Citrus Sinensis ID: 004005

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------78
Protein Sequence
MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEcccccccccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEEEccEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHcHHHHcccccccccccEEEEEccccccccccccEEEEEEEEcccEEEEccccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHEEEEEEcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHcccccccEEEcccccccccccccccccccccccccHHccHHHHHHHHHcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHHccccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccHHHcccHHHHHccccccccccccccHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msscevngvvrsqgfphfkslehfdmdFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYytlgtnssgtldqGLCSLVHLQELYIAsndlrgslpwcmanmtslrildvssnqltgsisssplvhLTSIEELmlsnnyfqipisleplfnysrlkifnaeNNEIKAEITeshsliapkfqlntlslssnygdgfifpkflyhqhdleyvdlshikmngefpnwllenntkLETLFLVndslagpfrlpihshkrlrqldvsnnnirghipvkigdvlpsLYVFnnsmnaldgsipssfgnmkFLQILDlsnnhltgeipehlavgCVNLQFLALSNnnlqghlfsrnfnltnLQWLQLegnrfvgeipqslskcssleglylnnnsllgkiprwlgnltrlqyiimpnnhlegpipvefcqldslqildisdnnisgslpscfhplsikqvhLSKNmlhgqlkrgtffncsslvtldlsynrlngsipdwvDGLSQLSHLILGHNNLEGEVSVQLCELNQlqlldlsnnnlhgpippcfdnttlhesysnssspdeqFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSgldlscnklighippqignltRIQTLNlshnnltgsipstfsnlkhvesldlsnnklngkiphqlVELKTLEVFSVAYNNlsgeipewKAQFATfnessyegntflcglplpicrspatmpeasigneqddnlidmdSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Flexible Loop (DISEMBL)
MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Low Complexity Region (SEG)
MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPslkylslsyyTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVqlcelnqlqlldlsnnnlHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Disordered region (IsUnstruct)
********VVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT**************FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSP*************DNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI*
Disordered Region (DISOPRED)
MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES*********QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG****************************DSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Disordered Region (DISEMBL)
MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH*********DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Disordered Region (DISPRO)
**SCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	779	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.821	0.511	0.316	2e-70
Q9FL28	1173	LRR receptor-like serine/	no	no	0.774	0.514	0.321	2e-64
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.865	0.539	0.303	4e-64
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.867	0.579	0.287	2e-63
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.658	0.448	0.326	5e-62
Q9LHP4	1141	Receptor-like protein kin	no	no	0.770	0.525	0.332	3e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.894	0.598	0.311	4e-59
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.752	0.491	0.309	7e-59
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.872	0.617	0.302	7e-58
P93194	1109	Receptor-like protein kin	N/A	no	0.703	0.494	0.310	1e-57

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  267 bits (683), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 224/708 (31%), Positives = 352/708 (49%), Gaps = 68/708 (9%)

Query: 70  SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
           +G +      LV LQ L +  N+L G +P  + N TSL +   + N+L GS+ +  L  L
Sbjct: 181 TGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRL 239

Query: 130 TSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTL 187
            +++ L L +N F  +IP  L  L +   ++  N   N+++  I +  + +A    L TL
Sbjct: 240 KNLQTLNLGDNSFSGEIPSQLGDLVS---IQYLNLIGNQLQGLIPKRLTELA---NLQTL 293

Query: 188 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP 247
            LSSN   G I  +F +  + LE++ L+  +++G  P  +  NNT L+ LFL    L+G 
Sbjct: 294 DLSSNNLTGVIHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGE 352

Query: 248 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIPSSFGNMK 305
               I + + L+ LD+SNN + G IP  +  +  L +LY+ NNS   L+G++ SS  N+ 
Sbjct: 353 IPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNS---LEGTLSSSISNLT 409

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 365
            LQ   L +N+L G++P+ +      L+ + L  N   G +     N T LQ +   GNR
Sbjct: 410 NLQEFTLYHNNLEGKVPKEIGF-LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNR 468

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 425
             GEIP S+ +   L  L+L  N L+G IP  LGN  ++  I + +N L G IP  F  L
Sbjct: 469 LSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFL 528

Query: 426 DSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQL---------------KRG- 468
            +L++  I +N++ G+LP     L  + +++ S N  +G +               + G 
Sbjct: 529 TALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGF 588

Query: 469 ------TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN 522
                      ++L  L L  N+  G IP     +S+LS L +  N+L G + V+L    
Sbjct: 589 EGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCK 648

Query: 523 QLQLLDLSNNNLHGPIP------PCFDNTTLHESYSNSSSPDEQFEI------FFSIEGH 570
           +L  +DL+NN L G IP      P      L  +    S P E F +      F      
Sbjct: 649 KLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSL 708

Query: 571 QGFLEKQNHEIFEFTTKNIAYIYQGKV----------LSLLSGLDLSCNKLIGHIPPQIG 620
            G + +   EI      N   + + ++          LS L  L LS N L G IP +IG
Sbjct: 709 NGSIPQ---EIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIG 765

Query: 621 NLTRIQT-LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679
            L  +Q+ L+LS+NN TG IPST S L  +ESLDLS+N+L G++P Q+ ++K+L   +++
Sbjct: 766 QLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLS 825

Query: 680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASI 727
           YNNL G++   K QF+ +   ++ GN  LCG PL  C    +  + S+
Sbjct: 826 YNNLEGKL---KKQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSL 870

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  248 bits (632), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 217/676 (32%), Positives = 322/676 (47%), Gaps = 73/676 (10%)

Query: 68  NSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV 127
           N +G + + L  LVHLQ    A N L GS+P  +  + +L  LD+S NQLTG I      
Sbjct: 179 NLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FG 237

Query: 128 HLTSIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNAE-NNEIKAEITESHSLIAPKFQL 184
           +L +++ L+L+ N  +  IP  +    +  +L++++ +   +I AE+     L A +   
Sbjct: 238 NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYK 297

Query: 185 NTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL--LENNTKLETLFLVND 242
           N L+ S         P  L+    L ++ LS   + G     +  LE+   LE L L ++
Sbjct: 298 NKLTSS--------IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSN 346

Query: 243 SLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG 302
           +  G F   I + + L  L V  NNI G +P  +G +L +L   +   N L G IPSS  
Sbjct: 347 NFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSIS 405

Query: 303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 362
           N   L++LDLS+N +TGEIP                          R F   NL ++ + 
Sbjct: 406 NCTGLKLLDLSHNQMTGEIP--------------------------RGFGRMNLTFISIG 439

Query: 363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 422
            N F GEIP  +  CS+LE L + +N+L G +   +G L +L+ + +  N L GPIP E 
Sbjct: 440 RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREI 499

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
             L  L IL +  N  +G +P     L++ Q + +  N L G +     F+   L  LDL
Sbjct: 500 GNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDL 558

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP-- 539
           S N+ +G IP     L  L++L L  N   G +   L  L+ L   D+S+N L G IP  
Sbjct: 559 SNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGE 618

Query: 540 --PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 597
                 N  L+ ++SN+        +  +I    G LE     + E    N   ++ G +
Sbjct: 619 LLASLKNMQLYLNFSNNL-------LTGTIPKELGKLEM----VQEIDLSN--NLFSGSI 665

Query: 598 LSLLSG------LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
              L        LD S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ 
Sbjct: 666 PRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLV 725

Query: 651 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 710
           SLDLS+N L G+IP  L  L TL+   +A NNL G +PE    F   N S   GNT LCG
Sbjct: 726 SLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCG 784

Query: 711 LPLPICRSPATMPEAS 726
              P+   P T+ + S
Sbjct: 785 SKKPL--KPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  246 bits (628), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 246/810 (30%), Positives = 368/810 (45%), Gaps = 136/810 (16%)

Query: 70  SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
           +G +   L SLV+++ L I  N+L G +P  + N+ +L++L ++S +LTG I S  L  L
Sbjct: 132 TGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRL 190

Query: 130 TSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE----NNEIKAEIT------------- 172
             ++ L+L +NY + PI  E L N S L +F A     N  I AE+              
Sbjct: 191 VRVQSLILQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANN 249

Query: 173 ----ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN--W 226
               E  S +    QL  LSL +N   G I PK L    +L+ +DLS   + GE P   W
Sbjct: 250 SLTGEIPSQLGEMSQLQYLSLMANQLQGLI-PKSLADLGNLQTLDLSANNLTGEIPEEFW 308

Query: 227 LLENNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVLPSLYV 285
              N ++L  L L N+ L+G     I S+   L QL +S   + G IPV++     SL  
Sbjct: 309 ---NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKC-QSLKQ 364

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 345
            + S N+L GSIP +   +  L  L L NN L G +   ++    NLQ+L L +NNL+G 
Sbjct: 365 LDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS-NLTNLQWLVLYHNNLEGK 423

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 405
           L      L  L+ L L  NRF GEIPQ +  C+SL+ + +  N   G+IP  +G L  L 
Sbjct: 424 LPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELN 483

Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQ 464
            + +  N L G +P        L ILD++DN +SGS+PS F  L  ++Q+ L  N L G 
Sbjct: 484 LLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGN 543

Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSI-----------------------PDWVDGLSQLS 501
           L   +  +  +L  ++LS+NRLNG+I                       P  +     L 
Sbjct: 544 LPD-SLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLD 602

Query: 502 HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP----CFDNTTLHESYSNSSSP 557
            L LG N L G++   L ++ +L LLD+S+N L G IP     C   T +  + +  S P
Sbjct: 603 RLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGP 662

Query: 558 DEQFEIFFSIEGH-----QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 612
              +    S  G        F+E    E+F  T          K+L L     L  N L 
Sbjct: 663 IPPWLGKLSQLGELKLSSNQFVESLPTELFNCT----------KLLVL----SLDGNSLN 708

Query: 613 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 672
           G IP +IGNL  +  LNL  N  +GS+P     L  +  L LS N L G+IP ++ +L+ 
Sbjct: 709 GSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQD 768

Query: 673 LE-VFSVAYNNLSGEIP------------------------------------------- 688
           L+    ++YNN +G+IP                                           
Sbjct: 769 LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNL 828

Query: 689 --EWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFT 746
             + K QF+ +   S+ GNT LCG PL  C    +       N+Q    +   S  I   
Sbjct: 829 GGKLKKQFSRWPADSFLGNTGLCGSPLSRCNRVRS------NNKQQG--LSARSVVIISA 880

Query: 747 TSYVIVIFGIVIVLYVNSYWRRRWFYFVEM 776
            S +  I  +++V+ +  ++++R  +F ++
Sbjct: 881 ISALTAIGLMILVIAL--FFKQRHDFFKKV 908

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 217/755 (28%), Positives = 349/755 (46%), Gaps = 79/755 (10%)

Query: 94  RGSLPW---CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ------- 143
           RGS  W     ++   +  LD+ ++ LTG+++   L  L +++ L L  NYF        
Sbjct: 63  RGSCSWRGVSCSDDGRIVGLDLRNSGLTGTLNLVNLTALPNLQNLYLQGNYFSSGGDSSG 122

Query: 144 -------IPISLEPLFNYSRLK-IFNAENNEIKAEITESHSLIAPKFQ------LNTLSL 189
                  + +S   + +YS +  +F+  +N +   I+ +  +    F       L T+ L
Sbjct: 123 SDCYLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDL 182

Query: 190 SSNYGDGFIFPKFLYH-QHDLEYVDLSHIKMNGEFPNW---------------------- 226
           S N     I   F+      L+Y+DL+H  ++G+F +                       
Sbjct: 183 SYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK 242

Query: 227 ---LLENNTKLETLFLVNDSLAGPFRLP----IHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
               L N   LETL +  ++LAG  ++P      S + L+QL +++N + G IP ++  +
Sbjct: 243 FPITLPNCKFLETLNISRNNLAG--KIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLL 300

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
             +L + + S N   G +PS F    +LQ L+L NN+L+G+    +      + +L ++ 
Sbjct: 301 CKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAY 360

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ---SLSKCSSLEGLYLNNNSLLGKIPR 396
           NN+ G +     N +NL+ L L  N F G +P    SL     LE + + NN L G +P 
Sbjct: 361 NNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPM 420

Query: 397 WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS--CFHPLSIKQV 454
            LG    L+ I +  N L GPIP E   L +L  L +  NN++G++P   C    +++ +
Sbjct: 421 ELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETL 480

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
            L+ N+L G +   +   C++++ + LS NRL G IP  +  LS+L+ L LG+N+L G V
Sbjct: 481 ILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV 539

Query: 515 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT---LHESYSNSSSPDEQFEIFFSIEGHQ 571
             QL     L  LDL++NNL G +P    +     +  S S       + E      G  
Sbjct: 540 PRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 572 GFLEKQNHEIFEFTTKNIAY------IYQGKVLSLLSG------LDLSCNKLIGHIPPQI 619
           G +E +           + +      IY G  +   S        D+S N + G IPP  
Sbjct: 600 GLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGY 659

Query: 620 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679
           GN+  +Q LNL HN +TG+IP +F  LK +  LDLS+N L G +P  L  L  L    V+
Sbjct: 660 GNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVS 719

Query: 680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMD 739
            NNL+G IP +  Q  TF  S Y  N+ LCG+PL  C S    P  S  + +   +    
Sbjct: 720 NNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRIHAKKQTVATAV 778

Query: 740 SFFITFT-TSYVIVIFGIVIVLYVNSYWRRRWFYF 773
              I F+   +V+++  +  V  V    ++R  Y 
Sbjct: 779 IAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  239 bits (611), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 285/585 (48%), Gaps = 72/585 (12%)

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP---FRLPIHSHKRL 258
           F     +L  + LS+    G+ PN L  ++ KL+TL L  +++ GP     +P+ S   +
Sbjct: 147 FFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSSCVSM 206

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 318
             LD S N+I G+I   + +   +L   N S N  DG IP SFG +K LQ LDLS+N LT
Sbjct: 207 TYLDFSGNSISGYISDSLINCT-NLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLT 265

Query: 319 GEIPEHLAVGCVNLQFLALSNNNLQGHL--------FSRNFNLTN--------------- 355
           G IP  +   C +LQ L LS NN  G +        + ++ +L+N               
Sbjct: 266 GWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSF 325

Query: 356 --LQWLQLEGNRFVGEIPQSLSKC-------------------------SSLEGLYLNNN 388
             LQ L L  N   G+ P S+S C                         +SLE L L +N
Sbjct: 326 GSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDN 385

Query: 389 SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP 448
            + G+IP  +   + L+ I +  N+L G IP E   L  L+      NNI+G +P     
Sbjct: 386 LVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGK 445

Query: 449 L-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507
           L ++K + L+ N L G++    FFNCS++  +  + NRL G +P     LS+L+ L LG+
Sbjct: 446 LQNLKDLILNNNQLTGEIPP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGN 504

Query: 508 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQF---EIF 564
           NN  GE+  +L +   L  LDL+ N+L G IPP        ++ S   S +       + 
Sbjct: 505 NNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVG 564

Query: 565 FSIEGHQGFLE------KQNHEIFEFTTKNIAYIYQGKVLSLLSG------LDLSCNKLI 612
            S +G  G +E      ++  +I    + +   +Y G +LSL +       LDLS N+L 
Sbjct: 565 NSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLR 624

Query: 613 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 672
           G IP +IG +  +Q L LSHN L+G IP T   LK++   D S+N+L G+IP     L  
Sbjct: 625 GKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSF 684

Query: 673 LEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 717
           L    ++ N L+G IP+ + Q +T   + Y  N  LCG+PLP C+
Sbjct: 685 LVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECK 728

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 213/640 (33%), Positives = 325/640 (50%), Gaps = 40/640 (6%)

Query: 83  LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 142
           + ++ I S  L+ SLP  +    SL+ L +S   LTG++  S L     ++ L LS+N  
Sbjct: 83  ITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPES-LGDCLGLKVLDLSSNGL 141

Query: 143 --QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFP 200
              IP SL  L N   L I N+  N++  +I      I+   +L +L L  N   G I P
Sbjct: 142 VGDIPWSLSKLRNLETL-ILNS--NQLTGKIPPD---ISKCSKLKSLILFDNLLTGSI-P 194

Query: 201 KFLYHQHDLEYVDLSHIK-MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 259
             L     LE + +   K ++G+ P+  + + + L  L L   S++G     +   K+L 
Sbjct: 195 TELGKLSGLEVIRIGGNKEISGQIPSE-IGDCSNLTVLGLAETSVSGNLPSSLGKLKKLE 253

Query: 260 QLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
            L +    I G IP  +G+   L  L+++ NS   L GSIP   G +  L+ L L  N L
Sbjct: 254 TLSIYTTMISGEIPSDLGNCSELVDLFLYENS---LSGSIPREIGQLTKLEQLFLWQNSL 310

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 377
            G IPE +   C NL+ + LS N L G + S    L+ L+   +  N+F G IP ++S C
Sbjct: 311 VGGIPEEIG-NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNC 369

Query: 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 437
           SSL  L L+ N + G IP  LG LT+L      +N LEG IP        LQ LD+S N+
Sbjct: 370 SSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNS 429

Query: 438 ISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 496
           ++G++PS  F   ++ ++ L  N L G + +    NCSSLV L L +NR+ G IP  +  
Sbjct: 430 LTGTIPSGLFMLRNLTKLLLISNSLSGFIPQ-EIGNCSSLVRLRLGFNRITGEIPSGIGS 488

Query: 497 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 556
           L +++ L    N L G+V  ++   ++LQ++DLSNN+L G +P    + +  +    S++
Sbjct: 489 LKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSAN 548

Query: 557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV---LSLLSG---LDLSCNK 610
              QF     I    G L   N  I    +KN   ++ G +   L + SG   LDL  N+
Sbjct: 549 ---QFS--GKIPASLGRLVSLNKLIL---SKN---LFSGSIPTSLGMCSGLQLLDLGSNE 597

Query: 611 LIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 669
           L G IP ++G++  ++  LNLS N LTG IPS  ++L  +  LDLS+N L G +   L  
Sbjct: 598 LSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLAN 656

Query: 670 LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 709
           ++ L   +++YN+ SG +P+ K  F   +    EGN  LC
Sbjct: 657 IENLVSLNISYNSFSGYLPDNKL-FRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  230 bits (586), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 228/731 (31%), Positives = 341/731 (46%), Gaps = 34/731 (4%)

Query: 70  SGTLD-QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT-GSISSSPLV 127
           +GTL+   L +L +L+ LY+  N+   S     ++  SL +LD+SSN LT  SI      
Sbjct: 89  TGTLNLNNLTALSNLRSLYLQGNNFS-SGDSSSSSGCSLEVLDLSSNSLTDSSIVDYVFS 147

Query: 128 HLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTL 187
              ++  +  S+N     +   P  +  R+   +  NN    EI E+     P   L  L
Sbjct: 148 TCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPN-SLKHL 206

Query: 188 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP 247
            LS N   G           +L    LS   ++G+     L N   LETL L  +SL G 
Sbjct: 207 DLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRNSLIG- 265

Query: 248 FRLPIHSH----KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 303
            ++P   +    + LRQL +++N   G IP ++  +  +L V + S N+L G +P SF +
Sbjct: 266 -KIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSFTS 324

Query: 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363
              LQ L+L NN L+G+    +      +  L L  NN+ G +     N +NL+ L L  
Sbjct: 325 CGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSS 384

Query: 364 NRFVGEIPQ---SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
           N F GE+P    SL   S LE L + NN L G +P  LG    L+ I +  N L G IP 
Sbjct: 385 NEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPK 444

Query: 421 EFCQLDSLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478
           E   L  L  L +  NN++G +P   C    +++ + L+ N+L G L   +   C++++ 
Sbjct: 445 EIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPE-SISKCTNMLW 503

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538
           + LS N L G IP  +  L +L+ L LG+N+L G +  +L     L  LDL++NNL G +
Sbjct: 504 ISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNL 563

Query: 539 PPCFDNTT---LHESYSNSSSPDEQFEIFFSIEGHQGFLE-----KQNHEIFEFT-TKNI 589
           P    +     +  S S       + E      G  G +E      +  E F    +   
Sbjct: 564 PGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPK 623

Query: 590 AYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 643
             IY G  + + S       LDLS N + G IP   G +  +Q LNL HN LTG+IP +F
Sbjct: 624 TRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSF 683

Query: 644 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 703
             LK +  LDLS+N L G +P  L  L  L    V+ NNL+G IP +  Q  TF  + Y 
Sbjct: 684 GGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYA 742

Query: 704 GNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFT-TSYVIVIFGIVIVLYV 762
            N+ LCG+PLP C S  + P  S  + +  ++    S  I F+    V++I  +     V
Sbjct: 743 NNSGLCGVPLPPCSS-GSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVMLIMALYRARKV 801

Query: 763 NSYWRRRWFYF 773
               ++R  Y 
Sbjct: 802 QKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  229 bits (584), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 211/681 (30%), Positives = 324/681 (47%), Gaps = 95/681 (13%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           S+ +L+ L L+    G   SG +   + +L HLQ L ++ N L G LP  ++ +  L  L
Sbjct: 87  SLKNLRELCLA----GNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYL 142

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKI-FNAENNEI 167
           D+S N  +GS+  S  + L ++  L +SNN    +IP  +  L N S L +  N+ + +I
Sbjct: 143 DLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQI 202

Query: 168 KAEITESHSLIAPKFQLNTLSLSSNYGDGFIF-----PKFLYHQHDLEYVDLSHIKMNGE 222
            +EI               +SL  N+     F     PK +     L  +DLS+  +   
Sbjct: 203 PSEI-------------GNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCS 249

Query: 223 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 282
            P    E +  L  L LV+  L G     + + K L+ L +S N++ G +P+++ ++   
Sbjct: 250 IPKSFGELHN-LSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEI--P 306

Query: 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
           L  F+   N L GS+PS  G  K L  L L+NN  +GEIP H    C  L+ L+L++N L
Sbjct: 307 LLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIP-HEIEDCPMLKHLSLASNLL 365

Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL------------ 390
            G +        +L+ + L GN   G I +    CSSL  L L NN +            
Sbjct: 366 SGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP 425

Query: 391 -----------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
                       G+IP+ L   T L       N LEG +P E     SL+ L +SDN ++
Sbjct: 426 LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLT 485

Query: 440 GSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
           G +P     L S+  ++L+ NM  G++      +C+SL TLDL  N L G IPD +  L+
Sbjct: 486 GEIPREIGKLTSLSVLNLNANMFQGKIPV-ELGDCTSLTTLDLGSNNLQGQIPDKITALA 544

Query: 499 QLSHLILGHNNLEGEV---------SVQLCELNQLQ---LLDLSNNNLHGPIPPCFDNTT 546
           QL  L+L +NNL G +          +++ +L+ LQ   + DLS N L GPIP       
Sbjct: 545 QLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIP------- 597

Query: 547 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                      +E  E    +E     +   N+ +      +++       L+ L+ LDL
Sbjct: 598 -----------EELGECLVLVE-----ISLSNNHLSGEIPASLSR------LTNLTILDL 635

Query: 607 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 666
           S N L G IP ++GN  ++Q LNL++N L G IP +F  L  +  L+L+ NKL+G +P  
Sbjct: 636 SGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPAS 695

Query: 667 LVELKTLEVFSVAYNNLSGEI 687
           L  LK L    +++NNLSGE+
Sbjct: 696 LGNLKELTHMDLSFNNLSGEL 716

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 219/724 (30%), Positives = 344/724 (47%), Gaps = 44/724 (6%)

Query: 66  GTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125
           G N SGTL   +C L  L++L +++N + G +P  ++   SL +LD+ +N+  G I    
Sbjct: 76  GMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQ- 134

Query: 126 LVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 183
           L  + ++++L L  NY    IP  +  L +   L I+   +N +   I  S   +A   Q
Sbjct: 135 LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIY---SNNLTGVIPPS---MAKLRQ 188

Query: 184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 243
           L  +    N   G I P  +     L+ + L+   + G  P   LE    L  L L  + 
Sbjct: 189 LRIIRAGRNGFSGVI-PSEISGCESLKVLGLAENLLEGSLPKQ-LEKLQNLTDLILWQNR 246

Query: 244 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIPSSF 301
           L+G     + +  RL  L +  N   G IP +IG +  +  LY++ N    L G IP   
Sbjct: 247 LSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQ---LTGEIPREI 303

Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
           GN+     +D S N LTG IP+      +NL+ L L  N L G +      LT L+ L L
Sbjct: 304 GNLIDAAEIDFSENQLTGFIPKEFG-HILNLKLLHLFENILLGPIPRELGELTLLEKLDL 362

Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 421
             NR  G IPQ L     L  L L +N L GKIP  +G  +    + M  N L GPIP  
Sbjct: 363 SINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAH 422

Query: 422 FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
           FC+  +L +L +  N +SG++P       S+ ++ L  N L G L     FN  +L  L+
Sbjct: 423 FCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNLQNLTALE 481

Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 540
           L  N L+G+I   +  L  L  L L +NN  GE+  ++  L ++   ++S+N L G IP 
Sbjct: 482 LHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPK 541

Query: 541 CFDNTTLHESYSNSSSPDEQFEIFFSIE-GHQGFLEKQNHEIFEFT----TKNIAYIYQG 595
              +    +    S +   +F  + + E G   +L     EI   +    T  I + +  
Sbjct: 542 ELGSCVTIQRLDLSGN---KFSGYIAQELGQLVYL-----EILRLSDNRLTGEIPHSFGD 593

Query: 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDL 654
             L+ L  L L  N L  +IP ++G LT +Q +LN+SHNNL+G+IP +  NL+ +E L L
Sbjct: 594 --LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYL 651

Query: 655 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714
           ++NKL+G+IP  +  L +L + +++ NNL G +P+  A F   + S++ GN  LC     
Sbjct: 652 NDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNSQRS 710

Query: 715 ICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYW--RRRWFY 772
            C+      ++ +      N +   S      T   IVI  + ++ ++   W  +RR   
Sbjct: 711 HCQPLVPHSDSKL------NWLINGSQRQKILTITCIVIGSVFLITFLGLCWTIKRREPA 764

Query: 773 FVEM 776
           FV +
Sbjct: 765 FVAL 768

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 203/653 (31%), Positives = 304/653 (46%), Gaps = 105/653 (16%)

Query: 43  SFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMA 102
           S+L +  +    +  L+LS Y +    SG     +  L HL+++ ++ N   GS+P  + 
Sbjct: 58  SWLGVECDRRQFVDTLNLSSYGI----SGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLG 113

Query: 103 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
           N + L  +D+SSN  TG+I                       P +L  L N   L +F  
Sbjct: 114 NCSLLEHIDLSSNSFTGNI-----------------------PDTLGALQNLRNLSLF-- 148

Query: 163 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 222
                       +SLI P                  FP+ L     LE V  +   +NG 
Sbjct: 149 -----------FNSLIGP------------------FPESLLSIPHLETVYFTGNGLNGS 179

Query: 223 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 282
            P+ +  N ++L TL+L ++  +GP    + +   L++L +++NN+ G +PV + + L +
Sbjct: 180 IPSNI-GNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNN-LEN 237

Query: 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
           L   +   N+L G+IP  F + K +  + LSNN  TG +P  L   C +L+     +  L
Sbjct: 238 LVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLG-NCTSLREFGAFSCAL 296

Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
            G + S    LT L  L L GN F G IP  L KC S+  L L  N L G+IP  LG L+
Sbjct: 297 SGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLS 356

Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNML 461
           +LQY+ +  N+L G +P+   ++ SLQ L +  NN+SG LP     L  +  + L +N  
Sbjct: 357 QLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHF 416

Query: 462 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL 521
            G + +    N SSL  LDL+ N   G IP  +    +L  L+LG+N LEG V   L   
Sbjct: 417 TGVIPQDLGAN-SSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGC 475

Query: 522 NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI 581
           + L+ L L  NNL G +P                                 F+EKQN   
Sbjct: 476 STLERLILEENNLRGGLP--------------------------------DFVEKQNLLF 503

Query: 582 FEFTTKNIAYIYQGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635
           F+ +  N    + G +      L  ++ + LS N+L G IPP++G+L +++ LNLSHN L
Sbjct: 504 FDLSGNN----FTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNIL 559

Query: 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
            G +PS  SN   +  LD S+N LNG IP  L  L  L   S+  N+ SG IP
Sbjct: 560 KGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	779
255581263	912	serine-threonine protein kinase, plant-t	0.947	0.809	0.514	0.0
224123984	1016	predicted protein [Populus trichocarpa]	0.920	0.705	0.480	1e-173
224142481	781	predicted protein [Populus trichocarpa]	0.935	0.933	0.468	1e-173
224073436	1014	predicted protein [Populus trichocarpa]	0.962	0.739	0.456	1e-169
224134891	953	predicted protein [Populus trichocarpa]	0.955	0.780	0.450	1e-167
224073382	1309	predicted protein [Populus trichocarpa]	0.879	0.523	0.470	1e-165
224073422	969	predicted protein [Populus trichocarpa]	0.946	0.760	0.460	1e-165
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.964	0.512	0.440	1e-162
224098008	1097	predicted protein [Populus trichocarpa]	0.916	0.650	0.459	1e-162
224073452	710	predicted protein [Populus trichocarpa]	0.852	0.935	0.479	1e-160

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/775 (51%), Positives = 517/775 (66%), Gaps = 37/775 (4%)

Query: 10  VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNS 69
           +++Q  P+F++LE   +D          I L  SFLQ +   M SLK LSLS    G   
Sbjct: 168 IQAQDLPNFENLEELYLDK---------IELENSFLQTVG-VMTSLKVLSLS----GCGL 213

Query: 70  SGTLD--QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV 127
           +G L   QGLC L+HL+ L ++SN+  G LPWC++N+TSL++LD+SSNQ  G IS+SPL 
Sbjct: 214 TGALPNVQGLCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLK 273

Query: 128 HLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTL 187
            L S+ +L +SNN+FQ+P SL P FN+S LK    +NN I  E  E HS  AP+FQL ++
Sbjct: 274 ILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISI 330

Query: 188 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP 247
            + S YG    FP FLYHQ++L++VDLSH+ + GEFPNWLL NNT+LE L LVN+SL+G 
Sbjct: 331 -IFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGH 389

Query: 248 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 307
            +LP+H H  L  LD+SNN++  HIP++IG  LP L + N S N  DGSIPSSFGNM  L
Sbjct: 390 LQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSL 449

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 367
           +ILDLSNN L+G IPEHLA GC +L  L LSNN+LQG +FS+ FNLTNL WL+L+ N F 
Sbjct: 450 RILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFS 509

Query: 368 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 427
           G IP+SLSK S+L  + L++N L G IP W+GNL+ LQ +I+ NN L+GPIPVEFCQL  
Sbjct: 510 GRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHY 568

Query: 428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           L++LD+++N++SG LPSC  P SI  VHLS+NM+ G      F     LVTLDLS NR+ 
Sbjct: 569 LEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRIT 627

Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 547
           G IP  + G++ L  L L  N  +GE+  Q+C L QL L+ L++NNL G IP C     L
Sbjct: 628 GRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----L 682

Query: 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607
               S+S +PD           +             FTTK  +Y YQGK+LS +SG+D S
Sbjct: 683 QLDQSDSLAPDVPPVPNPLNPYYLPV------RPMYFTTKRRSYSYQGKILSYISGIDFS 736

Query: 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 667
           CNKL G IPP++GN + I +LNLS+N  TG IPSTFSNLK +ESLDLS N LNG IP QL
Sbjct: 737 CNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQL 796

Query: 668 VELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC---RSPATMPE 724
           +ELK L  FSVA+NNL G+ P+   QFATF  SSYEGN  LCGLPLP     R  ++ P 
Sbjct: 797 LELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPR 856

Query: 725 ASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWIT 779
           AS  +E+  N +DM++F+ +F  SY  VI G+ +VLY+N  WRR WF FV++ I+
Sbjct: 857 ASAMDEE-SNFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICIS 910

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 358/745 (48%), Positives = 470/745 (63%), Gaps = 28/745 (3%)

Query: 52  MPSLKYLSLSYYTLGTNSSGTL-DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           +P+LK LS     L    +GTL  QGLC L +L++L+++ N+L GSLP C  N++SL++L
Sbjct: 263 LPALKVLSAGECDL----NGTLPAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLL 318

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
           DVS NQ  G+I+SSPL +L S+E + LSNN+FQ+PIS++P  N+S L+ F+++NN +  E
Sbjct: 319 DVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTE 378

Query: 171 ITESHSLIAPKFQLNTLSLSSNYGDGFIF--PKFLYHQHDLEYVDLSHIKMNGEFPNWLL 228
               H LI PKFQL   SLS +  +      P FLY+QHDL  +DLS     G FP+WLL
Sbjct: 379 PMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLL 437

Query: 229 ENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 288
           +NNT+LE LFL  +S  G  +L  H +  +  +D+SNNN+ G IP  I  +  +L+    
Sbjct: 438 KNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRM 497

Query: 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 348
           + N L G IPS  GN   L +LDLSNN L+    E      + L FL LSNNNL G L +
Sbjct: 498 AKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPA 553

Query: 349 RNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL-EGLYLNNNSLLGKIPRWLGNLTRLQYI 407
              N + L +L L  N F G+I    S   ++   L L+NN   G +PRW  NLT++  I
Sbjct: 554 SMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAI 613

Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 467
            +  NH  GPIPVEFC+LD L+ LD+SDNN+  S+PSCF+P  I  VHLSKN L G L  
Sbjct: 614 DLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTY 673

Query: 468 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 527
           G F+N SSLVTLDL  N   GSI +W+  LS LS L+L  NN +GE  VQLC L QL +L
Sbjct: 674 G-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSIL 732

Query: 528 DLSNNNLHGPIPPCFDNTTLHESYSNSS---------SPDEQFEIFFSIEGH---QGFLE 575
           D+S N L GP+P C  N +  ESY  +S         +P E+    F+         ++ 
Sbjct: 733 DVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIP 792

Query: 576 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635
               E+ EFT K++ Y Y+GK+LS +SG+DLS NK  G IPP++GNL+ +  LNLSHNNL
Sbjct: 793 ITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNL 852

Query: 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 695
           TGSIP+TFSNLK +ES DLS N L+G IPH+L E+ TLEVFSVA+NNLSGE PE K QF 
Sbjct: 853 TGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFG 912

Query: 696 TFNESSYEGNTFLCGLPLPICRSPATMPEASIGN--EQDDNLIDMDSFFITFTTSYVIVI 753
           TF+ESSYEGN FLCG PL    S    P   + N  ++DD  IDM+ F+I+    Y++V+
Sbjct: 913 TFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIVVV 972

Query: 754 FGIVIVLYVNSYWRRRWFYFVEMWI 778
            GI  VLY+N YWR  WF F++  I
Sbjct: 973 MGIAAVLYINPYWRCGWFNFIDYCI 997

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 367/784 (46%), Positives = 496/784 (63%), Gaps = 55/784 (7%)

Query: 5   EVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYT 64
           E+     S GF     L   ++      L  SF  +N S L  + E + SLK+L+L    
Sbjct: 11  EIQNFATSTGFERSLRLNKLEI------LELSFNKINDSTLSFL-EGLSSLKHLNLDNNQ 63

Query: 65  LGTNSSGTLD-QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS 123
           L     G++D +GLC L  LQEL I+ NDL G LP C+ N+ +L++LD+S N  +G+IS 
Sbjct: 64  L----KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISL 118

Query: 124 SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 183
           S +  LTSI +L LS+N+FQIPISL P FN S LK  N ++NEI       H+LI P+FQ
Sbjct: 119 SRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQ 177

Query: 184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 243
           L  LSL+  +G G  FPKFLY+QHDL++VDLSHIK+ GEFP+WLL+NNTKLE L+LVN S
Sbjct: 178 LQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSS 236

Query: 244 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 303
           L+G  +LP  SH  L +LD+S N+I+  IP KIG   P L   N S N   GSIPSS  N
Sbjct: 237 LSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISN 296

Query: 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363
           M  L +LDLSNN L+G IPE L  GC++L+ L LSNN+L+G  F R+FNL  L  L L G
Sbjct: 297 MSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSG 356

Query: 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
           N+  G +P SLS  S LE L ++ N+L GKIPRW+G ++ LQY+ +  N+L G +P  FC
Sbjct: 357 NQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFC 416

Query: 424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
                                     ++ +V+LSKN L G L  G    C SL  LDLS+
Sbjct: 417 S-----------------------SRTMTEVYLSKNKLEGSLI-GALDGCLSLNRLDLSH 452

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 543
           N   G IP+ +  L +LS L+LG+NNLEG++  QLC+L +L L+DLS+N+L G I PC  
Sbjct: 453 NYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQ 512

Query: 544 ---------NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 594
                     T+L+ S ++    +   +I F +   +   +   ++  EFTTK+I+Y ++
Sbjct: 513 PTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVE---DPSMNKSVEFTTKSISYSFK 569

Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
           G +L  +SG+DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNLK +ESLDL
Sbjct: 570 GIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDL 629

Query: 655 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714
           S N LNG+IP QL++L  L  FSVA+NNLSG+ PE  AQF+TFN+S YEGN  LCG PL 
Sbjct: 630 SYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLA 689

Query: 715 --ICRS--PATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRW 770
               R+  P+ +P +    ++++ +IDM++F +TF+ +Y++V+  I  VLY+N  WRR W
Sbjct: 690 RNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAW 749

Query: 771 FYFV 774
           FYF+
Sbjct: 750 FYFI 753

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 368/807 (45%), Positives = 492/807 (60%), Gaps = 57/807 (7%)

Query: 1   MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSL 60
           + S  VNG      F +  +LE   +D T + +N         FLQ I  ++P LK LS+
Sbjct: 211 LGSTTVNGT-----FFNSSTLEELYLDRTSLPIN---------FLQNIG-ALPDLKVLSV 255

Query: 61  SYYTLGTNSSGTL-DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTG 119
           +   L     GTL  QG C L +L++L ++ N+L GSLP C+ N++SL++LDVS NQ TG
Sbjct: 256 AECDL----HGTLPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTG 311

Query: 120 SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIA 179
           +I+S PL +LTS+E L LSNN F++PIS++P  N+S LK F++ENN++  E     +LI 
Sbjct: 312 NIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI- 370

Query: 180 PKFQLNTLSLS-SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLF 238
           PKFQL    LS +        P FLY+Q+D+  +DLSH  +   FP+WLL+NNT+LE L+
Sbjct: 371 PKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLY 430

Query: 239 LVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP 298
           L N+S  G  +L  H +  + +LD+SNNN+ G IP  I  + P+++    + N   G IP
Sbjct: 431 LSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIP 490

Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358
           S  GN+  L+ILDLSNN L+    E L      + FL LSNNNL G L +  FN + L++
Sbjct: 491 SCLGNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEY 546

Query: 359 LQLEGNRFVGEIPQSLSKCSSL-EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 417
           L L GN F G+I   L     +   L L++N   G +PRWL N T L  I +  N+ +GP
Sbjct: 547 LYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGP 606

Query: 418 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477
           I  +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F+N SSLV
Sbjct: 607 ILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLV 665

Query: 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 537
           T+DL  N   GS P+W+  LS LS L+L  N+ +GE+ VQLC L QL +LD+S N L GP
Sbjct: 666 TMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGP 725

Query: 538 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG-----------------HQGFLEKQNHE 580
           +P C  N T  ES   + +      +  SIE                   +GFL     E
Sbjct: 726 LPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEE 785

Query: 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 640
           + EFTTKN+ Y Y+GK LS +SG+DLS N  +G IPP+ G+L++I +LNLSHNNLTGSIP
Sbjct: 786 VIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIP 845

Query: 641 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNES 700
           +TFSNLK +ESLDLS N LNG IP QL ++ TLEVFSVA+NNLSG  PE K QF TF+ES
Sbjct: 846 ATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDES 905

Query: 701 SYEGNTFLCGLPL------------PICRSPATMPEASIGNEQDDNLIDMDSFFITFTTS 748
            YEGN FLCG PL            P+   P          + DD  IDM+ F+I F   
Sbjct: 906 CYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVC 965

Query: 749 YVIVIFGIVIVLYVNSYWRRRWFYFVE 775
           Y +V+  IV+VLY++ YWRRRW YF+E
Sbjct: 966 YTVVVMIIVVVLYIDPYWRRRWSYFIE 992

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1538), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 360/799 (45%), Positives = 476/799 (59%), Gaps = 55/799 (6%)

Query: 6   VNGVVRSQG-FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYT 64
            NG+    G F +  +LE   +D T + +N         FLQ I  ++P+LK LS++   
Sbjct: 159 ANGLTAGSGTFFNSSTLEELYLDNTSLRIN---------FLQNIG-ALPALKVLSVAECD 208

Query: 65  LGTNSSGTL-DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS 123
           L     GTL  QG C L +L++L +A N+  GSLP C+ N++SL++LDVS NQ TG+ +S
Sbjct: 209 L----HGTLPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTS 264

Query: 124 SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 183
            PL +L S+E L+LSNN F++PIS++P  N+S LK F++ENN +  E     +LI PKFQ
Sbjct: 265 GPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKFQ 323

Query: 184 LNTLSLSSNYGDGF--IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 241
           L    LSS+       + P FLY+Q DL  +DLSH  + G FP+WLL+NNT+LE L+L  
Sbjct: 324 LVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSA 383

Query: 242 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 301
           +   G  +L  H +  + +LD+SNNN+ G I   I  + P+L+    + N   G IPS  
Sbjct: 384 NFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCL 443

Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
           GN+  L  LDLSNN L+    E L +       L LSNN+L G + +  FN +  Q+L L
Sbjct: 444 GNISSLLFLDLSNNQLSTVQLEQLTI-----PVLKLSNNSLGGQIPTSVFNSSTSQFLYL 498

Query: 362 EGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
            GN F G+I    L     L  L L+NN   G +PR   N T L+ + +  NH +GPIP 
Sbjct: 499 NGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPK 558

Query: 421 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
           +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L  G FFN S LVT+D
Sbjct: 559 DFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTMD 617

Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 540
           L  N L GSIP+W+   S LS L+L  N+ +GE+ VQLC L QL +LD+S N L GP+P 
Sbjct: 618 LRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPS 677

Query: 541 CFDNTTLHESYSNSSSPDEQFEIFFSIEGH-----------------QGFLEKQNHEIFE 583
           C  N T  ES   +        +  S+E                   + F      E+ E
Sbjct: 678 CLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIE 737

Query: 584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 643
           F TKN+ Y Y+G +LS +SG+DLS N   G IP + GNL+ I++LNLSHNN T SIP+TF
Sbjct: 738 FRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATF 797

Query: 644 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 703
           SNLK +ESLDLS N LNG IP QL E+ TLEVFSVA+NNLSG  PE K QF TF+ES YE
Sbjct: 798 SNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYE 857

Query: 704 GNTFLCGLPL-------PICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGI 756
           GN FLCG PL       P+   P  +P+   G   D   IDM+ F+I+F   Y +V+  I
Sbjct: 858 GNPFLCGPPLRNNCSVEPVSSQP--VPDDEQG---DVGFIDMEFFYISFGVCYTVVVMTI 912

Query: 757 VIVLYVNSYWRRRWFYFVE 775
             VLY+N YWRRRW YF+E
Sbjct: 913 AAVLYINPYWRRRWLYFIE 931

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 346/736 (47%), Positives = 456/736 (61%), Gaps = 51/736 (6%)

Query: 76   GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
            G C + +L++L ++ N+  GSLP C+ N++SL++LD+S NQ TG+I+ SPL +L S+E L
Sbjct: 567  GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFL 626

Query: 136  MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS-SNYG 194
             LSNN F++P S++P  N+S LK F  ENN +  E      LI PKFQL   SLS +   
Sbjct: 627  SLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLI-PKFQLVFFSLSKTTEA 685

Query: 195  DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 254
                 P FLY+Q+ L ++DLSH  + G FP+WLL+NNT+LE L+L  +S+ G  +L  H 
Sbjct: 686  LNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHP 745

Query: 255  HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
            + ++ +LD+SNNN+ G IP  I  + P+L     + N   G IPS  GNM  L +LDLSN
Sbjct: 746  YPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSN 805

Query: 315  NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS- 373
            N L+    E L      + FL LSNNNL G + +  FN +  ++L L  N F G+I  S 
Sbjct: 806  NQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSP 861

Query: 374  LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQLDSLQILD 432
            L+   +   L L+NN   G +PRW  N T L  I +  NH EGPI   F C+LD L+ LD
Sbjct: 862  LNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLD 921

Query: 433  ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
            +S+NN+ G +PSCF+   I  VHLSKN L G LK   F+N SSLVT+DL  N   GSIP+
Sbjct: 922  LSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSIPN 980

Query: 493  WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES-- 550
            WV  LS LS L+L  N+L+GE+ VQLC L QL +LD+S N L GP+P C +N T  ES  
Sbjct: 981  WVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQ 1040

Query: 551  ------------------YSNSSSPDEQFEIFFSIEGH-QGFLEKQNHEIFEFTTKNIAY 591
                              Y+    P +   I+  ++G+   F E    E+ EFTTKN+ Y
Sbjct: 1041 KALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTE----EVIEFTTKNMYY 1096

Query: 592  IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 651
             Y+GK+LS +SG+DLS N  +G IPP+ GNL+ I +LNLSHNNLTGSIP+TFSNLK +ES
Sbjct: 1097 GYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIES 1156

Query: 652  LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 711
            LDLS N  NG IP QL E+ TLEVFSVA+NNLSG+ PE K QF TF+ES YEGN FLCG 
Sbjct: 1157 LDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGP 1216

Query: 712  PL------------PICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIV 759
            PL            P+   P    E     ++DD  IDM+ F+I+F+  Y +V+  I  V
Sbjct: 1217 PLRNNCSEEVVLSQPVLSQPVPNDE-----QEDDGFIDMEFFYISFSVCYTVVVMTIAAV 1271

Query: 760  LYVNSYWRRRWFYFVE 775
            LY+N YWRRRW YF+E
Sbjct: 1272 LYINPYWRRRWLYFIE 1287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/790 (46%), Positives = 478/790 (60%), Gaps = 53/790 (6%)

