 ~~~ 480 (782)
..+
T Consensus 133 ~~~ 135 (138)
T d1wfma_ 133 SGP 135 (138)
T ss_dssp CSC
T ss_pred CCC
Confidence 443
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=2.4e-16 Score=143.94 Aligned_cols=102 Identities=24% Similarity=0.347 Sum_probs=86.0
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-----CCE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-----GNK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~ 401 (782)
+|+|.+++++. +..|.|.|.|++|+||+..+.. +. ||||++++ ...
T Consensus 1 rG~l~l~l~Y~-------------------------~~~~~L~V~v~~a~nL~~~~~~---~~~dpyv~v~l~~~~~~~~ 52 (137)
T d2cm5a1 1 RGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAMDAN---GYSDPFVKLWLKPDMGKKA 52 (137)
T ss_dssp CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCSTT---SCCCEEEEEEEETC---CC
T ss_pred CcEEEEEEEEE-------------------------CCCCEEEEEEEEEECCCCCCCC---CCcCeEEEEEEEcCCccce
Confidence 48999999873 3457999999999999987532 45 99999998 234
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
+.||+++++|.||.|||.|.|++... ...|.|.|||.+.++ +|++||++.|++..+
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~------~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 53 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK------SNDYIGGCQLGISAK 111 (137)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCC
T ss_pred eecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCC------CCCEEEEEEeCcccc
Confidence 68999999999999999999998743 458999999999876 899999999999875
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.2e-16 Score=144.05 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN----YKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
+.++.+..+|....+.|.|+|++|++|+ ..|.+||||++.+.+ ..++|++++++.||+|||+|.|.+. ++.
T Consensus 12 ~~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~ 88 (138)
T d1wfma_ 12 APKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP 88 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSST
T ss_pred CCEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhcc
Confidence 3445555555556789999999999995 357899999999953 3578999999999999999999985 345
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g 150 (782)
...|.|+|||++.+ ++++||++.|+|.++.... ...+|++|+....
T Consensus 89 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~W~~L~~~~~ 135 (138)
T d1wfma_ 89 TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSGP 135 (138)
T ss_dssp TCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCSC
T ss_pred ceEEEEEEeeecccccceeeeEEEEEhHHccCCC-----CceEeEeCCCCCC
Confidence 78899999999988 8999999999999986543 2678999988543
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.8e-16 Score=144.76 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=90.9
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CC---E
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GN---K 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~---~ 401 (782)
+|+|++++++. +..+.|.|.|++|+||+.++.. +. ||||+|.+ ++ .
T Consensus 1 rG~l~~sl~Y~-------------------------~~~~~L~V~v~~a~~L~~~~~~---~~~dpyvkv~l~~~~~~~~ 52 (138)
T d1w15a_ 1 RGELLVSLCYQ-------------------------STTNTLTVVVLKARHLPKSDVS---GLSDPYVKVNLYHAKKRIS 52 (138)
T ss_dssp CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEEc-------------------------CCCCEEEEEEEEeECCCCCCCC---CCcCEEEEEEEeCCcccCc
Confidence 48899999873 3457999999999999987643 56 99999998 33 3
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc------------cCC
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL------------ETD 466 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~ 466 (782)
..||++++++.||.|||.|.|.+... ...|.|+|||.+.++ ++++||++.|++... .++
T Consensus 53 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~------~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~ 126 (138)
T d1w15a_ 53 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS------RNEVIGRLVLGATAEGSGGGHWKEICDFPR 126 (138)
T ss_dssp EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTS------CCEEEEEEEESTTCCSHHHHHHHHHHHSTT
T ss_pred cccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCC------CCCEEEEEEEcchhCCchHHHHHHHHhCCC
Confidence 47899999999999999999998643 347999999999876 899999999999863 235
Q ss_pred ceEEEEEeeee
Q 003975 467 RIYTHYYPLLL 477 (782)
Q Consensus 467 ~~~~~w~~L~~ 477 (782)
+.+.+||+|..
T Consensus 127 k~i~~Wh~L~~ 137 (138)
T d1w15a_ 127 RQIAKWHMLCD 137 (138)
T ss_dssp CCEEEEEECBC
T ss_pred CeeeECeEccc
Confidence 66778888863
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.5e-16 Score=142.69 Aligned_cols=107 Identities=29% Similarity=0.431 Sum_probs=90.4
Q ss_pred ccCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCC-CCCcEEEEEE---CCeEeeeccccCCCCCccccEEEEE-ec-
Q 003975 23 YRGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSG-SLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFS-KE- 96 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g-~~dPyv~v~~---~~~~~kT~~i~~t~nP~Wne~f~f~-~~- 96 (782)
.+|...+++.|+- ..+.|.|+|++|+||+.++..+ .+||||++.+ +.++++|++++++.||.|||+|.|. +.