Query: 12  SQG-FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSS 70
           SQG F +  +LE   +D T + +N         FLQ  + ++P+LK LS+    L     
Sbjct: 191 SQGTFFNSSTLEELHLDNTSLPIN---------FLQN-TRALPALKVLSVGECDL----H 236

Query: 71  GTL-DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
           GTL  QG C L +L++L +A N+  G+LP C+ N++SL +LDVS NQ TG+I S PL +L
Sbjct: 237 GTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNL 296

Query: 130 TSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSL 189
            S+E L LSNN F++P S++P  N+S LK F++ENN +  E     +LI PKFQL  LSL
Sbjct: 297 VSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSL 355

Query: 190 -SSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 248
             +        P FLY+Q+DL  +DLSH  + G FP+WLL+NNT++E L L ++S  G  
Sbjct: 356 LKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTL 415

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
           +LP H +  + +LD+SNNN+   IP  I  +LP+L       N   G IPS  GN+  L 
Sbjct: 416 QLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLS 475

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 368
           +LDLSNN L+    E L      L FL LSNNNL G +    FN + L++L L GN F G
Sbjct: 476 VLDLSNNQLSTVKLELLTT----LMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCG 531

Query: 369 EIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQLD 426
           +I   SL +      L L+NN   G +PRW  N T L+ I +  NH +GPIP +F C+ D
Sbjct: 532 QILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFD 591

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
            L+ LD+S+NN+SG +PSCF P  I  +HLSKN L G L  G F+N SSLVT+DL  N  
Sbjct: 592 HLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSF 650

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
             SIP+W+  LS LS L+L  N+ +           QL +LD+S N L GP+P C  N T
Sbjct: 651 TDSIPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLT 700

Query: 547 LHESYSNSSSPDEQFEIFFSIEGH----------------QGFLEKQNHEIFEFTTKNIA 590
             ES   +      F+I  SIE                  +GF      E+ EFTTK ++
Sbjct: 701 FKESSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMS 760

Query: 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
           Y Y+GKVL+ +SG+DLS N  +G IPP+ GNL+ I +LNLSHNNLTGSIP+TFSNLK +E
Sbjct: 761 YGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIE 820

Query: 651 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 710
           SLDLS N LNG IP QL E+ TLEVFSVA+NNLSG+ PE K QF TF+ES YEGN FLCG
Sbjct: 821 SLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCG 880

Query: 711 LPLP-ICRSPATMPEASIGNEQ-DDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRR 768
            PL   C   A   +    +EQ DD  +DM+ F+I+F   Y +V+  I  VLY+N YWRR
Sbjct: 881 PPLRNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRR 940

Query: 769 RWFYFVEMWI 778
           RW +F+E  I
Sbjct: 941 RWLFFIEDCI 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 351/796 (44%), Positives = 487/796 (61%), Gaps = 45/796 (5%)

Query: 5    EVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYT 64
            ++ G V  +   + ++LE  D+  T I+         +S LQI+ E M SLK LSL   +
Sbjct: 678  KLEGSVTLRELNNLRNLEVLDLSSTNIS---------SSILQIV-EVMTSLKALSLR--S 725

Query: 65   LGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSS 124
             G N S T  QGLC L +LQEL ++ N   GS+  C+ N+TSLR LD+S N+ +G++ SS
Sbjct: 726  NGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSS 785

Query: 125  PLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN--AENNEIKAEITESHSLIAPKF 182
                L  +E L LS+N FQ    +     +S+L++ +    NN +  E +E  + + P F
Sbjct: 786  LFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLE-SEDQTWV-PSF 843

Query: 183  QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 242
            QL    LSS        P FL++QHDL  VDLS+  +  +FP WL++NNT+LE L L N+
Sbjct: 844  QLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNN 903

Query: 243  SLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG 302
            SL G F LP   +     +D+SNN ++G +P  I   LP+L   N S N+ +GSIPS FG
Sbjct: 904  SLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FG 962

Query: 303  NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 362
             M+ L  LDLSNN  TG IPE LA+GC +L++L LS N+L G +F R  NL +L+ L+L+
Sbjct: 963  GMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELD 1022

Query: 363  GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 422
             N F G+IP  LS  S LE LY+++NS+ GK+P W+GN++ L  ++MPNN LEGPIPVEF
Sbjct: 1023 DNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEF 1081

Query: 423  CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
            C LD+L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F     L TLD+ 
Sbjct: 1082 CSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIR 1140

Query: 483  YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 542
             N L+G IPDW+   S LS L+L  N+ +G++  QLC+L+++ +LDLS N+L G IP C 
Sbjct: 1141 NNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCL 1200

Query: 543  DNTTLHESYSNSSSPDEQFEI--FFSIEGHQGFLEKQNH-----------------EIFE 583
            +       + +      +F I  +F   G   +L    H                  + E
Sbjct: 1201 NKIQFRTGFRSG-----KFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAE 1255

Query: 584  FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 643
            FTTKN    Y+G  L  ++G+DLS NKL G IPP+IGNL+++  LNLSHN LTG IP+ F
Sbjct: 1256 FTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAF 1315

Query: 644  SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 703
            S LK +ESLDLS N L G IP +L EL  L VFSVAYNNLSG+IPE  AQF TF E+SY 
Sbjct: 1316 SGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYV 1375

Query: 704  GNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVN 763
            GN +LCG  L   ++ +   E +   E +  L D D F+++F  SYV+V+ G+  VLY+N
Sbjct: 1376 GNPYLCGSLLR--KNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYIN 1433

Query: 764  SYWRRRWFYFVEMWIT 779
              WR++WF+ +++ IT
Sbjct: 1434 GGWRKKWFHVIDVLIT 1449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 355/773 (45%), Positives = 470/773 (60%), Gaps = 59/773 (7%)

Query: 12   SQG-FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSS 70
            SQG F +  +LE   +D T + +N         FLQ  + ++P+LK LS++   L     
Sbjct: 353  SQGTFFNSSTLEELHLDNTSLPIN---------FLQN-TGALPALKVLSVAECDL----H 398

Query: 71   GTL-DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
            GTL  QG C L +L++L +A N+  G+LP C+ N++SL++LDVS NQ TG+I+  PL  L
Sbjct: 399  GTLPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKL 458

Query: 130  TSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSL 189
             S+E L LSNN F++PIS++P  N+S LK F++ENN +  E     +LI PKFQL    L
Sbjct: 459  ISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKFQLVFFRL 517

Query: 190  SSNYGDGFI---FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
            SS+     +      FLY+Q+DL  +DLSH  + G FP+WLL+NNT++E L+L  +S  G
Sbjct: 518  SSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVG 577

Query: 247  PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
              +L  H +  + +LD+SNNNI G IP  I  + P+L++   + N   G IPS  GN   
Sbjct: 578  TLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSS 637

Query: 307  LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
            L  LDLSNN L+    E L      +Q L LSNN+L G + +  FN +  Q+L L GN F
Sbjct: 638  LSFLDLSNNQLSTVKLEQLTT----IQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYF 693

Query: 367  VGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 425
             G+I    L        L L+NN   G +PR   N T  + + +  N  +GPIP +FC+L
Sbjct: 694  WGQISDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKL 753

Query: 426  DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
            D L+ LD+SDN +SG +PSCF+P  I  +HLSKN L G L  G F+N SSLVT+DL  N 
Sbjct: 754  DRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNS 812

Query: 486  LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 545
              GSIP+W+  LS LS L+L  NN +GE++VQLC L QL +LD+S N L GP+P C  N 
Sbjct: 813  FIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNL 872

Query: 546  TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 605
            TL E   N+        I+FS+                           GKVLS + G+D
Sbjct: 873  TLKEIPENARGS----RIWFSV--------------------------MGKVLSYMYGID 902

Query: 606  LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 665
            LS N  +G IPP+ GNL++I +LNLSHNNLTGSIP+TFSNLK +ESLDLS N LNG IP 
Sbjct: 903  LSNNNFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPP 962

Query: 666  QLVELKTLEVFSVAYNNLSGEIPEWKAQFATF-NESSYEGNTFLCGLPLPICRSPATMPE 724
            QL E+ TLEVFSVAYNNLSG  PE K QF TF +E+ YEGN FLCG PL    S   +P 
Sbjct: 963  QLTEITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPL 1022

Query: 725  ASIGNEQ--DDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVE 775
              + N++  DD  IDM+ F+I+F   Y +V+  I  VLY+N YWRRRW YF+E
Sbjct: 1023 QPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIE 1075

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 334/696 (47%), Positives = 434/696 (62%), Gaps = 32/696 (4%)

Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
           M+SL++LDVS NQ TG+I+  PL +L S+E L LSNN F++PIS++P  N+S LK F++E
Sbjct: 1   MSSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSE 60

Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF--IFPKFLYHQHDLEYVDLSHIKMNG 221
           NN++  E     +LI PKFQL    LSS+       + P FLY+Q DL  +DLSH  + G
Sbjct: 61  NNKLVTEPAAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITG 119

Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
            FP+WLL+NNT+LE L+L ++S  G  +L  H H  +  LD+SNNN+ G IP  I  + P
Sbjct: 120 MFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFP 179

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
           +L+    + N   G IPS  GN+  L  LDLSNN L+    E L    V    L LSNNN
Sbjct: 180 NLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNN 235

Query: 342 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGKIPRWLGN 400
           L G + +  FN + L +L L GN F G+I    L + +    L L+NN   G +PR   N
Sbjct: 236 LGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVN 295

Query: 401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460
            + L  I +  NH +GPIP +FC+ D L+ LD+S+NN+SG +PSCF P  I  VHLSKN 
Sbjct: 296 FSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNR 355

Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 520
           L G L    FFN S LVT+DL  N   GSIP+W+  LS LS L+L  N+ +GE+ +QLC 
Sbjct: 356 LSGPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCL 414

Query: 521 LNQLQLLDLSNNNLHGPIPPCFDNTTLHES---------YSNSSSPDEQFEIFFSIEG-- 569
           L QL +LD+S+N L GP+P C  N T  +S         Y   S   E+   ++ I G  
Sbjct: 415 LEQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVAYGFISESIEK--AYYEIMGPP 472

Query: 570 --------HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN 621
                      FL     E+ EFTTKN+ Y Y+GKVL+ + G+DLS N  IG IPP+ GN
Sbjct: 473 LVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGN 532

Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681
           L++I ++NLSHNNLTGSIP+TFSNL H+ESLDLS N LNG IP Q  E+ TLEVFSVA+N
Sbjct: 533 LSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHN 592

Query: 682 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-ICRSPATMPEASIGNEQ-DDNLIDMD 739
           NLSG+ PE   QF TF+ES YEGN FLCG PLP  C   A + +    +EQ DD  IDM+
Sbjct: 593 NLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDME 652

Query: 740 SFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVE 775
            F+I+F   Y +V+  I  VLY+N YWRRRW YF+E
Sbjct: 653 FFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIE 688

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	779
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.884	0.689	0.385	2e-118
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.880	0.633	0.383	1.1e-112
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.898	0.785	0.366	1.2e-106
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.881	0.703	0.374	3.1e-106
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.875	0.751	0.366	1.3e-100
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.890	0.742	0.358	1.6e-95
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.820	0.662	0.343	1.4e-85
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.804	0.534	0.309	7.5e-65
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.804	0.548	0.311	4.6e-63
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.803	0.551	0.313	1.2e-61

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 277/719 (38%), Positives = 394/719 (54%)

Query:    76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
             G C   +++EL +++N L G  P C+ ++T LR+LD+SSNQLTG++ S+ L +L S+E L
Sbjct:   253 GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYL 311

Query:   136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 195
              L  N F+   SL  L N S+LK+   ++     E+ E  +   PKFQL  ++L S   +
Sbjct:   312 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEV-EFETSWKPKFQLVVIALRSCNLE 370

Query:   196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 255
                 P FL HQ DL +VDLS  +++G FP+WLLENNTKLE L L N+S    F+LP  +H
Sbjct:   371 KV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH 427

Query:   256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
               L  L+VS N          G +LP L   N + N   G++PSS  NMK ++ LDLS+N
Sbjct:   428 NLLF-LNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHN 486

Query:   316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
                G++P     GC NL  L LS+N L G +F    N T L  + ++ N F G I +   
Sbjct:   487 RFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFR 546

Query:   376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
                SL  L ++NN L G IP W+G    L  + + NN LEG IP     +  LQ+LD+S 
Sbjct:   547 SLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSS 606

Query:   436 NNISGSLPSCFHPLSIKQ---VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
             N +SG +P   H  SI     + L  N L G +      N   ++ LDL  NRL+G++P+
Sbjct:   607 NRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPE 661

Query:   493 WVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL----- 547
             +++    +S L+L  NN  G++                    +G IP C  NT+      
Sbjct:   662 FIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKG 720

Query:   548 HESYS-------NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
              +SY         ++     FE    I+      E  +    EF TK+    Y G  L L
Sbjct:   721 DDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKL 780

Query:   601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
             L G+DLS N+L G IP ++G L  ++ LNLSHNNL+G I  +FS LK+VESLDLS N+L 
Sbjct:   781 LFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQ 840

Query:   661 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSP 719
             G IP QL ++ +L VF+V+YNNLSG +P+ + QF TF   SY GN  LCG  + I C S 
Sbjct:   841 GPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNPLLCGKSIDISCASN 899

Query:   720 ATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI 778
                P  + G E D++ +DM+SF+ +F  +YV ++ GI+  L  +S W R WFY V+ ++
Sbjct:   900 NFHPTDN-GVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 274/715 (38%), Positives = 395/715 (55%)

Query:    76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI-EE 134
             G+C L+ L+EL ++SN L  SLP+C+ N+T LR LD+S+NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   135 LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 194
             L L +N F        L N +RL +F   ++++     ++ S  AP FQL  L LS N  
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKL-SSKVGVIQVQTESSWAPLFQLKMLYLS-NCS 468

Query:   195 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 254
              G     FL HQ DL +VDLSH K+ G FP WL++NNT+L+T+ L  +SL    +LPI  
Sbjct:   469 LGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query:   255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
             H  L+ LD+S+N I   I   IG V P+L   N S N   G+IPSS G MK LQ+LD+S+
Sbjct:   528 HG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSS 586

Query:   315 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 374
             N L G++P     GC +L+ L LSNN LQG +FS++ NLT L  L L+GN F G + + L
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGL 646

Query:   375 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 434
              K  +L  L +++N   G +P W+G ++RL Y+ M  N L+GP P    Q   ++++DIS
Sbjct:   647 LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDIS 705

Query:   435 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
              N+ SGS+P   +  S++++ L  N   G L  G  F  + L  LDL  N  +G I + +
Sbjct:   706 HNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

Query:   495 DGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLH-ESYSN 553
             D  S+L  L+L +N+ +  +                     GPIP CF   +   E    
Sbjct:   765 DQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDR 824

Query:   554 SSS-------------PDEQFEIFFSIE-GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599
             + S             P  Q+    +++ G +   + +   + +F TK+    YQG +L 
Sbjct:   825 TMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILR 884

Query:   600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
              + GLDLS N+L G IP +IG+L  I++LNLS N LTGSIP + S LK +ESLDLSNNKL
Sbjct:   885 YMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKL 944

Query:   660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP---IC 716
             +G IP  L +L +L   +++YNNLSGEIP +K    TF+E SY GN  LCGLP     I 
Sbjct:   945 DGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCIS 1003

Query:   717 RSPATMPEASIGNEQDDNLIDMDSF-FITFTTSYVIVIFGIVIVLYVNSYWRRRW 770
             +     P  S   ++++N  + +    + F  +   V     + L+   Y   RW
Sbjct:  1004 QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRW 1058

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 270/736 (36%), Positives = 404/736 (54%)

Query:    65 LGTNS-SGTLD-QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 122
             L  N  SG+L  QG+C L  LQEL ++ N   G +P C +  + LR+LD+SSN L+G I 
Sbjct:   160 LSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIP 219

Query:   123 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF 182
                +    S+E L L +N F+   SL  +   + LK+F   +     +I E++     + 
Sbjct:   220 YF-ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQS 278

Query:   183 QLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 241
             QL+++ LS  N G     P FL++Q +L  +DLS+  ++G FP WLLENNT+L+ L L N
Sbjct:   279 QLSSIMLSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQN 335

Query:   242 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 301
             +S      LP  + +RL+ LD+S NN    +P  +G +L SL   N S N   G++PSS 
Sbjct:   336 NSFK-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSM 393

Query:   302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
               M+ ++ +DLS N+ +G++P +L  GC +L +L LS+N   G +  ++ + T+L  L +
Sbjct:   394 ARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIM 453

Query:   362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 421
             + N F G+IP++L     L  + L+NN L G IPRWLGN   L+ + + NN L+G IP  
Sbjct:   454 DNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPS 512

Query:   422 FCQLDSLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479
                +  L +LD+S N +SGSLP  S      I  +H   N L G +    ++    L  L
Sbjct:   513 LFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG---LRLL 567

Query:   480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIP 539
             DL  N+L+G+IP +    S +S ++L  NNL G++ V                  +  IP
Sbjct:   568 DLRNNKLSGNIPLFRSTPS-ISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIP 626

Query:   540 PCFDNTTLHES-YSNSSS---PDEQFEIFFSIEG---HQGFLEKQNHEI-----F----E 583
              C  N +     +SN+ S   P      F  I     ++  +      +     F    E
Sbjct:   627 SCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVE 686

Query:   584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 643
             F  K    +Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+GSIP +F
Sbjct:   687 FAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSF 746

Query:   644 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 703
             SNL+ +ESLDLS NKL+G IP QL  L++L VF+V+YNNLSG IP+ K QF TF E SY 
Sbjct:   747 SNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYL 805

Query:   704 GNTFLCGLPLPICRSPATMPEASIGNEQDDN-LIDMDSFFITFTTSYVIVIFGIVIVLYV 762
             GN  LCG P        T+       + D++ L+D+   + +  T+YV V+ G ++ L  
Sbjct:   806 GNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCF 865

Query:   763 NSYWRRRWFYFVEMWI 778
             +S WRR WF  V+ +I
Sbjct:   866 DSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 272/726 (37%), Positives = 387/726 (53%)

Query:    78 CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 137
             C + +L++L +  N   G LP C+ N+  LR+LD+SSNQL+G++ +S    L S+E L L
Sbjct:   257 CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSL 315

Query:   138 SNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEI-TESHSLIAPKFQLNTLSLS-SNYGD 195
             S+N F+   SL PL N ++LK+F   +     ++ TES+ L  PKFQL   +L   + G 
Sbjct:   316 SDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWL--PKFQLTVAALPFCSLGK 373

Query:   196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 255
                 P FL +Q +L  VDLS  +++G+ P WLLENN +L+ L L N+S    F++P   H
Sbjct:   374 ---IPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVH 429

Query:   256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
             K L+ LD S N+I G +P  IG VLP L   N S N   G++PSS G M  +  LDLS N
Sbjct:   430 K-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYN 488

Query:   316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
             + +GE+P  L  GC +L  L LS+N+  G +      LT+L  L++  N F GEI   L 
Sbjct:   489 NFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLR 548

Query:   376 KCSSLEGLYLNNNSLLGKIPRWLG-NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 434
                +L     +NN L G I   +  + + L  +++ NN LEG +P     +  L  LD+S
Sbjct:   549 TLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLS 608

Query:   435 DNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
              N +SG LPS        IK + L  N   G L      N      LDL  N+L+GSIP 
Sbjct:   609 GNLLSGDLPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENA---YILDLRNNKLSGSIPQ 664

Query:   493 WVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDN--TTLHES 550
             +V+    ++ L+ G NNL G +                    +G IPPC ++  T L E 
Sbjct:   665 FVNTGKMITLLLRG-NNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEG 723

Query:   551 YSNSSSPDE-------QFEIF---FSIEGHQGFLEKQNHEI-FEFTTKNIAYIYQGKVLS 599
                S    E       Q E +   F ++    + +     +  EF  K     + G  L 
Sbjct:   724 IGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLD 783

Query:   600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
              + GLDLS N+L G IP ++G+L++++ LNLS N L+ SIP+ FS LK +ESLDLS N L
Sbjct:   784 YMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNML 843

Query:   660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-ICRS 718
              G IPHQL  L +L VF+V++NNLSG IP+   QF TFN++SY GN  LCG P    C  
Sbjct:   844 QGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEG 902

Query:   719 PATMPEASIGNEQ---DDN---LIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFY 772
                  EA  G E+   DD+    IDM   + T  ++Y I + GI++++  +  WRR W  
Sbjct:   903 KKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLC 962

Query:   773 FVEMWI 778
              V+ +I
Sbjct:   963 IVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 260/709 (36%), Positives = 374/709 (52%)

Query:    75 QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 134
             Q  C + +LQEL +   +  G LP C  N+  LR LD+SSNQLTG+I  S    L S+E 
Sbjct:   214 QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEY 272

Query:   135 LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 194
             L LS+N F+   SL PL N ++LK+F   + +   ++ +  S   P FQL+ L L     
Sbjct:   273 LSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV-KIESTWQPLFQLSVLVLRLCSL 331

Query:   195 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 254
             +    P FL +Q +L  VDLS  +++G  P WLLENN +LE L L N+S    F++P   
Sbjct:   332 EKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSV 388

Query:   255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
             H  L+ LD S NNI G  P   G VLP+L   N S N   G+ PSS G M  +  LDLS 
Sbjct:   389 HN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSY 447

Query:   315 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 374
             N+L+GE+P+     C +L  L LS+N   GH   R  N T+L  L++  N F G+I   L
Sbjct:   448 NNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGL 507

Query:   375 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 434
                  L  L ++NN L G++P  L     L ++ +  N L G +P     LD+  +L + 
Sbjct:   508 LTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN--VLFLH 564

Query:   435 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
             +NN +G +P  F   SI+ + L  N L G + +  F +   +  L L  N L G IP  +
Sbjct:   565 NNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYIPSTL 621

Query:   495 DGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNS 554
                S++  L L  N L G +                    +  +    ++  L   +  S
Sbjct:   622 CEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAVALESFYL--GFYKS 677

Query:   555 SSPDEQFEIFFS--IEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 612
             +   E F + +S   E    F  KQ ++ +       A+ +    L+ + GLDLS N+L 
Sbjct:   678 TFVVENFRLDYSNYFEIDVKFATKQRYDSYIG-----AFQFSEGTLNSMYGLDLSSNELS 732

Query:   613 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 672
             G IP ++G+L +++ LNLSHN L+  IP +FS L+ +ESLDLS N L G IPHQL  L +
Sbjct:   733 GVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTS 792

Query:   673 LEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSPATMPEASIGNEQ 731
             L +F+V+YNNLSG IP+ K QF TF+E+SY GN  LCG P    C +     E + G E+
Sbjct:   793 LAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEE 851

Query:   732 DDN--LIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWI 778
             DD    IDM  F+ +   +YV  + GI++++ V+  WRR W   V+ +I
Sbjct:   852 DDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 267/745 (35%), Positives = 376/745 (50%)

Query:    65 LGTNS-SGTLD-QGLCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILDVSSNQLTGSI 121
             L +N  S +++ Q L +L++L+ L +A N + G +P      + +LR LD+  N   G I
Sbjct:   203 LSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQI 262

Query:   122 SSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNAENN-EIKAEITESHSLI 178
                 L  L  +  L LS+N     +P S   L +   L +  ++NN +    +    +L 
Sbjct:   263 PLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSL--SDNNFDGSFSLNPLTNLT 319

Query:   179 APKFQ--LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLET 236
               KF   L   SL          P FL +Q  L  VDLS   ++G  P WLL NN +LE 
Sbjct:   320 NLKFVVVLRFCSLEK-------IPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEV 372

Query:   237 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS 296
             L L N+S    F +P   H  L+  D S NNI G  P K+   LP+L   N S N   G 
Sbjct:   373 LQLQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGY 429

Query:   297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 356
              P+S G MK +  LDLS N+ +G++P     GCV++ FL LS+N   G    R  N  +L
Sbjct:   430 FPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSL 489

Query:   357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 416
               L+++ N F G I   LS  + L  L ++NN L G IPRWL     L Y+++ NN LEG
Sbjct:   490 DVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEG 549

Query:   417 PIPVEFCQLDSLQILDISDNNISGSLPSCFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSS 475
              IP     +  L  LD+S N  SG+LPS     L I  + L  N   G +   T     S
Sbjct:   550 TIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIP-DTLLK--S 605

Query:   476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXH 535
             +  LDL  N+L+GSIP + D    ++ L+L  NNL G +                    +
Sbjct:   606 VQILDLRNNKLSGSIPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLN 664

Query:   536 GPIPPCFDNTT---LHESYSNSSSPDEQFEIFFSIEGHQG-FL-EK--------QNHEIF 582
             G IP C  N +   L E     + P    +    +E ++  FL +K        Q  EI 
Sbjct:   665 GVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEI- 723

Query:   583 EFTTKNIAYIYQGK------VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636
             +F  K     Y G+      +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L 
Sbjct:   724 KFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLL 783

Query:   637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFAT 696
             GSIPS+FS L  VESLDLS+N L G IP  L  L +L VF V+ NNLSG IP+ + QF T
Sbjct:   784 GSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNT 842

Query:   697 FNESSYEGNTFLCGLPLP-ICRSPATMPEASIGNEQDDN--LIDMDSFFITFTTSYVIVI 753
             F E SY GN  LCG P    C +  +  EA  G E++D+   IDM  F+ +  + YV  +
Sbjct:   843 FEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTAL 902

Query:   754 FGIVIVLYVNSYWRRRWFYFVEMWI 778
              G+++++  +  WRR W   V+ +I
Sbjct:   903 IGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 230/669 (34%), Positives = 343/669 (51%)

Query:    72 TLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 131
             ++  G+C L ++QEL ++ N L G LP C+ ++T LR+LD+SSN+LTG++ SS L  L S
Sbjct:   235 SIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQS 293

Query:   132 IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 191
             +E L L +N F+   S   L N S L +    +     ++  S S   PKFQL+ ++L S
Sbjct:   294 LEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRS 352

Query:   192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 251
                +    P FL HQ DL +VDLS   ++G+ P+WLL NNTKL+ L L N+ L   F++P
Sbjct:   353 CNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIP 409

Query:   252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 311
               +H  L  LDVS N+     P  IG + P L   N S N    ++PSS GNM  +Q +D
Sbjct:   410 KSAHNLLF-LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMD 468

Query:   312 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 371
             LS N   G +P     GC ++  L LS+N L G +F  + N TN+  L ++ N F G+I 
Sbjct:   469 LSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIG 528

Query:   372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 431
             Q L    +LE L ++NN+L G IP W+G L  L  +++ +N L+G IP+      SLQ+L
Sbjct:   529 QGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLL 588

Query:   432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 491
             D+S N++SG +P      +   + L  N L G +      N      LDL  NR +G IP
Sbjct:   589 DLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVE---ILDLRNNRFSGKIP 645

Query:   492 DWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESY 551
             ++++ +  +S L+L  NN  G++                    +G IP C  NT+     
Sbjct:   646 EFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFG- 703

Query:   552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL--LSGLDLSC- 608
                +S D  F I F  +   GF     H+ F  + KN   IY   +L+L  LS +D    
Sbjct:   704 KECTSYDYDFGISFPSDVFNGF---SLHQDFS-SNKN-GGIYFKSLLTLDPLS-MDYKAA 757

Query:   609 --NKL---IGHIPPQI--GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661
                K+     H       GNL  +  ++LS N L+G IP  F  L  + +L+LS+N L+G
Sbjct:   758 TQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSG 817

Query:   662 KIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPAT 721
              IP  +  ++ +E F +++N L G IP    +  + +      N  L G+ +P  R   T
Sbjct:   818 VIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNN-LSGV-IPQGRQFNT 875

Query:   722 MP-EASIGN 729
                E+  GN
Sbjct:   876 FDAESYFGN 884

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 7.5e-65, P = 7.5e-65
 Identities = 208/672 (30%), Positives = 308/672 (45%)

Query:    70 SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
             SG + + +C    L  +    N+L G +P C+ ++  L++   + N LTGSI  S +  L
Sbjct:   157 SGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTL 215

Query:   130 TSIEELMLSNNYF--QIPISLEPLFNYSRLKIF-NAENNEIKAEITESHSLIAPKFQLNT 186
              ++ +L LS N    +IP     L N   L +  N    +I AEI    SL+        
Sbjct:   216 ANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQ------- 268

Query:   187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
             L L  N   G I P  L +   L+ + +   K+    P+ L    T+L  L L  + L G
Sbjct:   269 LELYDNQLTGKI-PAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVG 326

Query:   247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
             P    I   + L  L + +NN  G  P  I + L +L V     N + G +P+  G +  
Sbjct:   327 PISEEIGFLESLEVLTLHSNNFTGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTN 385

Query:   307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
             L+ L   +N LTG IP  ++  C  L+ L LS+N + G +  R F   NL ++ +  N F
Sbjct:   386 LRNLSAHDNLLTGPIPSSIS-NCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHF 443

Query:   367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
              GEIP  +  CS+LE L + +N+L G +   +G L +L+ + +  N L GPIP E   L 
Sbjct:   444 TGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLK 503

Query:   427 SLQILDISDNNISGSLPSCFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
              L IL +  N  +G +P     L++ Q + +  N L G +     F+   L  LDLS N+
Sbjct:   504 DLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNK 562

Query:   486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIP----PC 541
              +G IP     L  L++L L  N   G +                     G IP      
Sbjct:   563 FSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLAS 622

Query:   542 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 601
               N  L+ ++SN+        +  +I    G LE     + E    N   ++ G +   L
Sbjct:   623 LKNMQLYLNFSNNL-------LTGTIPKELGKLEM----VQEIDLSN--NLFSGSIPRSL 669

Query:   602 SG------LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
                     LD S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDL
Sbjct:   670 QACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDL 729

Query:   655 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714
             S+N L G+IP  L  L TL+   +A NNL G +PE    F   N S   GNT LCG   P
Sbjct:   730 SSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKP 788

Query:   715 ICRSPATMPEAS 726
             +   P T+ + S
Sbjct:   789 L--KPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 4.6e-63, P = 4.6e-63
 Identities = 204/655 (31%), Positives = 313/655 (47%)

Query:    85 ELYIASNDLRGSLPW-CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 143
             E+ ++ + L G + +    ++ SL +L +S N    + +S  L+ LT +  L LS++   
Sbjct:    82 EINLSGSGLSGIVSFNAFTSLDSLSVLKLSENFFVLNSTSLLLLPLT-LTHLELSSSGL- 139

Query:   144 IPISLEPLFN-YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG--DGFIFP 200
             I    E  F+ YS L       N    ++     L + K Q   LS ++  G   G   P
Sbjct:   140 IGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIP 199

Query:   201 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ 260
               L     + Y+D S   ++G   + L+ N T L++L L  ++  G         K L+ 
Sbjct:   200 --LSSCVSMTYLDFSGNSISGYISDSLI-NCTNLKSLNLSYNNFDGQIPKSFGELKLLQS 256

Query:   261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
             LD+S+N + G IP +IGD   SL     S N   G IP S  +  +LQ LDLSNN+++G 
Sbjct:   257 LDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGP 316

Query:   321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK-CSS 379
              P  +     +LQ L LSNN + G   +      +L+      NRF G IP  L    +S
Sbjct:   317 FPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAAS 376

Query:   380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
             LE L L +N + G+IP  +   + L+ I +  N+L G IP E   L  L+      NNI+
Sbjct:   377 LEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIA 436

Query:   440 GSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
             G +P     L ++K + L+ N L G++    FFNCS++  +  + NRL G +P     LS
Sbjct:   437 GEIPPEIGKLQNLKDLILNNNQLTGEIPP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILS 495

Query:   499 QLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNSSSPD 558
             +L+ L LG+NN  GE+                     G IPP        ++ S   S +
Sbjct:   496 RLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGN 555

Query:   559 EQ-F--EIFFSIEGHQGFLE------KQNHEIFEFTTKNIAYIYQGKVLSLLSG------ 603
                F   +  S +G  G +E      ++  +I    + +   +Y G +LSL +       
Sbjct:   556 TMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEY 615

Query:   604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
             LDLS N+L G IP +IG +  +Q L LSHN L+G IP T   LK++   D S+N+L G+I
Sbjct:   616 LDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQI 675

Query:   664 PHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRS 718
             P     L  L    ++ N L+G IP+ + Q +T   + Y  N  LCG+PLP C++
Sbjct:   676 PESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECKN 729

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.2e-61, P = 1.2e-61
 Identities = 207/661 (31%), Positives = 311/661 (47%)

Query:    64 TLGTNS-SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 122
             +L +NS +GT+   L     L  +++  N L G LP  M N+TSL + +V+ N+L+G I 
Sbjct:    98 SLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEI- 156

Query:   123 SSPLVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 180
               P+   +S++ L +S+N F  QIP  L    N ++L++ N   N++  EI  S   +  
Sbjct:   157 --PVGLPSSLQFLDISSNTFSGQIPSGLA---NLTQLQLLNLSYNQLTGEIPASLGNLQ- 210

Query:   181 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 240
                L  L L  N   G + P  + +   L ++  S  ++ G  P        KLE L L 
Sbjct:   211 --SLQYLWLDFNLLQGTL-PSAISNCSSLVHLSASENEIGGVIPA-AYGALPKLEVLSLS 266

Query:   241 NDSLAG--PFRLPIHSHKRLRQLDVS--NNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS 296
             N++ +G  PF L  ++   + QL  +  ++ +R   P    +    L V +   N + G 
Sbjct:   267 NNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVR---PETTANCRTGLQVLDLQENRISGR 323

Query:   297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 356
              P    N+  L+ LD+S N  +GEIP  +      L+ L L+NN+L G +        +L
Sbjct:   324 FPLWLTNILSLKNLDVSGNLFSGEIPPDIG-NLKRLEELKLANNSLTGEIPVEIKQCGSL 382

Query:   357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 416
               L  EGN   G+IP+ L    +L+ L L  NS  G +P  + NL +L+ + +  N+L G
Sbjct:   383 DVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNG 442

Query:   417 PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSS 475
               PVE   L SL  LD+S N  SG++P     LS +  ++LS N   G++   +  N   
Sbjct:   443 SFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIP-ASVGNLFK 501

Query:   476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXH 535
             L  LDLS   ++G +P  + GL  +  + L  NN  G V                     
Sbjct:   502 LTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFS 561

Query:   536 GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 595
             G IP  F    L  S S S +      I  SI    G       E+ E  +  +      
Sbjct:   562 GEIPQTFGFLRLLVSLSLSDN-----HISGSIPPEIGNCSAL--EVLELRSNRLMGHIPA 614

Query:   596 KVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 653
              +  L  L  LDL  N L G IPP+I   + + +L+L HN+L+G IP +FS L ++  +D
Sbjct:   615 DLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMD 674

Query:   654 LSNNKLNGKIPHQLVELKT-LEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712
             LS N L G+IP  L  + + L  F+V+ NNL GEIP         N S + GNT LCG P
Sbjct:   675 LSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCGKP 733

Query:   713 L 713
             L
Sbjct:   734 L 734

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	779
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  225 bits (576), Expect = 2e-62
 Identities = 191/621 (30%), Positives = 293/621 (47%), Gaps = 73/621 (11%)

Query: 103 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
           N + +  +D+S   ++G ISS+ +  L  I+ + LSNN    PI  +     S L+  N 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 163 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 222
            NN     I            L TL LS+N   G I P  +     L+ +DL    + G+
Sbjct: 126 SNNNFTGSIPRGSI-----PNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGK 179

Query: 223 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 282
            PN L  N T LE L L ++ L G     +   K L+ + +  NN+ G IP +IG  L S
Sbjct: 180 IPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTS 237

Query: 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
           L   +   N L G IPSS GN+K LQ L L  N L+G IP  +                 
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI----------------- 280

Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
                   F+L  L  L L  N   GEIP+ + +  +LE L+L +N+  GKIP  L +L 
Sbjct: 281 --------FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNM 460
           RLQ + + +N   G IP    + ++L +LD+S NN++G +P   C      K +  S N 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NS 391

Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 520
           L G++ + +   C SL  + L  N  +G +P     L  +  L + +NNL+G ++ +  +
Sbjct: 392 LEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 521 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 580
           +  LQ+L L+ N   G +P  F +  L                          L+   ++
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLEN------------------------LDLSRNQ 486

Query: 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 640
                 + +        LS L  L LS NKL G IP ++ +  ++ +L+LSHN L+G IP
Sbjct: 487 FSGAVPRKLG------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 641 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNES 700
           ++FS +  +  LDLS N+L+G+IP  L  +++L   ++++N+L G +P   A F   N S
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINAS 599

Query: 701 SYEGNTFLCG----LPLPICR 717
           +  GN  LCG      LP C+
Sbjct: 600 AVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  211 bits (538), Expect = 2e-57
 Identities = 188/603 (31%), Positives = 281/603 (46%), Gaps = 116/603 (19%)

Query: 66  GTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMT-SLRILDVSSNQLTGSISSS 124
           G N SG +   +  L ++Q + +++N L G +P  +   + SLR L++S+N  TGSI   
Sbjct: 78  GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG 137

Query: 125 PLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQL 184
            + +L   E L LSNN     I  + + ++S LK+ +   N +  +I  S   +     L
Sbjct: 138 SIPNL---ETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSL 190

Query: 185 NTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL 244
             L+L+SN   G I P+ L     L+++ L +  ++GE P                    
Sbjct: 191 EFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPY------------------- 230

Query: 245 AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNM 304
                  I     L  LD+  NN+ G IP  +G++    Y+F    N L G IP S  ++
Sbjct: 231 ------EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF-LYQNKLSGPIPPSIFSL 283

Query: 305 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGN 364
           + L  LDLS+N L+GEIPE L +   NL+ L L +NN  G +     +L  LQ LQL  N
Sbjct: 284 QKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL---GNLTRL----------------- 404
           +F GEIP++L K ++L  L L+ N+L G+IP  L   GNL +L                 
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 405 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 459
               + + + +N   G +P EF +L  +  LDIS+NN+ G + S    + S++ + L++N
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 519
              G L     F    L  LDLS N+ +G++P  +  LS+L  L L  N L GE+  +L 
Sbjct: 463 KFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 520 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579
              +L  LDLS+N L G IP  F           S  P                      
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASF-----------SEMP---------------------- 547

Query: 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI 639
                            VLS L   DLS N+L G IP  +GN+  +  +N+SHN+L GS+
Sbjct: 548 -----------------VLSQL---DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 640 PST 642
           PST
Sbjct: 588 PST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  171 bits (434), Expect = 6e-44
 Identities = 148/440 (33%), Positives = 222/440 (50%), Gaps = 47/440 (10%)

Query: 59  SLSYYTLGTNS-SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQL 117
           SL + TL +N   G + + L  +  L+ +Y+  N+L G +P+ +  +TSL  LD+  N L
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 118 TGSISSSPLVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESH 175
           TG I SS L +L +++ L L  N     IP S+   F+  +L   +  +N +  EI E  
Sbjct: 249 TGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPE-- 302

Query: 176 SLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE 235
            L+     L  L L SN   G I P  L     L+ + L   K +GE P  L ++N    
Sbjct: 303 -LVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN--- 357

Query: 236 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNAL 293
                                 L  LD+S NN+ G IP  +     L  L +F+NS   L
Sbjct: 358 ----------------------LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS---L 392

Query: 294 DGSIPSSFGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQGHLFSRNFN 352
           +G IP S G  + L+ + L +N  +GE+P E   +  V   FL +SNNNLQG + SR ++
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY--FLDISNNNLQGRINSRKWD 450

Query: 353 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412
           + +LQ L L  N+F G +P S      LE L L+ N   G +PR LG+L+ L  + +  N
Sbjct: 451 MPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 413 HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHGQLKRGTFF 471
            L G IP E      L  LD+S N +SG +P+ F  + +  Q+ LS+N L G++ +    
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-NLG 568

Query: 472 NCSSLVTLDLSYNRLNGSIP 491
           N  SLV +++S+N L+GS+P
Sbjct: 569 NVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (374), Expect = 1e-36
 Identities = 118/383 (30%), Positives = 173/383 (45%), Gaps = 61/383 (15%)

Query: 312 LSNNHLTGEIPEHLAVGCVN---LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 368
           LSN + + ++     + C N   +  + LS  N+ G + S  F L  +Q + L  N+  G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 369 EIPQSLSK-CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 427
            IP  +    SSL  L L+NN+  G IPR  G++  L+ + + NN L G IP +     S
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           L++LD+  N + G +P                         +  N +SL  L L+ N+L 
Sbjct: 166 LKVLDLGGNVLVGKIP------------------------NSLTNLTSLEFLTLASNQLV 201

Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 547
           G IP  +  +  L  + LG+NNL GE+  ++  L  L  LDL  NNL GPIP    N   
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK- 260

Query: 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQ-NHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                     + Q+   +     Q  L       IF                  L  LDL
Sbjct: 261 ----------NLQYLFLY-----QNKLSGPIPPSIFSLQK--------------LISLDL 291

Query: 607 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 666
           S N L G IP  +  L  ++ L+L  NN TG IP   ++L  ++ L L +NK +G+IP  
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351

Query: 667 LVELKTLEVFSVAYNNLSGEIPE 689
           L +   L V  ++ NNL+GEIPE
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (354), Expect = 3e-34
 Identities = 110/355 (30%), Positives = 168/355 (47%), Gaps = 71/355 (20%)

Query: 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
           S N+   +L + N +     W  +  N          S+  S++   L+  ++ GKI   
Sbjct: 40  SINDPLKYLSNWNSSADVCLWQGITCNNS--------SRVVSID---LSGKNISGKISSA 88

Query: 398 LGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHL 456
           +  L  +Q I + NN L GPIP + F    SL+ L++S+NN +GS+P    P  ++ + L
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN-LETLDL 147

Query: 457 SKNMLHGQLKR--GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
           S NML G++    G+F   SSL  LDL  N L G IP+ +  L+ L  L L  N L G++
Sbjct: 148 SNNMLSGEIPNDIGSF---SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 515 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574
             +L ++  L+ + L  NNL G                         EI + I G     
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSG-------------------------EIPYEIGG----- 234

Query: 575 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 634
                                  L+ L+ LDL  N L G IP  +GNL  +Q L L  N 
Sbjct: 235 -----------------------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 635 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
           L+G IP +  +L+ + SLDLS+N L+G+IP  +++L+ LE+  +  NN +G+IP 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.7 bits (207), Expect = 1e-16
 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 27/175 (15%)

Query: 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
            + GL L    L G IP  I  L  +Q++NLS N++ G+IP +  ++  +E LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKA----QFATFNESSYEGNTFLCGLP-LP 714
           NG IP  L +L +L + ++  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 715 ICRSPATMPEASIGNEQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRR 769
            C  P     A IG              I F  S       + +V+    +W+RR
Sbjct: 536 AC-GPHLSVGAKIG--------------IAFGVSVAF----LFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 8e-12
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 237 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS 296
           L L N  L G     I   + L+ +++S N+IRG+IP  +G +  SL V + S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
           IP S G +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 29/151 (19%)

Query: 322 PEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 381
            +H   G  + QF     ++ +G  F     L N      +G R  G IP  +SK   L+
Sbjct: 400 QQHPWSG-ADCQF-----DSTKGKWFIDGLGLDN------QGLR--GFIPNDISKLRHLQ 445

Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 441
            + L+ NS+ G IP  LG++T L+ + +  N   G IP    QL SL+IL+++ N++SG 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 442 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 472
           +P+                L G+L     FN
Sbjct: 506 VPAA---------------LGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 26/114 (22%)

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
           L + N  +RG IP  I   L  L   N S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 374
           IPE L                           LT+L+ L L GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 9e-10
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 24/104 (23%)

Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
           N  L G IP +  +L  LQ +++S N+I G++P                         + 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SL 462

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
            + +SL  LDLSYN  NGSIP+ +  L+ L  L L  N+L G V
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query: 380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
           ++GL L+N  L G IP  +  L  LQ I +  N + G IP     + SL++LD+S N+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 440 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 497
           GS+P                   GQL        +SL  L+L+ N L+G +P  + G 
Sbjct: 480 GSIPESL----------------GQL--------TSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 71  GTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130
           G +   +  L HLQ + ++ N +RG++P  + ++TSL +LD+S N   GSI  S L  LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLT 490

Query: 131 SIEELMLSNNYF--QIPISL--EPLFNYSRLKIFNAENN 165
           S+  L L+ N    ++P +L    L        FN  +N
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLL----HRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 604 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
           LDLS N+L   IP      L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 60/165 (36%)

Query: 494 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 553
           +DGL       L +  L G +   + +L  LQ ++LS N++ G IPP   +         
Sbjct: 420 IDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------- 464

Query: 554 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 613
                                                       ++ L  LDLS N   G
Sbjct: 465 --------------------------------------------ITSLEVLDLSYNSFNG 480

Query: 614 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTF-SNLKHVESLDLSNN 657
            IP  +G LT ++ LNL+ N+L+G +P+     L H  S + ++N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT-RLQYIIMP 410
           NL  L  L L  NR    I   L + ++L  L L+NN++   IP  +G L   L+ + + 
Sbjct: 91  NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLS 148

Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
           +N +E  +P     L +L+ LD+S N++S       +  ++  + LS N +         
Sbjct: 149 DNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI--SDLPPEI 205

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530
              S+L  LDLS N +   +   +  L  LS L L +N LE      +  L+ L+ LDLS
Sbjct: 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLS 263

Query: 531 NNNL 534
           NN +
Sbjct: 264 NNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 454 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
           + LS N L   +  G F    +L  LDLS N L    P+   GL  L  L L  NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 683
            +++L+LS+N LT      F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 28/60 (46%)

Query: 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL 534
           +L +LDLS NRL         GL  L  L L  NNL          L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
           NL+ L L  NR       +     +L+ L L+ N+L    P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
           L +++LS N + G+IP  +  ++ L  L L +N+  G +   L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 536 GPIPPCFDNTTLHESYSN 553
           G +P       LH +  N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538
           L L    L G IP+ +  L  L  + L  N++ G +   L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 539 P 539
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 44/217 (20%)

Query: 307 LQILDLSNNHLTGEIPEHLAV------GCVNLQFLALSNNNLQGHL------FSRNFNLT 354
           L+ L LS N  TG IP  L            LQ L LS+N L            R+ +L 
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 355 NLQWLQ----LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL----TRLQY 406
            L+         G R + +  + L    +LE L L  N L G     L         L+ 
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLP--PALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 407 IIMPNNHLEGP----IPVEFCQLDSLQILDISDNNI----SGSLPSCF-HPLSIKQVHLS 457
           + + NN +       +        +L++LD+++N +    + +L        S++ ++L 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 458 KNM--------LHGQLKRGTFFNCSSLVTLDLSYNRL 486
            N         L   L         SL+TL LS N +
Sbjct: 230 DNNLTDAGAAALASALLSPN----ISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEG 363
           L+ LDLSNN LT  IP+    G  NL+ L LS NNL       FS    L +L+ L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 364 NRF 366
           N  
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 438
           +L+ L L+NN L          L  L+ + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
           SL + NN +  +      +F  +  L++LDLS N+LT  I      G  +L+ L LS NN
Sbjct: 4   SLDLSNNRLTVIP---DGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 342 L 342
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 23  HFDMDFTRIALNTSFIALNTSFLQIIS-ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLV 81
               + + +   T+  +L+     I     +  L   +L    L  N   +L   L +L 
Sbjct: 104 RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP 163

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
           +L+ L ++ NDL   LP  ++N+++L  LD+S N++  S     +  L+++EEL LSNN 
Sbjct: 164 NLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNN- 219

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
             I   L  L N   L      NN+++         I     L TL LS+N
Sbjct: 220 -SIIELLSSLSNLKNLSGLELSNNKLEDLPE----SIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 60/284 (21%), Positives = 93/284 (32%), Gaps = 98/284 (34%)

Query: 428 LQILDISDNNIS----GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
           LQ LD+SDN +     G L S     S++++ L+ N L     RG       L  L  + 
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG---DRGLRLLAKGLKDLPPA- 138

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ----LQLLDLSNNNLHGPIP 539
                           L  L+LG N LEG     L +  +    L+ L+L+NN +     
Sbjct: 139 ----------------LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI----- 177

Query: 540 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG-KVL 598
                                        G  G                I  + +G K  
Sbjct: 178 -----------------------------GDAG----------------IRALAEGLKAN 192

Query: 599 SLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN-----L 646
             L  LDL+ N L       +      + +L   + LNL  NNLT +  +  ++      
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSL---EVLNLGDNNLTDAGAAALASALLSPN 249

Query: 647 KHVESLDLSNNKLNGKIPHQLVEL----KTLEVFSVAYNNLSGE 686
             + +L LS N +       L E+    ++L    +  N    E
Sbjct: 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 32/184 (17%)

Query: 365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR---LQYIIMPNNHLEGPIPVE 421
           R +  + Q L+K   L+ L L++N+L       L +L R   LQ + + NN L       
Sbjct: 68  RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD----- 122

Query: 422 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVT 478
                  + L +    ++  L      L  +++ L +N L G               L  
Sbjct: 123 -------RGLRL----LAKGLKDLPPAL--EKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 479 LDLSYNRLNGS-IPDWVDGL---SQLSHLILGHNNLEGEVSVQLCE----LNQLQLLDLS 530
           L+L+ N +  + I    +GL     L  L L +N L  E +  L E    L  L++L+L 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 531 NNNL 534
           +NNL
Sbjct: 230 DNNL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 331 NLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 389
           NL+ L LSNN L   +    F  L NL+ L L GN      P++ S   SL  L L+ N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 390 L 390
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	779
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
PLN03150	623	hypothetical protein; Provisional	99.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
PLN03150	623	hypothetical protein; Provisional	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG4341	483	consensus F-box protein containing LRR [General fu	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
PRK15386	426	type III secretion protein GogB; Provisional	97.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.1
KOG4308	478	consensus LRR-containing protein [Function unknown	94.47
KOG4308	478	consensus LRR-containing protein [Function unknown	94.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.89
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.33
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.3
smart00370	26	LRR Leucine-rich repeats, outliers.	89.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.24
smart00370	26	LRR Leucine-rich repeats, outliers.	89.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.51
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	87.46
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.03
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.1

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.8e-59  Score=557.82  Aligned_cols=542  Identities=32%  Similarity=0.487  Sum_probs=445.8

Q ss_pred             CCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEE
Q 004005           81 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF  160 (779)
Q Consensus        81 ~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L  160 (779)
                      .+++.|+|++|.+.+..+..|..+++|++|++++|++.+.+|...+.++++|++|++++|.+++.++.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            46777777777777777777777888888888888777777774555777888888887777654442   334555555


Q ss_pred             EccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcC
Q 004005          161 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV  240 (779)
Q Consensus       161 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  240 (779)
                      ++++|.+                            ++..|..++.+++|++|++++|.+.+.+|..+ .++++|++|+++
T Consensus       146 ~Ls~n~~----------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~  196 (968)
T PLN00113        146 DLSNNML----------------------------SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLA  196 (968)
T ss_pred             ECcCCcc----------------------------cccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeecc
Confidence            5554443                            33445666677778888888887777777765 577888888888


Q ss_pred             CCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccc
Q 004005          241 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE  320 (779)
Q Consensus       241 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~  320 (779)
                      +|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|+.|++++|.+.+.
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            88877777777778888888888888887777766654 67888888888888877888888888888888888888777


Q ss_pred             cchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccC
Q 004005          321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN  400 (779)
Q Consensus       321 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  400 (779)
                      +|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..
T Consensus       276 ~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        276 IPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             CchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            776664 4788888888888887777777778888888888888888777888888888888888888888778888888


Q ss_pred             CCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEE
Q 004005          401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL  479 (779)
Q Consensus       401 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  479 (779)
                      +++|+.|++++|++.+..|..+..+++|+.|++++|++.+..|..+. +++|+.|++++|.+.+.++.. |..++.|+.|
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L  433 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFL  433 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEE
Confidence            88888888888888877888888888888888888888777766544 678888888888887777765 8899999999


Q ss_pred             eccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCc
Q 004005          480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDE  559 (779)
Q Consensus       480 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  559 (779)
                      ++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..++             
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-------------  499 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-------------  499 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-------------
Confidence            999999999999888899999999999999998877755 468999999999999988887776543             


Q ss_pred             chhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCC
Q 004005          560 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI  639 (779)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  639 (779)
                                                              +|++|++++|++.+.+|..+..+++|++|+|++|.+++.+
T Consensus       500 ----------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        500 ----------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             ----------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence                                                    7999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005          640 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       640 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      |..|.++++|+.|+|++|++++.+|..+..+++|+.+++++|++++.+|.. +.+.++....+.||+..|+.+
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999975 678888888999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-55  Score=527.40  Aligned_cols=547  Identities=31%  Similarity=0.441  Sum_probs=352.3

Q ss_pred             cccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhc-CCCCCCEEEcCCCccc
Q 004005           40 LNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSNQLT  118 (779)
Q Consensus        40 ~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~-~l~~L~~L~L~~n~l~  118 (779)
                      |.+..+.    ...+++.|+++++.+    .+.++.++..+++|++|+|++|++.+.+|..+. .+++|++|++++|++.
T Consensus        60 w~gv~c~----~~~~v~~L~L~~~~i----~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~  131 (968)
T PLN00113         60 WQGITCN----NSSRVVSIDLSGKNI----SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT  131 (968)
T ss_pred             CcceecC----CCCcEEEEEecCCCc----cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc
Confidence            5555443    234788888888887    456677788888888888888888777776654 8888888888888887


Q ss_pred             CCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCC
Q 004005          119 GSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI  198 (779)
Q Consensus       119 ~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  198 (779)
                      +.+|.   +.+++|++|++++|.+++..+ ..++.+++|++|++++|.+.+..+..   +....+|+.|++ +.+.+.+.
T Consensus       132 ~~~p~---~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L-~~n~l~~~  203 (968)
T PLN00113        132 GSIPR---GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEFLTL-ASNQLVGQ  203 (968)
T ss_pred             cccCc---cccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChh---hhhCcCCCeeec-cCCCCcCc
Confidence            76664   457888888888888875444 35777888888888877665432221   122234444444 33333344


Q ss_pred             CchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccc
Q 004005          199 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD  278 (779)
Q Consensus       199 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  278 (779)
                      .|..+..+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..
T Consensus       204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  282 (968)
T PLN00113        204 IPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS  282 (968)
T ss_pred             CChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence            44444455555555555555544444443 34455555555555544444444444555555555555444444433332


Q ss_pred             cCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCE
Q 004005          279 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW  358 (779)
Q Consensus       279 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  358 (779)
                       +++|++|++++|.+.+.+|..+.++++|+.|++++|.+                         .+..+..+..+++|+.
T Consensus       283 -l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-------------------------~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        283 -LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-------------------------TGKIPVALTSLPRLQV  336 (968)
T ss_pred             -ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc-------------------------CCcCChhHhcCCCCCE
Confidence             34444444444444444444444444444444444444                         4444444444444555


Q ss_pred             EEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcC
Q 004005          359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI  438 (779)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  438 (779)
                      |++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++
T Consensus       337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l  416 (968)
T PLN00113        337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF  416 (968)
T ss_pred             EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence            55555544444444444444555555555544444444444444555555555554444444444455555555555554


Q ss_pred             ccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccc
Q 004005          439 SGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ  517 (779)
Q Consensus       439 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  517 (779)
                      ++..|..+. ++.|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+..|..+ +.++|+.|++++|++++..|..
T Consensus       417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~  494 (968)
T PLN00113        417 SGELPSEFTKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRK  494 (968)
T ss_pred             eeECChhHhcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChh
Confidence            444433332 444555555555554544444 5678889999999999888777765 4588999999999999888888


Q ss_pred             ccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecccc
Q 004005          518 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV  597 (779)
Q Consensus       518 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (779)
                      +..+++|+.|++++|.+.+.+|..+..++                                                   
T Consensus       495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---------------------------------------------------  523 (968)
T PLN00113        495 LGSLSELMQLKLSENKLSGEIPDELSSCK---------------------------------------------------  523 (968)
T ss_pred             hhhhhccCEEECcCCcceeeCChHHcCcc---------------------------------------------------
Confidence            99999999999999999988887776544                                                   


Q ss_pred             ccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005          598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  677 (779)
Q Consensus       598 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  677 (779)
                        +|++|++++|.+++.+|..+..+++|+.|+|++|++++.+|..+.++++|++|++++|++.+.+|.. ..+.++....
T Consensus       524 --~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~  600 (968)
T PLN00113        524 --KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASA  600 (968)
T ss_pred             --CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhh
Confidence              7999999999999999999999999999999999999999999999999999999999999988854 4444555566


Q ss_pred             ccCCcCcc
Q 004005          678 VAYNNLSG  685 (779)
Q Consensus       678 l~~N~l~~  685 (779)
                      +.+|+..|
T Consensus       601 ~~~n~~lc  608 (968)
T PLN00113        601 VAGNIDLC  608 (968)
T ss_pred             hcCCcccc
Confidence            77887544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-42  Score=344.21  Aligned_cols=414  Identities=24%  Similarity=0.273  Sum_probs=206.5

Q ss_pred             CcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEcc
Q 004005          234 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS  313 (779)
Q Consensus       234 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls  313 (779)
                      -++|++++|++.......|..+++|+++.+.+|.++ .||..... ..+++.|++.+|.|+..-.+++..++.|+.||||
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            344555555555555555555555555555555554 45533322 3345555555555554444455555555555555


Q ss_pred             CCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCC
Q 004005          314 NNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK  393 (779)
Q Consensus       314 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  393 (779)
                      .|.|. +++...|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|++.-.
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            55554 44444433334455555555555444444444444444444444444433334444444444444444444322


Q ss_pred             cCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCC
Q 004005          394 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC  473 (779)
Q Consensus       394 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  473 (779)
                      --..|.++++|+.|.+..|++.......|..+.++++|+++.|++..                        +..+.+.++
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------------vn~g~lfgL  292 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------------VNEGWLFGL  292 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------------hhccccccc
Confidence            22334444444444444444443333334444444444444443331                        112224455


Q ss_pred             CCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccC
Q 004005          474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN  553 (779)
Q Consensus       474 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  553 (779)
                      ++|+.|++++|.|..+.++....+++|+.|+|+.|+++...+..|..+..|++|.|++|.++.....+|..         
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~---------  363 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG---------  363 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH---------
Confidence            55555666666555555555555555666666666555555555555555555555555554322222222         


Q ss_pred             CCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc---ccCCCCCCEEEC
Q 004005          554 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ---IGNLTRIQTLNL  630 (779)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L  630 (779)
                                                                  +++|++|||++|.++..+.++   |.++++|+.|+|
T Consensus       364 --------------------------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  364 --------------------------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             --------------------------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence                                                        224555666666555433322   555555666666


Q ss_pred             cccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCC
Q 004005          631 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG  710 (779)
Q Consensus       631 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~  710 (779)
                      .+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|+.|.+..-.+-|.|.     +.++..|.+..++.  .
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq-----l~Wl~qWl~~~~lq--~  471 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ-----LKWLAQWLYRRKLQ--S  471 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc-----HHHHHHHHHhcccc--c
Confidence            6666554444555566666666666666555555555555 55555555544444432     11222222221211  1


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCc
Q 004005          711 LPLPICRSPATMPEASIGNEQDDNL  735 (779)
Q Consensus       711 ~~l~~c~~~~~~~~~~~~~~~~~~~  735 (779)
                      .....|.+|+...++++...+..++
T Consensus       472 sv~a~CayPe~Lad~~i~svd~~~l  496 (873)
T KOG4194|consen  472 SVIAKCAYPEPLADQSIVSVDTANL  496 (873)
T ss_pred             ceeeeccCCcccccceeEeechhhc
Confidence            1112499999988887777666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-41  Score=334.81  Aligned_cols=373  Identities=26%  Similarity=0.308  Sum_probs=177.0

Q ss_pred             EEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC
Q 004005          260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN  339 (779)
Q Consensus       260 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~  339 (779)
                      .|++++|.+. .+....+..+++|+.+++..|.++ .+|.......+|+.|+|.+|.|. ++...-.+.++.|+.|||+.
T Consensus        82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence            3555555544 222222333455555555555444 33443333334555555555554 33333333345555555555


Q ss_pred             cccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC
Q 004005          340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP  419 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  419 (779)
                      |.|..+....|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++...+..|..+++|+.|++..|++.-..-
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            55544444444444445555555555554444445555555555555555554444444455555555555554442222


Q ss_pred             cccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCC
Q 004005          420 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ  499 (779)
Q Consensus       420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  499 (779)
                      ..|.++++|+.|.+..|++.                        .+.+++|.++.++++|+|+.|++...-.+++-+++.
T Consensus       239 ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccch
Confidence            33445555555555444443                        122333444555555555555554444444555555


Q ss_pred             CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005          500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH  579 (779)
Q Consensus       500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (779)
                      |+.|++++|.|....++.++.+++|++|+|+.|+|+...+..|..+.                                 
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~---------------------------------  341 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS---------------------------------  341 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH---------------------------------
Confidence            55555555555444444444455555555555555444444333221                                 


Q ss_pred             ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCC---CCCCCCCCCEEECCC
Q 004005          580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS---TFSNLKHVESLDLSN  656 (779)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~  656 (779)
                                          .|++|+|++|.+...-..+|.++++|++|||++|.+.+.+.+   .|.++++|+.|++.+
T Consensus       342 --------------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  342 --------------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             --------------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence                                345555555555444444455555555555555555433332   344455555555555


Q ss_pred             CcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005          657 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  713 (779)
Q Consensus       657 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  713 (779)
                      |++..+...+|.++.+|+.|||.+|.|...-|..|..+ .+.++.+..-.++|+|.+
T Consensus       402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            55544444455555555555555555554444444444 444444444445555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.9e-39  Score=308.77  Aligned_cols=389  Identities=28%  Similarity=0.403  Sum_probs=221.6

Q ss_pred             hhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCC
Q 004005          202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP  281 (779)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~  281 (779)
                      .++.+..++.++..+|+++ ..|..+ .++.++..+++.+|++....+..+. ++.|++||...|.++ .+|+.++. +.
T Consensus       132 ~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~  206 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LE  206 (565)
T ss_pred             hHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hh
Confidence            3445556677777777776 455554 3566666666666666544433333 555555555555554 44544443 44


Q ss_pred             CCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEc
Q 004005          282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL  361 (779)
Q Consensus       282 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  361 (779)
                      +|+.|++..|++. ..| .|.++..|+.+.++.|.|. .+|.....+++++..|+++.|++                   
T Consensus       207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl-------------------  264 (565)
T KOG0472|consen  207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL-------------------  264 (565)
T ss_pred             hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc-------------------
Confidence            4455555555444 233 3444455555555555444 44444444444444444444444                   


Q ss_pred             cCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCC-----CCCCcE------
Q 004005          362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-----LDSLQI------  430 (779)
Q Consensus       362 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~------  430 (779)
                           . ..|+.+.-+++|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+-.+.+.+     ++.|+.      
T Consensus       265 -----k-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  265 -----K-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             -----c-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence                 4 33444444444444555544444 233344444 4444444444433211110000     000000      


Q ss_pred             EEc-cC------CcCccCCCCccCcccccEEEccCcccccccCcccccCC--CCccEEeccCccCCCccCccccCCCCCC
Q 004005          431 LDI-SD------NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC--SSLVTLDLSYNRLNGSIPDWVDGLSQLS  501 (779)
Q Consensus       431 L~l-~~------n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~  501 (779)
                      +.- .+      ....+..+......+.+.|++++-++ ..+|...|...  .-.+..+++.|++. ..|..+..+..+.
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv  414 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV  414 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence            000 00      00112233333345566666666665 34555545432  23667888888877 4666565555543


Q ss_pred             -EEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccc
Q 004005          502 -HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE  580 (779)
Q Consensus       502 -~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (779)
                       .+.+++|.+. .+|..++.+++|..|++++|.+. .+|..+..+                                   
T Consensus       415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l-----------------------------------  457 (565)
T KOG0472|consen  415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL-----------------------------------  457 (565)
T ss_pred             HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh-----------------------------------
Confidence             4445555554 66777888888888888888765 344433332                                   


Q ss_pred             eeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005          581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  660 (779)
                                        ..|+.||++.|++. ..|..+..+..|+.+-.++|++....|+.+.++.+|.+|||.+|.+.
T Consensus       458 ------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  458 ------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             ------------------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence                              25888888888887 67888777778888888888888777777888888888888888887


Q ss_pred             CCCcccccCCCCCcEEeccCCcCc
Q 004005          661 GKIPHQLVELKTLEVFSVAYNNLS  684 (779)
Q Consensus       661 ~~~~~~~~~l~~L~~L~l~~N~l~  684 (779)
                       .+|..++++++|+.|++.||+|.
T Consensus       519 -~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 -QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -hCChhhccccceeEEEecCCccC
Confidence             66778888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.1e-39  Score=308.12  Aligned_cols=488  Identities=25%  Similarity=0.353  Sum_probs=351.7

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI  132 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L  132 (779)
                      ..++.|.+++|++     ..+.+.+.++..|.+|++++|+++ ..|.+++.+.+++.++.++|.+. .+|+ .++.+.+|
T Consensus        45 v~l~~lils~N~l-----~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDL-----EVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCch-----hhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence            4577888888887     455567788888888888888877 67888888888888888888887 7887 78888888


Q ss_pred             CEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEE
Q 004005          133 EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV  212 (779)
Q Consensus       133 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  212 (779)
                      .+++.+.|.+... + ..++.+..+..++..+|++..                             .|..+..+.++..+
T Consensus       117 ~~l~~s~n~~~el-~-~~i~~~~~l~dl~~~~N~i~s-----------------------------lp~~~~~~~~l~~l  165 (565)
T KOG0472|consen  117 VKLDCSSNELKEL-P-DSIGRLLDLEDLDATNNQISS-----------------------------LPEDMVNLSKLSKL  165 (565)
T ss_pred             hhhhccccceeec-C-chHHHHhhhhhhhcccccccc-----------------------------CchHHHHHHHHHHh
Confidence            8888888877632 2 245566666666655555442                             46677778889999


Q ss_pred             EccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCC
Q 004005          213 DLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA  292 (779)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~  292 (779)
                      ++.+|++. ..|.... +++.|++++.-.|.+. .+|..++.+.+|+.|++..|++. ..|+ +.. +..|+.+.++.|.
T Consensus       166 ~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe-f~g-cs~L~Elh~g~N~  239 (565)
T KOG0472|consen  166 DLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE-FPG-CSLLKELHVGENQ  239 (565)
T ss_pred             hccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC-CCc-cHHHHHHHhcccH
Confidence            99999998 4555554 4899999999888775 67889999999999999999997 7773 333 6789999999999


Q ss_pred             CCcccCcc-ccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC
Q 004005          293 LDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP  371 (779)
Q Consensus       293 ~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  371 (779)
                      |. .+|.+ ...++++.+||+.+|+++ +.|+.+.. +.+|+.|++++|.+++ .+..++++ +|+.|-+.+|.+..+-.
T Consensus       240 i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  240 IE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             HH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHH
Confidence            98 45554 458999999999999999 99988864 7889999999999985 55667777 88888898888763211


Q ss_pred             ccccCCCC---CCEEEccCCCCCCCcCccccCCCCCcEEEccCCc-ccCCcCcccCCCCCCcEEEccCCcCccCCCCccC
Q 004005          372 QSLSKCSS---LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH-LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH  447 (779)
Q Consensus       372 ~~~~~l~~---L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  447 (779)
                      + +-....   |++|.=   .+....+   +.-   +.=.-+.-. .....| ....+.+.+.|++++-+++.++...|.
T Consensus       315 ~-ii~~gT~~vLKyLrs---~~~~dgl---S~s---e~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfe  383 (565)
T KOG0472|consen  315 E-IISKGTQEVLKYLRS---KIKDDGL---SQS---EGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFE  383 (565)
T ss_pred             H-HHcccHHHHHHHHHH---hhccCCC---CCC---cccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHH
Confidence            1 111110   111100   0110000   000   000000000 001111 122345667777777777766666665


Q ss_pred             cc---cccEEEccCcccccccCcccccCCCCc-cEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCC
Q 004005          448 PL---SIKQVHLSKNMLHGQLKRGTFFNCSSL-VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ  523 (779)
Q Consensus       448 ~~---~L~~L~l~~n~~~~~~~~~~~~~~~~L-~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  523 (779)
                      ..   -.+..++++|++ .++|.. +..+..+ +.+.+++|.+. .+|..+..+++|..|++++|.+. ..|..+..+..
T Consensus       384 a~~~~~Vt~VnfskNqL-~elPk~-L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~  459 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQL-CELPKR-LVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR  459 (565)
T ss_pred             HhhhcceEEEecccchH-hhhhhh-hHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhh
Confidence            32   266777788777 455555 4334333 34566666655 78888899999999999999887 67777888889


Q ss_pred             CCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005          524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG  603 (779)
Q Consensus       524 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  603 (779)
                      |+.++++.|++. ..|.+....+                                                     .++.
T Consensus       460 Lq~LnlS~NrFr-~lP~~~y~lq-----------------------------------------------------~lEt  485 (565)
T KOG0472|consen  460 LQTLNLSFNRFR-MLPECLYELQ-----------------------------------------------------TLET  485 (565)
T ss_pred             hheecccccccc-cchHHHhhHH-----------------------------------------------------HHHH
Confidence            999999999875 3444432222                                                     3666


Q ss_pred             EEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005          604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       604 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  660 (779)
                      +-.++|++....|..+.++.+|..|||.+|.+. .+|..++++++|++|++++|++.
T Consensus       486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            667779998777777999999999999999999 77888999999999999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=9.7e-35  Score=307.71  Aligned_cols=406  Identities=26%  Similarity=0.337  Sum_probs=230.8

Q ss_pred             ccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCccccc
Q 004005           73 LDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLF  152 (779)
Q Consensus        73 l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~  152 (779)
                      +|..+-.-..++.|+++.|.+....-+.+.+.-+|+.||+++|++. ..|. .+..+.+|+.|+++.|.+.. .+ ....
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~-vp-~s~~   88 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRS-VP-SSCS   88 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhh-Cc-hhhh
Confidence            3333333344555555555443222233344444666666666554 4554 45555566666666655542 12 2344


Q ss_pred             CCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCC
Q 004005          153 NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT  232 (779)
Q Consensus       153 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  232 (779)
                      ++.+|+++++.+|.+.                             .+|..+..+.+|++|+++.|.+. .+|..+ ..+.
T Consensus        89 ~~~~l~~lnL~~n~l~-----------------------------~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt  137 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQ-----------------------------SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLT  137 (1081)
T ss_pred             hhhcchhheeccchhh-----------------------------cCchhHHhhhcccccccchhccC-CCchhH-Hhhh
Confidence            5555555555544433                             13455555566666666666655 455544 4555


Q ss_pred             CCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEc
Q 004005          233 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL  312 (779)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  312 (779)
                      .++.+..++|.-..    .++.. .++++++..|.+.+.++..... +..  .+++.+|.+.   -..+..++.|+.+..
T Consensus       138 ~~~~~~~s~N~~~~----~lg~~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c  206 (1081)
T KOG0618|consen  138 AEEELAASNNEKIQ----RLGQT-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHC  206 (1081)
T ss_pred             HHHHHhhhcchhhh----hhccc-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhh
Confidence            56666666651111    11111 1566666666666555555433 222  4777777665   223556677777777


Q ss_pred             cCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCC
Q 004005          313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG  392 (779)
Q Consensus       313 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  392 (779)
                      ..|.+. .+.    ..-++++.|+.++|.+.....  -..-.+|++++++.|++. .+|+++..+.+|+.++..+|.++ 
T Consensus       207 ~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-  277 (1081)
T KOG0618|consen  207 ERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-  277 (1081)
T ss_pred             hhcccc-eEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-
Confidence            777775 222    135678888888887773222  123457888888888887 44578888888888888888885 


Q ss_pred             CcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC--cccccEEEccCcccccccCcccc
Q 004005          393 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH--PLSIKQVHLSKNMLHGQLKRGTF  470 (779)
Q Consensus       393 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~  470 (779)
                      ..|..+...++|+.+.+..|.+. .+|....++++|++|++..|++...++..+.  ...+..+..+.|++.. .+...=
T Consensus       278 ~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e  355 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEE  355 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccc
Confidence            56666777788888888888887 5556667788888888888887644443332  1224445545444422 111111


Q ss_pred             cCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCC
Q 004005          471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH  535 (779)
Q Consensus       471 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  535 (779)
                      ...+.|+.|.+.+|.+++..-..+.++.+|+.|+|++|++...+...+.++..|++|++++|+++
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence            22345556666666665544444555556666666666655444444555555555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.8e-33  Score=295.70  Aligned_cols=486  Identities=28%  Similarity=0.319  Sum_probs=302.3

Q ss_pred             CCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchh
Q 004005           21 LEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC  100 (779)
Q Consensus        21 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~  100 (779)
                      +..|++..|.         +...-.+.+. +.-+|+.||+++|.+     ..+|..+..+.+|+.|+++.|.|. ..|.+
T Consensus        23 ~~~ln~~~N~---------~l~~pl~~~~-~~v~L~~l~lsnn~~-----~~fp~~it~l~~L~~ln~s~n~i~-~vp~s   86 (1081)
T KOG0618|consen   23 LQILNLRRNS---------LLSRPLEFVE-KRVKLKSLDLSNNQI-----SSFPIQITLLSHLRQLNLSRNYIR-SVPSS   86 (1081)
T ss_pred             HHhhhccccc---------cccCchHHhh-heeeeEEeecccccc-----ccCCchhhhHHHHhhcccchhhHh-hCchh
Confidence            6777777776         3322134444 556699999998887     677888888899999999988877 66788


Q ss_pred             hcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCC
Q 004005          101 MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP  180 (779)
Q Consensus       101 ~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  180 (779)
                      .+++.+|++|.|.+|.+. .+|. .+..+.+|++|++++|.+.. +|. .+..+..+..+..++|...            
T Consensus        87 ~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~-~Pl-~i~~lt~~~~~~~s~N~~~------------  150 (1081)
T KOG0618|consen   87 CSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGP-IPL-VIEVLTAEEELAASNNEKI------------  150 (1081)
T ss_pred             hhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCC-Cch-hHHhhhHHHHHhhhcchhh------------
Confidence            888899999999988887 7887 78888999999999888762 332 3445555555555554100            


Q ss_pred             cccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCE
Q 004005          181 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ  260 (779)
Q Consensus       181 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  260 (779)
                                          ..++.. .++.+++..+.+.+.++... ..+..  .|++.+|.+.   ...+..+++|+.
T Consensus       151 --------------------~~lg~~-~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~~l~~  203 (1081)
T KOG0618|consen  151 --------------------QRLGQT-SIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLANLEV  203 (1081)
T ss_pred             --------------------hhhccc-cchhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhccchhh
Confidence                                001111 25666677676666665543 23333  4777777765   234556667777


Q ss_pred             EEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCc
Q 004005          261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN  340 (779)
Q Consensus       261 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n  340 (779)
                      +....|++. .+.    ..-++++.|..+.|.++...+.  ..-.+|+++++++|.+. .+| .+...+.+|+.++..+|
T Consensus       204 l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N  274 (1081)
T KOG0618|consen  204 LHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHN  274 (1081)
T ss_pred             hhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccceEecccch
Confidence            777766654 111    1124666666666666532221  12245666666666665 556 33334666666666666


Q ss_pred             ccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCc
Q 004005          341 NLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV  420 (779)
Q Consensus       341 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  420 (779)
                      .+. ..+..+....+|+.|++..|.+. -+|....+++.|++|++..|.+....+..+.-...                 
T Consensus       275 ~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~-----------------  335 (1081)
T KOG0618|consen  275 RLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA-----------------  335 (1081)
T ss_pred             hHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH-----------------
Confidence            664 23344445566666666666655 23334455566666666666655322222222211                 


Q ss_pred             ccCCCCCCcEEEccCCcCccCCC-CccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCC
Q 004005          421 EFCQLDSLQILDISDNNISGSLP-SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ  499 (779)
Q Consensus       421 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  499 (779)
                            +|+.++.+.|++..... .....+.|+.|++.+|.++....+- +.+..+|+.|+|++|++.......+.+++.
T Consensus       336 ------~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~  408 (1081)
T KOG0618|consen  336 ------SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEE  408 (1081)
T ss_pred             ------HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHH
Confidence                  13344444444332211 1112445667777777776655554 788899999999999999655566889999


Q ss_pred             CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005          500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH  579 (779)
Q Consensus       500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (779)
                      |+.|+|+||+++ .+|..+..+..|++|...+|++.. .| .+..                                   
T Consensus       409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~-----------------------------------  450 (1081)
T KOG0618|consen  409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQ-----------------------------------  450 (1081)
T ss_pred             hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhh-----------------------------------
Confidence            999999999999 667888899999999999988762 22 2222                                   


Q ss_pred             ceeeeeeccceeeeccccccCcceEEccCCccccc-CcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCC
Q 004005          580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN  657 (779)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  657 (779)
                                        ++.|+.+|+|.|+++.. +|..... ++|++|||++|.-.......|..+..+...++.-|
T Consensus       451 ------------------l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  451 ------------------LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ------------------cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence                              23677888888877643 2222222 67777777777644344455555555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.8e-31  Score=270.19  Aligned_cols=365  Identities=29%  Similarity=0.388  Sum_probs=224.6

Q ss_pred             ccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEc
Q 004005          184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV  263 (779)
Q Consensus       184 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  263 (779)
                      .+..+++.|....+.+|.....++.+++|.|...++. .+|..+ +.+.+|++|.+.+|++... ...+..++.|+.+.+
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence            3445554444444555666666666666666655554 455554 4555566666555555422 234444555555555


Q ss_pred             cCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccC
Q 004005          264 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ  343 (779)
Q Consensus       264 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~  343 (779)
                      ..|++..                        .-+|..+-.+..|+.|+||+|++. +.|..+. .-.++-.|++++|+|.
T Consensus        86 R~N~LKn------------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   86 RDNNLKN------------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hcccccc------------------------CCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc
Confidence            5544431                        134555556666666666666666 6666554 3556666777777766


Q ss_pred             ccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCccc-CCcCccc
Q 004005          344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE-GPIPVEF  422 (779)
Q Consensus       344 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~  422 (779)
                      .++...|.+++.|-.|||++|++. .+|..+..+..|++|++++|++....-..+..+++|+.|.+++.+-+ .-+|.++
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl  218 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL  218 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence            665555666677777777777766 44555666777777777777765443344555666777777766433 2456667


Q ss_pred             CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005          423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH  502 (779)
Q Consensus       423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  502 (779)
                      ..+.+|..+|++.|.+...+..                         +..+++|+.|+||+|+|+. ..-......+|++
T Consensus       219 d~l~NL~dvDlS~N~Lp~vPec-------------------------ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLPIVPEC-------------------------LYKLRNLRRLNLSGNKITE-LNMTEGEWENLET  272 (1255)
T ss_pred             hhhhhhhhccccccCCCcchHH-------------------------HhhhhhhheeccCcCceee-eeccHHHHhhhhh
Confidence            7777777777777766522221                         3445555566666665552 2223334456667


Q ss_pred             EEccCCcccccccccccCCCCCCEEEccCCcCCCC-CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccce
Q 004005          503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI  581 (779)
Q Consensus       503 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (779)
                      |+++.|+++ ..|++++.++.|+.|.+.+|+++-. +|+.++.+.                                   
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~-----------------------------------  316 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI-----------------------------------  316 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------------------------------
Confidence            777777766 5666667777777777777765421 333333322                                   


Q ss_pred             eeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005          582 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  660 (779)
                                        .|+++..++|.+. .+|+.+..+..|+.|.|+.|++. .+|+++.-++.|+.||++.|+-.
T Consensus       317 ------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  317 ------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                              5677777777776 67888888888888888888887 67888888888888888888776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.2e-31  Score=268.31  Aligned_cols=364  Identities=25%  Similarity=0.362  Sum_probs=203.9

Q ss_pred             CCccCEEEccCCcCC-CCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCC
Q 004005          255 HKRLRQLDVSNNNIR-GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ  333 (779)
Q Consensus       255 ~~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~  333 (779)
                      ++-.+-+|+++|.++ +.+|..... ++.++.|.+...++. .+|+.++.+.+|++|.+++|++. .+...+. .++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence            345556677777766 344544433 556666666666555 55666666666666666666655 3333332 366666


Q ss_pred             EEEccCcccCc-cCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCC
Q 004005          334 FLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN  412 (779)
Q Consensus       334 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  412 (779)
                      .+.+..|++.. -+|..+..+..|+.|||++|++. ..|..+...+++-.|++++|+|..+....|-+++.|-.|++++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            66666665542 23444455666666666666666 55555666666666666666666444455566666666666666


Q ss_pred             cccCCcCcccCCCCCCcEEEccCCcCccC-CCCccCcccccEEEccCcccc-cccCcccccCCCCccEEeccCccCCCcc
Q 004005          413 HLEGPIPVEFCQLDSLQILDISDNNISGS-LPSCFHPLSIKQVHLSKNMLH-GQLKRGTFFNCSSLVTLDLSYNRLNGSI  490 (779)
Q Consensus       413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~  490 (779)
                      ++. ..|.....+..|++|++++|.+... ......+.+|+.|.+++.+-+ ..+|.. +.++.+|..+|+|.|.+. .+
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC-cc
Confidence            665 3444455566666666666654311 111112334444455443321 123332 455555666666666555 45


Q ss_pred             CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005          491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  570 (779)
Q Consensus       491 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (779)
                      |+.+-.+++|+.|+|++|+|+. .........+|++|++++|+++ ..|.++..++                        
T Consensus       238 Pecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------  291 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------  291 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH------------------------
Confidence            5555555666666666666552 2222333445555666666554 3444443332                        


Q ss_pred             cccccccccceeeeeeccceeeeccccccCcceEEccCCcccc-cCcccccCCCCCCEEECcccccccCCCCCCCCCCCC
Q 004005          571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV  649 (779)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  649 (779)
                                                   .|+.|+..+|+++- -+|..++.+.+|+++..++|.+. ..|+++..+..|
T Consensus       292 -----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  292 -----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             -----------------------------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence                                         45566666665542 25556666666666666666665 566666666666


Q ss_pred             CEEECCCCcCCCCCcccccCCCCCcEEeccCCcC
Q 004005          650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  683 (779)
Q Consensus       650 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  683 (779)
                      +.|.|+.|++. .+|+++.-++.|+.||++.|+=
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            66666666665 5566666666666666666653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.4e-27  Score=229.91  Aligned_cols=394  Identities=22%  Similarity=0.233  Sum_probs=228.9

Q ss_pred             CCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccC-CcCccccchhhhhCCCCCC
Q 004005          255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQ  333 (779)
Q Consensus       255 ~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~  333 (779)
                      .+.-.+++|..|+|+ .+|...|..+++|+.|++++|.|+.+.|.+|.++++|..|.+.+ |+|+ .+|...|.++..++
T Consensus        66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence            356678888888887 88888888888899999999998888899999999888887766 7887 88888888899999


Q ss_pred             EEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCC------------CCcCccccCC
Q 004005          334 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL------------GKIPRWLGNL  401 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~------------~~~~~~~~~l  401 (779)
                      .|.+.-|++..+..+.|..++++..|.+.+|.+..+-..+|..+..++.+.+..|.+.            ...+..+++.
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            9988888888888888889999999999999888555568888888888888887732            1122223333


Q ss_pred             CCCcEEEccCCcccCCcCcccCC-CCCCcEEEccCCcCccCCC-CccC-cccccEEEccCcccccccCcccccCCCCccE
Q 004005          402 TRLQYIIMPNNHLEGPIPVEFCQ-LDSLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  478 (779)
Q Consensus       402 ~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  478 (779)
                      .-.....+.+.++..+.+..|.. +.++..=-.+.+...++.| .+|. +++|++|++++|+++ .+.+++|.+...+++
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQE  302 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhh
Confidence            33333333333333222222211 1111100011111111112 1222 445555555555553 233344666666666


Q ss_pred             EeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCC
Q 004005          479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD  558 (779)
Q Consensus       479 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  558 (779)
                      |.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++...-.-++-.- +.........+.
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-Wlr~~~~~~~~~  381 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-WLRKKSVVGNPR  381 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-HHhhCCCCCCCC
Confidence            6666666655555556666666666666666666566666666666666666665432110000000 000000111111


Q ss_pred             cchhhhhh-------------ccc-----c--ccc---ccccccceeeeeeccceeeeccccccCcceEEccCCcccccC
Q 004005          559 EQFEIFFS-------------IEG-----H--QGF---LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI  615 (779)
Q Consensus       559 ~~~~~~~~-------------~~~-----~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  615 (779)
                      .+.+.+..             ..+     .  ...   ...-..+++.++.+....++.+ .+...++|++.+|.++ .+
T Consensus       382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-iP~d~telyl~gn~~~-~v  459 (498)
T KOG4237|consen  382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-IPVDVTELYLDGNAIT-SV  459 (498)
T ss_pred             CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-CCchhHHHhcccchhc-cc
Confidence            11111000             000     0  000   0001223444555544444443 3345667777777777 45


Q ss_pred             cccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCC
Q 004005          616 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN  657 (779)
Q Consensus       616 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  657 (779)
                      |..  .+.+| .+++++|+|.......|.++++|.+|-|++|
T Consensus       460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            555  45566 7777777777666667777777777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=4.8e-26  Score=219.45  Aligned_cols=300  Identities=24%  Similarity=0.245  Sum_probs=157.9

Q ss_pred             ccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC-CCCCCCcCccc
Q 004005          320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN-NSLLGKIPRWL  398 (779)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~  398 (779)
                      ++|..+   .+.-.+++|..|.|+.+.+.+|..+++|++|||++|.|+.+.|++|.+++.+.+|-+.+ |+|++.....|
T Consensus        60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            444443   33455566666666666666666666666666666666666666666666655555444 55655444556


Q ss_pred             cCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCcc
Q 004005          399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLV  477 (779)
Q Consensus       399 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  477 (779)
                      .++.+++.|.+.-|++..+..+.|..++++..|.+.+|.+..+....+. ..+++.+.+..|.+..      ..+++.+.
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla  210 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLA  210 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhh
Confidence            6666666666666666555555566666666666666555433222221 2223333333322100      01111111


Q ss_pred             EEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccC-CCCCCEEEccCCcCCCCCC-cccccCcccccccCCC
Q 004005          478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIP-PCFDNTTLHESYSNSS  555 (779)
Q Consensus       478 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~  555 (779)
                      .. +.      ..|-.+++..-.....+.+.++....+..|.. ..++..--.+.+...+..| .+|             
T Consensus       211 ~~-~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf-------------  270 (498)
T KOG4237|consen  211 DD-LA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF-------------  270 (498)
T ss_pred             hH-Hh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH-------------
Confidence            10 00      01111222222223333333333222222211 0111100011111111111 111             


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  635 (779)
                                                              +.+++|++|+|++|+++++.+.+|.++..+++|.|..|+|
T Consensus       271 ----------------------------------------~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l  310 (498)
T KOG4237|consen  271 ----------------------------------------KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL  310 (498)
T ss_pred             ----------------------------------------hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence                                                    2245677777777777777777777777777777777777


Q ss_pred             ccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005          636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      .......|.++..|++|+|.+|+|+.+.|.+|..+.+|.+|++-.|++.|.|.
T Consensus       311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence            76666777777777777777777777777777777777777777777777665

>PLN03210 Resistant to P

Probab=99.89  E-value=9.1e-22  Score=235.49  Aligned_cols=58  Identities=26%  Similarity=0.374  Sum_probs=29.0

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK  658 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  658 (779)
                      +|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            3555555555554 345555555555555555532222344444555555555555553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.4e-21  Score=233.98  Aligned_cols=336  Identities=22%  Similarity=0.282  Sum_probs=217.0

Q ss_pred             ccCCCCcEEECCCCC------CCcccCccccCCC-CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccC
Q 004005          278 DVLPSLYVFNNSMNA------LDGSIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN  350 (779)
Q Consensus       278 ~~l~~L~~L~l~~n~------~~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  350 (779)
                      ..+++|+.|.+..+.      +...+|..+..++ +|+.|.+.++++. .+|..+  ...+|++|++.++.+.. .+..+
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~  630 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGV  630 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-ccccc
Confidence            335566666554332      1223455555543 4777777777765 666554  25677777777777663 34455


Q ss_pred             CCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcE
Q 004005          351 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  430 (779)
Q Consensus       351 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  430 (779)
                      ..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence            667777777777765444555 36667777777777776555667777777777777777765444555444 5677777


Q ss_pred             EEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCC-------ccCccccCCCCCCEE
Q 004005          431 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG-------SIPDWVDGLSQLSHL  503 (779)
Q Consensus       431 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L  503 (779)
                      |++++|.....+|..  ..+|+.|++++|.+ ..+|.. + .+++|++|++.++....       ..+..+...++|+.|
T Consensus       709 L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc-c-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence            777777554444432  34677777777776 344443 2 45677777776643211       112222334678888


Q ss_pred             EccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceee
Q 004005          504 ILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE  583 (779)
Q Consensus       504 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (779)
                      ++++|...+.+|..+.++++|+.|++++|...+.+|...                                         
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------------------------  822 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----------------------------------------  822 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------------------------
Confidence            888887766777778888888888888875433333322                                         


Q ss_pred             eeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCC
Q 004005          584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI  663 (779)
Q Consensus       584 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  663 (779)
                                   .+++|+.|++++|.....+|..   ..+|++|+|++|.++ .+|..+..+++|+.|++++|.-...+
T Consensus       823 -------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        823 -------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             -------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence                         1346888888887665455543   357888888888888 56777888888888888886555567


Q ss_pred             cccccCCCCCcEEeccCCc
Q 004005          664 PHQLVELKTLEVFSVAYNN  682 (779)
Q Consensus       664 ~~~~~~l~~L~~L~l~~N~  682 (779)
                      |..+..+++|+.+++++|.
T Consensus       886 ~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcccccccCCCeeecCCCc
Confidence            7777778888888888874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.8e-19  Score=199.33  Aligned_cols=113  Identities=27%  Similarity=0.399  Sum_probs=51.5

Q ss_pred             CEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 004005          308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN  387 (779)
Q Consensus       308 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  387 (779)
                      ..|+++++.++ .+|..+.   ++|+.|++.+|+++... .   ..++|++|++++|+++.. |..   .++|+.|++++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence            34444444444 4444332   24445555555444321 1   134555555555555522 221   23455555555


Q ss_pred             CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCcc
Q 004005          388 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG  440 (779)
Q Consensus       388 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  440 (779)
                      |.+.. +|..   .++|+.|++++|+++. +|.   ..++|+.|++++|++++
T Consensus       272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             Cchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc
Confidence            55542 2221   1345555555555552 222   23456666666665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=4e-19  Score=196.56  Aligned_cols=265  Identities=24%  Similarity=0.259  Sum_probs=198.7

Q ss_pred             CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEc
Q 004005          330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM  409 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (779)
                      ..-..|+++.+.++. .|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|.++. +|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            456789999999885 444443  479999999999884 453   25789999999999884 4432   468899999


Q ss_pred             cCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCc
Q 004005          410 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  489 (779)
Q Consensus       410 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  489 (779)
                      ++|.+.. +|..   .++|+.|++++|+++..+.   .+++|+.|++++|.+.+ ++..    ...|+.|++++|.+++ 
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC----cccccccccccCcccc-
Confidence            9998874 3332   3578889999998885432   24678999999988854 3432    2467888888888874 