T Consensus 7 ~~G~l~~sl~Y~~--~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 84 (138)
T d1ugka_ 7 GLGTLFFSLEYNF--ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84 (138)
T ss_dssp CCCEEEEEEEEEG--GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred CCEEEEEEEEEeC--CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCH
Confidence 3577778888876 4569999999999999987665 5899999999 3467899999999999999999996 33
Q ss_pred -cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCC
Q 003975 97 -RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 97 -~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~ 131 (782)
+.....|+|+|||++.+ +|++||++.|+|.++...
T Consensus 85 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred HHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 23456899999999988 899999999999998654
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.4e-16 Score=140.49 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=94.3
Q ss_pred ccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---CCEE
Q 003975 327 FSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---GNKW 402 (782)
Q Consensus 327 ~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~ 402 (782)
..|+|.+++++.. ..+.|.|+|++|+||+.++.. .+. ||||++.+ +.+.
T Consensus 7 ~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~d~~--~~~~dpyV~v~l~~~~~~~ 59 (138)
T d1ugka_ 7 GLGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCSE
T ss_pred CCEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCC--CCccceEEEEEEcCCCCEe
Confidence 3599999998733 346999999999999987643 344 99999999 4567
Q ss_pred EeecccCCCCCCeeccEEEEEeeCC----CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccC-CceEEEEEeee
Q 003975 403 IRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET-DRIYTHYYPLL 476 (782)
Q Consensus 403 ~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L~ 476 (782)
+||++++++.||.|||.|.|..... ...|+|+|||.+.++ +|++||.+.|+|+++.. ......|..+.
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~------~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC------CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 9999999999999999999974332 348999999999876 89999999999999853 34455666654
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=6.5e-16 Score=144.24 Aligned_cols=119 Identities=25% Similarity=0.295 Sum_probs=97.9
Q ss_pred ccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C-
Q 003975 325 EKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N- 400 (782)
Q Consensus 325 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~- 400 (782)
.+..|+|.+++++. +..|.|.|.|++|+||+..+.. +. ||||++++. +
T Consensus 8 ~~~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~~~~---~~~dpyV~v~l~~~~~ 59 (157)
T d1uowa_ 8 LEKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKMDVG---GLSDPYVKIHLMQNGK 59 (157)
T ss_dssp GGCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCSTT---SCCCEEEEEEEEETTE
T ss_pred ceeeeEEEEEEEEc-------------------------CCCCEEEEEEEEEEEcccccCC---CCCCeeEEEEEecCCc
Confidence 45579999999873 3357999999999999987532 55 999999983 3
Q ss_pred --EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc------------
Q 003975 401 --KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL------------ 463 (782)
Q Consensus 401 --~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------ 463 (782)
...+|++++++.||+|||.|.|++... ...|.|+|||.+.++ ++++||++.|++...
T Consensus 60 ~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~------~~~~iG~~~i~l~~~~~~~~hW~~~~~ 133 (157)
T d1uowa_ 60 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLA 133 (157)
T ss_dssp EEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred cccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCC------CCceeEEEEEecccCChhHHHHHHHHh
Confidence 246899999999999999999998754 358999999999876 899999999999763
Q ss_pred cCCceEEEEEeeee
Q 003975 464 ETDRIYTHYYPLLL 477 (782)
Q Consensus 464 ~~~~~~~~w~~L~~ 477 (782)
..++.+.+||+|..
T Consensus 134 ~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 134 NPRRPIAQWHTLQV 147 (157)
T ss_dssp STTCCEEEEEECBC
T ss_pred CCCCceeEeEeCCC
Confidence 33566789999975
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=4.9e-16 Score=141.83 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=80.5
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeeeecccCCCCCCcccceeEEEecCCC--CCeEEEEEEEcc
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GN---QLRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~ 274 (782)
+.|.|+|++|+||+..+.++.+||||++++ ++ .+.+|+++++ +.||.|||+|.|.+.... ...|.|+|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~ 93 (138)
T d1w15a_ 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDSE 93 (138)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence 459999999999999998899999999999 32 3467888886 999999999999875433 447999999999
Q ss_pred CCCCCceeEEEEEeCCCccccc-------CCCCCCCCceEEccC
Q 003975 275 RPGKDEILGRELIPVRNVPQRH-------ETTKLPDPRWFNLHK 311 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~-------~~~~~~~~~w~~L~~ 311 (782)
..+++++||++.+++....... ...+....+||.|.+
T Consensus 94 ~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~ 137 (138)
T d1w15a_ 94 RGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137 (138)
T ss_dssp TTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence 9999999999999998643210 012334567777753
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=5.7e-16 Score=141.34 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=79.5
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEcc
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLG-----NQLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~ 274 (782)
+.|.|+|++|+||+..+..+.+||||++++. ..+++|+++++ +.||.|||.|.|.+... ....|.|.|||++
T Consensus 15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~ 93 (137)
T d2cm5a1 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 93 (137)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence 4699999999999999988999999999982 25678998886 99999999999998543 3558999999999
Q ss_pred CCCCCceeEEEEEeCCCcc
Q 003975 275 RPGKDEILGRELIPVRNVP 293 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~ 293 (782)
..+++++||++.+++..+.