Q ss_pred             cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccc
Q 004005          490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG  569 (779)
Q Consensus       490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (779)
                      +|..   ..+|+.|++++|++++ +|..   ..+|+.|++++|.+++ +|..                            
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l----------------------------  380 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----------------------------  380 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc----------------------------
Confidence            4532   2478899999998885 3432   3578888888888764 2221                            


Q ss_pred             ccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCC
Q 004005          570 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV  649 (779)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  649 (779)
                                                  +.+|+.|++++|++++ +|..   .++|+.|++++|++++ +|..   ..+|
T Consensus       381 ----------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L  424 (788)
T PRK15387        381 ----------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGL  424 (788)
T ss_pred             ----------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhh
Confidence                                        1258999999999984 5543   3689999999999994 5653   3478


Q ss_pred             CEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCc
Q 004005          650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWK  691 (779)
Q Consensus       650 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~  691 (779)
                      +.|++++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            89999999998 689899999999999999999998877644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=5.7e-17  Score=180.98  Aligned_cols=246  Identities=27%  Similarity=0.376  Sum_probs=127.8

Q ss_pred             CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005          331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (779)
                      +...|+++++.++.. |..+  .+.|+.|++++|+++. +|..+.  ++|++|++++|.+.. +|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence            456666666666643 2222  2456667777766663 333332  366666666666652 343332  356666666


Q ss_pred             CCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCcc
Q 004005          411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI  490 (779)
Q Consensus       411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  490 (779)
                      +|.+. .+|..+.  .+|+.|++++|++..                        +|.. +  .++|+.|++++|+++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~------------------------LP~~-l--~~sL~~L~Ls~N~Lt~-L  298 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISC------------------------LPEN-L--PEELRYLSVYDNSIRT-L  298 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCc------------------------cccc-c--CCCCcEEECCCCcccc-C
Confidence            66665 3333332  355666666555553                        2222 1  1345566666665553 3


Q ss_pred             CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005          491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  570 (779)
Q Consensus       491 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (779)
                      |..+.  ++|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..+                            
T Consensus       299 P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----------------------------  344 (754)
T PRK15370        299 PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL----------------------------  344 (754)
T ss_pred             cccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh----------------------------
Confidence            33221  345666666666653 22222  2456666666666553 22111                            


Q ss_pred             cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCC
Q 004005          571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE  650 (779)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  650 (779)
                                                 +++|+.|++++|+++ .+|..+.  ++|++|+|++|+++. +|..+.  .+|+
T Consensus       345 ---------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~  391 (754)
T PRK15370        345 ---------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQ  391 (754)
T ss_pred             ---------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHH
Confidence                                       124666666666665 3444442  466666666666663 343332  2566


Q ss_pred             EEECCCCcCCCCCcccc----cCCCCCcEEeccCCcCc
Q 004005          651 SLDLSNNKLNGKIPHQL----VELKTLEVFSVAYNNLS  684 (779)
Q Consensus       651 ~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~  684 (779)
                      .|++++|++. .+|..+    ...+.+..+++.+|+++
T Consensus       392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            6666666665 334322    23456666777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=3.1e-17  Score=183.06  Aligned_cols=202  Identities=25%  Similarity=0.349  Sum_probs=91.8

Q ss_pred             CCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEc
Q 004005          282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL  361 (779)
Q Consensus       282 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  361 (779)
                      +...|+++++.++ .+|..+.  +.|+.|++++|.++ .+|...+   ++|+.|++++|.+... +..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence            3455666665555 2343332  35566666666655 4554432   3555555555555432 2221  124555555


Q ss_pred             cCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccC
Q 004005          362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS  441 (779)
Q Consensus       362 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  441 (779)
                      ++|.+. .+|..+.                          ++|+.|++++|++.. +|..+.  ++|+.|++++|+++..
T Consensus       249 s~N~L~-~LP~~l~--------------------------s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        249 SINRIT-ELPERLP--------------------------SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL  298 (754)
T ss_pred             cCCccC-cCChhHh--------------------------CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC
Confidence            555544 2233222                          244444444444442 232221  2455555555554432


Q ss_pred             CCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCC
Q 004005          442 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL  521 (779)
Q Consensus       442 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  521 (779)
                      ....  +.+|+.|++++|.+.. +|.. +  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+  .
T Consensus       299 P~~l--p~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p  366 (754)
T PRK15370        299 PAHL--PSGITHLNVQSNSLTA-LPET-L--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--P  366 (754)
T ss_pred             cccc--hhhHHHHHhcCCcccc-CCcc-c--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--c
Confidence            1111  1233444444444321 2221 1  1455666666666553 343332  45666666666655 233322  2


Q ss_pred             CCCCEEEccCCcCC
Q 004005          522 NQLQLLDLSNNNLH  535 (779)
Q Consensus       522 ~~L~~L~l~~n~l~  535 (779)
                      ++|+.|++++|+++
T Consensus       367 ~~L~~LdLs~N~Lt  380 (754)
T PRK15370        367 PTITTLDVSRNALT  380 (754)
T ss_pred             CCcCEEECCCCcCC
Confidence            45666666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=2.4e-18  Score=179.50  Aligned_cols=243  Identities=25%  Similarity=0.252  Sum_probs=121.6

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCC------CcchhhcCCCCCCEEEcCCCcccCCCCcc
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG------SLPWCMANMTSLRILDVSSNQLTGSISSS  124 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~l~~~  124 (779)
                      .+.+|++|+++++.+++.+...+++.+...+.|++|+++++.+.+      .++..+..+++|++|++++|.+.+..+. 
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-   99 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG-   99 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-
Confidence            666777777777776544444566666667777777777776652      2344566677777777777776533333 


Q ss_pred             cccCCCC---CCEEEccCccccCcCCc---ccccCC-CCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCC
Q 004005          125 PLVHLTS---IEELMLSNNYFQIPISL---EPLFNY-SRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF  197 (779)
Q Consensus       125 ~l~~l~~---L~~L~l~~n~~~~~~~~---~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  197 (779)
                      .+..+.+   |++|++++|.+++....   ..+..+ ++|+.|++++|.++.....                        
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------  155 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------------------------  155 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------------------------
Confidence            3444443   77777777665521110   122333 4555555555554421110                        


Q ss_pred             CCchhhcCCCCccEEEccCccCcccCChhh---hhcCCCCcEEEcCCCcCcCC----CCcCcCCCCccCEEEccCCcCCC
Q 004005          198 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETLFLVNDSLAGP----FRLPIHSHKRLRQLDVSNNNIRG  270 (779)
Q Consensus       198 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~i~~  270 (779)
                      .++..+..+++|++|++++|.+.+.....+   +..+++|++|++++|.+.+.    ....+..+++|++|++++|.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            012233444556666666665553221111   12334566666666655422    12233445566666666665553


Q ss_pred             CCCcccccc----CCCCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCc
Q 004005          271 HIPVKIGDV----LPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLT  318 (779)
Q Consensus       271 ~~~~~~~~~----l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~  318 (779)
                      .....+...    .+.|+.|++++|.++.    .+...+..+++|+.+++++|.+.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            222222111    1345555555554431    11222333344555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=2.3e-18  Score=179.75  Aligned_cols=281  Identities=26%  Similarity=0.258  Sum_probs=139.1

Q ss_pred             EEEccCcccCc-cCcccCCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCCCCC------CcCccccCCC
Q 004005          334 FLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLLG------KIPRWLGNLT  402 (779)
Q Consensus       334 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~  402 (779)
                      .|+|..+.+.+ .....+..++.|+.++++++.+...    ++..+...+.+++++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35566665552 2223344556677777777776432    23344555667777777665542      1122344455


Q ss_pred             CCcEEEccCCcccCCcCcccCCCC---CCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCC-CCccE
Q 004005          403 RLQYIIMPNNHLEGPIPVEFCQLD---SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC-SSLVT  478 (779)
Q Consensus       403 ~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~  478 (779)
                      +|+.|++++|.+.+..+..+..+.   +|++|++++|++.+...                   ..+.. .+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-------------------~~l~~-~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-------------------RLLAK-GLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-------------------HHHHH-HHHhCCCCceE
Confidence            666666666555433333332222   25555555554432100                   00111 13333 56666


Q ss_pred             EeccCccCCCc----cCccccCCCCCCEEEccCCccccc----ccccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005          479 LDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEGE----VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  550 (779)
Q Consensus       479 L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  550 (779)
                      |++++|.+++.    .+..+..+++|++|++++|.+++.    .+..+..+++|+.|++++|.+.+.....+...     
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-----  216 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-----  216 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----
Confidence            66666666521    223345556666777766666532    22234445566677776666542211111000     


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccccc-----CCCCC
Q 004005          551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRI  625 (779)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L  625 (779)
                                                                  ....++|++|++++|++++.....+.     ..+.|
T Consensus       217 --------------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         217 --------------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL  252 (319)
T ss_pred             --------------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence                                                        01123566666666666542222211     23566


Q ss_pred             CEEECccccccc----CCCCCCCCCCCCCEEECCCCcCCCC----CcccccCC-CCCcEEeccCCcC
Q 004005          626 QTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGK----IPHQLVEL-KTLEVFSVAYNNL  683 (779)
Q Consensus       626 ~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l  683 (779)
                      ++|++++|.++.    .....+..+++|+++++++|.+...    ....+... +.|+++++.+|++
T Consensus       253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            666666666651    1223344456666777777766633    22333333 5666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.4e-17  Score=142.53  Aligned_cols=183  Identities=29%  Similarity=0.462  Sum_probs=115.4

Q ss_pred             ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCC
Q 004005          445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL  524 (779)
Q Consensus       445 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  524 (779)
                      .|...+++.|.++.|+++ .+|+. ++.+.+|+.|++++|+|. ..|..++.+++|+.|++.-|++. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            344444555555555553 33443 667778888888888887 56777788888888888888876 677778888888


Q ss_pred             CEEEccCCcCCCC-CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005          525 QLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG  603 (779)
Q Consensus       525 ~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  603 (779)
                      +.||+.+|++... .|..|-.+                                                     ..|+.
T Consensus       105 evldltynnl~e~~lpgnff~m-----------------------------------------------------~tlra  131 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYM-----------------------------------------------------TTLRA  131 (264)
T ss_pred             hhhhccccccccccCCcchhHH-----------------------------------------------------HHHHH
Confidence            8888887776532 23333222                                                     14666


Q ss_pred             EEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC---CCcEEeccC
Q 004005          604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK---TLEVFSVAY  680 (779)
Q Consensus       604 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~l~~  680 (779)
                      |+|+.|.+. .+|..++.+++|+.|.+..|.+. .+|..++.+++|++|++.+|+++ .+|..++.+.   +-+.+.+.+
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~  208 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEE  208 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhh
Confidence            677777765 56666777777777777777766 56666677777777777777776 4554444322   223344455


Q ss_pred             CcCcccC
Q 004005          681 NNLSGEI  687 (779)
Q Consensus       681 N~l~~~~  687 (779)
                      |++...+
T Consensus       209 NPwv~pI  215 (264)
T KOG0617|consen  209 NPWVNPI  215 (264)
T ss_pred             CCCCChH
Confidence            5554333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=7.8e-16  Score=131.89  Aligned_cols=156  Identities=28%  Similarity=0.449  Sum_probs=115.5

Q ss_pred             CCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCc
Q 004005          350 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ  429 (779)
Q Consensus       350 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  429 (779)
                      +..+.+++.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            335667788888888888 55556888888888888888887 66777888888888888888887 7788888899999


Q ss_pred             EEEccCCcCcc-CCCC-ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccC
Q 004005          430 ILDISDNNISG-SLPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH  507 (779)
Q Consensus       430 ~L~l~~n~l~~-~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  507 (779)
                      .||+++|++.. ..|+ .|.+..|+.|++++|.+ ..+|.. .+.+++|+.|.+.+|.+. ..|..++.++.|+.|++++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            99998887753 3333 33466677777777766 344444 667777777777777766 4666677777777777777


Q ss_pred             Cccc
Q 004005          508 NNLE  511 (779)
Q Consensus       508 n~l~  511 (779)
                      |+++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            7776

>PLN03150 hypothetical protein; Provisional

Probab=99.45  E-value=2.4e-13  Score=151.98  Aligned_cols=118  Identities=35%  Similarity=0.612  Sum_probs=106.3

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCcccc-ccCCcccccCCCCCCCCCC-CCCC
Q 004005          680 YNNLSGEIPEWKAQF-ATFNESSYEGNTFLCGLPL-PICR  717 (779)
Q Consensus       680 ~N~l~~~~p~~~~~~-~~~~~~~~~~n~~~c~~~l-~~c~  717 (779)
                      +|++++.+|..+... .....+.+.+|+..|+.|. +.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876543 3556778999999998753 3363

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=8.8e-13  Score=126.96  Aligned_cols=243  Identities=23%  Similarity=0.263  Sum_probs=131.0

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC---CCCCcch-------hhcCCCCCCEEEcCCCcccCC
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND---LRGSLPW-------CMANMTSLRILDVSSNQLTGS  120 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~  120 (779)
                      .+..++.++||+|.++.-....+.+.+.+.+.|+.-++++--   ....+|+       ++.++++|++||||.|.+.-.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            556666667776666554444555556666666666666531   2223333       334556777777777766422


Q ss_pred             CCc---ccccCCCCCCEEEccCccccCcCC------------cccccCCCCCcEEEccCCccceeecccccccCCccccc
Q 004005          121 ISS---SPLVHLTSIEELMLSNNYFQIPIS------------LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN  185 (779)
Q Consensus       121 l~~---~~l~~l~~L~~L~l~~n~~~~~~~------------~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  185 (779)
                      -+.   .-++.+..|++|.+.+|.+.-...            ......-++|+.+..+.|++.+.....           
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~-----------  176 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA-----------  176 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH-----------
Confidence            111   124556677777777766541100            011223344555555555544322111           


Q ss_pred             EEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCCh---hhhhcCCCCcEEEcCCCcCcCC----CCcCcCCCCcc
Q 004005          186 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN---WLLENNTKLETLFLVNDSLAGP----FRLPIHSHKRL  258 (779)
Q Consensus       186 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L  258 (779)
                                   +...++.++.|+.+.+..|.+......   .-+..|++|++|+|.+|-++..    ....+..+++|
T Consensus       177 -------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  177 -------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             -------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence                         223455566777777777766533221   1245678888888888776542    23455667778


Q ss_pred             CEEEccCCcCCCCCCccccc----cCCCCcEEECCCCCCCcc----cCccccCCCCCCEEEccCCcC
Q 004005          259 RQLDVSNNNIRGHIPVKIGD----VLPSLYVFNNSMNALDGS----IPSSFGNMKFLQILDLSNNHL  317 (779)
Q Consensus       259 ~~L~l~~n~i~~~~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i  317 (779)
                      ++|++++|.+.......+..    ..|.|+++.+.+|.|+..    +.......+.|+.|++++|.+
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88888888776544333322    235566666666665421    112233455566666666655

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=7.1e-11  Score=132.22  Aligned_cols=114  Identities=32%  Similarity=0.522  Sum_probs=102.0

Q ss_pred             CCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcc
Q 004005          523 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS  602 (779)
Q Consensus       523 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  602 (779)
                      .++.|+|++|.+.|.+|..+..+.                                                     +|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            367889999999988887776544                                                     799


Q ss_pred             eEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCC-CCCcEEeccCC
Q 004005          603 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYN  681 (779)
Q Consensus       603 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N  681 (779)
                      .|+|++|++.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+... .++..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988763 57789999999


Q ss_pred             cCcccCCC
Q 004005          682 NLSGEIPE  689 (779)
Q Consensus       682 ~l~~~~p~  689 (779)
                      +..|..|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            98776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.7e-12  Score=126.07  Aligned_cols=208  Identities=22%  Similarity=0.204  Sum_probs=116.6

Q ss_pred             EEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc-hhhcCCCCCCEEEcCCCcccCC--CCcccccCCCCCC
Q 004005           57 YLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGS--ISSSPLVHLTSIE  133 (779)
Q Consensus        57 ~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--l~~~~l~~l~~L~  133 (779)
                      .+.+++-.+..++-..+.+.=+++.+|++..|.++.+..... +....|++++.|||++|-+..-  +-. ....+++|+
T Consensus        97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le  175 (505)
T KOG3207|consen   97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLE  175 (505)
T ss_pred             HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHH-HHHhcccch
Confidence            344444444333334444444677888888888887653221 4677788888888888866521  111 345677777


Q ss_pred             EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005          134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD  213 (779)
Q Consensus       134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  213 (779)
                      .|+++.|.+........-.                                                    .++.|+.|.
T Consensus       176 ~LNls~Nrl~~~~~s~~~~----------------------------------------------------~l~~lK~L~  203 (505)
T KOG3207|consen  176 NLNLSSNRLSNFISSNTTL----------------------------------------------------LLSHLKQLV  203 (505)
T ss_pred             hcccccccccCCccccchh----------------------------------------------------hhhhhheEE
Confidence            7877777665322211001                                                    123566666


Q ss_pred             ccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCC
Q 004005          214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL  293 (779)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~  293 (779)
                      ++.|+++..-..+....+|+|+.|++..|........+..-+..|++|||++|++.+.-.-..-..+|.|..|+++.+.+
T Consensus       204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             eccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence            66666664444555566777777777777533333334445567777777777765222222223366677777766666


Q ss_pred             Ccc-cCcc-----ccCCCCCCEEEccCCcC
Q 004005          294 DGS-IPSS-----FGNMKFLQILDLSNNHL  317 (779)
Q Consensus       294 ~~~-~~~~-----~~~l~~L~~L~Ls~n~i  317 (779)
                      ... .|+.     ...+++|++|+++.|++
T Consensus       284 ~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  284 ASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             chhcCCCccchhhhcccccceeeecccCcc
Confidence            532 1221     12344455555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.07  E-value=2.7e-12  Score=131.07  Aligned_cols=174  Identities=32%  Similarity=0.495  Sum_probs=116.1

Q ss_pred             cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005          452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN  531 (779)
Q Consensus       452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  531 (779)
                      ...+++.|++ ..+|.. +..+..|+.+.+..|.+. .+|..+..+..|+.++++.|++. ..|..++.+ -|+.|-+++
T Consensus        78 ~~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSN  152 (722)
T ss_pred             hhhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEec
Confidence            3345555554 233333 344445555555555555 44555555555555555555555 344444433 355555555


Q ss_pred             CcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcc
Q 004005          532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL  611 (779)
Q Consensus       532 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  611 (779)
                      |+++. +|...+                                                     ..+.|..||.+.|.+
T Consensus       153 Nkl~~-lp~~ig-----------------------------------------------------~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  153 NKLTS-LPEEIG-----------------------------------------------------LLPTLAHLDVSKNEI  178 (722)
T ss_pred             Ccccc-CCcccc-----------------------------------------------------cchhHHHhhhhhhhh
Confidence            55542 222221                                                     234688899999999


Q ss_pred             cccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          612 IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       612 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      . .+|..+.++.+|+.|++..|++. ..|..+..+ .|..||+|.|++. .+|-.|..|..|++|-|.+|+++ ..|.
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA  251 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA  251 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence            7 68888999999999999999998 456666655 4889999999998 88999999999999999999998 5554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.8e-11  Score=121.33  Aligned_cols=161  Identities=24%  Similarity=0.188  Sum_probs=68.9

Q ss_pred             cCCCCcEEEcCCCcCcCCCC-cCcCCCCccCEEEccCCcCCCCC-CccccccCCCCcEEECCCCCCCcccCcc-ccCCCC
Q 004005          230 NNTKLETLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNIRGHI-PVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKF  306 (779)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~  306 (779)
                      ++.+|+++.+.++.+..... .....|++++.||++.|-+.... -..+...+|+|+.|+++.|++....... -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            44556666666665543221 23445666666666666444211 1123333555555555555543211111 113445


Q ss_pred             CCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC-ccccCCCCCCEEEc
Q 004005          307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYL  385 (779)
Q Consensus       307 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l  385 (779)
                      |+.|.++.|.++-.--......+|+|+.|++..|...........-+..|+.|||++|.+..... .....++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            55555555554422222222334555555555543222222222233444455555444442211 12333444444444


Q ss_pred             cCCCC
Q 004005          386 NNNSL  390 (779)
Q Consensus       386 ~~n~~  390 (779)
                      +.+.+
T Consensus       279 s~tgi  283 (505)
T KOG3207|consen  279 SSTGI  283 (505)
T ss_pred             cccCc
Confidence            44443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.2e-10  Score=105.86  Aligned_cols=106  Identities=30%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             CCCcEEeCCCcccCCCCCCccccccc-CCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccc-cCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL-VHLT  130 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l-~~l~  130 (779)
                      .++++|+|++|.|+.+      +.++ .+.+|+.|+|++|.++..  +.+..+++|++|++++|+++ .++. .+ ..++
T Consensus        19 ~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp   88 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-T
T ss_pred             cccccccccccccccc------cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCC
Confidence            3455566665555221      1232 345556666666655532  24555566666666666655 4433 22 3455


Q ss_pred             CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccc
Q 004005          131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK  168 (779)
Q Consensus       131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~  168 (779)
                      +|++|++++|++........++.+++|+.|++.+|.+.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666665554333445555566666666665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=4.5e-11  Score=112.35  Aligned_cols=84  Identities=31%  Similarity=0.326  Sum_probs=49.3

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCc-ccccCCCCCcEEec
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSV  678 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l  678 (779)
                      +|+.||||+|.++ .+...-..+.+.+.|.|+.|.|...  ++++.+-+|..||+++|+|..... ..+++++.|+.+.+
T Consensus       330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            4556666666555 2333333455666666666666532  345566666777777777653322 35566777777777


Q ss_pred             cCCcCccc
Q 004005          679 AYNNLSGE  686 (779)
Q Consensus       679 ~~N~l~~~  686 (779)
                      .+||+.+.
T Consensus       407 ~~NPl~~~  414 (490)
T KOG1259|consen  407 TGNPLAGS  414 (490)
T ss_pred             cCCCcccc
Confidence            77777644

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=1e-11  Score=126.93  Aligned_cols=196  Identities=26%  Similarity=0.397  Sum_probs=155.8

Q ss_pred             CCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEE
Q 004005          424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL  503 (779)
Q Consensus       424 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  503 (779)
                      .+.--...|++.|++.......-.+..|+.+.++.|.+ ..++.. ..++..|+++||+.|+++ ..|..+..++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~-i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEA-ICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchh-hhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            44455678899999886655555577888888888887 455554 788999999999999998 6777776665 8999


Q ss_pred             EccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceee
Q 004005          504 ILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE  583 (779)
Q Consensus       504 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (779)
                      .+++|+++ ..|..++....|..||.+.|.+....+ -+..                                       
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slps-ql~~---------------------------------------  187 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGY---------------------------------------  187 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhhchH-Hhhh---------------------------------------
Confidence            99999998 677778889999999999999864332 2222                                       


Q ss_pred             eeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCC
Q 004005          584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI  663 (779)
Q Consensus       584 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  663 (779)
                                    +.+|+.|.+..|++. .+|..+..| .|..||+|.|++. .+|-.|..|..|++|.|.+|+++ ..
T Consensus       188 --------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP  249 (722)
T KOG0532|consen  188 --------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP  249 (722)
T ss_pred             --------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence                          236889999999998 577777755 5899999999999 88999999999999999999997 56


Q ss_pred             ccccc---CCCCCcEEeccCCc
Q 004005          664 PHQLV---ELKTLEVFSVAYNN  682 (779)
Q Consensus       664 ~~~~~---~l~~L~~L~l~~N~  682 (779)
                      |..+.   ..+=.++|+..-++
T Consensus       250 PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  250 PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hHHHHhccceeeeeeecchhcc
Confidence            65543   34556888888774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=3.7e-10  Score=121.17  Aligned_cols=199  Identities=34%  Similarity=0.482  Sum_probs=103.4

Q ss_pred             cEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCc
Q 004005          405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  484 (779)
Q Consensus       405 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  484 (779)
                      ..+....+.+... ...+...+.++.+++.+|.++.+.+......                        ++|+.|++++|
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N  150 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDN  150 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCcccccCccccccch------------------------hhccccccccc
Confidence            3566666665321 1233445667777777777765444332221                        24555555555


Q ss_pred             cCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhh
Q 004005          485 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF  564 (779)
Q Consensus       485 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (779)
                      .+. .+|..+..+++|+.|++++|+++. .+......++|+.|++++|++....+. ..                     
T Consensus       151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~---------------------  206 (394)
T COG4886         151 KIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPE-IE---------------------  206 (394)
T ss_pred             chh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchh-hh---------------------
Confidence            555 233344555555555555555552 222222455555666666655422111 00                     


Q ss_pred             hhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCC
Q 004005          565 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS  644 (779)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  644 (779)
                                                      .+..|++|.+++|++. ..+..+..+.++..+.+.+|++. ..+..++
T Consensus       207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~  252 (394)
T COG4886         207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG  252 (394)
T ss_pred             --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence                                            0113555666666433 34455555566666666666665 2345555


Q ss_pred             CCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005          645 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       645 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      .++++++|++++|.++...+  +..+.+++.||+++|.++...|
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            66666666666666653333  5556666666666666654444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=2.5e-10  Score=103.72  Aligned_cols=132  Identities=20%  Similarity=0.351  Sum_probs=53.7

Q ss_pred             CCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC
Q 004005           14 GFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL   93 (779)
Q Consensus        14 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l   93 (779)
                      .+.+..++++|+|+++.         +..  .+.++..+.+|+.|++++|.+.     .+. .+..+++|++|++++|++
T Consensus        14 ~~~n~~~~~~L~L~~n~---------I~~--Ie~L~~~l~~L~~L~Ls~N~I~-----~l~-~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQ---------IST--IENLGATLDKLEVLDLSNNQIT-----KLE-GLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S-------T-T----TT--EEE--SS--
T ss_pred             ccccccccccccccccc---------ccc--ccchhhhhcCCCEEECCCCCCc-----ccc-CccChhhhhhcccCCCCC
Confidence            34566679999999999         442  2334435779999999999994     342 567899999999999999


Q ss_pred             CCCcchhh-cCCCCCCEEEcCCCcccCCCCc-ccccCCCCCCEEEccCccccCcC--CcccccCCCCCcEEEccC
Q 004005           94 RGSLPWCM-ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIPI--SLEPLFNYSRLKIFNAEN  164 (779)
Q Consensus        94 ~~~~~~~~-~~l~~L~~L~L~~n~l~~~l~~-~~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~l~~L~~L~l~~  164 (779)
                      +.. ...+ ..+++|++|++++|++. .+.. ..++.+++|++|++.+|.++...  ....+..+|+|+.||-..
T Consensus        77 ~~i-~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   77 SSI-SEGLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -S--CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             Ccc-ccchHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            854 4445 57999999999999997 3322 35788999999999999987421  123457789999887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=1.1e-09  Score=117.57  Aligned_cols=102  Identities=32%  Similarity=0.440  Sum_probs=48.9

Q ss_pred             EEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCC-CCCEEEccCCCCCCCcCccccCCCCCcEEEccCC
Q 004005          334 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN  412 (779)
Q Consensus       334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  412 (779)
                      .++...+.+... ......++.++.|++.+|.+... +....... +|+.|++++|.+. .++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            345555544221 12222345566666666666533 22333332 5666666666555 23334455555555555555


Q ss_pred             cccCCcCcccCCCCCCcEEEccCCcCc
Q 004005          413 HLEGPIPVEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~  439 (779)
                      ++.. ++......+.|+.|++++|++.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc
Confidence            5552 2222224455555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=5.9e-11  Score=114.57  Aligned_cols=243  Identities=19%  Similarity=0.169  Sum_probs=147.7

Q ss_pred             CCCCCCCCCEEeCCCCccccccccccccc----ccchHHhhcCCCCcEEeCCCcccCCCCCCccc-------ccccCCCC
Q 004005           14 GFPHFKSLEHFDMDFTRIALNTSFIALNT----SFLQIISESMPSLKYLSLSYYTLGTNSSGTLD-------QGLCSLVH   82 (779)
Q Consensus        14 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~----~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~-------~~l~~l~~   82 (779)
                      ....+..+++++|++|.         +..    .+...+. +.+.|+.-++|+-.- ......+|       +++..+++
T Consensus        25 ~~~~~~s~~~l~lsgnt---------~G~EAa~~i~~~L~-~~~~L~~v~~sd~ft-GR~~~Ei~e~L~~l~~aL~~~~~   93 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNT---------FGTEAARAIAKVLA-SKKELREVNLSDMFT-GRLKDEIPEALKMLSKALLGCPK   93 (382)
T ss_pred             HhcccCceEEEeccCCc---------hhHHHHHHHHHHHh-hcccceeeehHhhhc-CCcHHHHHHHHHHHHHHHhcCCc
Confidence            35678899999999998         442    3344555 777888888876432 11122333       55667789


Q ss_pred             CCEEeccCCCCCCCcch----hhcCCCCCCEEEcCCCcccCCCCc-------------ccccCCCCCCEEEccCccccCc
Q 004005           83 LQELYIASNDLRGSLPW----CMANMTSLRILDVSSNQLTGSISS-------------SPLVHLTSIEELMLSNNYFQIP  145 (779)
Q Consensus        83 L~~L~L~~~~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~l~~-------------~~l~~l~~L~~L~l~~n~~~~~  145 (779)
                      |++||||.|.+....++    .+++++.|++|.|.+|.+. ....             .....-++|+++..++|.+...
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            99999999988755444    4567899999999999775 1111             1244567899999999987632


Q ss_pred             C---CcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCccc
Q 004005          146 I---SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE  222 (779)
Q Consensus       146 ~---~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  222 (779)
                      .   ....+...+.|+.+.+..|.+......                        .+...+..+++|+.|||..|.++..
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~------------------------al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVT------------------------ALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhH------------------------HHHHHHHhCCcceeeecccchhhhH
Confidence            1   123456678888888888877643221                        1223445566666666666655432


Q ss_pred             CChhh---hhcCCCCcEEEcCCCcCcCCCCcCc-----CCCCccCEEEccCCcCCCCCC----ccccccCCCCcEEECCC
Q 004005          223 FPNWL---LENNTKLETLFLVNDSLAGPFRLPI-----HSHKRLRQLDVSNNNIRGHIP----VKIGDVLPSLYVFNNSM  290 (779)
Q Consensus       223 ~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~l~~  290 (779)
                      ....+   +..+++|+++++.+|.+......++     ...|+|+.|.+.+|.|+....    ..+.. .|.|+.|++++
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLng  307 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNG  307 (382)
T ss_pred             HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCc
Confidence            22211   2234556666666666554322211     235677777777776652211    11111 46777777777


Q ss_pred             CCC
Q 004005          291 NAL  293 (779)
Q Consensus       291 n~~  293 (779)
                      |.+
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.3e-10  Score=107.74  Aligned_cols=130  Identities=34%  Similarity=0.376  Sum_probs=102.8

Q ss_pred             CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005          473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  552 (779)
Q Consensus       473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  552 (779)
                      ...|+++|+++|.|+ .+.+.+.-.|.++.|++++|.++..  +.+..+++|+.||+++|.++....- -          
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw-h----------  348 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW-H----------  348 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh-H----------
Confidence            367899999999998 4566777789999999999999833  3478899999999999987621100 0          


Q ss_pred             CCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc
Q 004005          553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  632 (779)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  632 (779)
                                                                 ..+.+++.|.|++|.+..  -..++.+-+|..||+++
T Consensus       349 -------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  349 -------------------------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             -------------------------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccc
Confidence                                                       113468899999999863  35677888999999999


Q ss_pred             cccccCCC-CCCCCCCCCCEEECCCCcCCC
Q 004005          633 NNLTGSIP-STFSNLKHVESLDLSNNKLNG  661 (779)
Q Consensus       633 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  661 (779)
                      |+|..... ..++++|-|++|.|.+|++.+
T Consensus       384 N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  384 NQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            99975432 578999999999999999984

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.3e-09  Score=124.52  Aligned_cols=85  Identities=28%  Similarity=0.364  Sum_probs=59.9

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT  130 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~  130 (779)
                      .++.|++|||++|.-    ...+|+.+++|.+||+|+|+++.+. .+|..+.++..|.+||+..+.-...+|. ....+.
T Consensus       569 ~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~  642 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQ  642 (889)
T ss_pred             hCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcc
Confidence            677777777777554    4677777777777777777777776 6777777777777777776654434444 455577


Q ss_pred             CCCEEEccCcc
Q 004005          131 SIEELMLSNNY  141 (779)
Q Consensus       131 ~L~~L~l~~n~  141 (779)
                      +|++|.+....
T Consensus       643 ~Lr~L~l~~s~  653 (889)
T KOG4658|consen  643 SLRVLRLPRSA  653 (889)
T ss_pred             cccEEEeeccc
Confidence            77777776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.6e-09  Score=80.71  Aligned_cols=60  Identities=52%  Similarity=0.671  Sum_probs=33.6

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  659 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  659 (779)
                      +|++|++++|++....+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544444555555555555555555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.4e-09  Score=81.13  Aligned_cols=61  Identities=41%  Similarity=0.634  Sum_probs=57.7

Q ss_pred             CCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcC
Q 004005          623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  683 (779)
Q Consensus       623 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  683 (779)
                      ++|++|++++|+++.+.++.|.++++|++|++++|+++.+.|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999988889999999999999999999988889999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=4.1e-10  Score=120.75  Aligned_cols=86  Identities=24%  Similarity=0.283  Sum_probs=57.8

Q ss_pred             cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCC---Cccc-ccCCCCCcEE
Q 004005          601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK---IPHQ-LVELKTLEVF  676 (779)
Q Consensus       601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~-~~~l~~L~~L  676 (779)
                      |+.+++++|++. ..+..+..+..+..|++.+|++...  ..+...+.+..+....|++...   .... ....+.++..
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            677888888877 3445677777888888888888743  2356666777777777777522   1111 3456677888


Q ss_pred             eccCCcCcccCCC
Q 004005          677 SVAYNNLSGEIPE  689 (779)
Q Consensus       677 ~l~~N~l~~~~p~  689 (779)
                      .+.+|+.....+.
T Consensus       311 ~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  311 TLELNPIRKISSL  323 (414)
T ss_pred             ccccCcccccccc
Confidence            8888887765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.78  E-value=2.5e-09  Score=122.28  Aligned_cols=92  Identities=23%  Similarity=0.303  Sum_probs=80.8

Q ss_pred             cCCCCCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEecc
Q 004005           10 VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIA   89 (779)
Q Consensus        10 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~   89 (779)
                      ++...|..++.|++|||++|.         -...+|..++ .+-+||+|+++++.+     ..+|..+.+++.|.+|++.
T Consensus       562 is~~ff~~m~~LrVLDLs~~~---------~l~~LP~~I~-~Li~LryL~L~~t~I-----~~LP~~l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNS---------SLSKLPSSIG-ELVHLRYLDLSDTGI-----SHLPSGLGNLKKLIYLNLE  626 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCC---------ccCcCChHHh-hhhhhhcccccCCCc-----cccchHHHHHHhhheeccc
Confidence            343458899999999999987         5678899999 999999999999998     6999999999999999999


Q ss_pred             CCCCCCCcchhhcCCCCCCEEEcCCCc
Q 004005           90 SNDLRGSLPWCMANMTSLRILDVSSNQ  116 (779)
Q Consensus        90 ~~~l~~~~~~~~~~l~~L~~L~L~~n~  116 (779)
                      .+.....+|.....+++|++|.+....
T Consensus       627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  627 VTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccchhhhcccccEEEeeccc
Confidence            988766667788889999999997765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=2.9e-09  Score=114.24  Aligned_cols=197  Identities=28%  Similarity=0.297  Sum_probs=113.6

Q ss_pred             ccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCcc
Q 004005          398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV  477 (779)
Q Consensus       398 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  477 (779)
                      +..+++|+.+++.+|.+..+. ..+..+++|++|++++|.|+...+                          +..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--------------------------l~~l~~L~  143 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--------------------------LSTLTLLK  143 (414)
T ss_pred             cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--------------------------hhhccchh
Confidence            334444555555555444221 114455556666666665542211                          33344466


Q ss_pred             EEeccCccCCCccCccccCCCCCCEEEccCCccccccc-ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCC
Q 004005          478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS  556 (779)
Q Consensus       478 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  556 (779)
                      .|++++|.|+..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.......               
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~---------------  205 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD---------------  205 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---------------
Confidence            666666666532  224446666666666666664333 1 355667777777777664211110               


Q ss_pred             CCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCC--CCCEEECcccc
Q 004005          557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT--RIQTLNLSHNN  634 (779)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~  634 (779)
                                                              ....+..+++..|.++...  .+..+.  .|+.+++++|+
T Consensus       206 ----------------------------------------~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  206 ----------------------------------------LLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             ----------------------------------------HHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCc
Confidence                                                    0112444466777766322  222233  38999999999


Q ss_pred             cccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCc
Q 004005          635 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  684 (779)
Q Consensus       635 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  684 (779)
                      +. ..+..+..+..+..|++++|++...  ..+.....+..+....|++.
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            98 4446788889999999999999744  23455666777777777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=6e-10  Score=104.96  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             CCCEEeccCCCCCCC-cchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCcc-ccCcCCcccccCCCCCcE
Q 004005           82 HLQELYIASNDLRGS-LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY-FQIPISLEPLFNYSRLKI  159 (779)
Q Consensus        82 ~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~  159 (779)
                      .||+|||++..|+.. +...++.|++|+.|.+.++++.+.|.. .+.+-.+|+.|+++.+. ++.....-.+.+++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            588888888877543 344567888889888888888877766 68888888999888764 443222234677888888


Q ss_pred             EEccCCccceee
Q 004005          160 FNAENNEIKAEI  171 (779)
Q Consensus       160 L~l~~~~l~~~~  171 (779)
                      |++++|.+..+.
T Consensus       265 LNlsWc~l~~~~  276 (419)
T KOG2120|consen  265 LNLSWCFLFTEK  276 (419)
T ss_pred             cCchHhhccchh
Confidence            888888776543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=5.2e-10  Score=105.37  Aligned_cols=186  Identities=19%  Similarity=0.109  Sum_probs=112.6

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCc-ccCCCCcccccCCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ-LTGSISSSPLVHLTS  131 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~l~~l~~  131 (779)
                      .+|++||||+..++   ...+--.+..+.+|+.|.|.++++.+.+...+++-.+|+.||++.+. ++..--.-.++.|+.
T Consensus       185 sRlq~lDLS~s~it---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVIT---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhhee---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            36999999988773   34454556788999999999999998888899999999999999875 221111124688999


Q ss_pred             CCEEEccCccccCcCCcccccC-CCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005          132 IEELMLSNNYFQIPISLEPLFN-YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE  210 (779)
Q Consensus       132 L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  210 (779)
                      |..|+++.|....+.-.-.... -.+|+.|+++++.-.-.....                         ...-..+++|.
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-------------------------~tL~~rcp~l~  316 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-------------------------STLVRRCPNLV  316 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-------------------------HHHHHhCCcee
Confidence            9999999987753321111122 246777777765422111111                         11123455555


Q ss_pred             EEEccCc-cCcccCChhhhhcCCCCcEEEcCCCcCcC-CCCcCcCCCCccCEEEccCCc
Q 004005          211 YVDLSHI-KMNGEFPNWLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNN  267 (779)
Q Consensus       211 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~  267 (779)
                      +|||+++ .++......+ -.++.|++|.++.|.... .....+...|.|.+|++.++-
T Consensus       317 ~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            5555554 2332222222 355666666666654221 111345566777777777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.55  E-value=3e-09  Score=105.30  Aligned_cols=210  Identities=15%  Similarity=-0.039  Sum_probs=109.7

Q ss_pred             CCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC-CCCcchhh-cCCCCCCEEEcCCCc-ccCCCCcccccCCC
Q 004005           54 SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL-RGSLPWCM-ANMTSLRILDVSSNQ-LTGSISSSPLVHLT  130 (779)
Q Consensus        54 ~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~l~~~~l~~l~  130 (779)
                      .|+.|.++++.-  ++...+-....+++++++|++.+|.. ++..-..+ ..|++|++|++..|. ++...-......++
T Consensus       139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            677888877753  22334444456778888888887753 33222222 467888888887753 33111111234678


Q ss_pred             CCCEEEccCccc-cCcCCcccccCCCCCcEEEccCCccceeeccccc-ccCCcccccEEecCCCCCCCCCC-chhhcCCC
Q 004005          131 SIEELMLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIKAEITESHS-LIAPKFQLNTLSLSSNYGDGFIF-PKFLYHQH  207 (779)
Q Consensus       131 ~L~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~  207 (779)
                      +|++|+++.+.- ++..-.....+++.++.+...+|.=.+  .+.+. .-..+..+.++++.++..+++.. ...-..+.
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            888888887753 332111234556666666555442111  11111 11222245556654555554432 12223456


Q ss_pred             CccEEEccCccC-cccCChhhhhcCCCCcEEEcCCCcC-cCCCCcCc-CCCCccCEEEccCCc
Q 004005          208 DLEYVDLSHIKM-NGEFPNWLLENNTKLETLFLVNDSL-AGPFRLPI-HSHKRLRQLDVSNNN  267 (779)
Q Consensus       208 ~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~n~  267 (779)
                      .|+.++.+++.- ++.....+.+++++|+.|.+..|+- +......+ .+++.|+.+++.++.
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            777777776643 3333334455677777777777752 22111122 244566666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.45  E-value=7.4e-09  Score=102.57  Aligned_cols=289  Identities=19%  Similarity=0.136  Sum_probs=168.6

Q ss_pred             CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC-CCCCc
Q 004005           19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND-LRGSL   97 (779)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~-l~~~~   97 (779)
                      ..||.|.+.|+.        .....-...+...++++++|++.+|..  +....+-..-..+++|++|+|..|. +++..
T Consensus       138 g~lk~LSlrG~r--------~v~~sslrt~~~~CpnIehL~l~gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~  207 (483)
T KOG4341|consen  138 GFLKELSLRGCR--------AVGDSSLRTFASNCPNIEHLALYGCKK--ITDSSLLSLARYCRKLRHLNLHSCSSITDVS  207 (483)
T ss_pred             cccccccccccc--------cCCcchhhHHhhhCCchhhhhhhccee--ccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence            367888888887        122222233334889999999988863  2223333333568899999999863 44433


Q ss_pred             ch-hhcCCCCCCEEEcCCCc-ccC-CCCcccccCCCCCCEEEccCccccC-cCCcccccCCCCCcEEEccCCc-cceeec
Q 004005           98 PW-CMANMTSLRILDVSSNQ-LTG-SISSSPLVHLTSIEELMLSNNYFQI-PISLEPLFNYSRLKIFNAENNE-IKAEIT  172 (779)
Q Consensus        98 ~~-~~~~l~~L~~L~L~~n~-l~~-~l~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~~~-l~~~~~  172 (779)
                      -. -...|++|++|+++.|. +++ .+.. ..+++..++.+.+.+|.-.. ......-..+.-+.++++..+. ++++  
T Consensus       208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~--  284 (483)
T KOG4341|consen  208 LKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE--  284 (483)
T ss_pred             HHHHHHhhhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch--
Confidence            33 33578999999999874 333 2222 46677777777666653211 0000111334445666655654 2322  


Q ss_pred             ccccccCCcccccEEecCCCCCCCCCCchhh-cCCCCccEEEccCcc-CcccCChhhhhcCCCCcEEEcCCCcCcC--CC
Q 004005          173 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFL-YHQHDLEYVDLSHIK-MNGEFPNWLLENNTKLETLFLVNDSLAG--PF  248 (779)
Q Consensus       173 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~  248 (779)
                      ..+.....+..|+.++.++....+......+ .++++|+.+.+++|+ +++.....+..+++.|+.+++.++....  .+
T Consensus       285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL  364 (483)
T KOG4341|consen  285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL  364 (483)
T ss_pred             HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence            2233344556889999866666555444444 567899999999996 5545555666789999999999886532  23


Q ss_pred             CcCcCCCCccCEEEccCCcC-CCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhh
Q 004005          249 RLPIHSHKRLRQLDVSNNNI-RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV  327 (779)
Q Consensus       249 ~~~~~~~~~L~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  327 (779)
                      ...-..++.|+++.+++|.. ++.....                     ....-..+..|+.+.+++++...+-......
T Consensus       365 ~sls~~C~~lr~lslshce~itD~gi~~---------------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  365 ASLSRNCPRLRVLSLSHCELITDEGIRH---------------------LSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             hhhccCCchhccCChhhhhhhhhhhhhh---------------------hhhccccccccceeeecCCCCchHHHHHHHh
Confidence            33445678888888887743 2110000                     0111223445566666666543232233334


Q ss_pred             CCCCCCEEEccCcc
Q 004005          328 GCVNLQFLALSNNN  341 (779)
Q Consensus       328 ~~~~L~~L~l~~n~  341 (779)
                      .+++|+.+++..++
T Consensus       424 ~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  424 ICRNLERIELIDCQ  437 (483)
T ss_pred             hCcccceeeeechh
Confidence            46666666666553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=7.2e-08  Score=91.21  Aligned_cols=209  Identities=19%  Similarity=0.143  Sum_probs=119.0

Q ss_pred             CCCCCCEEEccCCcCccccch-hhhhCCCCCCEEEccCcccCcc--CcccCCCCCCCCEEEccCCcCCccCCccc-cCCC
Q 004005          303 NMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQFLALSNNNLQGH--LFSRNFNLTNLQWLQLEGNRFVGEIPQSL-SKCS  378 (779)
Q Consensus       303 ~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~  378 (779)
                      ....++.+.+.++.|..+... .+...++.++++++.+|.+...  +...+.++|.|+.|+++.|++...+. .+ ....
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~  121 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLK  121 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCccccc
Confidence            334555666667766533322 3334567888888888888742  22344678888888888888774432 22 3566


Q ss_pred             CCCEEEccCCCCCC-CcCccccCCCCCcEEEccCCcccCC--cCcccCCC-CCCcEEEccCCcCcc---CCCCccCcccc
Q 004005          379 SLEGLYLNNNSLLG-KIPRWLGNLTRLQYIIMPNNHLEGP--IPVEFCQL-DSLQILDISDNNISG---SLPSCFHPLSI  451 (779)
Q Consensus       379 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~l~~---~~~~~~~~~~L  451 (779)
                      +|++|-+.+..+.- .....+..++.++++.++.|.....  ........ +.+.++....|...-   ...-.-.++++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            78888887765531 2234456677778887777743311  11111111 234444443332110   00000114566


Q ss_pred             cEEEccCcccccccCcccccCCCCccEEeccCccCCCc-cCccccCCCCCCEEEccCCcccc
Q 004005          452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS-IPDWVDGLSQLSHLILGHNNLEG  512 (779)
Q Consensus       452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~  512 (779)
                      ..+.+..|++...-....+...+.+..|+|+.++|... ..+++.+++.|..|.++++.+.+
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            77777777665544444455566666777777776532 22456677777777777777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.37  E-value=5.6e-08  Score=90.70  Aligned_cols=222  Identities=18%  Similarity=0.198  Sum_probs=115.7

Q ss_pred             hHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC---CCCcc-------hhhcCCCCCCEEEcCCC
Q 004005           46 QIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL---RGSLP-------WCMANMTSLRILDVSSN  115 (779)
Q Consensus        46 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l---~~~~~-------~~~~~l~~L~~L~L~~n  115 (779)
                      +.+. .+..+..++||+|.|+.-....+...+.+-.+|++-+++.-..   .+.++       .++-+|++|+..+||.|
T Consensus        24 eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            3344 5677777888888775555555666666667777777765421   22222       34567788888888888


Q ss_pred             cccCCCCc---ccccCCCCCCEEEccCccccCcCCc-------------ccccCCCCCcEEEccCCccceeecccccccC
Q 004005          116 QLTGSISS---SPLVHLTSIEELMLSNNYFQIPISL-------------EPLFNYSRLKIFNAENNEIKAEITESHSLIA  179 (779)
Q Consensus       116 ~l~~~l~~---~~l~~l~~L~~L~l~~n~~~~~~~~-------------~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  179 (779)
                      .+....|.   +.+++-+.|++|.+++|.+. ++..             .....-+.|+......|++.......+.   
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a---  178 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA---  178 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH---
Confidence            77644443   13456677888888887653 1111             0112334555555555555433222211   


Q ss_pred             CcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhh----hhcCCCCcEEEcCCCcCcCC----CCcC
Q 004005          180 PKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL----LENNTKLETLFLVNDSLAGP----FRLP  251 (779)
Q Consensus       180 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~  251 (779)
                                           ..+.....|+++.+..|.+.......+    ...+.+|+.|++++|-++..    ....
T Consensus       179 ---------------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a  237 (388)
T COG5238         179 ---------------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA  237 (388)
T ss_pred             ---------------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence                                 122223455566665555543211111    22455666666666655431    1223


Q ss_pred             cCCCCccCEEEccCCcCCCCCCcccccc-----CCCCcEEECCCCCC
Q 004005          252 IHSHKRLRQLDVSNNNIRGHIPVKIGDV-----LPSLYVFNNSMNAL  293 (779)
Q Consensus       252 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~-----l~~L~~L~l~~n~~  293 (779)
                      +...+.|++|.+.+|-++......+...     .|+|..|...+|.+
T Consensus       238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            3334456666666665553333322221     34555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=8.3e-08  Score=90.81  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=67.1

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccc-cCCCCCCEEeccCCCCCCC--cchhhcCCCCCCEEEcCCCcccCCCCcccc-cC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGL-CSLVHLQELYIASNDLRGS--LPWCMANMTSLRILDVSSNQLTGSISSSPL-VH  128 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l-~~l~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l-~~  128 (779)
                      ..++.|.+.++.|...+...   .| ...+++++|||.+|.|++.  +...+.+++.|++|+++.|++...|..  + ..
T Consensus        45 ra~ellvln~~~id~~gd~~---~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p  119 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVM---LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLP  119 (418)
T ss_pred             cchhhheecCCCCCcchhHH---HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Cccc
Confidence            34456666666664432221   22 2456788888888877643  444567788888888888877643332  2 35


Q ss_pred             CCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCc
Q 004005          129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNE  166 (779)
Q Consensus       129 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~  166 (779)
                      +.+|++|-+.+..+......+.+..++.++.|.++.|.
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            56777777777766543333456667777777777663

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.26  E-value=2.2e-08  Score=105.79  Aligned_cols=125  Identities=26%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005          331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (779)
                      +|...+.++|.+.. ....+.-++.|+.|+|++|+++...  .+..+++|++||++.|.+.....-...++. |..|.++
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            34455555555542 2334444556666666666665432  455666666666666665532222222333 6666666


Q ss_pred             CCcccCCcCcccCCCCCCcEEEccCCcCccCCC--CccCcccccEEEccCccc
Q 004005          411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNML  461 (779)
Q Consensus       411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~~  461 (779)
                      +|.++..  ..+.++.+|+.||+++|-+.+...  ..+.+..|+.|.+.||++
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6655532  234556666666666665543221  122244556666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=1.4e-08  Score=107.26  Aligned_cols=181  Identities=24%  Similarity=0.231  Sum_probs=100.4

Q ss_pred             CcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCC--C-------CcccCccccCCCCCCEEEccCCcCcc
Q 004005          249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA--L-------DGSIPSSFGNMKFLQILDLSNNHLTG  319 (779)
Q Consensus       249 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~--~-------~~~~~~~~~~l~~L~~L~Ls~n~i~~  319 (779)
                      |..+..+.+|++|.+.+|++..  ...+......|+.|-..+.-  +       .+.+..++ ....|.+.+.+.|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence            4455666777777777776652  11111111234444332210  0       01111111 1135666677777765 


Q ss_pred             ccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCcccc
Q 004005          320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG  399 (779)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  399 (779)
                      .+...+. -++.++.|+|++|+++..  +.+..+++|++|||++|.+..+.--...++. |+.|.+++|.++..  ..+.
T Consensus       178 ~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie  251 (1096)
T KOG1859|consen  178 LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE  251 (1096)
T ss_pred             hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence            4444332 367777777777777653  3566777777777777777744333334444 77777777776532  3456


Q ss_pred             CCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCc
Q 004005          400 NLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       400 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~  439 (779)
                      ++.+|+.|++++|-+.+.-. ..+..+..|+.|++.+|.+-
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            67777777777776654321 12345566777777777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=2.7e-07  Score=86.30  Aligned_cols=90  Identities=21%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             CCccCEEEccCCcCCCCCCc----cccccCCCCcEEECCCCCCCcc----cCccccCCCCCCEEEccCCcCccccchhhh
Q 004005          255 HKRLRQLDVSNNNIRGHIPV----KIGDVLPSLYVFNNSMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHLA  326 (779)
Q Consensus       255 ~~~L~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  326 (779)
                      ...|+++.+..|.|.-....    .-...+++|++|++.+|.++..    ...++...+.|+.|.+.+|-++......++
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            34566666666655411000    0011246777777777766532    233455667788888888877755554443


Q ss_pred             h-----CCCCCCEEEccCcccCc
Q 004005          327 V-----GCVNLQFLALSNNNLQG  344 (779)
Q Consensus       327 ~-----~~~~L~~L~l~~n~l~~  344 (779)
                      .     ..|+|..|...+|.+.+
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcC
Confidence            2     34677777777776553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=1.7e-07  Score=78.19  Aligned_cols=88  Identities=20%  Similarity=0.322  Sum_probs=50.1

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      .++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||.-+|.+. .+|-++-..+..-..++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            3566666666666 45555666677777777777666 45555555666666666666665 333222222223333445


Q ss_pred             CCcCcccCCCC
Q 004005          680 YNNLSGEIPEW  690 (779)
Q Consensus       680 ~N~l~~~~p~~  690 (779)
                      ++++.+.+|..
T Consensus       155 nepl~~~~~~k  165 (177)
T KOG4579|consen  155 NEPLGDETKKK  165 (177)
T ss_pred             CCcccccCccc
Confidence            55666555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=2.1e-06  Score=95.97  Aligned_cols=160  Identities=21%  Similarity=0.304  Sum_probs=108.2

Q ss_pred             CCCcEEeCCCcccCCCCCCccccccc-CCCCCCEEeccCCCCCCC-cchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGS-LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT  130 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~  130 (779)
                      .+|++||+++...-   ...-|..++ .+|.|+.|.+.+-.+... ......++++|..||+|+++++ .+.  .+++++
T Consensus       122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK  195 (699)
T ss_pred             HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence            58999999886531   233344444 479999999988766433 3445678899999999999987 564  589999


Q ss_pred             CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005          131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE  210 (779)
Q Consensus       131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  210 (779)
                      +|+.|.+.+-.+........+.++++|+.||+|........           .+....+           +.-..+|+|+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~qYl-----------ec~~~LpeLr  253 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIEQYL-----------ECGMVLPELR  253 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHHHHH-----------HhcccCcccc
Confidence            99999988887775455557788899999998876544321           0111111           1122367889


Q ss_pred             EEEccCccCcccCChhhhhcCCCCcEEEcC
Q 004005          211 YVDLSHIKMNGEFPNWLLENNTKLETLFLV  240 (779)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  240 (779)
                      .||.+++.+.+.+-+.+...-++|+.+..-
T Consensus       254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  254 FLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             EEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            999988887766666555555556554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.96  E-value=1.6e-05  Score=71.55  Aligned_cols=111  Identities=21%  Similarity=0.280  Sum_probs=83.0

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCccc--CCCCcccccC
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT--GSISSSPLVH  128 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~l~~~~l~~  128 (779)
                      -......+||++|++     ..++ .|..++.|.+|.|++|+|+...|.--.-+++|+.|.|.+|.+.  |.+..  +..
T Consensus        40 ~~d~~d~iDLtdNdl-----~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~  111 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDL-----RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LAS  111 (233)
T ss_pred             cccccceecccccch-----hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hcc
Confidence            445778889999988     2332 4557889999999999998777776667788999999998876  23433  778


Q ss_pred             CCCCCEEEccCccccC--cCCcccccCCCCCcEEEccCCccce
Q 004005          129 LTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKA  169 (779)
Q Consensus       129 l~~L~~L~l~~n~~~~--~~~~~~l~~l~~L~~L~l~~~~l~~  169 (779)
                      |++|++|.+-+|.++.  ......+..+++|+.||+.+....+
T Consensus       112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence            8899999999888763  2333456788888888888765543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1.3e-05  Score=54.32  Aligned_cols=36  Identities=31%  Similarity=0.576  Sum_probs=17.7

Q ss_pred             CCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCccc
Q 004005           82 HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT  118 (779)
Q Consensus        82 ~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~  118 (779)
                      +|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33444555555555555555554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.72  E-value=6.2e-05  Score=67.88  Aligned_cols=131  Identities=22%  Similarity=0.305  Sum_probs=93.4

Q ss_pred             CcEEeCCCcccCCCCCCccccccc-CCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCC
Q 004005           55 LKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE  133 (779)
Q Consensus        55 L~~L~Ls~~~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~  133 (779)
                      =+.++|++.++..++.      ++ -+.....+||++|.+...  ..|..++.|++|.+++|+++ .|.+..-..+++|+
T Consensus        21 e~e~~LR~lkip~ien------lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN------LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK   91 (233)
T ss_pred             ccccccccccccchhh------ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence            4566676666522111      22 245788999999988643  46788999999999999998 66663444678899


Q ss_pred             EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005          134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD  213 (779)
Q Consensus       134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  213 (779)
                      .|.+.+|.+........+..+++|++|.+-+|.+.....                    +     -...+..+++|+.||
T Consensus        92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~--------------------Y-----R~yvl~klp~l~~LD  146 (233)
T KOG1644|consen   92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN--------------------Y-----RLYVLYKLPSLRTLD  146 (233)
T ss_pred             eEEecCcchhhhhhcchhccCCccceeeecCCchhcccC--------------------c-----eeEEEEecCcceEee
Confidence            999999999865666778999999999999988765321                    0     012345667888888


Q ss_pred             ccCccC
Q 004005          214 LSHIKM  219 (779)
Q Consensus       214 l~~~~~  219 (779)
                      ..+-..
T Consensus       147 F~kVt~  152 (233)
T KOG1644|consen  147 FQKVTR  152 (233)
T ss_pred             hhhhhH
Confidence            776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=3.7e-05  Score=52.04  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG   95 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~   95 (779)
                      ++|++|++++|++     ..+|..+++|++|++|++++|++++
T Consensus         1 ~~L~~L~l~~N~i-----~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQI-----TDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCC-----cccCchHhCCCCCCEEEecCCCCCC
Confidence            4788999999988     5677678899999999999998874

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.65  E-value=0.00011  Score=64.78  Aligned_cols=122  Identities=19%  Similarity=0.244  Sum_probs=43.9

Q ss_pred             cccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCC
Q 004005          300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS  379 (779)
Q Consensus       300 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  379 (779)
                      +|.++++|+.+.+.. .+. .++...+.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            345555555555543 233 444444555555555555443 4444444455555555555543 233233344555555


Q ss_pred             CCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCC
Q 004005          380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL  428 (779)
Q Consensus       380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  428 (779)
                      ++.+++..+ +.......|.+. +++.+.+.. .+..+....|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555443 332333444444 555555543 2222333444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.59  E-value=5.3e-06  Score=69.54  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=77.9

Q ss_pred             CcceEEccCCcccccCcccc-cCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005          600 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  678 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  678 (779)
                      .|+..+|++|.+.. .|..| ...+..+.|++++|.|+ ..|..++.++.|+.|++++|++. ..|..+..+.++..||.
T Consensus        54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            57888999999984 55555 44568899999999999 56777999999999999999997 67777777889999999


Q ss_pred             cCCcCcccCCCCccccccCCcc-cccCCCCCCCC
Q 004005          679 AYNNLSGEIPEWKAQFATFNES-SYEGNTFLCGL  711 (779)
Q Consensus       679 ~~N~l~~~~p~~~~~~~~~~~~-~~~~n~~~c~~  711 (779)
                      .+|.+- .+|.. .-+.+...+ .+..+||--+|
T Consensus       131 ~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  131 PENARA-EIDVD-LFYSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             CCCccc-cCcHH-HhccccHHHHHhcCCcccccC
Confidence            888876 44432 223333332 23445554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00019  Score=73.94  Aligned_cols=53  Identities=11%  Similarity=0.145  Sum_probs=24.4

Q ss_pred             ccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCC
Q 004005          449 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN  508 (779)
Q Consensus       449 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  508 (779)
                      ..++.|++++|.+. .+|.  +  .++|+.|.+++|.-....|+.+.  ++|+.|++++|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            44555666555442 2231  1  13455555555433333443331  35555555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.00019  Score=63.19  Aligned_cols=123  Identities=21%  Similarity=0.228  Sum_probs=54.6

Q ss_pred             cccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCC
Q 004005          275 KIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT  354 (779)
Q Consensus       275 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  354 (779)
                      ..+..+++|+.+.+.. .+......+|..+++|+.+.+..+ +. .++...+.++++++.+.+.. .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            3333344555555543 333344555666666777777664 44 56666666666677777754 44444555666677


Q ss_pred             CCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCC
Q 004005          355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL  404 (779)
Q Consensus       355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  404 (779)
                      +|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777777654 444445566666 777777665 3343445566666555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=5e-05  Score=85.23  Aligned_cols=58  Identities=17%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             CCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccC
Q 004005          206 QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN  265 (779)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  265 (779)
                      +|.|+.|.+++-.+...--..++.++|+|..||++++.++..  ..++.+++|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence            445555555444332211122234445555555555444432  2334444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00016  Score=68.43  Aligned_cols=84  Identities=24%  Similarity=0.342  Sum_probs=39.1

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCC--CCCCCcchhhcCCCCCCEEEcCCCccc--CCCCcccc
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASN--DLRGSLPWCMANMTSLRILDVSSNQLT--GSISSSPL  126 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~--~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~l~~~~l  126 (779)
                      .+..|+.|++.+..+++.  ..+|    .|++|++|.++.|  ++.+.++.....+++|++|++++|++.  .+++.  +
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--L  112 (260)
T ss_pred             cccchhhhhhhccceeec--ccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--h
Confidence            334555555555444221  2222    4555555555555  444444444444455555555555544  12222  3


Q ss_pred             cCCCCCCEEEccCccc
Q 004005          127 VHLTSIEELMLSNNYF  142 (779)
Q Consensus       127 ~~l~~L~~L~l~~n~~  142 (779)
                      .++.+|..|++.+|..
T Consensus       113 ~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSV  128 (260)
T ss_pred             hhhcchhhhhcccCCc
Confidence            4444455555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00013  Score=69.00  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=64.7

Q ss_pred             ccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCC--cccCCCCcccccCCCCCCEEEccCccccCcCCcccccCC
Q 004005           77 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNY  154 (779)
Q Consensus        77 l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l  154 (779)
                      .-.+..|+.|.+.+..++..  ..|-.+++|+.|+++.|  .+.+.++. ...++++|++|++++|++...-....+..+
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhh
Confidence            34556777777777776533  34567788899999888  55556665 566778899999999888754445567777


Q ss_pred             CCCcEEEccCCccce
Q 004005          155 SRLKIFNAENNEIKA  169 (779)
Q Consensus       155 ~~L~~L~l~~~~l~~  169 (779)
                      .+|..|++..|..+.
T Consensus       116 ~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCccc
Confidence            888888888877654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.11  E-value=0.003  Score=65.37  Aligned_cols=136  Identities=16%  Similarity=0.178  Sum_probs=58.8

Q ss_pred             cCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCE
Q 004005          230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  309 (779)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  309 (779)
                      .+.+++.|++++|.+... |   .-.++|++|.+++|.-...+|..+   .++|+.|++++|.....+|.      +|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccce
Confidence            345556666665544422 1   112346666666543222444322   13566666666522222332      3555


Q ss_pred             EEccCCcCccccchhhhhCCCCCCEEEccCcccC-c-cCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 004005          310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ-G-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN  387 (779)
Q Consensus       310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  387 (779)
                      |+++.+... .++    .-.++|+.|.+.+++.. . ..+..  -.++|++|++++|... ..|..+.  .+|+.|+++.
T Consensus       117 L~L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCc-ccc----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            555544332 111    01234555555332210 0 00000  1145666666666544 2333332  3566666554


Q ss_pred             C
Q 004005          388 N  388 (779)
Q Consensus       388 n  388 (779)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            4

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.02  E-value=0.00011  Score=81.70  Aligned_cols=193  Identities=23%  Similarity=0.156  Sum_probs=84.0

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCC-CCCCC----cchhhcCCCCCCEEEcCCCc-ccCCCCcc
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASN-DLRGS----LPWCMANMTSLRILDVSSNQ-LTGSISSS  124 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~l~~~  124 (779)
                      .++.|+.|.+.++.-  +....+-.....+++|+.|+++++ .....    .......+++|+.|+++++. ++ ..--.
T Consensus       186 ~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLS  262 (482)
T ss_pred             hCchhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHH
Confidence            455566666555432  000112233445566666666552 11111    11233445666666666555 33 11111


Q ss_pred             ccc-CCCCCCEEEccCcc-ccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchh
Q 004005          125 PLV-HLTSIEELMLSNNY-FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKF  202 (779)
Q Consensus       125 ~l~-~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  202 (779)
                      .+. .+++|++|.+.++. ++..........++.|++|+++++....... .......+++++.|.+...          
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-l~~~~~~c~~l~~l~~~~~----------  331 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-LEALLKNCPNLRELKLLSL----------  331 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-HHHHHHhCcchhhhhhhhc----------
Confidence            122 25666666655554 3332222333455666666666555431110 0001122334444443111          


Q ss_pred             hcCCCCccEEEccCccCcc--cCChhhhhcCCCCcEEEcCCCcCcCCC-CcCcCCCCcc
Q 004005          203 LYHQHDLEYVDLSHIKMNG--EFPNWLLENNTKLETLFLVNDSLAGPF-RLPIHSHKRL  258 (779)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L  258 (779)
                       ..+..++.+.+.++....  .........+++++.+.+..+...... ...+..++.|
T Consensus       332 -~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  332 -NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             -CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence             113445555555443221  333444566777777777666633222 2334445544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=7.1e-05  Score=70.76  Aligned_cols=100  Identities=27%  Similarity=0.327  Sum_probs=61.1

Q ss_pred             CCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCC-
Q 004005           18 FKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS-   96 (779)
Q Consensus        18 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~-   96 (779)
                      +.+.+.|+..||.         +.+.   .+.+.|+.|++|.||-|.|     +.+ +.+..+++|++|.|..|.|.+. 
T Consensus        18 l~~vkKLNcwg~~---------L~DI---sic~kMp~lEVLsLSvNkI-----ssL-~pl~rCtrLkElYLRkN~I~sld   79 (388)
T KOG2123|consen   18 LENVKKLNCWGCG---------LDDI---SICEKMPLLEVLSLSVNKI-----SSL-APLQRCTRLKELYLRKNCIESLD   79 (388)
T ss_pred             HHHhhhhcccCCC---------ccHH---HHHHhcccceeEEeecccc-----ccc-hhHHHHHHHHHHHHHhcccccHH
Confidence            4566677777777         4432   1223777888888888877     333 2466778888888888777643 


Q ss_pred             cchhhcCCCCCCEEEcCCCcccCCCCc----ccccCCCCCCEE
Q 004005           97 LPWCMANMTSLRILDVSSNQLTGSISS----SPLVHLTSIEEL  135 (779)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~l~~~l~~----~~l~~l~~L~~L  135 (779)
                      .-.++.++++|+.|.|..|.-.|.-+.    ..++-+++|+.|
T Consensus        80 EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   80 ELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             HHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence            224567777777777777665543222    134445555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.75  E-value=0.00012  Score=81.30  Aligned_cols=35  Identities=29%  Similarity=0.179  Sum_probs=15.9

Q ss_pred             ccEEeccCccCCCc-cCccccC-CCCCCEEEccCCcc
Q 004005          476 LVTLDLSYNRLNGS-IPDWVDG-LSQLSHLILGHNNL  510 (779)
Q Consensus       476 L~~L~L~~n~i~~~-~~~~~~~-l~~L~~L~L~~n~l  510 (779)
                      ++.|+++.+..... .-..... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            56666666543311 1111111 45556666666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.00018  Score=68.08  Aligned_cols=83  Identities=22%  Similarity=0.157  Sum_probs=49.5

Q ss_pred             CCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCc-ccccCCC
Q 004005           52 MPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHLT  130 (779)
Q Consensus        52 l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~-~~l~~l~  130 (779)
                      +.+.+.|++=+|.++++.      ...+|+.|++|.|+-|+|+..  ..+..|++|++|.|..|.|. .+.+ .-+.+++
T Consensus        18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            346667777777764431      234677777777777777644  23666777777777776665 2322 1245666


Q ss_pred             CCCEEEccCcccc
Q 004005          131 SIEELMLSNNYFQ  143 (779)
Q Consensus       131 ~L~~L~l~~n~~~  143 (779)
                      +|+.|-|..|...
T Consensus        89 sLr~LWL~ENPCc  101 (388)
T KOG2123|consen   89 SLRTLWLDENPCC  101 (388)
T ss_pred             hhhhHhhccCCcc
Confidence            6666666666544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.47  E-value=0.00034  Score=75.15  Aligned_cols=113  Identities=24%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             CcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchh----hcCC-CCCCEEEcCCCcccC----CCCccc
Q 004005           55 LKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC----MANM-TSLRILDVSSNQLTG----SISSSP  125 (779)
Q Consensus        55 L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~----~l~~~~  125 (779)
                      +..|.|.+|.+.+.+...+..++...++|+.|++++|.+.+.....    +... ..|++|++..|.+++    .+.. .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence            5566666666655555555566666666666666666665332221    2222 345555665555542    1222 3


Q ss_pred             ccCCCCCCEEEccCccccCc---CCccc----ccCCCCCcEEEccCCccc
Q 004005          126 LVHLTSIEELMLSNNYFQIP---ISLEP----LFNYSRLKIFNAENNEIK  168 (779)
Q Consensus       126 l~~l~~L~~L~l~~n~~~~~---~~~~~----l~~l~~L~~L~l~~~~l~  168 (779)
                      +.....++.++++.|.+...   .....    +....++++|.+.+|.++
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            44456666666666655310   00011    223556777777777665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.08  E-value=0.00029  Score=75.68  Aligned_cols=194  Identities=21%  Similarity=0.143  Sum_probs=102.7

Q ss_pred             CCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccCCCCc---ccccCC-CCCCEEEccCccccCcCC---ccc
Q 004005           82 HLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTGSISS---SPLVHL-TSIEELMLSNNYFQIPIS---LEP  150 (779)
Q Consensus        82 ~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~---~~l~~l-~~L~~L~l~~n~~~~~~~---~~~  150 (779)
                      .+++|.|.+|.+.+.    +...+..+..|+.|++++|.+.+.--.   ..+... ..|++|++..|.++....   ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            388899999988654    344667888999999999988632111   022332 456778888887764221   123


Q ss_pred             ccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhh---
Q 004005          151 LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---  227 (779)
Q Consensus       151 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---  227 (779)
                      +.....++.++++.|.+..........     .               ++..+....++++|.+++|.++......+   
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-----~---------------l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~  227 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQ-----A---------------LESAASPLSSLETLKLSRCGVTSSSCALLDEV  227 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhh-----h---------------hhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence            445667777888877765221111000     0               00011223445555555555442111111   


Q ss_pred             hhcCCC-CcEEEcCCCcCcCC----CCcCcCCC-CccCEEEccCCcCCCCCCccccc---cCCCCcEEECCCCCCCc
Q 004005          228 LENNTK-LETLFLVNDSLAGP----FRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGD---VLPSLYVFNNSMNALDG  295 (779)
Q Consensus       228 ~~~~~~-L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~---~l~~L~~L~l~~n~~~~  295 (779)
                      ++..+. +..+++..|.+.+.    ....+..+ +.+++++++.|.+++........   .++.++.+.++.|.+..
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            122222 44456666555432    11223333 56677777777776443333222   13467777777777653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.89  E-value=0.021  Score=31.89  Aligned_cols=9  Identities=67%  Similarity=0.649  Sum_probs=3.3

Q ss_pred             eEEccCCcc
Q 004005          603 GLDLSCNKL  611 (779)
Q Consensus       603 ~L~Ls~n~l  611 (779)
                      +||+++|++
T Consensus         4 ~Ldls~n~l   12 (22)
T PF00560_consen    4 YLDLSGNNL   12 (22)
T ss_dssp             EEEETSSEE
T ss_pred             EEECCCCcC
Confidence            333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=92.66  E-value=0.083  Score=66.69  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=52.5

Q ss_pred             ECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          653 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQD  732 (779)
Q Consensus       653 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~  732 (779)
                      ||++|+|+.+.+..|..+++|+.|+|++|+|.|.|.-  .++..|...   .+...-......|..|...+++++.+...
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L--~WL~~WL~~---~~v~v~~~~~i~CasP~~LrG~~L~~l~~   75 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL--ARLPRWAEE---KGVKVRQPEAALCAGPGALAGQPLLGIPL   75 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc--HHHHHHHHh---cCccccCCcccCCCCChHHCCCCcccCCc
Confidence            6889999988888899999999999999999999874  233322211   11111111112499999888888877665


Q ss_pred             CC
Q 004005          733 DN  734 (779)
Q Consensus       733 ~~  734 (779)
                      .+
T Consensus        76 ~d   77 (2740)
T TIGR00864        76 LD   77 (2740)
T ss_pred             cc
Confidence            54

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.33  E-value=0.0049  Score=57.14  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=61.7

Q ss_pred             HHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccc
Q 004005           47 IISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL  126 (779)
Q Consensus        47 ~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l  126 (779)
                      .+. .+++.++||++.+++     ..+-.-++.++.|..|+++.|.+. ..|..++.+..+++++++.|+.+ ..|. ++
T Consensus        37 ei~-~~kr~tvld~~s~r~-----vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~  107 (326)
T KOG0473|consen   37 EIA-SFKRVTVLDLSSNRL-----VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQ  107 (326)
T ss_pred             hhh-ccceeeeehhhhhHH-----HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cc
Confidence            344 666777777777776     334445666777777777777765 56777777777777777777776 6676 67


Q ss_pred             cCCCCCCEEEccCcccc
Q 004005          127 VHLTSIEELMLSNNYFQ  143 (779)
Q Consensus       127 ~~l~~L~~L~l~~n~~~  143 (779)
                      ++.+.+++++..+|.+.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            77788877777777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.91  E-value=0.11  Score=26.87  Aligned_cols=12  Identities=58%  Similarity=0.886  Sum_probs=4.1

Q ss_pred             CCCEEEcCCCcc
Q 004005          106 SLRILDVSSNQL  117 (779)
Q Consensus       106 ~L~~L~L~~n~l  117 (779)
                      +|++|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.62  E-value=0.006  Score=56.54  Aligned_cols=94  Identities=14%  Similarity=0.097  Sum_probs=61.5

Q ss_pred             eecCCCCCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEe
Q 004005            8 GVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELY   87 (779)
Q Consensus         8 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~   87 (779)
                      .++|..++..++..+.||++.+.         +. .....++ .+..+..||++.+.+     .-+|+.+.....+++++
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r---------~v-n~~~n~s-~~t~~~rl~~sknq~-----~~~~~d~~q~~e~~~~~   94 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNR---------LV-NLGKNFS-ILTRLVRLDLSKNQI-----KFLPKDAKQQRETVNAA   94 (326)
T ss_pred             cccchhhhhccceeeeehhhhhH---------HH-hhccchH-HHHHHHHHhccHhhH-----hhChhhHHHHHHHHHHH
Confidence            44555566777777777777776         22 1222333 455667777777766     56677777777777777


Q ss_pred             ccCCCCCCCcchhhcCCCCCCEEEcCCCccc
Q 004005           88 IASNDLRGSLPWCMANMTSLRILDVSSNQLT  118 (779)
Q Consensus        88 L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~  118 (779)
                      +.+|..+ ..|.+++..++++++++-++.+.
T Consensus        95 ~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   95 SHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hhccchh-hCCccccccCCcchhhhccCcch
Confidence            7776655 56777777777777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.30  E-value=0.27  Score=28.68  Aligned_cols=13  Identities=54%  Similarity=0.833  Sum_probs=6.0

Q ss_pred             CCCEEECCCCcCC
Q 004005          648 HVESLDLSNNKLN  660 (779)
Q Consensus       648 ~L~~L~L~~N~l~  660 (779)
                      +|++|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.30  E-value=0.27  Score=28.68  Aligned_cols=13  Identities=54%  Similarity=0.833  Sum_probs=6.0

Q ss_pred             CCCEEECCCCcCC
Q 004005          648 HVESLDLSNNKLN  660 (779)
Q Consensus       648 ~L~~L~L~~N~l~  660 (779)
                      +|++|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.24  E-value=0.35  Score=28.23  Aligned_cols=14  Identities=36%  Similarity=0.672  Sum_probs=7.3

Q ss_pred             CCCCEEECcccccc
Q 004005          623 TRIQTLNLSHNNLT  636 (779)
Q Consensus       623 ~~L~~L~Ls~n~l~  636 (779)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.24  E-value=0.35  Score=28.23  Aligned_cols=14  Identities=36%  Similarity=0.672  Sum_probs=7.3

Q ss_pred             CCCCEEECcccccc
Q 004005          623 TRIQTLNLSHNNLT  636 (779)
Q Consensus       623 ~~L~~L~Ls~n~l~  636 (779)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.51  E-value=0.077  Score=48.58  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=14.4

Q ss_pred             CCCCEEEcCCCc-ccCCCCcccccCCCCCCEEEccC
Q 004005          105 TSLRILDVSSNQ-LTGSISSSPLVHLTSIEELMLSN  139 (779)
Q Consensus       105 ~~L~~L~L~~n~-l~~~l~~~~l~~l~~L~~L~l~~  139 (779)
                      ++|+.|++++|. |+. -.-..+.++++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~-~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITD-GGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeech-hHHHHHHHhhhhHHHHhcC
Confidence            455555555442 221 1111344455555554444

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=87.46  E-value=2.9  Score=43.74  Aligned_cols=37  Identities=24%  Similarity=0.135  Sum_probs=20.1

Q ss_pred             CCCEEEcCCCcccCCCCcccccC---CCCCCEEEccCcccc
Q 004005          106 SLRILDVSSNQLTGSISSSPLVH---LTSIEELMLSNNYFQ  143 (779)
Q Consensus       106 ~L~~L~L~~n~l~~~l~~~~l~~---l~~L~~L~l~~n~~~  143 (779)
                      .+.+++++.|...+.+|. .+..   -.-+++++.+...++
T Consensus       215 ~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgir  254 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIR  254 (553)
T ss_pred             cccccccccCCCCccchh-HHHHhhhhhhhhcccccccccc
Confidence            566677777766656665 2221   223555666555444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.34  E-value=0.044  Score=50.12  Aligned_cols=37  Identities=22%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             CCCCcEEECCCC-CCCcccCccccCCCCCCEEEccCCc
Q 004005          280 LPSLYVFNNSMN-ALDGSIPSSFGNMKFLQILDLSNNH  316 (779)
Q Consensus       280 l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~Ls~n~  316 (779)
                      .++|+.|++++| +|+...-..+..+++|+.|.+.+-+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            456666666655 3444444445566666666665543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.03  E-value=0.13  Score=29.45  Aligned_cols=13  Identities=23%  Similarity=0.516  Sum_probs=4.8

Q ss_pred             CCCEEeccCCCCC
Q 004005           82 HLQELYIASNDLR   94 (779)
Q Consensus        82 ~L~~L~L~~~~l~   94 (779)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.10  E-value=0.31  Score=29.10  Aligned_cols=14  Identities=50%  Similarity=0.591  Sum_probs=7.1

Q ss_pred             CCcEEeCCCcccCC
Q 004005           54 SLKYLSLSYYTLGT   67 (779)
Q Consensus        54 ~L~~L~Ls~~~l~~   67 (779)
                      +|++|||++|.+++
T Consensus         3 ~L~~LdL~~N~i~~   16 (28)
T smart00368        3 SLRELDLSNNKLGD   16 (28)
T ss_pred             ccCEEECCCCCCCH
Confidence            45555555555533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	779
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-53
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-23
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-53
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 204/693 (29%), Positives = 313/693 (45%), Gaps = 96/693 (13%)
Query: 78  CSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
           CS   L  L ++ N L G +     + + + L+ L+VSSN L      S  + L S+E L
Sbjct: 98  CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 136 MLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS-N 192
            LS N       +  + +     LK      N+I  ++  S  +      L  L +SS N
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-----NLEFLDVSSNN 211
Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 252
           +  G     FL     L+++D+S  K++G+F +  +   T+L+ L + ++   GP  +P 
Sbjct: 212 FSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPP 265
Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG---------- 302
              K L+ L ++ N   G IP  +     +L   + S N   G++P  FG          
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 303 ---------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL- 346
                           M+ L++LDLS N  +GE+PE L     +L  L LS+NN  G + 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 347 --FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
               +N   T LQ L L+ N F G+IP +LS CS L  L+L+ N L G IP  LG+L++L
Sbjct: 386 PNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464
           + + +  N LEG IP E   + +L+ L +  N+++G +PS                    
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------- 487
Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXX 524
                  NC++L  + LS NRL G IP W+  L  L+ L L +N+  G +          
Sbjct: 488 -------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 525 XXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
                     +G IP            N    + Y    +   + E      G    LE 
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE----CHGAGNLLEF 596
Query: 577 Q---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLT 623
           Q   + ++   +T+N     + +Y G              LD+S N L G+IP +IG++ 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 683
            +  LNL HN+++GSIP    +L+ +  LDLS+NKL+G+IP  +  L  L    ++ NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 684 SGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
           SG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 717 SGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 146/498 (29%), Positives = 232/498 (46%), Gaps = 73/498 (14%)
Query: 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL--PIHSHKRLRQLDVSNNNIRGH 271
           LS+  +NG    +  + +  L +L L  +SL+GP      + S   L+ L+VS+N +   
Sbjct: 84  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 272 IPVKIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
             V  G  L SL V + S N++ G+      +    G +K L I   S N ++G++    
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 195
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNF----NLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 381
              CVNL+FL +S+NN     FS       + + LQ L + GN+  G+  +++S C+ L+
Sbjct: 196 VSRCVNLEFLDVSSNN-----FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ--LDSLQILDISDNNIS 439
            L +++N  +G IP     L  LQY+ +  N   G IP +F     D+L  LD+S N+  
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFY 307
Query: 440 GSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
           G++P  F     ++ + LS N   G+L   T      L  LDLS+N  +G +P+ +  LS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 499 -QLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNSSSP 557
             L  L L  NN  G                        PI P      L ++  N+   
Sbjct: 368 ASLLTLDLSSNNFSG------------------------PILP-----NLCQNPKNTLQ- 397
Query: 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY-QGKV------LSLLSGLDLSCNK 610
               E++    G  G +        E  + ++++ Y  G +      LS L  L L  N 
Sbjct: 398 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670
           L G IP ++  +  ++TL L  N+LTG IPS  SN  ++  + LSNN+L G+IP  +  L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 671 KTLEVFSVAYNNLSGEIP 688
           + L +  ++ N+ SG IP
Sbjct: 514 ENLAILKLSNNSFSGNIP 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 293 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 351
           ++GS+ S F     L  LDLS N L+G +    ++G C  L+FL +S+N L         
Sbjct: 89  INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 139
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 408
                         F G++   L K +SLE L L+ NS+ G  +  W+       L+++ 
Sbjct: 140 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 468
           +  N + G + V  C   +L+ LD+S NN S  +P      +++ + +S N L G   R 
Sbjct: 185 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 241
Query: 469 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 527
               C+ L  L++S N+  G IP     L  L +L L  N   GE+              
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 528 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 581
                  +G +PP F + +L ES +   N+ S +   +    + G +       + + E+
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 582 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 624
            E  T   A +         + G +L        + L  L L  N   G IPP + N + 
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419
Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           + +L+LS N L+G+IPS+  +L  +  L L  N L G+IP +L+ +KTLE   + +N+L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 685 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 717
           GEIP   +     N  S   N     +P  I R
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 204/695 (29%), Positives = 312/695 (44%), Gaps = 100/695 (14%)
Query: 78  CSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
           CS   L  L ++ N L G +     + + + L+ L+VSSN L      S  + L S+E L
Sbjct: 95  CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 136 MLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS-N 192
            LS N       +  + +     LK      N+I  ++  S  +      L  L +SS N
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-----NLEFLDVSSNN 208
Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 252
           +  G     FL     L+++D+S  K++G+F +  +   T+L+ L + ++   GP  +P 
Sbjct: 209 FSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPP 262
Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG---------- 302
              K L+ L ++ N   G IP  +     +L   + S N   G++P  FG          
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 303 ---------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
                           M+ L++LDLS N  +GE+PE L     +L  L LS+NN  G + 
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 348 SRNFNLT-----NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
               NL       LQ L L+ N F G+IP +LS CS L  L+L+ N L G IP  LG+L+
Sbjct: 383 P---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 462
           +L+ + +  N LEG IP E   + +L+ L +  N+++G +PS                  
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--------------- 484
Query: 463 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXX 522
                    NC++L  + LS NRL G IP W+  L  L+ L L +N+  G +        
Sbjct: 485 ---------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Query: 523 XXXXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574
                       +G IP            N    + Y    +   + E      G    L
Sbjct: 536 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE----CHGAGNLL 591
Query: 575 EKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGN 621
           E Q   + ++   +T+N     + +Y G              LD+S N L G+IP +IG+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681
           +  +  LNL HN+++GSIP    +L+ +  LDLS+NKL+G+IP  +  L  L    ++ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 682 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
           NLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 712 NLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  129 bits (324), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 146/498 (29%), Positives = 232/498 (46%), Gaps = 73/498 (14%)
Query: 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL--PIHSHKRLRQLDVSNNNIRGH 271
           LS+  +NG    +  + +  L +L L  +SL+GP      + S   L+ L+VS+N +   
Sbjct: 81  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 272 IPVKIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
             V  G  L SL V + S N++ G+      +    G +K L I   S N ++G++    
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNF----NLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 381
              CVNL+FL +S+NN     FS       + + LQ L + GN+  G+  +++S C+ L+
Sbjct: 193 VSRCVNLEFLDVSSNN-----FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ--LDSLQILDISDNNIS 439
            L +++N  +G IP     L  LQY+ +  N   G IP +F     D+L  LD+S N+  
Sbjct: 248 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFY 304
Query: 440 GSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
           G++P  F     ++ + LS N   G+L   T      L  LDLS+N  +G +P+ +  LS
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 499 -QLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNSSSP 557
             L  L L  NN  G                        PI P      L ++  N+   
Sbjct: 365 ASLLTLDLSSNNFSG------------------------PILP-----NLCQNPKNTLQ- 394
Query: 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY-QGKV------LSLLSGLDLSCNK 610
               E++    G  G +        E  + ++++ Y  G +      LS L  L L  N 
Sbjct: 395 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670
           L G IP ++  +  ++TL L  N+LTG IPS  SN  ++  + LSNN+L G+IP  +  L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 671 KTLEVFSVAYNNLSGEIP 688
           + L +  ++ N+ SG IP
Sbjct: 511 ENLAILKLSNNSFSGNIP 528

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 293 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 351
           ++GS+ S F     L  LDLS N L+G +    ++G C  L+FL +S+N L         
Sbjct: 86  INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 136
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 408
                         F G++   L K +SLE L L+ NS+ G  +  W+       L+++ 
Sbjct: 137 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 181
Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 468
           +  N + G + V  C   +L+ LD+S NN S  +P      +++ + +S N L G   R 
Sbjct: 182 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 238
Query: 469 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 527
               C+ L  L++S N+  G IP     L  L +L L  N   GE+              
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 528 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 581
                  +G +PP F + +L ES +   N+ S +   +    + G +       + + E+
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 582 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 624
            E  T   A +         + G +L        + L  L L  N   G IPP + N + 
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 416
Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           + +L+LS N L+G+IPS+  +L  +  L L  N L G+IP +L+ +KTLE   + +N+L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 685 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 717
           GEIP   +     N  S   N     +P  I R
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 59/231 (25%)
Query: 536 GPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 594
           GPIPP     T LH  Y   ++       F S        + +     +F+   ++    
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--------QIKTLVTLDFSYNALSGTLP 142
Query: 595 GKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGSIPSTFSNL----- 646
             + SL  L G+    N++ G IP   G+ +++ T + +S N LTG IP TF+NL     
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 647 -----------------------------------------KHVESLDLSNNKLNGKIPH 665
                                                    K++  LDL NN++ G +P 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 666 QLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
            L +LK L   +V++NNL GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 615 IPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 673
           IP  + NL  +  L +   NNL G IP   + L  +  L +++  ++G IP  L ++KTL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 674 EVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712
                +YN LSG +P   +        +++GN     +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
           N+++LAL  N L  H  S    LTNL +L L GN+          K ++L+ L L  N L
Sbjct: 64  NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL 449
                     LT L Y+ + +N L+      F +L +L  LD+ DNN   SLP   F  L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKL 180
Query: 450 S-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSH 502
           + +KQ+ L+ N L   +  G F   +SL  + L  N  + +  D      W+   SQ   
Sbjct: 181 TQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHPG 236
Query: 503 LILGHNNLEGE 513
           L+ G+ NL+ +
Sbjct: 237 LVFGYLNLDPD 247

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHL 456
           L  LT L Y+I+  N L+      F +L +L+ L + +N +       F  L+ +  ++L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 457 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 511
           + N L   L +G F   ++L  LDLSYN+L  S+P+ V D L+QL  L L  N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 79  SLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEEL 135
           SL++L+ELY+ SN L G+LP     ++T L +LD+ +NQLT   S+    LVHL   E  
Sbjct: 62  SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           M  N   ++P  +E L + + L +   + N++K+
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           NLTNL  L+L  N  + +I  +LS  +SL+ L  ++N +    P  L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
           N +   I V   +L +L+ L  ++N IS        PL I   +L +  L+G QLK  GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
             + ++L  LDL+ N+++   P  + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           NLTNL  L+L  N  + +I  +LS  +SL+ L  ++N +    P  L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
           N +   I V   +L +L+ L  ++N IS        PL I   +L +  L+G QLK  GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
             + ++L  LDL+ N+++   P  + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           NLTNL  L+L  N  + +I  +LS  +SL+ L  ++N +    P  L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
           N +   I V   +L +L+ L  ++N IS        PL I   +L +  L+G QLK  GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
             + ++L  LDL+ N+++   P  + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 291 NALDGSIPSSFGNMKFLQILDLSNN--------------------HLTG----EIPEHLA 326
           NAL G   ++F  +  L+ LDLS+N                    HL      E+   L 
Sbjct: 65  NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 386
            G   LQ+L L +NNLQ    +   +L NL  L L GNR       +     SL+ L L+
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 387 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDN 436
            N +    P    +L RL  + +  N+L   +P E    L SLQ L ++DN
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	779
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-159
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-120
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  480 bits (1237), Expect = e-159
 Identities = 194/719 (26%), Positives = 320/719 (44%), Gaps = 56/719 (7%)

Query: 31  IALNTSFIALNTSFLQIISE--SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYI 88
            +++ S   LN  F  + S   S+  L+ L LS   +    +G++  G      L  L +
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI----NGSVS-GFKCSASLTSLDL 107

Query: 89  ASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF--QI 144
           + N L G +     + + + L+ L+VSSN L      S  + L S+E L LS N      
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 145 PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLY 204
            +          LK      N+I  ++  S  +      L  L +SSN     I P FL 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-----NLEFLDVSSNNFSTGI-P-FLG 220

Query: 205 HQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVS 264
               L+++D+S  K++G+F   +    T+L+ L + ++   GP  +P    K L+ L ++
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLA 277