T Consensus 94 ~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 94 IGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp SSSCCEEEEEEEEETTCCH
T ss_pred CCCCCCEEEEEEeCccccC
Confidence 9999999999999998753
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.5e-15 Score=141.67 Aligned_cols=126 Identities=23% Similarity=0.341 Sum_probs=101.1
Q ss_pred ccceEEEEEEEecccCCccccccccCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC
Q 003975 153 TTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLG 232 (782)
Q Consensus 153 ~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~ 232 (782)
...|+|.+++.|.+ ..+.|.|+|++|+||+..+..+.+||||++++.
T Consensus 9 ~~~G~l~~sl~Y~~---------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~ 55 (157)
T d1uowa_ 9 EKLGDICFSLRYVP---------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (157)
T ss_dssp GCCCEEEEEEEEET---------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred eeeeEEEEEEEEcC---------------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEe
Confidence 35899999998863 234699999999999999999999999999994
Q ss_pred C-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccCCCCCceeEEEEEeCCCccccc-------CC
Q 003975 233 N-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH-------ET 298 (782)
Q Consensus 233 ~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~-------~~ 298 (782)
. ..++|+++++ +.||+|||+|.|.+... ....|.|+|||++..+++++||++.|++....... ..
T Consensus 56 ~~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~ 134 (157)
T d1uowa_ 56 QNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 134 (157)
T ss_dssp ETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHS
T ss_pred cCCccccceecccccC-CCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhC
Confidence 3 3457888875 99999999999998654 34589999999999999999999999997642110 02
Q ss_pred CCCCCCceEEccCC
Q 003975 299 TKLPDPRWFNLHKP 312 (782)
Q Consensus 299 ~~~~~~~w~~L~~~ 312 (782)
.+....+||.|+.+
T Consensus 135 ~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 135 PRRPIAQWHTLQVE 148 (157)
T ss_dssp TTCCEEEEEECBCH
T ss_pred CCCceeEeEeCCCC
Confidence 34456799999865
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.8e-15 Score=134.39 Aligned_cols=113 Identities=13% Similarity=0.248 Sum_probs=88.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKD 115 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d 115 (782)
.|+|+|....--+....+|.+||||+|++++. .++|+++++|+||+|||+|.|.+.+ ...|.|.|||+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d 78 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---E 78 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---T
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---c
Confidence 35555555533334555799999999999652 4679999999999999999999976 468999999985 7
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+++|.+.+.+.++.......+...+.|++|+. .|+|++++.|.
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f 121 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYF 121 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEe
Confidence 89999999999996533223345778999963 69999998775
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=1.2e-15 Score=140.55 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=98.6
Q ss_pred cceEEEEEEEecccCCccccccccCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 003975 154 TKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN 233 (782)
Q Consensus 154 ~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~ 233 (782)
..|+|+++++|.+ ..+.|.|+|++|+||+..+..+.+||||++++..
T Consensus 5 ~~G~l~~sl~Y~~---------------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~ 51 (145)
T d1dqva2 5 DLGELNFSLCYLP---------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLIS 51 (145)
T ss_dssp CCCEEEEEEEEET---------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCT
T ss_pred cceEEEEEEEEcC---------------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEcc
Confidence 4799999998873 3356999999999999999889999999999954
Q ss_pred -----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccCCCCCceeEEEEEeCCCccccc--------CC
Q 003975 234 -----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRH--------ET 298 (782)
Q Consensus 234 -----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~--------~~ 298 (782)
.+++|+++++ +.||.|||.|.|.+... ....|.|.|||++..+++++||++.|+++.+.... ..
T Consensus 52 ~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~ 130 (145)
T d1dqva2 52 EGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLAN 130 (145)
T ss_dssp TCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSS
T ss_pred CCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhC
Confidence 2467888886 99999999999987532 35679999999999999999999999998763210 02
Q ss_pred CCCCCCceEEccC
Q 003975 299 TKLPDPRWFNLHK 311 (782)
Q Consensus 299 ~~~~~~~w~~L~~ 311 (782)
.+....+|+.|..