Query: 265 NNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH 324
            N   G IP  +     +L   + S N   G++P  FG+   L+ L LS+N+ +GE+P  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 325 LAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSKC--SSLE 381
             +    L+ L LS N   G L     NL+ +L  L L  N F G I  +L +   ++L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 441
            LYL NN   GKIP  L N + L  + +  N+L G IP     L  L+ L +  N + G 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 442 LPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500
           +P     + +++ + L  N L G++      NC++L  + LS NRL G IP W+  L  L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ 560
           + L L +N+  G +  +L +   L  LDL+ N  +G IP      +   + +N  +    
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA-ANFIAGKRY 575

Query: 561 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 620
             I       +         + EF       + +   LS  +  +++     GH  P   
Sbjct: 576 VYIKNDGMKKECHG---AGNLLEFQGIRSEQLNR---LSTRNPCNITSRVYGGHTSPTFD 629

Query: 621 NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
           N   +  L++S+N L+G IP    ++ ++  L+L +N ++G IP ++ +L+ L +  ++ 
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 681 NNLSGEIPEWKA-----------------------QFATFNESSYEGNTFLCGLPLPIC 716
           N L G IP+  +                       QF TF  + +  N  LCG PLP C
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  378 bits (974), Expect = e-120
 Identities = 163/643 (25%), Positives = 266/643 (41%), Gaps = 108/643 (16%)

Query: 78  CSLVHLQELYIASNDLR---GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 134
           C    +  + ++S  L     ++   + ++T L  L +S++ + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 135 LMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
           L LS N     +      L + S LK                            L++SSN
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLK---------------------------FLNVSSN 136

Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN--TKLETLFLVNDSLAGPFRL 250
             D           + LE +DLS   ++G      + ++   +L+ L +  + ++G   +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
            +     L  LDVS+NN    IP  +GD   +L   + S N L G    +      L++L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL-FSRNFNLTNLQWLQLEGNRFVGE 369
           ++S+N   G IP        +LQ+L+L+ N   G +    +     L  L L GN F G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQL-DS 427
           +P     CS LE L L++N+  G++P   L  +  L+ + +  N   G +P     L  S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 428 LQILDISDNNISGSLPSCF---HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           L  LD+S NN SG +          ++++++L  N   G++   T  NCS LV+L LS+N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFN 428

Query: 485 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
            L+G+IP  +  LS+L  L L  N LEGE+  +L  +  L+ L L  N+L G IP    N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
                                                                 + L+ +
Sbjct: 489 -----------------------------------------------------CTNLNWI 495

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664
            LS N+L G IP  IG L  +  L LS+N+ +G+IP+   + + +  LDL+ N  NG IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 665 HQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTF 707
             + +        +A N ++G+   +        E    GN  
Sbjct: 556 AAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  268 bits (688), Expect = 9e-80
 Identities = 125/681 (18%), Positives = 221/681 (32%), Gaps = 116/681 (17%)

Query: 51  SMPSLKYLSLSYYTLGTNS-SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
            +P LK L+L +     N  S   D+      +L EL++ SN ++           +L  
Sbjct: 71  KLPMLKVLNLQH-----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIK 168
           LD+S N L+ +   +  V L +++EL+LSNN  Q +      +F  S LK     +N+IK
Sbjct: 126 LDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 169 AEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL 228
                                          P   +    L  + L+++++       L 
Sbjct: 185 ----------------------------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 229 ENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD-VLPSLYVFN 287
                                    ++  +R L +SN+ +              +L + +
Sbjct: 217 LE----------------------LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
            S N L+     SF  +  L+   L  N++       L  G  N+++L L          
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKR-------- 305

Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
                  +     +           S      LE L + +N + G        L  L+Y+
Sbjct: 306 -------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

Query: 408 IMPNNHLEGPIPVE----FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH 462
            + N+                   L IL+++ N IS      F  L  ++ + L  N + 
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

Query: 463 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVSVQLCE 520
            +L    +    ++  + LSYN+      +    +  L  L+L    L+           
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 521 LNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
           L  L +LDLSNNN+        +       L   ++N +   +                 
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH---------------- 522

Query: 577 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636
                          IY  K LS L  L+L  N           +L  ++ ++L  NNL 
Sbjct: 523 ---------ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEVFSVAYNNLSGEIP--EWKAQ 693
               S F+N   ++SL+L  N +            + L    + +N          W   
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 694 FA--TFNESSYEGNTFLCGLP 712
           +   T        + +LC  P
Sbjct: 634 WINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  266 bits (682), Expect = 7e-79
 Identities = 118/690 (17%), Positives = 211/690 (30%), Gaps = 127/690 (18%)

Query: 18  FKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNS-SGTLDQG 76
             ++   ++   ++           +F          L  L + +     N+ S    + 
Sbjct: 24  PTNITVLNLTHNQL---RRLP--AANF-----TRYSQLTSLDVGF-----NTISKLEPEL 68

Query: 77  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
              L  L+ L +  N+L        A  T+L  L + SN +   I ++P V   ++  L 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD 127

Query: 137 LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
           LS+N       L        L+     NN+I+  +      I     L  L LSSN    
Sbjct: 128 LSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 197 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 256
           F  P   +    L  + L+++++       L                          ++ 
Sbjct: 186 FS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANT 222

Query: 257 RLRQLDVSNNNIRGHIPVKIGD-VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
            +R L +SN+ +              +L + + S N L+     SF  +  L+   L  N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
           ++       L  G  N+++L L  +                    +           S  
Sbjct: 283 NIQHLFSHSLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQ 326

Query: 376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE----FCQLDSLQIL 431
               LE L + +N + G        L  L+Y+ + N+                   L IL
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 432 DISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 490
           +++ N IS      F  L  ++ + L  N +  +L    +    ++  + LSYN+     
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 491 PDWVDGLSQLSHLILGHNNLEG--EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 548
            +    +  L  L+L    L+           L  L +LDLSNNN+        +     
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG---- 502

Query: 549 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 608
                                                            L  L  LDL  
Sbjct: 503 -------------------------------------------------LEKLEILDLQH 513

Query: 609 NKL--------IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
           N L         G     +  L+ +  LNL  N         F +L  ++ +DL  N LN
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690
                      +L+  ++  N ++    + 
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  253 bits (648), Expect = 5e-74
 Identities = 129/614 (21%), Positives = 205/614 (33%), Gaps = 92/614 (14%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
            S  + D S  +LT      P    T+I  L L++N  +   +      YS+L   +   
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
           N I     E          L  L+L  N        K      +L  + L    +     
Sbjct: 59  NTISKLEPEL---CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV-LPSL 283
           N        L TL L ++ L+          + L++L +SNN I+     ++      SL
Sbjct: 115 N-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN--LQFLALSNNN 341
                S N +    P  F  +  L  L L+N  L   + E L +   N  ++ L+LSN+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 342 LQG--HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
           L    +        TNL  L L  N        S +    LE  +L  N++       L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 400 NLTRLQYIIMPNN---------HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL- 449
            L  ++Y+ +  +          L       F  L  L+ L++ DN+I G   + F  L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 450 SIKQVHLSKNMLHGQ-LKRGTFFNC--SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILG 506
           ++K + LS +    + L   TF +   S L  L+L+ N+++    D    L  L  L LG
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 507 HNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFF 565
            N +  E++ Q    L  +  + LS N         F                       
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL--------------------- 452

Query: 566 SIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL--IGHIPPQIGNLT 623
                                           +  L  L L    L  +   P     L 
Sbjct: 453 --------------------------------VPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--------GKIPHQLVELKTLEV 675
            +  L+LS+NN+          L+ +E LDL +N L         G   + L  L  L +
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 676 FSVAYNNLSGEIPE 689
            ++  N       E
Sbjct: 541 LNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (568), Expect = 8e-63
 Identities = 122/691 (17%), Positives = 206/691 (29%), Gaps = 176/691 (25%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLD 74
           F   K+L   D+    +          +S        + +L+ L LS   +    S  L 
Sbjct: 117 FVKQKNLITLDLSHNGL----------SSTKLGTQVQLENLQELLLSNNKIQALKSEEL- 165

Query: 75  QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV--HLTSI 132
             + +   L++L ++SN ++   P C   +  L  L +++ QL  S++    +    TSI
Sbjct: 166 -DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 133 EELMLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 190
             L LSN+        +   L   +                            L  L LS
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTN----------------------------LTMLDLS 256

Query: 191 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL 250
            N  +             LEY  L +  +   F +                         
Sbjct: 257 YNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHS------------------------ 291

Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
            +H    +R L++  +  +  I                S+ +L      SF  +K L+ L
Sbjct: 292 -LHGLFNVRYLNLKRSFTKQSI----------------SLASLPKIDDFSFQWLKCLEHL 334

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS----RNFNLTNLQWLQLEGNRF 366
           ++ +N + G        G +NL++L+LSN+       +     +   + L  L L  N+ 
Sbjct: 335 NMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQL 425
                 + S    LE L L  N +  ++       L  +  I +  N         F  +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 426 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
            SLQ L +    +     S                         F    +L  LDLS N 
Sbjct: 454 PSLQRLMLRRVALKNVDSSP----------------------SPFQPLRNLTILDLSNNN 491

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLE--------GEVSVQLCELNQLQLLDLSNNNLHGP 537
           +     D ++GL +L  L L HNNL         G     L  L+ L +L+L +N     
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 538 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 597
               F +                                                     
Sbjct: 552 PVEVFKD----------------------------------------------------- 558

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS-NLKHVESLDLSN 656
           L  L  +DL  N L         N   +++LNL  N +T      F    +++  LD+  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 657 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 687
           N  +         +  +         LS   
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (565), Expect = 2e-62
 Identities = 105/504 (20%), Positives = 175/504 (34%), Gaps = 82/504 (16%)

Query: 209 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 268
            E  D SH+K+  + P+ L  N   +  L L ++ L          + +L  LDV  N I
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 269 RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 328
               P      LP L V N   N L      +F     L  L L +N +           
Sbjct: 62  SKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-K 119

Query: 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLYLN 386
             NL  L LS+N L          L NLQ L L  N+      + L     SSL+ L L+
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 387 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC---QLDSLQILDISDNNISGSLP 443
           +N +    P     + RL  + + N  L   +  + C      S++ L +S++ +S +  
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 444 SCFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500
           + F  L   ++  + LS N L+  +   +F     L    L YN +       + GL  +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 501 SHLILGHNNLEGEVSVQ---------LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 551
            +L L  +  +  +S+             L  L+ L++ +N++ G     F         
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------- 351

Query: 552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 611
                                                         L  L  L LS +  
Sbjct: 352 ----------------------------------------------LINLKYLSLSNSFT 365

Query: 612 -IGHIPPQIG---NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ- 666
            +  +  +       + +  LNL+ N ++      FS L H+E LDL  N++  ++  Q 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 667 LVELKTLEVFSVAYNNLSGEIPEW 690
              L+ +    ++YN         
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNS 449

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  246 bits (631), Expect = 3e-72
 Identities = 108/629 (17%), Positives = 199/629 (31%), Gaps = 89/629 (14%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
             + L ++ N LR    +   +   L++LD+S  ++      +    L+ +  L+L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 142 FQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 199
            Q     +   L +   L+   A    + +        I     L  L+++ N    F  
Sbjct: 88  IQSLALGAFSGLSS---LQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKL 141

Query: 200 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS---HK 256
           P++  +  +LE++DLS  K+   +   L     ++  L L  D    P            
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQIL 310
           RL +L + NN    ++       L  L V    +              S+   +  L I 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 311 DLSNNHL---TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 367
           +    +L     +I +       N+   +L +  ++             Q L+L   +F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG 317

Query: 368 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL--EGPIPVEFCQL 425
                 L     L        +          +L  L+++ +  N L  +G         
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 426 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
            SL+ LD+S N +     +      ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
              +     +GLS L  L +  N+ +         EL  L  LDLS   L    P  F++
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
                                                                LS L  L
Sbjct: 493 -----------------------------------------------------LSSLQVL 499

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL-KHVESLDLSNNKLNGKI 663
           ++S N            L  +Q L+ S N++  S      +    +  L+L+ N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 664 PHQ--LVELKTLEVFSVAYNNLSGEIPEW 690
            HQ  L  +K      V    +    P  
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (596), Expect = 2e-67
 Identities = 114/634 (17%), Positives = 205/634 (32%), Gaps = 112/634 (17%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           S P L+ L LS            D    SL HL  L +  N ++       + ++SL+ L
Sbjct: 50  SFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
                 L    +   + HL +++EL +++N  Q     E   N + L+  +  +N+I++ 
Sbjct: 106 VAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 171 ITES-HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
                  L        +L LS N  +      F   +  L  + L +   +       ++
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSH---KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 286
               LE   LV         L        + L  L +    +                  
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL------------------ 264

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN------ 340
              ++     I   F  +  +    L +  +               Q L L N       
Sbjct: 265 -AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP 320

Query: 341 -------------NLQGHLFSRNFNLTNLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYL 385
                        + +G       +L +L++L L  N   F G   QS    +SL+ L L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPS 444
           + N ++  +      L +L+++   +++L+       F  L +L  LDIS  +   +   
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 445 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL 503
            F+ L S++ + ++ N          F    +L  LDLS  +L    P   + LS L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 504 ILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEI 563
            + HNN     +     LN LQ+LD S N++         +                   
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH------------------- 540

Query: 564 FFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ--IGN 621
                                              S L+ L+L+ N        Q  +  
Sbjct: 541 ---------------------------------FPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 655
           +   + L +    +  + PS    +  V SL+++
Sbjct: 568 IKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (577), Expect = 9e-65
 Identities = 100/570 (17%), Positives = 183/570 (32%), Gaps = 60/570 (10%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISES---MPSLKYLSLSYYTLGTNS-S 70
           F  F  L+  D+                    I   +   +  L  L L+      N   
Sbjct: 48  FFSFPELQVLDLS-------------RCEIQTIEDGAYQSLSHLSTLILTG-----NPIQ 89

Query: 71  GTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130
                    L  LQ+L     +L     + + ++ +L+ L+V+ N +          +LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 131 SIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 188
           ++E L LS+N  Q      L  L     + + N   +     +         + +L+ L+
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQ---MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 189 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-----EFPNWLLENNTKLETLFL---V 240
           L +N+    +    +     LE   L   +        +F    LE    L         
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 241 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD------ 294
            D          +    +    + +  I              L + N             
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 295 ----------GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-VGCVNLQFLALSNNNLQ 343
                     G    S  ++  L+ LDLS N L+ +     +  G  +L++L LS N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQS-LSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
             + S    L  L+ L  + +        S      +L  L +++             L+
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 403 RLQYIIMPNNHLEGPI-PVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNM 460
            L+ + M  N  +    P  F +L +L  LD+S   +    P+ F+ L S++ +++S N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL-SQLSHLILGHNNLEGEVSVQ-- 517
               L    +   +SL  LD S N +  S    +    S L+ L L  N+       Q  
Sbjct: 506 FFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

Query: 518 LCELNQLQLLDLSNNNLHGPIPPCFDNTTL 547
           L  +   + L +    +    P       +
Sbjct: 565 LQWIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (566), Expect = 3e-63
 Identities = 114/610 (18%), Positives = 211/610 (34%), Gaps = 73/610 (11%)

Query: 100 CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 159
           C+  + ++    +  N         P     S + L LS N  +   S    F++  L++
Sbjct: 3   CVEVVPNITYQCMELN-----FYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQV 56

Query: 160 FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 219
            +    EI+     +         L+TL L+ N                L+ +      +
Sbjct: 57  LDLSRCEIQTIEDGA---YQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNL 112

Query: 220 NGEFPNWLLENNTKLETLFL-VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 278
                   + +   L+ L +  N   +        +   L  LD+S+N I+      +  
Sbjct: 113 ASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 279 VLPSLYVFNN----SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 334
            L  + + N     S+N ++   P +F  ++ L  L L NN  +  + +    G   L+ 
Sbjct: 172 -LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 335 LALSNNNLQGH---LFSRNFNLTNLQWLQLEGNR------FVGEIPQSLSKCSSLEGLYL 385
             L     +            L  L  L +E  R      ++ +I    +  +++    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC 445
            + ++              Q++ + N            +L SL+ L  + N    +    
Sbjct: 290 VSVTIERVKD--FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 446 FHPLSIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 504
             P S++ + LS+N L  +     + F  +SL  LDLS+N +     ++  GL QL HL 
Sbjct: 345 DLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLD 402

Query: 505 LGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSSPDE 559
             H+NL+          L  L  LD+S+ +        F+       L  + ++      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS------ 456

Query: 560 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 619
                        F E    +IF               L  L+ LDLS  +L    P   
Sbjct: 457 -------------FQENFLPDIF-------------TELRNLTFLDLSQCQLEQLSPTAF 490

Query: 620 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSV 678
            +L+ +Q LN+SHNN        +  L  ++ LD S N +      +L     +L   ++
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 679 AYNNLSGEIP 688
             N+ +    
Sbjct: 551 TQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (515), Expect = 4e-56
 Identities = 80/469 (17%), Positives = 152/469 (32%), Gaps = 58/469 (12%)

Query: 240 VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 299
                   +++P +     + LD+S N +R                              
Sbjct: 12  YQCMELNFYKIPDNLPFSTKNLDLSFNPLR-------------------------HLGSY 46

Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQW 358
           SF +   LQ+LDLS   +             +L  L L+ N +Q  L    F  L++LQ 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQS-LALGAFSGLSSLQK 104

Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG-KIPRWLGNLTRLQYIIMPNNHLEGP 417
           L              +    +L+ L + +N +   K+P +  NLT L+++ + +N ++  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 418 IPVEFCQLDSLQI----LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 473
              +   L  + +    LD+S N ++   P  F  + + ++ L  N     + +      
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 474 SSLVTLDLSYNRLNGS------IPDWVDGLSQLSHLILGHNNLE---GEVSVQLCELNQL 524
           + L    L                  ++GL  L+        L+    ++      L  +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 525 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 584
               L +  +       ++    H    N            S++    F   +    F  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK-RLTFTSNKGGNAFSE 343

Query: 585 TTKNIAYIYQGKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPST 642
                        L  L  LDLS N L   G         T ++ L+LS N +   + S 
Sbjct: 344 VD-----------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 643 FSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPEW 690
           F  L+ +E LD  ++ L         + L+ L    +++ +        
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (486), Expect = 3e-52
 Identities = 96/499 (19%), Positives = 192/499 (38%), Gaps = 34/499 (6%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLD 74
             H K+L+  ++    I        L   F      ++ +L++L LS   + +     L 
Sbjct: 120 IGHLKTLKELNVAHNLI----QSFKLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDL- 169

Query: 75  QGLCSL-VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
           + L  + +    L ++ N +    P     +  L  L + +N  + ++  + +  L  +E
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 134 ELMLSNNYFQIPISLEP-----LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 188
              L    F+   +LE      L     L I       +   + +   L      +++ S
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 189 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 248
           L S   +      + +     ++++L + K    FP   L++  +L        +     
Sbjct: 289 LVSVTIERVKDFSYNF---GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 249 RLPIHSHKRLRQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
            LP      L  LD+S N +  +G           SL   + S N +  ++ S+F  ++ 
Sbjct: 345 DLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGV-ITMSSNFLGLEQ 397

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           L+ LD  +++L       + +   NL +L +S+ + +         L++L+ L++ GN F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 367 VGEI-PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 425
                P   ++  +L  L L+   L    P    +L+ LQ + M +N+        +  L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 426 DSLQILDISDNNISGSLPSCFHPL--SIKQVHLSKNMLHGQLKRGTFFN-CSSLVTLDLS 482
           +SLQ+LD S N+I  S          S+  ++L++N      +  +F         L + 
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

Query: 483 YNRLNGSIPDWVDGLSQLS 501
             R+  + P    G+  LS
Sbjct: 578 VERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 10/85 (11%), Positives = 18/85 (21%), Gaps = 21/85 (24%)

Query: 627 TLNLSHNNLT---------------------GSIPSTFSNLKHVESLDLSNNKLNGKIPH 665
           T      N                            +F +   ++ LDLS  ++      
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 666 QLVELKTLEVFSVAYNNLSGEIPEW 690
               L  L    +  N +       
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA 95

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  247 bits (632), Expect = 4e-72
 Identities = 95/639 (14%), Positives = 181/639 (28%), Gaps = 126/639 (19%)

Query: 79  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP---LVHLTSIEEL 135
           S   +  L +      G +P  +  +T L +L + S+    +        +    S E+ 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 136 MLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYG 194
                ++Q   +  +P  ++S L      ++  +  I +S  +     +   +   SN  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT---LKDTQIGQLSNNI 195

Query: 195 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 254
                 K +     L    + +     E      EN                   L   +
Sbjct: 196 TFV--SKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDN 247

Query: 255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL--------DGSIPSSFGNMKF 306
            K L  ++V N      +P  +   LP + + N + N          D    +     + 
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 307 LQILDLSNNHLT-GEIPEHLAVGCVNLQFLALSNNNLQGHL--FSRNFNLTNLQWLQLEG 363
           +QI+ +  N+L    +   L      L  L    N L+G L  F    +   L  L L  
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFG---SEIKLASLNLAY 362

Query: 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL--GNLTRLQYIIMPNNHLEG----- 416
           N+              +E L   +N L   IP      +++ +  I    N +       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 417 --PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 474
             P+     +  ++  +++S+N IS      F                           S
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFS------------------------TGS 457

Query: 475 SLVTLDLSYNRLNG-------SIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQL 526
            L +++L  N L            +       L+ + L  N L       +   L  L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 527 LDLSNNNLHGPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFT 585
           +DLS N+     P    N +TL                                      
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTL-------------------------------------- 538

Query: 586 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN 645
                     K   + +  D   N+ +   P  I     +  L +  N++         N
Sbjct: 539 ----------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN 588

Query: 646 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           +     LD+ +N         +       ++ + Y+   
Sbjct: 589 I---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  227 bits (580), Expect = 6e-65
 Identities = 72/543 (13%), Positives = 172/543 (31%), Gaps = 77/543 (14%)

Query: 183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETLFL 239
           ++  LSL      G   P  +    +LE + L           +    +  N   E    
Sbjct: 82  RVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 240 VNDSLAGPF--RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 297
           +       F    P      L +  ++++  +  I      +           N +   +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 298 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 357
             +   +  L+   + N+    E        C   +               +  NL +L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 358 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL--------GKIPRWLGNLTRLQYIIM 409
            +++     + ++P  L     ++ + +  N  +         +         ++Q I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 410 PNNHL-EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 468
             N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 469 TFFNCSSLVTLDLSYNRLNGSIPDWVD--GLSQLSHLILGHNNLEG-------EVSVQLC 519
                  +  L  ++N+L   IP+  D   +S +S +   +N +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 520 ELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFL 574
           +   +  ++LSNN +       F      ++++   +  +  P    +       +    
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN---- 486

Query: 575 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSH 632
                                    LL+ +DL  NKL   +        L  +  ++LS+
Sbjct: 487 -----------------------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

Query: 633 NNLTGSIPSTFSNLKHVESLDLSN------NKLNGKIPHQLVELKTLEVFSVAYNNLSGE 686
           N+ +   P+   N   ++   + N      N+   + P  +    +L    +  N++   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK- 580

Query: 687 IPE 689
           + E
Sbjct: 581 VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (543), Expect = 9e-60
 Identities = 78/531 (14%), Positives = 182/531 (34%), Gaps = 57/531 (10%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMA--NMTSLR 108
            +  L+ L+L  +    N      +G+ + +  ++        + +        + + L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 109 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
              ++S+    SI  S  + L   +   LSNN   +  ++      ++L+ F   N+   
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPF- 218

Query: 169 AEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL 228
                    I   ++      +  Y           +  DL  V++ +     + P +L 
Sbjct: 219 -----VAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 229 ENNTKLETLFLVNDSLAGPFRLP--------IHSHKRLRQLDVSNNNIR-GHIPVKIGDV 279
           +   +++ + +  +      +L             ++++ + +  NN++   +   +   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK- 328

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
           +  L +     N L+G +P+ FG+   L  L+L+ N +T  IP +       ++ L+ ++
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 340 NNLQGHLFSRNF-NLTNLQWLQLEGNRFVG-------EIPQSLSKCSSLEGLYLNNNSLL 391
           N L+      +  +++ +  +    N            +  +  K  ++  + L+NN + 
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 392 GKIPRWLGNLTRLQYIIMPNNHLEG-------PIPVEFCQLDSLQILDISDNNISGSLPS 444
                     + L  I +  N L              F     L  +D+  N ++  L  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505

Query: 445 CFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTL------DLSYNRLNGSIPDWVD 495
            F       +  + LS N            N S+L         D   NR     P+ + 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 496 GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
               L+ L +G N++   V+ ++     + +LD+ +N              
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  210 bits (537), Expect = 7e-59
 Identities = 60/470 (12%), Positives = 142/470 (30%), Gaps = 72/470 (15%)

Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFL 307
           ++S+ R+  L +      G +P  IG  L  L V     +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 308 QILDLSNNHLTGEIPEHLA-VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           +       H      ++       +L    ++++  Q  +   +        +    N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
              + +++ + + L   Y+ N+  + +           +Y             +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR-------GTFFNCSSLVT 478
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 479 LDLSYNRL-NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 537
           + + YN L    +   +  + +L  L   +N LEG++        +L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 538 IPPCFDNTT----LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 593
                  T     L  +++        F+                               
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKS---------------------------- 400

Query: 594 QGKVLSLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 646
               +S++S +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 401 ----VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 647 KHVESLDLSNNKLNG-------KIPHQLVELKTLEVFSVAYNNLSGEIPE 689
             + S++L  N L                    L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  190 bits (485), Expect = 6e-52
 Identities = 53/430 (12%), Positives = 128/430 (29%), Gaps = 79/430 (18%)

Query: 277 GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA 336
           G    + + FN  ++        S  +   +  L L     +G +P+ +      L+ LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLA 111

Query: 337 LSNNNLQGHLFSRNF----NLTNLQWLQLEGNRFVGEIPQSLSK--CSSLEGLYLNNNSL 390
           L ++  + +             + +  Q     +         +   S L    +N++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
              I +      +   I   +N++   +     +L  L+   + ++             +
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI----CEA 226

Query: 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
            +  +      +       + N   L  +++        +P ++  L ++  + +  N  
Sbjct: 227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 511 EGEVSV--------QLCELNQLQLLDLSNNNL-HGPIPPCFDNTTLHESYSNSSSPDEQF 561
                +              ++Q++ +  NNL   P+                       
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK----------------- 328

Query: 562 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN 621
                                               +  L  L+   N+L G   P  G+
Sbjct: 329 ------------------------------------MKKLGMLECLYNQLEG-KLPAFGS 351

Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP--HQLVELKTLEVFSVA 679
             ++ +LNL++N +T    +     + VE+L  ++NKL   IP       +  +     +
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFS 410

Query: 680 YNNLSGEIPE 689
           YN +     +
Sbjct: 411 YNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (452), Expect = 2e-47
 Identities = 73/521 (14%), Positives = 153/521 (29%), Gaps = 121/521 (23%)

Query: 33  LNTSFIALNTSFLQIISES---MPSLKYLSLSY---------------YTLGTNSSGTLD 74
           L  + I   ++ +  +S++   +  L+   +                  +       T D
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242

Query: 75  QGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-------SPLV 127
               +L  L ++ + +      LP  +  +  +++++V+ N+              +   
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 128 HLTSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
               I+ + +  N  +  P+    L    +L +     N+++ ++    S I    +L +
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLAS 357

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
           L+L+ N                     ++ I      P        ++E L   ++ L  
Sbjct: 358 LNLAYNQ--------------------ITEI------PANFCGFTEQVENLSFAHNKLKY 391

Query: 247 -PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 305
            P      S   +  +D S N I                            +  +     
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF------------------DPLDPTPFKGI 433

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG------HLFSRNF-NLTNLQW 358
            +  ++LSNN ++    E  +     L  + L  N L           + NF N   L  
Sbjct: 434 NVSSINLSNNQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 359 LQLEGNRFVGEIPQSL--SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN----- 411
           + L  N+    +      +    L G+ L+ NS   K P    N + L+   + N     
Sbjct: 493 IDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 412 -NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
            N      P       SL  L I  N+I   +                            
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI------------------------ 585

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
               ++  LD+  N        +V    +    +L ++  +
Sbjct: 586 --TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 4e-20
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 13/227 (5%)

Query: 468 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 527
           G      +    +   +         ++   +++ L L      G V   + +L +L++L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 528 DLSNNNLHGP----IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 583
            L ++          P         E            + F   +  + F +     I  
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM--HYQKTFVDYDPREDFSDLIKDCINS 168

Query: 584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 643
              +          L     +    N +   +   +  LT+++   + ++          
Sbjct: 169 DPQQKSIKKSSRITLKDTQ-IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 644 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690
                    +    +       +   LK L    V       ++P +
Sbjct: 227 WEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  215 bits (551), Expect = 4e-64
 Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IPEHLAVGCVNLQFLALSN-NNLQGH 345
                 G +  +      +  LDLS  +L     IP  LA     L FL +   NNL G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP 92

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 405
           +      LT L +L +      G IP  LS+  +L  L  + N+L G +P  + +L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 406 YIIMPNNHLEGPIPVEFCQLDSL-QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464
            I    N + G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 524
                F +  +   + L+ N L   +   V     L+ L L +N + G +   L +L  L
Sbjct: 213 ASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 525 QLLDLSNNNLHGPIPP 540
             L++S NNL G IP 
Sbjct: 271 HSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (542), Expect = 8e-63
 Identities = 81/297 (27%), Positives = 124/297 (41%), Gaps = 35/297 (11%)

Query: 251 PIHSHKRLRQLDVSNNNIRG--HIPVKIGDVLPSLYVFN-NSMNALDGSIPSSFGNMKFL 307
                 R+  LD+S  N+     IP  + + LP L       +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 367
             L +++ +++G IP+ L+     L  L  S N L G L     +L NL  +  +GNR  
Sbjct: 104 HYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 368 GEIPQSLSKCSSL-EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
           G IP S    S L   + ++ N L GKIP    NL  L ++ +  N LEG   V F    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
           + Q + ++ N+++  L                                +L  LDL  NR+
Sbjct: 222 NTQKIHLAKNSLAFDLGK-------------------------VGLSKNLNGLDLRNNRI 256

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH--GPIPPC 541
            G++P  +  L  L  L +  NNL GE+  Q   L +  +   +NN      P+P C
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  208 bits (532), Expect = 2e-61
 Identities = 73/378 (19%), Positives = 122/378 (32%), Gaps = 108/378 (28%)

Query: 369 EIPQSLSKCSSL----EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG--PIPVEF 422
           +I + L   ++L          N + LG +        R+  + +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 423 CQLDSLQILDISD-NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 541
           ++  ++G+IPD++  +  L  L   +N L G +   +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 542 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 601
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 602 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661
           + + +S N+L G IPP   NL  +  ++LS N L G     F + K+ + + L+ N L  
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 662 KIPHQLVELKTLEVFSVAYNNLSGEIPEW-----------------------KAQFATFN 698
            +  ++   K L    +  N + G +P+                              F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 699 ESSYEGNTFLCGLPLPIC 716
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (509), Expect = 3e-58
 Identities = 85/354 (24%), Positives = 128/354 (36%), Gaps = 67/354 (18%)

Query: 296 SIPSSFGNMKFLQ----ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG--HLFSR 349
            I    GN   L       D  N    G + +        +  L LS  NL     + S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 350 NFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 408
             NL  L +L + G N  VG IP +++K + L  LY+ + ++ G IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS--IKQVHLSKNMLHGQLK 466
              N L G +P     L +L  +    N ISG++P  +   S     + +S+N L G++ 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 467 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQL 526
             TF N  +L  +DLS N L G              + L  N+L  ++  ++     L  
Sbjct: 192 P-TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 527 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 586
           LDL NN ++G +P                                               
Sbjct: 249 LDLRNNRIYGTLPQGLTQ------------------------------------------ 266

Query: 587 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 640
                      L  L  L++S N L G I PQ GNL R      ++N      P
Sbjct: 267 -----------LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (403), Expect = 2e-43
 Identities = 76/362 (20%), Positives = 122/362 (33%), Gaps = 92/362 (25%)

Query: 91  NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELMLSN-NYF--QIPI 146
               G L         +  LD+S   L         + +L  +  L +   N     IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 147 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQ 206
           ++      ++L                         QL+ L ++                
Sbjct: 96  AI------AKLT------------------------QLHYLYITHT-------------- 111

Query: 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 266
                       ++G  P++ L     L TL                          S N
Sbjct: 112 -----------NVSGAIPDF-LSQIKTLVTLDF------------------------SYN 135

Query: 267 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL-QILDLSNNHLTGEIPEHL 325
            + G +P  I   LP+L       N + G+IP S+G+   L   + +S N LTG+IP   
Sbjct: 136 ALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-- 192

Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 385
               +NL F+ LS N L+G       +  N Q + L  N    ++   +    +L GL L
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251

Query: 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI--SGSLP 443
            NN + G +P+ L  L  L  + +  N+L G IP     L    +   ++N       LP
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLP 310

Query: 444 SC 445
           +C
Sbjct: 311 AC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 4e-33
 Identities = 63/294 (21%), Positives = 112/294 (38%), Gaps = 42/294 (14%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIAS-NDLRGSLPWCMANMTSLRI 109
               +  L LS   L       +   L +L +L  LYI   N+L G +P  +A +T L  
Sbjct: 48  QTYRVNNLDLSGLNL--PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEI 167
           L ++   ++G+I    L  + ++  L  S N     +P S+  L N              
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPN-------------- 150

Query: 168 KAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL 227
                           L  ++   N   G I   +         + +S  ++ G+ P   
Sbjct: 151 ----------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
              N  L  + L  + L G   +   S K  +++ ++ N++   +  K+G    +L   +
Sbjct: 195 --ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLD 250

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
              N + G++P     +KFL  L++S N+L GEIP+            A +NN 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  227 bits (581), Expect = 1e-63
 Identities = 78/541 (14%), Positives = 178/541 (32%), Gaps = 73/541 (13%)

Query: 183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 242
           ++  LSL+     G + P  +    +L+ +             +  E  T   +    + 
Sbjct: 324 RVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 243 SLAGPFRLPIHSHKRLRQLDVSNNNIRGH---IPVKIGDVLPSLYVFNNSMNALDGSIPS 299
                 ++ +   +RL   D+  + I  +    P+K    +        ++      I  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359
           +   +  LQI+  +N+  T +         V+ +           +      NL +L  +
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL---------LGKIPRWLGNLTRLQYIIMP 410
           +L     + ++P  L     L+ L +  N             ++        ++Q   M 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 411 NNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 469
            N+LE  P      ++  L +LD   N +   L +    + +  + L  N +  ++    
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDF 614

Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVD--GLSQLSHLILGHNNLEGEVSVQLCELNQLQL- 526
                 +  L  S+N+L   IP+  +   +  +  +   +N +  E     C ++  +  
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 527 ----LDLSNNNLHGPIPPCFDN-TTLHE-SYSN---SSSPDEQFEIFFSIEGHQGFLEKQ 577
               + LS N +       F   + +     SN   +S P+   +       +       
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN------- 726

Query: 578 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNL 635
                                 LL+ +DL  NKL   +        L  +  +++S+N  
Sbjct: 727 --------------------TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF 765

Query: 636 TGSIPSTFSNLKHVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
           + S P+   N   +++  +        N++  + P  +    +L    +  N++  ++ E
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 690 W 690
            
Sbjct: 824 K 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  227 bits (581), Expect = 2e-63
 Identities = 92/665 (13%), Positives = 184/665 (27%), Gaps = 140/665 (21%)

Query: 77  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
           L +   +  L +A    +G +P  +  +T L++L   ++  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 137 LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA--EITESHSLIAPKFQLNTLSLSSNYG 194
              +  ++      L    RL + +   + I    E+           +   +   +N  
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 195 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 254
                 K +     L+ +  ++                  E              L   +
Sbjct: 438 TF--ISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
            K L  +++ N                               +P    ++  LQ L+++ 
Sbjct: 490 LKDLTDVELYNCP-------------------------NMTQLPDFLYDLPELQSLNIAC 524

Query: 315 NHLTGEIPEHLAV--------GCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 365
           N                        +Q   +  NNL+    S +   +  L  L    N+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR-LQYIIMPNNHLEG-PIPVEFC 423
                 ++      L  L L+ N  + +IP      T  ++ +   +N L+  P      
Sbjct: 585 V--RHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
            +  +  +D S N I     +    +                     +   +  T+ LSY
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDD-------------------YKGINASTVTLSY 682

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLE-------GEVSVQLCELNQLQLLDLSNNNLHG 536
           N +     +     S +S +IL +N +                    L  +DL  N L  
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 537 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK 596
            +   F  TTL                                                 
Sbjct: 743 -LSDDFRATTLPY----------------------------------------------- 754

Query: 597 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGSIPSTFSNLKHVE 650
               LS +D+S N      P Q  N ++++   + H      N +    P+  +    + 
Sbjct: 755 ----LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 651 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL-SGEIPE-WKAQFATFNESSYEGNTFL 708
            L + +N +  K+  +L     L +  +A N   S ++        A      Y+    +
Sbjct: 810 QLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

Query: 709 CGLPL 713
            G   
Sbjct: 867 RGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (489), Expect = 2e-51
 Identities = 87/534 (16%), Positives = 169/534 (31%), Gaps = 87/534 (16%)

Query: 210 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVN-------DSLAGPFRLPIHSHKRLRQLD 262
           +Y  L  I    +  NW   + T   T+  +N       D       + + ++ R+  L 
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS 329

Query: 263 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 322
           ++    +G +P  IG  L  L V +   ++   S            + +   + +     
Sbjct: 330 LAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 323 EHLAVGCVNLQFLALSNNNLQGHL---FSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCS 378
           +        L    L  + +  +      +  +  +L+  Q+      +  I +++ + +
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 379 SLEGLYLNNNSL-------------------LGKIPRWLGNLTRLQYIIMPNNHLEGPIP 419
            L+ +Y  N+                              NL  L  + + N      +P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 420 VEFCQLDSLQILDISDNNISG---------SLPSCFHPL-SIKQVHLSKNMLHGQLKRGT 469
                L  LQ L+I+ N              L         I+  ++  N L       +
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLD 528
                 L  LD  +N++   +  +     +L+ L L +N +E E+    C   +Q++ L 
Sbjct: 569 LQKMVKLGLLDCVHNKVR-HLEAFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625

Query: 529 LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK----QNHEIFEF 584
            S+N L   IP  F+  +++                         +       N      
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYV------------------------MGSVDFSYNK--IGS 658

Query: 585 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT-------G 637
             +NI+           S + LS N++           + I T+ LS+N +T        
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 638 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLV--ELKTLEVFSVAYNNLSGEIPE 689
                + N   + ++DL  NKL   +        L  L    V+YN  S   P 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  181 bits (462), Expect = 6e-48
 Identities = 83/565 (14%), Positives = 165/565 (29%), Gaps = 93/565 (16%)

Query: 47  IISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC------ 100
           +  ++   +  LSL+    G  + G +   +  L  L+ L   ++    S          
Sbjct: 317 VDLDNNGRVTGLSLA----GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 101 -------------------MANMTSLRILDVSSNQLT-----GSISSSPLVHLTSIEELM 136
                              +     L + D+  + +        I     + L   +   
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 137 LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN----------- 185
           L+N    I  +++ L   ++L+I    N+    +        A                 
Sbjct: 433 LTNRITFISKAIQRL---TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 186 -----TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL--------LENNT 232
                 + L +      + P FLY   +L+ ++++  +                  +   
Sbjct: 490 LKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 233 KLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
           K++  ++  ++L   P    +    +L  LD  +N +R H+    G     L       N
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGT-NVKLTDLKLDYN 605

Query: 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGH----- 345
            ++            ++ L  S+N L   IP          +  +  S N +        
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRWL 398
               ++   N   + L  N       +  +  S +  + L+NN +       L       
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 399 GNLTRLQYIIMPNNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS------- 450
            N   L  I +  N L           L  L  +D+S N  S S P+     S       
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGI 783

Query: 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
             Q     N +  Q        C SL+ L +  N +   + + +    QL  L +  N  
Sbjct: 784 RHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

Query: 511 EGEVSVQLCELNQLQLLDLSNNNLH 535
                  +C   +  +  L  +   
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (433), Expect = 3e-44
 Identities = 58/435 (13%), Positives = 122/435 (28%), Gaps = 83/435 (19%)

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG- 344
           FN  ++           N   +  L L+     G +P+ +      L+ L+   ++    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVS 362

Query: 345 ------HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL 398
                    + + +      +++   +   +  Q L+  S L    +N N  +  I +  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN-LSDLLQDAINRNPEMKPIKKDS 421

Query: 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458
               +   I    N +   I     +L  LQI+  +++  +         +  +  +   
Sbjct: 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI----AVDWEDANSDY 476

Query: 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV-- 516
              +      ++ N   L  ++L        +PD++  L +L  L +  N       +  
Sbjct: 477 AKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 517 -------QLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIE 568
                        ++Q+  +  NNL   P                               
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK------------------------ 571

Query: 569 GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 628
                                        +  L  LD   NK+        G   ++  L
Sbjct: 572 -----------------------------MVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600

Query: 629 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH--QLVELKTLEVFSVAYNNLSGE 686
            L +N +        +    VE L  S+NKL   IP+      +  +     +YN +  E
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 687 IPEWKAQFATFNESS 701
                     +   +
Sbjct: 660 GRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (431), Expect = 5e-44
 Identities = 76/513 (14%), Positives = 138/513 (26%), Gaps = 96/513 (18%)

Query: 40  LNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG---- 95
                 ++      S   L  +     TN    + + +  L  LQ +Y A++        
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 96  ---------------SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
                          +     +N+  L  +++ +      +    L  L  ++ L ++ N
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN 525

Query: 141 YFQIPISL--------EPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
                  L        +      +++IF    N ++ E   S SL     +L  L    N
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-KLGLLDCVHN 583

Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG-PFRLP 251
                   +       L  + L + ++  E P        ++E L   ++ L   P    
Sbjct: 584 K---VRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLP-----SLYVFNNSMNALDGSIPSSFGNMKF 306
             S   +  +D S N I       I   +      +      S N +       F     
Sbjct: 640 AKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 307 LQILDLSNNHLTGEIPEHLAV-------GCVNLQFLALSNNNLQGHLFSRNF-NLTNLQW 358
           +  + LSNN +T  IPE+              L  + L  N L           L  L  
Sbjct: 699 ISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 418
           + +  N F    P      S L+   + +                        N +    
Sbjct: 758 MDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAE------------------GNRILRQW 798

Query: 419 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478
           P       SL  L I  N+I   +                                 L  
Sbjct: 799 PTGITTCPSLIQLQIGSNDIR-KVDEKL--------------------------TPQLYI 831

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
           LD++ N         V    +    +L ++  +
Sbjct: 832 LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (342), Expect = 5e-33
 Identities = 62/517 (11%), Positives = 131/517 (25%), Gaps = 97/517 (18%)

Query: 201 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ 260
            F     +L+ + +++ + + E  N    N+  ++      DS      LP  +++ +  
Sbjct: 165 SFNRVTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSA---VWLPAGTYQ-VVA 220

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNN-----------SMNALDGSIPSSFGNMKFLQI 309
               + +      ++   V    +   +            +      I          + 
Sbjct: 221 YTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEA 280

Query: 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 369
           LD  N         +      N  F     +           N   +  L L G    G 
Sbjct: 281 LDGKNWRYYSGTINNTIHSL-NWNFNK-ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQLDSL 428
           +P ++ + + L+ L    +S       +              + +       F      L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 429 QILDISDNNISGSL------PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
            + D+  + I+ +             L   Q+    N +    K       + L  +  +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--AIQRLTKLQIIYFA 456

Query: 483 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 542
            +                      +        +    L  L  ++L N      +P   
Sbjct: 457 NSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 543 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 602
            +                                                     L  L 
Sbjct: 512 YD-----------------------------------------------------LPELQ 518

Query: 603 GLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESL 652
            L+++CN+ I           +        +IQ   + +NNL     S +   +  +  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 653 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
           D  +NK+  +          L    + YN +  EIPE
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 13/86 (15%), Positives = 27/86 (31%)

Query: 627 TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 686
             N   +           N   V  L L+     G++P  + +L  L+V S   ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 687 IPEWKAQFATFNESSYEGNTFLCGLP 712
              +  +  T + S    +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (568), Expect = 2e-63
 Identities = 109/591 (18%), Positives = 200/591 (33%), Gaps = 57/591 (9%)

Query: 108 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 167
           +  +  +  L       P     S E L  S N     I          L   +    +I
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 168 KAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL 227
                ++      + +L+TL L++N          L     L+++      ++       
Sbjct: 70  YWIHEDT---FQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFI-P 124

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL--YV 285
           L N   LE+L+L ++ ++          ++L+ LD  NN I  ++  +    L       
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLS 183

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-VGCVNLQFLALSNNNLQG 344
            N + N +   I     +    Q L+         I + L      +L      + + + 
Sbjct: 184 LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 345 --HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
                       +++ + L+ + F      +    S L+ L L     L ++P  L  L+
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLS 301

Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNM 460
            L+ +++  N  E    +      SL  L I  N     L + C   L +++++ LS + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 461 LHG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQL 518
           +           N S L +L+LSYN       +      QL  L L    L+  +     
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 519 CELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574
             L+ L++L+LS++ L       FD       L+   ++    + Q              
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------- 474

Query: 575 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 634
                                  L  L  L LS   L         +L  +  ++LSHN 
Sbjct: 475 -----------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 635 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685
           LT S     S+LK +  L+L++N ++  +P  L  L      ++  N L  
Sbjct: 512 LTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  221 bits (566), Expect = 3e-63
 Identities = 93/506 (18%), Positives = 177/506 (34%), Gaps = 25/506 (4%)

Query: 52  MPSLKYLSLSYYTLGTNSSGTLDQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           + +L +L L+           + +    S   L  L + +N L       ++   +L+ L
Sbjct: 56  LINLTFLDLTR-----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
                 ++ SI   PL +  ++E L L +N+    I L   F   +LK+ + +NN I   
Sbjct: 111 FFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH-- 166

Query: 171 ITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 230
              S   ++   Q   LSL+ N  D        +     + ++    +        L  +
Sbjct: 167 -YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 231 N-TKLETLFLVNDSLAGPFRLPIHSHKR--LRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
               L      +                  +  +++  +     I          L   +
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELD 284

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
            +   L   +PS    +  L+ L LS N     + +  A    +L  L++  N  +  L 
Sbjct: 285 LTATHL-SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 348 SRNF-NLTNLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
           +    NL NL+ L L  +           L   S L+ L L+ N  L           +L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 405 QYIIMPNNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH 462
           + + +    L+       F  L  L++L++S + +  S    F  L +++ ++L  N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 463 G--QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 520
                K  +      L  L LS+  L+         L  ++H+ L HN L       L  
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 521 LNQLQLLDLSNNNLHGPIPPCFDNTT 546
           L  +  L+L++N++   +P      +
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (538), Expect = 3e-59
 Identities = 105/594 (17%), Positives = 193/594 (32%), Gaps = 80/594 (13%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
             + L  + N L        + + +L  LD++  Q+   I          ++ L+L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
               ++   L     LK        I +        +  +  L +L L SN+      PK
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSNHISSIKLPK 148

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL-VNDSLAGPFRLPIHSHKRLRQ 260
               +  L+ +D  +  ++       + +  +   L L +N +               + 
Sbjct: 149 GFPTEK-LKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 261 LDVSNNNIRGHIPVKI-GDVLPSLYVFNNSMNALDGSIPSSFGNMKF--LQILDLSNNHL 317
           L+         I   +    + SL++        +   P+ F  +    ++ ++L  ++ 
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 377
                         LQ L L+  +L   L S    L+ L+ L L  N+F      S S  
Sbjct: 267 FNISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 378 SSLEGLYLNNNSLLGKI-PRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLDSLQILDIS 434
            SL  L +  N+   ++    L NL  L+ + + ++ +E      ++   L  LQ L++S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 435 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
            N                            LK   F  C  L  LDL++ RL        
Sbjct: 385 YNEPLS------------------------LKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 495 -DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES--- 550
              L  L  L L H+ L+         L  LQ L+L  N+         ++         
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 551 ---YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607
                                     L   +   F                  ++ +DLS
Sbjct: 481 LVLSFCD-------------------LSSIDQHAFTSLKM-------------MNHVDLS 508

Query: 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661
            N+L       + +L  I  LNL+ N+++  +PS    L    +++L  N L+ 
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (533), Expect = 1e-58
 Identities = 89/504 (17%), Positives = 163/504 (32%), Gaps = 51/504 (10%)

Query: 204 YHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV 263
             +   +  +  ++ +N E P  L  +    E L    + L             L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 264 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE 323
           +   I   I          L     + N L     ++    K L+ L      ++     
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 324 HLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 383
            L      L+ L L +N++      + F    L+ L  + N       + +S       L
Sbjct: 124 PLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 384 YLN-NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP--VEFCQLDSLQILDISDNNISG 440
            LN N + +  I     +    Q +          I   ++   + SL +    D +   
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 441 SLPSCFHP---LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 497
             P+ F     +S++ ++L K+     +   TF   S L  LDL+   L+  +P  + GL
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 498 SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESYS 552
           S L  L+L  N  E    +       L  L +  N     +   C +N      L  S+ 
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 612
           +  + D       +                               LS L  L+LS N+ +
Sbjct: 361 DIETSDCCNLQLRN-------------------------------LSHLQSLNLSYNEPL 389

Query: 613 GHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELK 671
                      +++ L+L+   L      S F NL  ++ L+LS++ L+         L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 672 TLEVFSVAYNNLSGEIPEWKAQFA 695
            L+  ++  N+      +      
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  186 bits (474), Expect = 1e-50
 Identities = 96/501 (19%), Positives = 164/501 (32%), Gaps = 57/501 (11%)

Query: 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 266
           +  E ++ S   +     N        L  L L    +         S  RL  L ++ N
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 267 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 326
            +   +         +L         +         N K L+ L L +NH++  I     
Sbjct: 92  PLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKG 149

Query: 327 VGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR-FVGEIPQSLSKCSSLEGLY 384
                L+ L   NN +  +L   +  +L     L L  N   +  I       +  + L 
Sbjct: 150 FPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 385 LNNNSLLGKIPRWLGN--LTRLQYIIMPNNHLEGPIPVEFCQLD--SLQILDISDNNISG 440
                 L  I + L N  +  L      +   E   P  F  L   S++ +++  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 441 SLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499
              + FH    ++++ L+   L  +L  G     S+L  L LS N+              
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 500 LSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLH--GPIPPCFDN----TTLHESYS 552
           L+HL +  N    E+    L  L  L+ LDLS++++           N     +L+ SY+
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 612
                                      E F+   +             L  LDL+  +L 
Sbjct: 387 E--------------------PLSLKTEAFKECPQ-------------LELLDLAFTRLK 413

Query: 613 GHIPP-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI---PHQLV 668
                    NL  ++ LNLSH+ L  S    F  L  ++ L+L  N          + L 
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 669 ELKTLEVFSVAYNNLSGEIPE 689
            L  LE+  +++ +LS     
Sbjct: 474 TLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (423), Expect = 8e-44
 Identities = 89/531 (16%), Positives = 162/531 (30%), Gaps = 53/531 (9%)

Query: 10  VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNS 69
           +      + K+LE   +    I          +S           LK L      +   S
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHI----------SSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 70  SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTG-SISSSPLVH 128
              +   L        L +  ND+   +     +    + L+    Q             
Sbjct: 170 KEDM-SSLQQA-TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 129 LTSIEELMLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTL 187
           + S+      +     I  ++        ++  N + +      + +    +    L  L
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS---GLQEL 283

Query: 188 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV-NDSLAG 246
            L++ +      P  L     L+ + LS  K           N   L  L +  N     
Sbjct: 284 DLTATHLSEL--PSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLE 340

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRG-HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 305
                + + + LR+LD+S+++I            L  L   N S N        +F    
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 364
            L++LDL+   L  +  +        L+ L LS++ L      + F  L  LQ L L+GN
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGN 459

Query: 365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ 424
            F     Q                         L  L RL+ +++    L       F  
Sbjct: 460 HFPKGNIQK---------------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 425 LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           L  +  +D+S N ++ S       L    ++L+ N +   +        S   T++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQN 557

Query: 485 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNL 534
            L+ +                 +     +    LCE    L+ + LS+  L
Sbjct: 558 PLDCTC-----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  210 bits (537), Expect = 3e-59
 Identities = 90/501 (17%), Positives = 172/501 (34%), Gaps = 36/501 (7%)

Query: 51  SMPSLKYLSLSYYTLGTNS-SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
            +  L  L L+      N            L  L+ L      L     + +  + +L+ 
Sbjct: 78  GLHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSR-LKIFNAENNE 166
           L+V+ N +      +   +LT++  + LS NY Q      L+ L    +     +   N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN- 191

Query: 167 IKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW 226
               I           +L+ L+L  N+    I    L +   L    L   +   E    
Sbjct: 192 ---PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 227 LLENNT-------KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
           + E +         ++   L   +      +  H    +  + ++  +I+    V     
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
             SL +    +            ++ FL+ L L+ N  +    +   V   +L +L LS 
Sbjct: 309 WQSLSIIRCQLKQF------PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSR 359

Query: 340 NNLQ--GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
           N L   G     +    +L+ L L  N  +  +  +      L+ L   +++L       
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 398 -LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCF--HPLSIKQV 454
              +L +L Y+ +   + +      F  L SL  L ++ N+   +  S    +  ++  +
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
            LSK  L   +  G F     L  L++S+N L        + L  LS L    N +E   
Sbjct: 479 DLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 515 SVQLCELNQLQLLDLSNNNLH 535
            +       L   +L+NN++ 
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (530), Expect = 3e-58
 Identities = 108/616 (17%), Positives = 202/616 (32%), Gaps = 103/616 (16%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
             + + ++ N L+    +  +N + L+ LD+S  ++      +    L  +  L+L+ N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNP 91

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
            Q   S       + L+   A   ++ +  +     I     L  L+++ N+      P 
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFP---IGQLITLKKLNVAHNFIHSCKLPA 147

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL 261
           +  +  +L +VDLS+  +     N                       +    + +    L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVND---------------------LQFLRENPQVNLSL 186

Query: 262 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNHLTGE 320
           D+S N I   I  +       L+      N    +I      N+  L +  L       E
Sbjct: 187 DMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 321 -----IPEHLAVGCVNLQF--LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 373
                    +  G  ++      L+  N       +   L N+  + L G     +  + 
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302

Query: 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 433
           + K    + L +    L  + P    +L  L+ + +  N            L SL  LD+
Sbjct: 303 VPKHFKWQSLSIIRCQL-KQFP--TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDL 357

Query: 434 SDNNISGSLPSCFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 490
           S N +S S    +  L   S++ + LS N     +    F     L  LD  ++ L    
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 491 PDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLH 548
                  L +L +L + + N + +       L  L  L ++ N+     +   F N    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---- 471

Query: 549 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 608
                                                             + L+ LDLS 
Sbjct: 472 -------------------------------------------------TTNLTFLDLSK 482

Query: 609 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 668
            +L          L R+Q LN+SHNNL     S ++ L  + +LD S N++         
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 669 ELKTLEVFSVAYNNLS 684
             K+L  F++  N+++
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (524), Expect = 2e-57
 Identities = 106/636 (16%), Positives = 191/636 (30%), Gaps = 123/636 (19%)

Query: 46  QIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMT 105
           ++  +   S K + LS+  L    S +      +   LQ L ++  ++          + 
Sbjct: 25  KVPDDIPSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 106 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSRLKIFNAE 163
            L  L ++ N +  S S      LTS+E L+             +  L            
Sbjct: 81  HLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT---------- 129

Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
                               L  L+++ N+      P +  +  +L +VDLS+  +    
Sbjct: 130 --------------------LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 224 PN---WLLENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKI 276
            N   +L EN     +L +  + +       F+       +L +L +  N    +I    
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-----KLHELTLRGNFNSSNIMKTC 224

Query: 277 GDVLPSLYVFNNSMNALDGSI------PSSFGNMKFLQI--LDLSNNHLTGEIPEHLAVG 328
              L  L+V    +             PS    +  + I    L+  +   +        
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH-C 283

Query: 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 388
             N+  ++L+  +++             Q L +   +        L     L+ L L  N
Sbjct: 284 LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMN 338

Query: 389 SLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLDSLQILDISDNNISGSLPSCF 446
                I      L  L Y+ +  N L   G         +SL+ LD+S N     + + F
Sbjct: 339 KG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF 395

Query: 447 HPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLIL 505
             L  ++ +    + L    +   F +   L+ LD+SY            GL+ L+ L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 506 GHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF 564
             N+ +             L  LDLS   L       FD                     
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT-------------------- 495

Query: 565 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 624
                                            L  L  L++S N L+         L  
Sbjct: 496 ---------------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
           + TL+ S N +  S        K +   +L+NN + 
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (398), Expect = 2e-40
 Identities = 79/406 (19%), Positives = 138/406 (33%), Gaps = 34/406 (8%)

Query: 295 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NL 353
           GS+      +  +      +  L+ ++P+ +     + + + LS N L+  L S +F N 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLK-ILKSYSFSNF 55

Query: 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 413
           + LQWL L          ++      L  L L  N +    P     LT L+ ++     
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 414 LEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFF 471
           L         QL +L+ L+++ N I    LP+ F  L ++  V LS N +   +      
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQ 174

Query: 472 N----CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQL 526
                    ++LD+S N ++  I D      +L  L L  N     +    L  L  L +
Sbjct: 175 FLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 527 LDLS------NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 580
             L         NL    P   +            +    F            +   +  
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS-- 291

Query: 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 640
                  +I Y+           L +   + +   P    +L  +++L L+ N    SI 
Sbjct: 292 ---LAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTL--DLPFLKSLTLTMNKG--SIS 343

Query: 641 STFSNLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLS 684
                L  +  LDLS N L+        +L T  L    +++N   
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 7e-13
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
            S L  LDLS  ++          L  +  L L+ N +    P +FS L  +E+L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLSG 685
           KL       + +L TL+  +VA+N +  
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 20/86 (23%), Positives = 32/86 (37%)

Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
           +DLS N L         N + +Q L+LS   +       +  L H+ +L L+ N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 664 PHQLVELKTLEVFSVAYNNLSGEIPE 689
           P     L +LE        L+     
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESF 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 33  LNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND 92
           L  +  +   + L  +  +  +L +L LS   L   S G  D    +L  LQ L ++ N+
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD----TLHRLQLLNMSHNN 508

Query: 93  LRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
           L          + SL  LD S N++  +          S+    L+NN
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (473), Expect = 2e-49
 Identities = 132/715 (18%), Positives = 231/715 (32%), Gaps = 109/715 (15%)

Query: 80  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 139
           L   + L ++ N +R         +  L++L++ S     +I      +L ++  L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 140 NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 199
           +     +  +       L         +   + +       K  L  L LS N       
Sbjct: 83  SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYL 140

Query: 200 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN--NTKLETLFL------VNDSLAGPFRLP 251
                  + L+ +D S  ++        LE      L    L         S+     + 
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 311
              +  L  LDVS N     I               N  NA+  S   S      +    
Sbjct: 200 PFRNMVLEILDVSGNGWTVDIT-------------GNFSNAISKSQAFSLILAHHIMGAG 246

Query: 312 LSNNHLTGEIPEHLAVG--CVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRF 366
              +++  +  ++   G    +++ L LS+  +      +F     L +L+ L L  N+ 
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TLKDLKVLNLAYNKI 302

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
                ++     +L+ L L+ N L          L ++ YI +  NH+       F  L+
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
            LQ LD+ DN ++    +     SI  + LS N L   L +       +   + LS NRL
Sbjct: 363 KLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINL----TANLIHLSENRL 413

Query: 487 NG-SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIPPCFDN 544
               I  ++  +  L  LIL  N        Q       L+ L L  N L          
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
                                                                LS L  L
Sbjct: 474 DVFEG------------------------------------------------LSHLQVL 485

Query: 605 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
            L+ N  +  +PP +  +LT ++ L+L+ N LT    +      ++E LD+S N+L    
Sbjct: 486 YLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPN 542

Query: 664 PHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSPATM 722
           P   V L  L+   + +N    E      + +TF       N  + G P  I C  P + 
Sbjct: 543 PDVFVSLSVLD---ITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADIYCVYPDSF 594

Query: 723 PEASIGN----EQDDNLIDMDSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYF 773
              S+ +      D+  +     F  F    V +   ++ +L V  +    +  +
Sbjct: 595 SGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 6e-35
 Identities = 72/360 (20%), Positives = 123/360 (34%), Gaps = 31/360 (8%)

Query: 337 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI-P 395
               NL   +      L   + L L  N        S      L+ L L +      I  
Sbjct: 11  YRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 396 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL--PSCFHPL-SIK 452
               NL  L+ + + ++ +    P  F  L  L  L +    +S ++     F  L ++ 
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 453 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ--LSHLILGHNNL 510
           ++ LSKN +       +F   +SL ++D S N++       ++ L    LS   L  N+L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 511 EGEVSVQLCELNQ------LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF 564
              VSV   +         L++LD+S N     I   F N        +           
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 565 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 624
           F             H I +         + G   S +  LDLS   +          L  
Sbjct: 247 FG-----------FHNIKDPD----QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           ++ LNL++N +       F  L +++ L+LS N L          L  +    +  N+++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (268), Expect = 5e-24
 Identities = 77/444 (17%), Positives = 143/444 (32%), Gaps = 78/444 (17%)

Query: 17  HFKSLEHFDMDFTRIALNTSFIALNTSFLQIIS------ESMPSLKYLSLSYYTLGTNSS 70
            F +++  D +       +S   L+ S   + S      E++  LK L+L+Y  +   + 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307

Query: 71  GTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130
                    L +LQ L ++ N L          +  +  +D+  N +   I       L 
Sbjct: 308 EA----FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLE 362

Query: 131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 190
            ++ L L +N      +L  +     +       N++        +L       N + LS
Sbjct: 363 KLQTLDLRDN------ALTTIHFIPSIPDIFLSGNKLV-------TLPKINLTANLIHLS 409

Query: 191 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL 250
            N  +      FL     L+ + L+  + +    +     N  LE LFL           
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL----------- 458

Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
                          N ++     ++                        F  +  LQ+L
Sbjct: 459 -------------GENMLQLAWETELC--------------------WDVFEGLSHLQVL 485

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 370
            L++N+L   +P  +      L+ L+L++N L     S N    NL+ L +  N+ +   
Sbjct: 486 YLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPN 542

Query: 371 PQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNN--HLEGPIPVEFCQLDS 427
           P       SL  L + +N  + +       N      + +      +    P  F  + S
Sbjct: 543 PDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV-S 598

Query: 428 LQILDISDNNISGSLPSCFHPLSI 451
           L  L     +    L S    L I
Sbjct: 599 LFSLSTEGCDEEEVLKSLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 7e-09
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIIS---------ESMPSLKYLSLSYYTL 65
           F     + + D+    IA+           LQ +            +PS+  + LS    
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG--- 390

Query: 66  GTNSSGTLDQGLCSLVHLQELYIASNDLRG-SLPWCMANMTSLRILDVSSNQLTGSISSS 124
             N   TL +   +      ++++ N L    + + +  +  L+IL ++ N+ +      
Sbjct: 391 --NKLVTLPKINLT---ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 125 PLVHLTSIEELMLSNNYFQIP----ISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 180
                 S+E+L L  N  Q+     +  +     S L++    +N +    +    + + 
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN---SLPPGVFSH 502

Query: 181 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKL 234
              L  LSL+SN               +LE +D+S  ++    P+  +  +   
Sbjct: 503 LTALRGLSLNSN---RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLD 553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 17/152 (11%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLD 74
                 L+   ++  R     S  + + +         PSL+ L L    L       L 
Sbjct: 422 LLRVPHLQILILNQNRF----SSCSGDQTP-----SENPSLEQLFLGENMLQLAWETELC 472

Query: 75  QG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
                 L HLQ LY+  N L    P   +++T+LR L ++SN+LT     S      ++E
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLE 529

Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENN 165
            L +S N     +       +  L + +  +N
Sbjct: 530 ILDISRN----QLLAPNPDVFVSLSVLDITHN 557

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (443), Expect = 1e-46
 Identities = 93/474 (19%), Positives = 171/474 (36%), Gaps = 29/474 (6%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
           +S+  L  L L+   + + + G        L  LQ+L     +L     + + ++ +L+ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L+V+ N +          +LT++E L LS+N  Q  I    L    ++ + N   +    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-----EFP 224
            +         + +L+ L+L +N+    +    +     LE   L   +        +F 
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 225 NWLLENNTKLETLFL---VNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
              LE    L          D          +    +    + +  I             
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
            L + N                +K L+ L  ++N       E   V   +L+FL LS N 
Sbjct: 308 HLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG 358

Query: 342 LQ--GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-L 398
           L   G     +F  T+L++L L  N  +  +  +      LE L   +++L         
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL-SIKQVHL 456
            +L  L Y+ + + H        F  L SL++L ++ N+   +     F  L ++  + L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 457 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
           S+  L  QL    F + SSL  L+++ N+L        D L+ L  + L  N  
Sbjct: 478 SQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (419), Expect = 2e-43
 Identities = 102/504 (20%), Positives = 178/504 (35%), Gaps = 47/504 (9%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCS-LVHLQELYIASNDLRGSLPWCMANMTSLRI 109
           S P L+ L LS          T++ G    L HL  L +  N ++       + ++SL+ 
Sbjct: 50  SFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L      L  S+ + P+ HL +++EL +++N  Q     E   N + L+  +  +N+I++
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 170 EITES-HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL 228
                   L        +L LS N  +        + +  L  + L +   +       +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 229 ENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 288
           +    LE   LV                       +  N+         + L +L +   
Sbjct: 222 QGLAGLEVHRLVLGEFR------------------NEGNLE-KFDKSALEGLCNLTIEEF 262

Query: 289 SMNALDGS---IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 345
            +  LD     I   F  +  +    L +  +   + +         Q L L N      
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQF 319

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTR 403
                  L +L+ L    N+       S     SLE L L+ N L   G   +     T 
Sbjct: 320 ---PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 404 LQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLSKNML 461
           L+Y+ +  N +   +   F  L+ L+ LD   +N+   S  S F  L ++  + +S    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 462 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE 520
                 G F   SSL  L ++ N    +    +   L  L+ L L    LE         
Sbjct: 434 RV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 521 LNQLQLLDLSNNNLHGPIPPCFDN 544
           L+ LQ+L++++N L       FD 
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDR 516

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (412), Expect = 1e-42
 Identities = 97/482 (20%), Positives = 184/482 (38%), Gaps = 33/482 (6%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
             + L ++ N LR    +   +   L++LD+S  ++  +I       L+ +  L+L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
            Q  ++L      S L+   A    +    +  +  I     L  L+++ N    F  P+
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIH----SHKR 257
           +  +  +LE++DLS  K+        L    ++  L L  D L+      I        R
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIR 201

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI------PSSFGNMKFLQILD 311
           L +L + NN    ++       L  L V    +              S+   +  L I +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 312 LSNNHLTGEIPEHLAV--GCVNLQFLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVG 368
               +L   + + + +     N+   +L +  ++    FS NF   +L+ +  +  +F  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-- 319

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLD 426
                  K  SL+ L   +N           +L  L+++ +  N L   G          
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
           SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN 544
              +     +GLS L  L +  N+ +         EL  L  LDLS   L    P  F++
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 545 TT 546
            +
Sbjct: 493 LS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (400), Expect = 5e-41
 Identities = 81/441 (18%), Positives = 151/441 (34%), Gaps = 37/441 (8%)

Query: 262 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 321
                N    IP  +     +L +   S N L      SF +   LQ+LDLS   +   I
Sbjct: 13  QCMELNFY-KIPDNLPFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 322 PEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSL 380
            +       +L  L L+ N +Q  L    F  L++LQ L              +    +L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 381 EGLYLNNNSLL-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI----LDISD 435
           + L + +N +   K+P +  NLT L+++ + +N ++     +   L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL------SYNRLNGS 489
           N ++   P  F  + + ++ L  N     + +      + L    L      +   L   
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 490 IPDWVDGLSQLSHLILGHNNLEGEVSVQ---LCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
               ++GL  L+        L+  +         L  +    L +  +   +     N  
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFG 305

Query: 547 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                  +    +   +         F   +    F               L  L  LDL
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-----------LPSLEFLDL 354

Query: 607 SCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664
           S N L   G         T ++ L+LS N +  ++ S F  L+ +E LD  ++ L     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 665 H-QLVELKTLEVFSVAYNNLS 684
               + L+ L    +++ +  
Sbjct: 414 FSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 2e-34
 Identities = 100/590 (16%), Positives = 169/590 (28%), Gaps = 144/590 (24%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
            S + LD+S N L   + S        ++ L LS    Q   ++E               
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIED-------------- 69

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
                              L+TL L+ N                     +  +       
Sbjct: 70  -----------GAYQSLSHLSTLILTGNP--------------------IQSL------A 92

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
                  + L+ L  V  +LA     PI   K L++L+V++N I+     +    L +L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQI----LDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 340
             + S N +     +    +  + +    LDLS N +   I        + L  L L NN
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE-IRLHKLTLRNN 210

Query: 341 NLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
               ++       L  L+  +L    F  E        S+LEGL                
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL---------------C 255

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459
           NLT  ++ +   ++    I   F  L ++    +    I   +    +    + + L   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNC 314

Query: 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE--GEVSVQ 517
                          SL  L  + N+   +  +    L  L  L L  N L   G  S  
Sbjct: 315 KFGQF----PTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 518 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQ 577
                 L+ LDLS N +   +   F                                   
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLG--------------------------------- 394

Query: 578 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNL 635
                               L  L  LD   + L   +       +L  +  L++SH + 
Sbjct: 395 --------------------LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 433

Query: 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLS 684
             +    F+ L  +E L ++ N            EL+ L    ++   L 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (336), Expect = 7e-33
 Identities = 79/426 (18%), Positives = 160/426 (37%), Gaps = 41/426 (9%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
             + +LK L++++  +    S  L +   +L +L+ L ++SN ++      +  +  + +
Sbjct: 121 GHLKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 110 ----LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN 165
               LD+S N +   I       +  + +L L NN+  + +    +   + L++      
Sbjct: 178 LNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 166 EIK-----AEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 220
           E +      +  +S         +    L+                 ++    L  + + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 221 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-------------------LRQL 261
                     N   + L LVN        L + S KR                   L  L
Sbjct: 296 RVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 262 DVSNNNIRG-HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
           D+S N +       +      SL   + S N +  ++ S+F  ++ L+ LD  +++L   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQ-SLSKCS 378
               + +   NL +L +S+ + +   F+  F  L++L+ L++ GN F         ++  
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 438
           +L  L L+   L    P    +L+ LQ + M +N L+      F +L SLQ + +  N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 439 SGSLPS 444
             S P 
Sbjct: 531 DCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 19/86 (22%), Positives = 32/86 (37%)

Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
           LDLS N L         +   +Q L+LS   +       + +L H+ +L L+ N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 664 PHQLVELKTLEVFSVAYNNLSGEIPE 689
                 L +L+       NL+     
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENF 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664
                     IP  +      + L+LS N L      +F +   ++ LDLS  ++     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 665 HQLVELKTLEVFSVAYNNLSGEIPEW 690
                L  L    +  N +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA 95

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  165 bits (419), Expect = 1e-43
 Identities = 93/565 (16%), Positives = 175/565 (30%), Gaps = 70/565 (12%)

Query: 106 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN 165
           +  + D  S   T    S P     +++ L LS N     I    L   + L++   +++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 166 EIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN 225
            I                              I     Y    LE++DLS   ++    +
Sbjct: 61  RIN----------------------------TIEGDAFYSLGSLEHLDLSDNHLS-SLSS 91

Query: 226 WLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
                 + L+ L L+ +            +   L+ L + N      I       L SL 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 344
                  +L      S  +++ +  L L  +     + E  A    ++++L L + NL  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 345 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
             FS          ++    R      +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLN 264

Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHG 463
                  +  +    +   +  +++ L I    +   L + +  L  +K++ +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDW---VDGLSQLSHLILGHNNLE--GEVSVQL 518
            +      +  SL  LDLS N +                L  L+L  N+L    +    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 519 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHE---SYSNSSSPDEQFEIFFSIEGHQGFLE 575
             L  L  LD+S N  H     C     +     S +          +   I      L+
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV------VKTCIPQTLEVLD 437

Query: 576 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635
             N+ +  F+            L  L  L +S NKL   +P        +  + +S N L
Sbjct: 438 VSNNNLDSFSLF----------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485

Query: 636 TGSIPSTFSNLKHVESLDLSNNKLN 660
                  F  L  ++ + L  N  +
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  156 bits (397), Expect = 9e-41
 Identities = 92/487 (18%), Positives = 172/487 (35%), Gaps = 38/487 (7%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
            ++ L ++ N +       +    +L++L + S+++  +I       L S+E L LS+N+
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
               +S       S LK  N   N  +       SL      L TL + +      I   
Sbjct: 86  LSS-LSSSWFGPLSSLKYLNLMGNPYQTL--GVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL 261
                  L  +++  + +   + +  L++   +  L L     A    +       +R L
Sbjct: 143 DFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 262 DVSNNNIRG--HIPVKIGDVLPSLYVFNNSMNALDG-------SIPSSFGNMKFLQILDL 312
           ++ + N+      P+ + +V   +       + L          +      +  ++  D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 313 SNNHLT-------GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 365
           + N L          + E   V  V ++ L +    L   L +    L  ++ + +E ++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 366 FVGEIPQSLSKCSSLEGLYLNNN---SLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPV 420
                        SLE L L+ N       K     G    LQ +++  NHL        
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 421 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
               L +L  LDIS N       SC  P  ++ ++LS   +   +K        +L  LD
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---QTLEVLD 437

Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIP 539
           +S N L+ S       L +L  L +  N L+   ++        L ++ +S N L     
Sbjct: 438 VSNNNLD-SFSL---FLPRLQELYISRNKLK---TLPDASLFPVLLVMKISRNQLKSVPD 490

Query: 540 PCFDNTT 546
             FD  T
Sbjct: 491 GIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  156 bits (397), Expect = 9e-41
 Identities = 77/492 (15%), Positives = 169/492 (34%), Gaps = 36/492 (7%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
           +  +L+ L L       +   T++     SL  L+ L ++ N L          ++SL+ 
Sbjct: 48  ACANLQVLILKS-----SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L++  N       +S   +LT+++ L + N      I        + L     +   ++ 
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR- 161

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
                   +     ++ L+L  +    F+   F      + Y++L    +   F    L 
Sbjct: 162 --NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLP 217

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289
            +     +  +    +       +   +L +  +  + +                + + +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD-------CTLNGLGDFN 270

Query: 290 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR 349
            +  D            ++ L +   +L       +      ++ + + N+ +   +   
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPCS 328

Query: 350 NF-NLTNLQWLQLEGNRFVGEIPQS---LSKCSSLEGLYLNNNSL--LGKIPRWLGNLTR 403
              +L +L++L L  N  V E  ++        SL+ L L+ N L  + K    L  L  
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 404 LQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 463
           L  + +  N    P+P      + ++ L++S   I   + +C  P +++ + +S N L  
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-PQTLEVLDVSNNNL-- 443

Query: 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 523
                       L  L +S N+L  ++PD       L  + +  N L+         L  
Sbjct: 444 ---DSFSLFLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 524 LQLLDLSNNNLH 535
           LQ + L  N   
Sbjct: 499 LQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  153 bits (389), Expect = 1e-39
 Identities = 90/537 (16%), Positives = 189/537 (35%), Gaps = 59/537 (10%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
            +++ LD+S N++T  I    L    +++ L+L ++     I  +  ++   L+  +  +
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
           N +    + S S   P   L  L+L  N            +  +L+ + + +++   E  
Sbjct: 84  NHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
                  T L  L +   SL       + S + +  L +  +     +     D+L S+ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 344
                   L     S     +    +       +  + +      + L    L  + ++ 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE- 257

Query: 345 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
                +  L  L       +  V E+ +   +  ++  L++    L   +      L ++
Sbjct: 258 ---FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL---PSCFHPL-SIKQVHLSKNM 460
           + I + N+ +          L SL+ LD+S+N +        +C     S++ + LS+N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 461 LHG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 519
           L   Q          +L +LD+S N  +  +PD      ++  L L    +     V+ C
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTC 428

Query: 520 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579
               L++LD+SNNNL           +               E++ S          +N 
Sbjct: 429 IPQTLEVLDVSNNNL----------DSFSLFLPRLQ------ELYIS----------RNK 462

Query: 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNL 635
                    +  +    +  +L  + +S N+ +  +P  I   LT +Q + L  N  
Sbjct: 463 ---------LKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (378), Expect = 3e-38
 Identities = 85/451 (18%), Positives = 163/451 (36%), Gaps = 38/451 (8%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           ++ LD+S N I  +I         +L V     + ++     +F ++  L+ LDLS+NHL
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSLS 375
           +  +         +L++L L  N  Q    +  F NLTNLQ L++       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
             +SL  L +   SL     + L ++  + ++ +  +     + +    L S++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT----------LDLSYNR 485
            N++    S      +             L   +F     L+            D + N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 486 LNGSIPDWVDGLS--------QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 537
           L    P   D +S         +  L +    L  ++S     L +++ + + N+ +   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 538 IPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 593
                 +      L  S +       +             L    + +     +    I 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEIL 383

Query: 594 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 653
               L  L+ LD+S N     +P       +++ LNLS   +   + +     + +E LD
Sbjct: 384 LT--LKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLD 437

Query: 654 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           +SNN L+      L  L+ L    ++ N L 
Sbjct: 438 VSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 9e-36
 Identities = 74/401 (18%), Positives = 137/401 (34%), Gaps = 30/401 (7%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 365
             + D  +   T  IP  L      ++ L LS N +  ++   +     NLQ L L+ +R
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQ 424
                  +     SLE L L++N L      W G L+ L+Y+ +  N      +   F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 425 LDSLQILDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
           L +LQ L I +      +    F  L S+ ++ +    L    +  +  +   +  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 483 YNRLNGSIPDWVDGLSQLSHLILGHNNLEG-----------EVSVQLCELNQLQLLDLSN 531
            +     +  + D LS + +L L   NL                ++        L D S 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N L   +    + + +       +   +       +    G +E             + Y
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 592 IYQG--KVLSLLSGLDLSCNKLIGHIPPQIG-NLTRIQTLNLSHNNLTGSIPST---FSN 645
                  +L  +  + +  +K +  +P     +L  ++ L+LS N +             
Sbjct: 301 DLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 646 LKHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNNLS 684
              +++L LS N L    K    L+ LK L    ++ N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 45/265 (16%), Positives = 82/265 (30%), Gaps = 58/265 (21%)

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
              D+  + D    + + S+PS     ++K + LS N +   +  G    C++L  L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 483 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG-PIPPC 541
            +R+N    D    L  L HL L  N+L    S     L+ L+ L+L  N      +   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 542 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 601
           F N                                                     L+ L
Sbjct: 119 FPN-----------------------------------------------------LTNL 125

Query: 602 SGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
             L +   +    I       LT +  L +   +L      +  +++ +  L L  ++  
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSG 685
             +      L ++    +   NL+ 
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLAR 210

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  158 bits (401), Expect = 9e-42
 Identities = 66/399 (16%), Positives = 138/399 (34%), Gaps = 24/399 (6%)

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
                +   + ++L  ++ S   +   ++ LDLS N L+      LA     L+ L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSS 67

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
           N L         +L+ L+ L L  N       Q L    S+E L+  NN++  ++     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS--CS 117

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLS 457
                + I + NN +     ++      +Q LD+  N I   +         +++ ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 517
            N ++  +K       + L TLDLS N+L   +       + ++ + L +N L   +   
Sbjct: 178 YNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 518 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQ 577
           L     L+  DL  N  H      F +           +  +   +    E         
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK---LTGQNEEECTVPTLG 289

Query: 578 NHEIFEFTTKNIAYIYQGKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635
           ++  +        +  +   L     + L    ++    +  +  N  R + ++      
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKEQY 348

Query: 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 674
              I       +   +L+     L+ ++ +       L+
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (320), Expect = 4e-31
 Identities = 78/506 (15%), Positives = 155/506 (30%), Gaps = 67/506 (13%)

Query: 96  SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS 155
           ++     N    +I  V+ + L     +S      +++EL LS N     IS   L  ++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT 58

Query: 156 RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS 215
           +L++ N  +N +  E  +  SL      L TL L++NY                    + 
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLS----TLRTLDLNNNY--------------------VQ 93

Query: 216 HIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 275
            +                +ETL   N++++   R+     +  + + ++NN I     + 
Sbjct: 94  EL-----------LVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLD 139

Query: 276 IGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 333
            G    +  L +  N ++ ++        +   L+ L+L  N +  ++   +      L+
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 334 FLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-L 391
            L LS+N L        F +   + W+ L  N+ V  I ++L    +LE   L  N    
Sbjct: 195 TLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 392 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-- 449
           G +  +     R+Q +      ++        +     +                  L  
Sbjct: 252 GTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 450 --SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507
               +   LS      +       N +    +D    +    I            L    
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 508 NNLEGEVS---VQLCELNQLQLLDLSNNNLHGP---IPPCFDNTTLHESYSNSSSP--DE 559
             L+ +VS       EL+      +    L        P      + + Y          
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 560 QFEIFFSIEGHQGFLEKQNHEIFEFT 585
           Q       + +Q    +   E     
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLK 455

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 6e-31
 Identities = 73/519 (14%), Positives = 156/519 (30%), Gaps = 77/519 (14%)

Query: 48  ISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL 107
           I ++    K   ++  +L    +        S  +++EL ++ N L       +A  T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQ----SAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 108 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 167
            +L++SSN L     +  L  L+++  L L+NN       ++ L     ++  +A NN I
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNI 111

Query: 168 KAEITESHSLIAPKFQ-LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW 226
                    +   + Q    + L++N                     ++ +       + 
Sbjct: 112 S-------RVSCSRGQGKKNIYLANN--------------------KITML------RDL 138

Query: 227 LLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYV 285
                ++++ L L  + +    F     S   L  L++  N I   +  ++      L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 345
            + S N L   +   F +   +  + L NN L   I + L     NL+   L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 405
              R+F   N +   +          Q+  +C+     +            +   L  L 
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL- 310

Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 465
                             +     +L    +          +    +++   K      +
Sbjct: 311 ------------------KRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TV 351

Query: 466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQ 525
                    + +TL+     L+  + +     ++L   +        E+     E + LQ
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQ 410

Query: 526 LLD-LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEI 563
           LL  +        +            +      + Q   
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 9e-31
 Identities = 58/464 (12%), Positives = 139/464 (29%), Gaps = 29/464 (6%)

Query: 227 LLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 286
           + +N  + +   + + SL         S   +++LD+S N +       +      L + 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELL 63

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 346
           N S N L         ++  L+ LDL+NN++  E+         +++ L  +NNN+    
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNIS--- 112

Query: 347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG-KIPRWLGNLTRLQ 405
                     + + L  N+            S ++ L L  N +          +   L+
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ 464
           ++ +  N +   +  +      L+ LD+S N ++  +   F     +  + L  N L   
Sbjct: 173 HLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 465 LKRGTFFNCSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 523
           +++       +L   DL  N  + G++ D+     ++  +      ++        E   
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTV 285

Query: 524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 583
             L             P  D     +   ++     Q      +E       +      +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALL-SGQGSETERLE--CERENQARQREID 342

Query: 584 FTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 641
              +    +             L+     L   +         +             +  
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQH 401

Query: 642 TFSNLKHVESLDLSNNKLNGK-IPHQLVELKTLEVFSVAYNNLS 684
                  ++ L     +     +  Q V+   +  + +  +  +
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (294), Expect = 8e-28
 Identities = 54/351 (15%), Positives = 113/351 (32%), Gaps = 55/351 (15%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
           EI Q+ ++    +   + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 429 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN--TT 546
            +           ++ L +N +     +     +++Q LDL  N +             T
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 547 LHESY--SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
           L       N                                   I  +    V + L  L
Sbjct: 171 LEHLNLQYN----------------------------------FIYDVKGQVVFAKLKTL 196

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664
           DLS NK +  + P+  +   +  ++L +N L   I       +++E  DL  N  +    
Sbjct: 197 DLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 665 HQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI 715
                 K   V +VA   +  ++     +  T     + G      LP P 
Sbjct: 255 RDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 1e-25
 Identities = 49/344 (14%), Positives = 115/344 (33%), Gaps = 52/344 (15%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           N    +  ++  +     +        +++ L L+ N L       L   T+L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 471
           N L   +      L +L+ LD+++N +   L       SI+ +H + N     + R +  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANN----NISRVSCS 117

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLS 530
                  + L+ N++           S++ +L L  N ++    +      + L+ L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 531 NNNLHGPIPPCFDNTTLHE---SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 587
            N ++  +        L     S +  +    +F+                         
Sbjct: 178 YNFIYD-VKGQVVFAKLKTLDLSSNKLAFMGPEFQS------------------------ 212

Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL-TGSIPSTFSNL 646
                      + ++ + L  NKL+  I   +     ++  +L  N    G++   FS  
Sbjct: 213 ----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 647 KHVESLDLSNNK-LNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
           + V+++     K L G+   +          +    +L     +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 548
           +I +     ++     +  ++L+  ++        ++ LDLS N L           T  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 549 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 608
                                          E+   ++  +      + LS L  LDL+ 
Sbjct: 59  -----------------------------KLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 609 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 668
           N +      ++     I+TL+ ++NN++    S     K+   + L+NNK+         
Sbjct: 90  NYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEG 141

Query: 669 ELKTLEVFSVAYNNLS 684
               ++   +  N + 
Sbjct: 142 CRSRVQYLDLKLNEID 157

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (377), Expect = 1e-39
 Identities = 69/407 (16%), Positives = 144/407 (35%), Gaps = 64/407 (15%)

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
             +L      +N +         ++       L    +T  + +       ++  L ++ 
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAG 53

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
             +          LTNL++L L GN+     P  LS    L  LY+  N +       L 
Sbjct: 54  EKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQ 107

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459
           NLT L+ + +  +++    P     L  +  L++  N+    L    +   +  + ++++
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 519
            +          N + L +L L+YN++    P  +  L+ L +     N +       + 
Sbjct: 166 KVK---DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218

Query: 520 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY--SNSSSPDEQFEIFFSIEGHQGFLEKQ 577
            + +L  L + NN +   + P  + + L      +N      Q     +++         
Sbjct: 219 NMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTN------QISDINAVKD-------- 263

Query: 578 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 637
                               L+ L  L++  N+ I  I   + NL+++ +L L++N L  
Sbjct: 264 --------------------LTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGN 301

Query: 638 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
                   L ++ +L LS N +    P  L  L  ++    A   + 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (357), Expect = 5e-37
 Identities = 73/363 (20%), Positives = 128/363 (35%), Gaps = 34/363 (9%)

Query: 77  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
              L       +    +   +      + S+  L V+  ++    S   + +LT++E L 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLN 72

Query: 137 LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
           L+ N       + PL N  +L       N+I  +I+   +L      L  L L+ +    
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT----NLRELYLNEDNISD 124

Query: 197 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 256
                 L     +  ++L       +     L N T L  L +    +      PI +  
Sbjct: 125 ISPLANL---TKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIANLT 177

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
            L  L ++ N I    P+     L     + N +  +     +   NM  L  L + NN 
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNK 232

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 376
           +T   P         L +L +  N +     +   +LT L+ L +  N+        L+ 
Sbjct: 233 ITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 377 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
            S L  L+LNNN L  +    +G LT L  + +  NH+    P     L  +   D ++ 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 437 NIS 439
            I 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (338), Expect = 2e-34
 Identities = 81/430 (18%), Positives = 153/430 (35%), Gaps = 87/430 (20%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
            +L  L    NQ+       P   L      +L        ++ E L     +       
Sbjct: 3   ATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAG 53

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
            ++                +  +   +N                LEY++L+  ++    P
Sbjct: 54  EKVA--------------SIQGIEYLTN----------------LEYLNLNGNQITDISP 83

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
              L N  KL  L++  + +       + +   LR+L ++ +NI    P+     L  +Y
Sbjct: 84  ---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLAN---LTKMY 135

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 344
             N   N    S  S   NM  L  L ++ + +    P  +A    +L  L+L+ N ++ 
Sbjct: 136 SLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYNQIED 191

Query: 345 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
              S   +LT+L +     N+     P  ++  + L  L + NN +    P  L NL++L
Sbjct: 192 --ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464
            ++ +  N +          L  L++L++  N IS  +                      
Sbjct: 246 TWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DISV-------------------- 282

Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 524
                  N S L +L L+ N+L     + + GL+ L+ L L  N++       L  L+++
Sbjct: 283 -----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 525 QLLDLSNNNL 534
              D +N  +
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (324), Expect = 1e-32
 Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 27/341 (7%)

Query: 209 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 268
                L    +         E    +  L +  + +A      I     L  L+++ N I
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQI 78

Query: 269 RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 328
               P+     L  L       N +  +  S+  N+  L+ L L+ ++++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 388
              +  L L  N+    L S   N+T L +L +  ++     P  ++  + L  L LN N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 389 SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP 448
            +    P  L +LT L Y     N +    P     +  L  L I +N I+   P     
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 449 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508
             +  + +  N +          + + L  L++  N+++      ++ LSQL+ L L +N
Sbjct: 244 -QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNN 297

Query: 509 NLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549
            L  E    +  L  L  L LS N++   I P    + +  
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 2e-25
 Identities = 60/354 (16%), Positives = 129/354 (36%), Gaps = 76/354 (21%)

Query: 332 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 391
              LA     +   +F  + +L       L+       +     +  S+  L +    + 
Sbjct: 2   AATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 392 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 451
             I   +  LT L+Y+ +  N +    P     L  L  L I  N I+  + +       
Sbjct: 57  ASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA------- 105

Query: 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
                               N ++L  L L+ + ++   P  +  L+++  L LG N+  
Sbjct: 106 ------------------LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL 145

Query: 512 GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQ 571
            ++S  L  +  L  L ++ + +   + P  + T L+                       
Sbjct: 146 SDLSP-LSNMTGLNYLTVTESKVKD-VTPIANLTDLYS---------------------- 181

Query: 572 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 631
             L    ++I     ++I+ +     L+ L       N++    P  + N+TR+ +L + 
Sbjct: 182 --LSLNYNQI-----EDISPLAS---LTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 632 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685
           +N +T   P   +NL  +  L++  N+++    + + +L  L++ +V  N +S 
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 58/338 (17%), Positives = 115/338 (34%), Gaps = 90/338 (26%)

Query: 7   NGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLG 66
           N +       +  +L    ++   I   +    L          ++  +  L+L      
Sbjct: 98  NKITDISALQNLTNLRELYLNEDNI---SDISPL---------ANLTKMYSLNLGA---- 141

Query: 67  TNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 126
            N + +    L ++  L  L +  + ++   P  +AN+T L  L ++ NQ+      SPL
Sbjct: 142 -NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPL 195

Query: 127 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
             LTS+       N       + P+ N +RL      NN+I  +++   +L     QL  
Sbjct: 196 ASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKIT-DLSPLANLS----QLTW 247

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
           L + +N                     +S I          +++ TKL+ L + ++ ++ 
Sbjct: 248 LEIGTNQ--------------------ISDIN--------AVKDLTKLKMLNVGSNQISD 279

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
                +++  +L  L ++NN +                                 G +  
Sbjct: 280 I--SVLNNLSQLNSLFLNNNQL-------------------------GNEDMEVIGGLTN 312

Query: 307 LQILDLSNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQ 343
           L  L LS NH+T   P   L      +     +N  ++
Sbjct: 313 LTTLFLSQNHITDIRPLASL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 1e-17
 Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 46/261 (17%)