T Consensus 131 p~~~i~~Wh~L~~ 143 (145)
T d1dqva2 131 PRKPVEHWHQLVE 143 (145)
T ss_dssp SSSCSCSCCCCBB
T ss_pred CCCeeeEeEECCC
Confidence 3344566776653
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=5.9e-16 Score=142.59 Aligned_cols=103 Identities=26% Similarity=0.359 Sum_probs=88.7
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~-- 96 (782)
+|...+++.|+ +..|.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 6 ~G~l~~sl~Y~--~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~ 83 (145)
T d1dqva2 6 LGELNFSLCYL--PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 83 (145)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred ceEEEEEEEEc--CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence 46566776666 46689999999999999999899999999999964 2578999999999999999999875
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQV 128 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l 128 (782)
+.....|.|.|||++.. ++++||++.|++..+
T Consensus 84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred hcCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence 34567899999999988 899999999999776
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=3.3e-14 Score=126.07 Aligned_cols=104 Identities=13% Similarity=0.296 Sum_probs=84.2
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-----EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-----WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYV 441 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-----~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~ 441 (782)
++.|.++.+..++.. .+. ||||+|++++. ..+|+++++|+||+|||+|.|.|.+ ...|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~~-----~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d-- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQAE-----DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA-- 77 (123)
T ss_dssp EEEEEEEECCTTCCC-----CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET--
T ss_pred EEEEEEeecccCCCC-----CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc--
Confidence 455666666665542 345 99999999543 3678899999999999999999976 478999999963
Q ss_pred CCCCCCCCCCccEEEEEEccccc-----CCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLE-----TDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|+++|.+.|++..+. .+...+.|++|.. .|+|+++++|
T Consensus 78 --------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~--------~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 --------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP--------QAKVLMCVQY 120 (123)
T ss_dssp --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--------SCEEEEEEEE
T ss_pred --------ccccCccEEehhheeeccccCCCcccEEEeCCC--------CEEEEEEEEE
Confidence 689999999999983 4667899999963 6999999987
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=9.3e-13 Score=116.24 Aligned_cols=109 Identities=23% Similarity=0.305 Sum_probs=83.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeecc--ccCCCCCccccE-EEE-EeccCCCCeEEEEEEeC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKH--LEKNQNPVWNQI-FAF-SKERLQSSLLEVTVKDK 110 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~--i~~t~nP~Wne~-f~f-~~~~~~~~~L~i~V~d~ 110 (782)
.|.|+|++|++|+.+ ++||||+|++-| .+.+|++ ..++.||+|||+ |.| .+...+...|+|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999864 479999999822 3344444 467799999976 444 34444556899999998
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 111 DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 111 d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+ |++||++.++|..+..+ -+|.+|.+..|+....+.|.+.+.+
T Consensus 78 d---~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C---CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 5 79999999999999764 3789999988886556777776644
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9.7e-12 Score=109.55 Aligned_cols=108 Identities=19% Similarity=0.357 Sum_probs=76.7
Q ss_pred EEEEEEEEeecCCCCccCCCCCCCcEEEEEE-C-----CEEEeeccc--CCCCCCeeccE-EEE-EeeCC-CceEEEEEE
Q 003975 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKY-G-----NKWIRTRTI--LDTLAPRWNEQ-YTW-DVYDP-CTVITIGVF 436 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~-~-----~~~~rT~~~--~~t~~P~wne~-~~f-~v~~~-~~~l~i~v~ 436 (782)
.|+|+|++|++|+.. ..||||+|++ | .+..+|+++ .+++||.|||. |.| .+..+ ...|.|.||
T Consensus 2 tl~V~Visaq~L~~~------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~ 75 (122)
T d2zkmx2 2 TLSITVISGQFLSER------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 75 (122)
T ss_dssp EEEEEEEEEESCCSS------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred EEEEEEEEeeCCCCC------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEE
Confidence 689999999999853 1399999998 2 234555553 67899999986 444 34444 348999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|++ |++||++.|||+.+..|. +|+||.+..... -..+.|.+.+++
T Consensus 76 D~d----------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~-l~~~~L~v~i~~ 120 (122)
T d2zkmx2 76 EEG----------NKFLGHRIIPINALNSGY---HHLCLHSESNMP-LTMPALFIFLEM 120 (122)
T ss_dssp ETT----------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCE-EEEEEEEEEEEE
T ss_pred CCC----------CCEEEEEEEEcccCcCCc---eEEEccCCCcCC-CCCceEEEEEEE
Confidence 973 789999999999998874 788997633211 123455555543
|