Query: 428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
              L      I+  +          +  L K  +   +   T     S+  L ++  ++ 
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVA 57

Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 547
            SI   ++ L+ L +L L  N +       L  L +L  L +  N +   I    + T L
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTNL 112

Query: 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607
            E                        L      I      +I+ +     L+ +  L+L 
Sbjct: 113 RE------------------------LYLNEDNI-----SDISPLAN---LTKMYSLNLG 140

Query: 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 667
            N  +  + P + N+T +  L ++ + +    P   +NL  + SL L+ N++    P  L
Sbjct: 141 ANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L 195

Query: 668 VELKTLEVFSVAYNNLSGEIP 688
             L +L  F+   N ++   P
Sbjct: 196 ASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
           L+ L  L+L+ N+ I  I P + NL ++  L +  N +T    S   NL ++  L L+ +
Sbjct: 65  LTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNED 120

Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
            ++   P  L  L  +   ++  N+   ++  
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (372), Expect = 6e-38
 Identities = 85/455 (18%), Positives = 167/455 (36%), Gaps = 66/455 (14%)

Query: 102 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 161
             +       +    +T ++       L  +  L       +   S++ +   + L   N
Sbjct: 21  TALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 74

Query: 162 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 221
             NN++  +IT   +L     +L  + +++N                     ++ I    
Sbjct: 75  FSNNQLT-DITPLKNLT----KLVDILMNNNQ--------------------IADITP-- 107

Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
                 L N T L  L L N+ +      P+ +   L +L++S+N I     +     L 
Sbjct: 108 ------LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLT 156

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
           SL   +      D        N+  L+ LD+S+N ++      LA    NL+ L  +NN 
Sbjct: 157 SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQ 210

Query: 342 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL 401
           +     +    LTNL  L L GN+       +L+  ++L  L L NN +    P  L  L
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 402 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 461
           T+L  + +  N +    P     L +L  L++++N +   +    +  ++  + L  N +
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNI 321

Query: 462 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL 521
                     + + L  L    N+++      +  L+ ++ L  GHN +       L  L
Sbjct: 322 SDI---SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 522 NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 556
            ++  L L++            N ++  +  N + 
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (367), Expect = 3e-37
 Identities = 98/457 (21%), Positives = 162/457 (35%), Gaps = 64/457 (14%)

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
                +     L   ++     +      ++  L      I+    V   + L +L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGV---EYLNNLTQIN 74

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
            S N L    P    N+  L  + ++NN +    P        NL  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITD--I 127

Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
               NLTNL  L+L  N        +LS  +SL+ L   N  +    P  L NLT L+ +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 467
            + +N +         +L +L+ L  ++N IS  +       ++ ++ L+ N L      
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 468 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 527
           GT  + ++L  LDL+ N+++   P  + GL++L+ L LG N +       L  L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 528 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 587
           +L+ N L   I P  +   L                                        
Sbjct: 293 ELNENQLED-ISPISNLKNL--------------------------------TYLTLYFN 319

Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647
           NI+ I     L+ L  L    NK+       + NLT I  L+  HN ++   P   +NL 
Sbjct: 320 NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
            +  L L++        +    +            L 
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 4e-37
 Identities = 88/440 (20%), Positives = 157/440 (35%), Gaps = 66/440 (15%)

Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
              +     +  +   N+   +     D + +L      + ++DG        +  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQI 73

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 370
           + SNN LT   P  L      L  + ++NN +     +   NLTNL  L L  N+     
Sbjct: 74  NFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 430
           P  L   ++L  L L++N++       L  LT LQ +   N   +         L +L+ 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLER 181

Query: 431 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489
           LDIS N +S    S    L +++ +  + N +            ++L  L L+ N+L   
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKDI 236

Query: 490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549
               +  L+ L+ L L +N +       L  L +L  L L  N +   I P    T L  
Sbjct: 237 GT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTN 291

Query: 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 609
              N +                                 +  I     L  L+ L L  N
Sbjct: 292 LELNEN--------------------------------QLEDISPISNLKNLTYLTLYFN 319

Query: 610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 669
            +    P  + +LT++Q L   +N ++    S+ +NL ++  L   +N+++   P  L  
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 670 LKTLEVFSVAYNNLSGEIPE 689
           L  +    +     +     
Sbjct: 374 LTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 8e-35
 Identities = 83/390 (21%), Positives = 142/390 (36%), Gaps = 37/390 (9%)

Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358
            +   +       L   ++T  + +        +  L      ++         L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 418
           +    N+     P  L   + L  + +NNN +    P  L NLT L  + + NN +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 419 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478
           P     L +L  L++S N IS  + +     S++Q+     +   +       N ++L  
Sbjct: 129 P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLK----PLANLTTLER 181

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538
           LD+S N++  S    +  L+ L  LI  +N +       L  L  L  L L+ N L   I
Sbjct: 182 LDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I 236

Query: 539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 598
                 T L +    ++           I               +     I+ I     L
Sbjct: 237 GTLASLTNLTDLDLANN----------QISNLAPLSGLTKLTELKLGANQISNISPLAGL 286

Query: 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
           + L+ L+L+ N+L    P  I NL  +  L L  NN++   P   S+L  ++ L   NNK
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342

Query: 659 LNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
           ++      L  L  +   S  +N +S   P
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (325), Expect = 7e-32
 Identities = 89/426 (20%), Positives = 164/426 (38%), Gaps = 54/426 (12%)

Query: 14  GFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTL 73
           G  +  +L   +    ++   T    L         +++  L  + ++   +        
Sbjct: 63  GVEYLNNLTQINFSNNQL---TDITPL---------KNLTKLVDILMNNNQI------AD 104

Query: 74  DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
              L +L +L  L + +N +    P  + N+T+L  L++SSN ++     S L  LTS++
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---DISALSGLTSLQ 159

Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 193
           +L   N        L+PL N + L+  +  +N++  +I+    L      L +L  ++N 
Sbjct: 160 QLSFGNQ----VTDLKPLANLTTLERLDISSNKVS-DISVLAKLT----NLESLIATNNQ 210

Query: 194 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIH 253
                    L    +L+ + L+  ++  +     L + T L  L L N+ ++     P+ 
Sbjct: 211 ISDITPLGIL---TNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNL--APLS 262

Query: 254 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 313
              +L +L +  N I    P+     L +L     + N L+   P    N+K L  L L 
Sbjct: 263 GLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317

Query: 314 NNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 373
            N+++   P         LQ L   NN +     S   NLTN+ WL    N+     P  
Sbjct: 318 FNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP-- 370

Query: 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 433
           L+  + +  L LN+ +       +  N++    +      L  P         S    DI
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSYTEPDI 428

Query: 434 SDNNIS 439
           + N  S
Sbjct: 429 TWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 8e-20
 Identities = 61/369 (16%), Positives = 128/369 (34%), Gaps = 43/369 (11%)

Query: 15  FPHFKSLEHFDMDFTRIA--------LNTSFIALNTSFLQIIS-ESMPSLKYLSLSYYTL 65
             +  +L   ++    I+         +   ++       +    ++ +L+ L +S    
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS--- 186

Query: 66  GTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125
             N    +   L  L +L+ L   +N +    P  +  +T+L  L ++ NQL        
Sbjct: 187 --NKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK---DIGT 238

Query: 126 LVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 185
           L  LT++ +L L+NN      +L PL   ++L       N+I   I+    L      L 
Sbjct: 239 LASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS-NISPLAGLT----ALT 290

Query: 186 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA 245
            L L+ N          + +  +L Y+ L    ++   P   + + TKL+ LF  N+ ++
Sbjct: 291 NLELNEN---QLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVS 344

Query: 246 GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 305
                 + +   +  L   +N I    P+     L  +     +  A   +  +   N+ 
Sbjct: 345 DV--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 365
               +      L    P  ++    +     ++ N         ++  +    +      
Sbjct: 400 IPNTVKNVTGALI--APATIS-DGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTT 455

Query: 366 FVGEIPQSL 374
           F G + Q L
Sbjct: 456 FSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 7e-17
 Identities = 55/307 (17%), Positives = 104/307 (33%), Gaps = 73/307 (23%)

Query: 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 438
            L    +  ++ + +I      L      ++   ++   +      LD +  L      I
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 439 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
             S+                               ++L  ++ S N+L    P  +  L+
Sbjct: 59  K-SIDG-------------------------VEYLNNLTQINFSNNQLTDITP--LKNLT 90

Query: 499 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 558
           +L  +++ +N +       L  L  L  L L NN +   I P  + T L           
Sbjct: 91  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNL----------- 136

Query: 559 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 618
                                   E ++  I+ I     L+ L  L    N++    P  
Sbjct: 137 ---------------------NRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-- 172

Query: 619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678
           + NLT ++ L++S N ++    S  + L ++ESL  +NN+++   P  L  L  L+  S+
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 679 AYNNLSG 685
             N L  
Sbjct: 229 NGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
           L    ++ +  I  I      L       L   N+T ++    ++L  V +L      + 
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI- 58

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSGEIP 688
            K    +  L  L   + + N L+   P
Sbjct: 59  -KSIDGVEYLNNLTQINFSNNQLTDITP 85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  142 bits (361), Expect = 1e-37
 Identities = 54/376 (14%), Positives = 102/376 (27%), Gaps = 79/376 (21%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS-RNFNLT 354
                    +     D +  H              N Q    +   L+       +    
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQP 81

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
               L+L       + P    + S L+ + ++   L  ++P  +     L+ + +  N L
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPL 139

Query: 415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 474
              +P     L+ L+ L I        LP       +     S                 
Sbjct: 140 RA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDASGE----------HQGLV 183

Query: 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL 534
           +L +L L +  +  S+P  +  L  L  L + ++ L   +   +  L +L+ LDL     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 535 HGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 594
               PP F                                                    
Sbjct: 242 LRNYPPIFGG-------------------------------------------------- 251

Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
               + L  L L     +  +P  I  LT+++ L+L        +PS  + L     + +
Sbjct: 252 ---RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 655 SNNKLNGKIPHQLVEL 670
             +       H+ V  
Sbjct: 309 PPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (314), Expect = 2e-31
 Identities = 50/308 (16%), Positives = 96/308 (31%), Gaps = 41/308 (13%)

Query: 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSL-AGPFRLPIHSHKRLRQLDVSNNNIRGHI 272
             +   N     W   N+   +       +L A    L   +      L++ +  +    
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 273 PVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 332
           P +    L  L         L   +P +      L+ L L+ N L   +P  +A     L
Sbjct: 97  PDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRL 152

Query: 333 QFLALSNNNL---------QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 383
           + L++                     +  L NLQ L+LE       +P S++   +L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 443
            + N+ L   +   + +L +L+ + +         P  F     L+ L + D +   +LP
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 444 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL 503
              H                          + L  LDL        +P  +  L     +
Sbjct: 271 LDIH------------------------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 504 ILGHNNLE 511
           ++  +   
Sbjct: 307 LVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 1e-29
 Identities = 57/303 (18%), Positives = 97/303 (32%), Gaps = 21/303 (6%)

Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 311
            H       L    +         +       Y  + +             N    QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 312 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 371
            +   L                 L L +  L      + F L++LQ + ++    + E+P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHLE--------GPIPVEF 422
            ++ + + LE L L  N L   +P  + +L RL+ + I     L              E 
Sbjct: 121 DTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
             L +LQ L +    I  SLP+    L ++K + +  + L          +   L  LDL
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDL 236

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 541
                  + P    G + L  LIL   +    + + +  L QL+ LDL        +P  
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 542 FDN 544
              
Sbjct: 297 IAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (297), Expect = 3e-29
 Identities = 48/339 (14%), Positives = 93/339 (27%), Gaps = 54/339 (15%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           + +  + L  +G+  +      LS+         N      +      N    Q      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 412 NHLEG-PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
             L+     +E         L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530
           F  S L  + +    L   +PD +   + L  L L  N L   +   +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 590
                  +P    +T     +    +          +E     +      I         
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQS-----LRLEWTG--IRSLPASIAN------- 204

Query: 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
                  L  L  L +  + L   + P I +L +++ L+L       + P  F     ++
Sbjct: 205 -------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 651 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
            L L +      +P  +  L  LE   +        +P 
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 2e-27
 Identities = 48/328 (14%), Positives = 88/328 (26%), Gaps = 62/328 (18%)

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
           +G         S  E LY   ++ L      L    R         H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQV---HLSKNMLHGQLKR--GTFFNCSSLVTLDL 481
           + QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 541
               L   +PD +   + L  L L  N L   +   +  LN+L+ L +        +P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 542 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 601
             +T     +                                              L  L
Sbjct: 170 LASTDASGEHQG--------------------------------------------LVNL 185

Query: 602 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661
             L L    +   +P  I NL  +++L + ++ L+ ++     +L  +E LDL       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 662 KIPHQLVELKTLEVFSVAYNNLSGEIPE 689
             P        L+   +   +    +P 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 1e-24
 Identities = 58/338 (17%), Positives = 106/338 (31%), Gaps = 55/338 (16%)

Query: 79  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
            L   Q  Y A  +      W  AN  + +I   +   L  +              L L 
Sbjct: 31  VLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELR 89

Query: 139 NNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 197
           +      P   +  F  S L+    +   +  E+ ++   +     L TL+L+ N     
Sbjct: 90  SVPLPQFP---DQAFRLSHLQHMTIDAAGLM-ELPDT---MQQFAGLETLTLARNPLR-- 140

Query: 198 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 257
             P  +   + L  + +       E P  L   +   E   LVN                
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN---------------- 184

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           L+ L +    IR                          S+P+S  N++ L+ L + N+ L
Sbjct: 185 LQSLRLEWTGIR--------------------------SLPASIANLQNLKSLKIRNSPL 218

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 377
           +  +   +      L+ L L       +          L+ L L+    +  +P  + + 
Sbjct: 219 S-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 415
           + LE L L     L ++P  +  L     I++P +   
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 49/297 (16%), Positives = 86/297 (28%), Gaps = 67/297 (22%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           + P    L L                   L HLQ + I +  L   LP  M     L  L
Sbjct: 79  TQPGRVALELRS-----VPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
            ++ N L  ++ +S +  L  + EL +                   L        E+   
Sbjct: 133 TLARNPLR-ALPAS-IASLNRLRELSIRAC--------------PELT-------ELPEP 169

Query: 171 ITESHSLIAPKF--QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL 228
           +  + +    +    L +L L                           I+     P   +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWT-----------------------GIR---SLPAS-I 202

Query: 229 ENNTKLETLFLVNDSLAGPFRLP--IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 286
            N   L++L + N  L+    L   IH   +L +LD+       + P   G     L   
Sbjct: 203 ANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRL 258

Query: 287 N-NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
                + L  ++P     +  L+ LDL        +P  +A        + +  +  
Sbjct: 259 ILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQ 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  140 bits (354), Expect = 1e-35
 Identities = 68/362 (18%), Positives = 127/362 (35%), Gaps = 51/362 (14%)

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF 366
           + +          +PE +       + L L  N ++  L    F +  +L+ L+L  N  
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
               P + +   +L  L L +N L          L+ L  + +  N +   +   F  L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
           +L+ L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC-FDN 544
           +N         L +L  L + H      ++        L  L +++ NL   +P     +
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRH 246

Query: 545 ----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599
                 L+ SY+  S+                                          L 
Sbjct: 247 LVYLRFLNLSYNPISTIEGSML----------------------------------HELL 272

Query: 600 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
            L  + L   + +  + P     L  ++ LN+S N LT    S F ++ ++E+L L +N 
Sbjct: 273 RLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 659 LN 660
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (335), Expect = 4e-33
 Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 31/302 (10%)

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 318
           R +          +P  I      L +  N +  L+      F +   L+ L+L+ N ++
Sbjct: 14  RAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVS 69

Query: 319 GEIPEHLAVGCVNLQFLALSNNNLQ---GHLF-----------SRNF----------NLT 354
             +         NL+ L L +N L+     +F           S N           +L 
Sbjct: 70  -AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
           NL+ L++  N  V    ++ S  +SLE L L   +L       L +L  L  + + + ++
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 415 EGPIPVEFCQLDSLQILDISDNNISGSL-PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 473
                  F +L  L++L+IS      ++ P+C + L++  + ++   L   +      + 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL 247

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
             L  L+LSYN ++      +  L +L  + L    L          LN L++L++S N 
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 534 LH 535
           L 
Sbjct: 308 LT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (331), Expect = 1e-32
 Identities = 65/311 (20%), Positives = 119/311 (38%), Gaps = 19/311 (6%)

Query: 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDV 263
           +   +DL   ++          +   LE L L  + +     G F    ++   LR L +
Sbjct: 33  ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGL 87

Query: 264 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE 323
            +N ++  IP+ +   L +L   + S N +   +   F ++  L+ L++ +N L   I  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 324 HLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 380
               G  +L+ L L   NL        S   +L  L  L+L           S  +   L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
           + L +++   L  +         L  + + + +L     +    L  L+ L++S N IS 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 441 SLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499
              S  H L  ++++ L    L   ++   F   + L  L++S N+L          +  
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 500 LSHLILGHNNL 510
           L  LIL  N L
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 65/365 (17%), Positives = 126/365 (34%), Gaps = 70/365 (19%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
           T  R+LD+  N++  +++         +EEL L+ N     +      N   L+     +
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
           N +K  I     +      L  L +S N                     +  +       
Sbjct: 90  NRLK-LIPL--GVFTGLSNLTKLDISEN--------------------KIVIL------L 120

Query: 225 NWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
           +++ ++   L++L + ++ L       F  L       L QL +   N+   IP      
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-----SLEQLTLEKCNLT-SIP------ 168

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
                               +  ++  L +L L + ++   I ++       L+ L +S+
Sbjct: 169 ------------------TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISH 209

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKIPRWL 398
                 +        NL  L +        +P  ++     L  L L+ N +       L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLS 457
             L RLQ I +    L    P  F  L+ L++L++S N ++    S FH + +++ + L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 458 KNMLH 462
            N L 
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 66/383 (17%), Positives = 119/383 (31%), Gaps = 97/383 (25%)

Query: 9   VVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTN 68
            +    F  F  LE  +++   +    S +     F      ++ +L+ L L    L   
Sbjct: 46  TLNQDEFASFPHLEELELNENIV----SAVEPGA-F-----NNLFNLRTLGLRSNRLKLI 95

Query: 69  SSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
             G        L +L +L I+ N +   L +   ++ +L+ L+V  N L   IS      
Sbjct: 96  PLGVFT----GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150

Query: 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 188
           L S+E+L L        I  E L +   L +    +  I A                   
Sbjct: 151 LNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINA------------------- 190

Query: 189 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 248
                    I        + L+ +++SH           L                    
Sbjct: 191 ---------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN---------------- 225

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
                    L  L +++ N+   +P                          +  ++ +L+
Sbjct: 226 ---------LTSLSITHCNLT-AVP------------------------YLAVRHLVYLR 251

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 367
            L+LS N ++  I   +    + LQ + L    L   +    F  L  L+ L + GN+  
Sbjct: 252 FLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 368 GEIPQSLSKCSSLEGLYLNNNSL 390
                      +LE L L++N L
Sbjct: 310 TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 37/266 (13%)

Query: 426 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
              + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN- 544
           ++   P   + L  L  L L  N L+         L+ L  LD+S N +   +   F + 
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
             L                          LE  ++++   + +  +       L+ L  L
Sbjct: 128 YNLKS------------------------LEVGDNDLVYISHRAFSG------LNSLEQL 157

Query: 605 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
            L     +  IP +   +L  +  L L H N+      +F  L  ++ L++S+      +
Sbjct: 158 TLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 664 PHQLVELKTLEVFSVAYNNLSGEIPE 689
               +    L   S+ + NL+  +P 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPY 241

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (346), Expect = 4e-35
 Identities = 75/406 (18%), Positives = 140/406 (34%), Gaps = 78/406 (19%)

Query: 283 LYVFNNSMNALDGSIPSSF--GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 340
              ++  ++     +   F    +   +I+   N+ +  ++P  L      ++ L L++ 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 79

Query: 341 NLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
            ++  + +  F     +Q L +  N      P        L  L L  N L         
Sbjct: 80  QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 400 NLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458
           N  +L  + M NN+LE  I  + F    SLQ L +S N ++    S    L     ++S 
Sbjct: 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSY 195

Query: 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQL 518
           N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  + +  L
Sbjct: 196 NLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-L 244

Query: 519 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN 578
                L  +DLS N L   +   F                                    
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVK---------------------------------- 270

Query: 579 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS 638
                              +  L  L +S N+ +  +      +  ++ L+LSHN+L   
Sbjct: 271 -------------------MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 639 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           +         +E+L L +N +   +        TL+  ++++N+  
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 1e-34
 Identities = 78/436 (17%), Positives = 148/436 (33%), Gaps = 103/436 (23%)

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
           L+ +     + +   +    F     +    + +   N+ +R  +P              
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP-------------- 61

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN---LQG 344
                      +   + + +++L+L++  +  EI  +       +Q L +  N    L  
Sbjct: 62  ----------AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 345 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
           H+F    N+  L  L LE N               L  L ++NN+L           T L
Sbjct: 111 HVFQ---NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464
           Q + + +N L     V+   + SL   ++S N +S +L     P++++++  S N ++  
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAI---PIAVEELDASHNSIN-V 219

Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 524
           ++         L  L L +N L  +   W+     L  + L +N LE  +     ++ +L
Sbjct: 220 VRGPVN---VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 525 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 584
           + L +SNN L   +                                              
Sbjct: 275 ERLYISNNRLVA-LNLYGQP---------------------------------------- 293

Query: 585 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644
                        +  L  LDLS N  + H+        R++ L L HN++     ST  
Sbjct: 294 -------------IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 645 NLKHVESLDLSNNKLN 660
            LK+   L LS+N  +
Sbjct: 340 TLKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 1e-30
 Identities = 79/415 (19%), Positives = 146/415 (35%), Gaps = 50/415 (12%)

Query: 67  TNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 126
                 +D  L       +++I          +    + + +I+   ++ +   + ++ L
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 127 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
                +E L L++   +  I          ++      N I+                  
Sbjct: 66  DSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------- 107

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
                      + P    +   L  + L    ++   P  +  N  KL TL + N++L  
Sbjct: 108 -----------LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
                  +   L+ L +S+N +  H+ +    ++PSL+  N S N L     S+      
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           ++ LD S+N +   +   +    V L  L L +NNL     +   N   L  + L  N  
Sbjct: 207 VEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 260

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
              +     K   LE LY++NN  L  +  +   +  L+ + + +NHL   +     Q D
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFD 318

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
            L+ L +  N+I     S  H L  K + LS N       R  F N +     D 
Sbjct: 319 RLENLYLDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 9e-29
 Identities = 64/338 (18%), Positives = 120/338 (35%), Gaps = 45/338 (13%)

Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
           S          + ++               ++ + +   N+++       L +  +++ +
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLK 466
            + +  +E      F    ++Q L +  N I    P  F  +  +  + L +N L   L 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 467 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQL 526
           RG F N   L TL +S N L     D     + L +L L  N L     V L  +  L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFH 190

Query: 527 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 586
            ++S N L   +        L  S+++                                 
Sbjct: 191 ANVSYNLLST-LAIPIAVEELDASHNS--------------------------------- 216

Query: 587 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 646
             I  + +G V   L+ L L  N L       + N   +  ++LS+N L   +   F  +
Sbjct: 217 --INVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 647 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           + +E L +SNN+L   +      + TL+V  +++N+L 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (252), Expect = 6e-23
 Identities = 72/365 (19%), Positives = 129/365 (35%), Gaps = 79/365 (21%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           S   ++ L+L+   +    +            +Q+LY+  N +R   P    N+  L +L
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAY----AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
            +  N L+ S+      +   +  L +SNN                L+    +       
Sbjct: 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNN---------------NLERIEDD------- 159

Query: 171 ITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 230
                        L  L LSSN                     L+H+ ++   P+     
Sbjct: 160 ------TFQATTSLQNLQLSSN--------------------RLTHVDLSL-IPS----- 187

Query: 231 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 290
              L    +  + L+      +     + +LD S+N+I   +    G V   L +     
Sbjct: 188 ---LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQH 235

Query: 291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN 350
           N L  +  +   N   L  +DLS N L  +I  H  V    L+ L +SNN L   L    
Sbjct: 236 NNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 351 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410
             +  L+ L L  N  +  + ++  +   LE LYL++NS +  +   L     L+ + + 
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLS 347

Query: 411 NNHLE 415
           +N  +
Sbjct: 348 HNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 548
            I   +        + +     +     +   LN  +++   N+ +              
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-------------- 57

Query: 549 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 608
                   P    + F  +E     L   + +I E  T   AY         +  L +  
Sbjct: 58  -----RKLPAALLDSFRQVE----LLNLNDLQIEEIDTYAFAY------AHTIQKLYMGF 102

Query: 609 NKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 667
           N  I ++PP +  N+  +  L L  N+L+      F N   + +L +SNN L        
Sbjct: 103 NA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 668 VELKTLEVFSVAYNNLS 684
               +L+   ++ N L+
Sbjct: 162 QATTSLQNLQLSSNRLT 178

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (330), Expect = 1e-33
 Identities = 59/296 (19%), Positives = 109/296 (36%), Gaps = 29/296 (9%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           LR +  S+  +   +P  +      L + NN +  +       F N+K L  L L NN +
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKI 88

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 374
           + +I        V L+ L LS N L+     +         LQ L++  N          
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVF 141

Query: 375 SKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 432
           +  + +  + L  N L            + +L YI + + ++   IP       SL  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198

Query: 433 ISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 491
           +  N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N+L   +P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 492 DWVDGLSQLSHLILGHNNLEG------EVSVQLCELNQLQLLDLSNNNL-HGPIPP 540
             +     +  + L +NN+               +      + L +N + +  I P
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (299), Expect = 2e-29
 Identities = 71/370 (19%), Positives = 119/370 (32%), Gaps = 88/370 (23%)

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 364
            L+++  S+  L  ++P+ L     +   L L NN +   +   +F NL NL  L L  N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ 424
           +     P + +    LE LYL+ N L  ++P  +                          
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQL-KELPEKM-------------------------- 119

Query: 425 LDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH-GQLKRGTFFNCSSLVTLDLS 482
             +LQ L + +N I+    S F+ L  +  V L  N L    ++ G F     L  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 483 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-C 541
              +  +IP  +     L+ L L  N +    +  L  LN L  L LS N++   +    
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS 235

Query: 542 FDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 597
             N      LH + +                                             
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGL----------------------------------AD 261

Query: 598 LSLLSGLDLSCNKLIGHIPPQ-------IGNLTRIQTLNLSHNNLTGSI--PSTFSNLKH 648
              +  + L  N  I  I                   ++L  N +      PSTF  +  
Sbjct: 262 HKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 649 VESLDLSNNK 658
             ++ L N K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (290), Expect = 3e-28
 Identities = 53/267 (19%), Positives = 95/267 (35%), Gaps = 27/267 (10%)

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDL 312
           K L  L + NN I   I       L  L   Y+  N +  L   +P +      LQ L +
Sbjct: 76  KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT------LQELRV 128

Query: 313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-F-NLTNLQWLQLEGNRFVGEI 370
             N +T ++ + +  G   +  + L  N L+        F  +  L ++++        I
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186

Query: 371 PQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 429
           PQ L    SL  L+L+ N +  K+    L  L  L  + +  N +             L+
Sbjct: 187 PQGL--PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 430 ILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH-----GQLKRGTFFNCSSLVTLDLSY 483
            L +++N +   +P        I+ V+L  N +           G     +S   + L  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 484 NRLNGSI--PDWVDGLSQLSHLILGHN 508
           N +      P     +   + + LG+ 
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (267), Expect = 3e-25
 Identities = 52/240 (21%), Positives = 99/240 (41%), Gaps = 19/240 (7%)

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
            +L +L +S N ++  +P K+   L  L V  N +  +     S F  +  + +++L  N
Sbjct: 100 VKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTN 155

Query: 316 HLT-GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QS 373
            L    I      G   L ++ +++ N+   +        +L  L L+GN+   ++   S
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI-TKVDAAS 211

Query: 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 433
           L   ++L  L L+ NS+       L N   L+ + + NN L   +P        +Q++ +
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270

Query: 434 SDNNISGSLPSCFHPL-------SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 485
            +NNIS    + F P        S   V L  N + + +++  TF        + L   +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 58/317 (18%), Positives = 112/317 (35%), Gaps = 48/317 (15%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
               +LD+ +N++T  I      +L ++  L+L NN     IS        +L+      
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 165 NEIKAEITESHSLIAPKFQ-LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
           N++K        L     + L  L +  N     +        + +  V+L     N   
Sbjct: 110 NQLK-------ELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGT---N--- 155

Query: 224 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 283
                     L++  + N +  G         K+L  + +++ NI   IP  +   L  L
Sbjct: 156 ---------PLKSSGIENGAFQGM--------KKLSYIRIADTNIT-TIPQGLPPSLTEL 197

Query: 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
           ++  N +  +D    +S   +  L  L LS N ++  +         +L+ L L+NN L 
Sbjct: 198 HLDGNKITKVD---AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV 253

Query: 344 GHLFSRNFNLTNLQWLQLEGNRF------VGEIPQSLSKCSSLEGLYLNNNSL-LGKIPR 396
             +     +   +Q + L  N            P   +K +S  G+ L +N +   +I  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 397 -WLGNLTRLQYIIMPNN 412
                +     + + N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 58/266 (21%), Positives = 97/266 (36%), Gaps = 50/266 (18%)

Query: 427 SLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
              +LD+ +N I+      F  L  +  + L  N +  ++  G F     L  L LS N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH-GPIPP-CFD 543
           L   +P+       L  L +  N +          LNQ+ +++L  N L    I    F 
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 544 N----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599
                + +  + +N                                   I  I    +  
Sbjct: 169 GMKKLSYIRIADTN-----------------------------------ITTI-PQGLPP 192

Query: 600 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
            L+ L L  NK I  +       L  +  L LS N+++     + +N  H+  L L+NNK
Sbjct: 193 SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 659 LNGKIPHQLVELKTLEVFSVAYNNLS 684
           L  K+P  L + K ++V  +  NN+S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 53/364 (14%), Positives = 113/364 (31%), Gaps = 108/364 (29%)

Query: 10  VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNS 69
           ++   F + K+L    +   +I    S I+    F       +  L+ L LS      N 
Sbjct: 67  IKDGDFKNLKNLHTLILINNKI----SKISPGA-F-----APLVKLERLYLSK-----NQ 111

Query: 70  SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGS-ISSSPLVH 128
              L + +     LQEL +  N++          +  + ++++ +N L  S I +     
Sbjct: 112 LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 188
           +  +  + +++      I+  P      L   + + N+I  ++  +   +     L  L 
Sbjct: 170 MKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKIT-KVDAAS--LKGLNNLAKLG 222

Query: 189 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF 248
           LS N                     +S +  NG   N                       
Sbjct: 223 LSFN--------------------SISAV-DNGSLANT---------------------- 239

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
                    LR+L ++NN +                            +P    + K++Q
Sbjct: 240 -------PHLRELHLNNNKLV--------------------------KVPGGLADHKYIQ 266

Query: 309 ILDLSNNHLT-----GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN--FNLTNLQWLQL 361
           ++ L NN+++        P        +   ++L +N +Q      +    +     +QL
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

Query: 362 EGNR 365
              +
Sbjct: 327 GNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
           L  +  S   L   +P  +        L+L +N +T      F NLK++ +L L NNK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
              P     L  LE   ++ N L  E+PE
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (328), Expect = 2e-33
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 18/258 (6%)

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
                +   + ++L  ++ S   +   ++ LDLS N L+ +I          L+ L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
           N L         +L+ L+ L L  N       Q L    S+E L+  NN++  ++     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS--CS 117

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-SLPSCFHPL-SIKQVHLS 457
                + I + NN +     ++      +Q LD+  N I   +         +++ ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 517
            N ++  +K       + L TLDLS N+L   +       + ++ + L +N L   +   
Sbjct: 178 YNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 518 LCELNQLQLLDLSNNNLH 535
           L     L+  DL  N  H
Sbjct: 233 LRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (304), Expect = 3e-30
 Identities = 57/368 (15%), Positives = 113/368 (30%), Gaps = 76/368 (20%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           N    +  ++  +     +        +++ L L+ N L       L   T+L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 471
           N L   +      L +L+ LD+++N +                                 
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-----------------------------ELL 96

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
              S+ TL  + N ++  +           ++ L +N +     +     +++Q LDL  
Sbjct: 97  VGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 532 NNLHG-PIPPCFDN-TTLHESY--SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 587
           N +          +  TL       N                                  
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN---------------------------------- 179

Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647
            I  +    V + L  LDLS NKL   + P+  +   +  ++L +N L   I       +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTF 707
           ++E  DL  N  +     +    K   V +VA   +  ++     +  T     + G   
Sbjct: 238 NLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYC 295

Query: 708 LCGLPLPI 715
              LP P 
Sbjct: 296 CEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 7e-25
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 25/289 (8%)

Query: 153 NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 212
           N +R KI    ++ +K  +     L    + +  L LS N     I    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALAS---LRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELL 63

Query: 213 DLSH--IKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG 270
           +LS   +    +      E+ + L TL L N+ +       +     +  L  +NNNI  
Sbjct: 64  NLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112

Query: 271 HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330
            +    G    ++Y+ NN +  L        G    +Q LDL  N +       LA    
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
            L+ L L  N +             L+ L L  N+    +       + +  + L NN  
Sbjct: 170 TLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK- 225

Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
           L  I + L     L++  +  N       +      + ++  ++   + 
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 60/348 (17%), Positives = 118/348 (33%), Gaps = 55/348 (15%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANM 104
           +  I ++    K   ++  +L    +        S  +++EL ++ N L       +A  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQ----SAWNVKELDLSGNPLSQISAADLAPF 57

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
           T L +L++SSN L     +  L  L+++  L L+NNY Q    L        ++  +A N
Sbjct: 58  TKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ---ELLVG---PSIETLHAAN 108

Query: 165 NEIKAEITESHSLIAPKFQ-LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
           N I         +   + Q    + L++N                     ++ +      
Sbjct: 109 NNIS-------RVSCSRGQGKKNIYLANN--------------------KITML------ 135

Query: 224 PNWLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 282
            +      ++++ L L  + +    F     S   L  L++  N I   +  ++      
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAK 192

Query: 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
           L   + S N L   +   F +   +  + L NN L   I + L     NL+   L  N  
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGF 249

Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
                 R+F   N +   +          Q+  +C+     +      
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 69/270 (25%)

Query: 422 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
               +  +I  ++D+++  +L S                              ++  LDL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAW------------------------NVKELDL 41

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 541
           S N L+      +   ++L  L L  N L    ++ L  L+ L+ LDL+NN +   +   
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-LLVG 98

Query: 542 FDNTTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
               TLH + +N S     +                                        
Sbjct: 99  PSIETLHAANNNISRVSCSRG-------------------------------------QG 121

Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 659
              + L+ NK+        G  +R+Q L+L  N +   +     ++   +E L+L  N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
              +    V    L+   ++ N L+  +  
Sbjct: 182 Y-DVKG-QVVFAKLKTLDLSSNKLA-FMGP 208

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 41/222 (18%)

Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529
             N +      ++ + L  ++         +  L L  N L    +  L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 589
           S+N L+         +TL                          L+  N+ + E      
Sbjct: 66  SSNVLYE-TLDLESLSTLRT------------------------LDLNNNYVQELLV--- 97

Query: 590 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 649
                      +  L  + N  I  +          + + L++N +T            V
Sbjct: 98  --------GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 650 ESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEIPEW 690
           + LDL  N+++            TLE  ++ YN +  ++   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 548
           +I +     ++     +  ++L+  ++        ++ LDLS N L           T  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 549 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 608
                                          E+   ++  +      + LS L  LDL+ 
Sbjct: 59  -----------------------------KLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 609 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 668
           N +      ++     I+TL+ ++NN++    S     K+   + L+NNK+         
Sbjct: 90  NYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEG 141

Query: 669 ELKTLEVFSVAYNNLS 684
               ++   +  N + 
Sbjct: 142 CRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 615 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 674
           I     N  R +   ++ ++L  ++ S   +  +V+ LDLS N L+      L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 675 VFSVAYNNLSGEIPE 689
           + +++ N L  E  +
Sbjct: 62  LLNLSSNVLY-ETLD 75

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (334), Expect = 4e-33
 Identities = 87/433 (20%), Positives = 126/433 (29%), Gaps = 92/433 (21%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNH 316
           +  +D+S N+I   +       L  L             I + +F  +  L IL L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSL 374
              ++      G  NL+ L L+  NL G + S NF   LT+L+ L L  N      P S 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 375 -SKCSSLEGLYLNNNSL----------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
                    L L  N +                 L  L+ +    M    L         
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 424 QLDSLQILDISDNNISGSLPSCFHPL--------------SIKQVHLSKNMLHGQLKRGT 469
           +  S+  LD+S N    S+   F                                    T
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK-DPDNFT 268

Query: 470 FFN--CSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQL 526
           F     S + T DLS +++  ++   V    + L  L L  N +          L  L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 527 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 586
           L+LS N L       F+N                                          
Sbjct: 328 LNLSQNFLGSIDSRMFEN------------------------------------------ 345

Query: 587 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFS 644
                      L  L  LDLS N  I  +  Q    L  ++ L L  N L  S+P   F 
Sbjct: 346 -----------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

Query: 645 NLKHVESLDLSNN 657
            L  ++ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (322), Expect = 1e-31
 Identities = 84/397 (21%), Positives = 139/397 (35%), Gaps = 66/397 (16%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLT 354
            +P+       +  +DLS N +  E+ E       +LQFL +        + +  F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYIIMPNN 412
           +L  L+L+ N+F+     + +  ++LE L L   +L G +    +   LT L+ +++ +N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 413 HLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQV---HLSKNMLH------ 462
           +++   P   F  +    +LD++ N +             K      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 463 -GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL 521
            G  K G  F  +S+ TLDLS N    S+          + +     +    +       
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 522 NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI 581
           N     + +   L           T   S S            F++             +
Sbjct: 260 NFKDPDNFTFKGLEAS-----GVKTCDLSKSK----------IFALLKS----------V 294

Query: 582 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIP 640
           F                + L  L L+ N+ I  I       LT +  LNLS N L     
Sbjct: 295 FSH-------------FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 641 STFSNLKHVESLDLSNNKLNGKIPHQ----LVELKTL 673
             F NL  +E LDLS N +   +  Q    L  LK L
Sbjct: 341 RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (280), Expect = 4e-26
 Identities = 71/436 (16%), Positives = 140/436 (32%), Gaps = 64/436 (14%)

Query: 81  VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
            H+  + ++ N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 141 YFQIPISLEP-LF-NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 198
            F     LE   F   + L++       +   +   +        L  L L  N      
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDN------ 139

Query: 199 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL 258
                         ++  I+    F N       +   L L  + +     +        
Sbjct: 140 --------------NIKKIQPASFFLNM-----RRFHVLDLTFNKVK---SICEEDLLNF 177

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 318
           +    +               L S+ + + +   L      +      +  LDLS N   
Sbjct: 178 QGKHFTLLR------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 319 GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS 378
             + +         +  +L  +N      S         +   +   F G       + S
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT----NFKDPDNFTFKG------LEAS 275

Query: 379 SLEGLYLNNNSLLGKIPRWL-GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 437
            ++   L+ +  +  + + +  + T L+ + +  N +       F  L  L  L++S N 
Sbjct: 276 GVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 438 ISGSLPSC-FHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV- 494
           +  S+ S  F  L  ++ + LS N +   L   +F    +L  L L  N+L  S+PD + 
Sbjct: 335 LG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIF 391

Query: 495 DGLSQLSHLILGHNNL 510
           D L+ L  + L  N  
Sbjct: 392 DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (268), Expect = 1e-24
 Identities = 81/399 (20%), Positives = 144/399 (36%), Gaps = 44/399 (11%)

Query: 34  NTSFIALNTSFLQIISE----SMPSLKYLSLSYYTLGTN-SSGTLDQGLCSLVHLQELYI 88
           + +++ L+ + +  ++E     +  L++L +   T G    + T       L  L  L +
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG----LSSLIILKL 86

Query: 89  ASNDLRGSLPWCMANMTSLRILDVSSNQLTGS-ISSSPLVHLTSIEELMLSNNYFQIP-I 146
             N            + +L +L ++   L G+ +S +    LTS+E L+L +N   I  I
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN--NIKKI 144

Query: 147 SLEPLFNY-SRLKIFNAENNEIKAE-------ITESHSLIAPKFQLNTLSLSSNYGDGFI 198
                F    R  + +   N++K+            H  +     +    ++  +     
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 199 FPKFLYHQHDLEYVDLSHIKMNGEFPNWL--LENNTKLETLFLVNDSLAGPFRLPIHSHK 256
                     +  +DLS                  TK+++L L N            S  
Sbjct: 205 CGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN------SYNMGSSFG 257

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
                D  N   +G         + +  +  + + AL     S F +   L+ L L+ N 
Sbjct: 258 HTNFKDPDNFTFKGLEASG----VKTCDLSKSKIFALL---KSVFSHFTDLEQLTLAQNE 310

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSL 374
           +  +I ++   G  +L  L LS N L   + SR F NL  L+ L L  N     +  QS 
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSF 367

Query: 375 SKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNN 412
               +L+ L L+ N  L  +P      LT LQ I +  N
Sbjct: 368 LGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 72/364 (19%), Positives = 109/364 (29%), Gaps = 93/364 (25%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLD 74
           F    SLE   +    I      I   + F      +M     L L++  + +     L 
Sbjct: 125 FKPLTSLEMLVLRDNNI----KKIQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 75  QGLCSLVHLQELYIASNDL----RGSLPWCMA----NMTSLRILDVSSNQLTGSISSSPL 126
                  H   L ++S  L       L W         TS+  LD+S N    S++    
Sbjct: 176 N--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 127 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
             +   +   L  +      S     N+                             + T
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDP--------------DNFTFKGLEASGVKT 279

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
             LS +                     +  +         +  + T LE L L       
Sbjct: 280 CDLSKS--------------------KIFAL------LKSVFSHFTDLEQLTL------- 306

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMK 305
                            + N I   I       L  L   N S N L GSI S  F N+ 
Sbjct: 307 -----------------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLD 347

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNLQWLQLE 362
            L++LDLS NH+   + +   +G  NL+ LAL  N L+     +F     LT+LQ + L 
Sbjct: 348 KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLH 403

Query: 363 GNRF 366
            N +
Sbjct: 404 TNPW 407

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (334), Expect = 4e-33
 Identities = 93/451 (20%), Positives = 166/451 (36%), Gaps = 79/451 (17%)

Query: 254 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN---------- 303
           S+  L++    ++N+   +PV+  + + S   + N+ +  + + P   G           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 304 ---MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360
               +    L+L+N  L+  +PE       +L+ L  S N+L   L     +L +L    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 361 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
                     P        LE L ++NN L  K+P  L N + L+ I + NN L+  +P 
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 421 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
                 SL+ +   +N +   LP   +   +  ++   N L     +       SL ++ 
Sbjct: 171 L---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL-----KKLPDLPLSLESIV 221

Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 540
              N L       +  L  L+ +   +N L             L+ L++ +N L   +P 
Sbjct: 222 AGNNIL--EELPELQNLPFLTTIYADNNLL----KTLPDLPPSLEALNVRDNYLTD-LPE 274

Query: 541 CFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599
              + T L  S +  S           +  +  +L   ++EI                  
Sbjct: 275 LPQSLTFLDVSENIFSG-------LSELPPNLYYLNASSNEIRSLCDL----------PP 317

Query: 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
            L  L++S NKLI  +P     L   + L  S N+L   +P    NLK    L +  N L
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYNPL 369

Query: 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690
             + P     ++ L +     N+   E+PE 
Sbjct: 370 R-EFPDIPESVEDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 1e-30
 Identities = 96/448 (21%), Positives = 152/448 (33%), Gaps = 82/448 (18%)

Query: 231 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 290
           + +   L L N  L+    LP      L  L  S N++   +P      L SL V NN++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 291 NALDGSIPS---------------SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 335
            AL    P                   N  FL+I+D+ NN L  ++P+       +L+F+
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 336 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP 395
           A  NN L+        NL  L  +  + N    ++P       SLE +   NN L  +  
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNIL--EEL 230

Query: 396 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQV 454
             L NL  L  I   NN L+  +P       SL+ L++ DN ++  LP     L  +   
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
               + L             +L  L+ S N +  S+ D       L  L + +N L    
Sbjct: 286 ENIFSGLSELPP--------NLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI--- 330

Query: 515 SVQL-CELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQG 572
             +L     +L+ L  S N+L   +P    N   LH  Y+           F  I     
Sbjct: 331 --ELPALPPRLERLIASFNHLAE-VPELPQNLKQLHVEYN-------PLREFPDIPESVE 380

Query: 573 FLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 632
            L   +H                     L  L +  N L    P    ++     L ++ 
Sbjct: 381 DLRMNSHLAEVPEL-----------PQNLKQLHVETNPLR-EFPDIPESVED---LRMNS 425

Query: 633 NNLTGSIPSTFSNLKHVESLDLSNNKLN 660
             +             +E     ++  +
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  123 bits (310), Expect = 5e-30
 Identities = 99/524 (18%), Positives = 178/524 (33%), Gaps = 103/524 (19%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALN---TSFLQIISESMPSLKYLSLSYYTLGTNSSG 71
             + KS   +   ++    N           +  ++          L L+          
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN-----LGLS 84

Query: 72  TLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 131
           +L +      HL+ L  + N L   LP    ++ SL + + +   L+             
Sbjct: 85  SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------- 132

Query: 132 IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 191
           +E L +SNN  +    L  L N S LKI + +NN +K                       
Sbjct: 133 LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKK---------------------- 167

Query: 192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 251
                   P        LE++   + ++  E P   L+N   L  ++  N+SL     LP
Sbjct: 168 -------LPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLP 214

Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 311
           +     L  +   NN +      ++ + LP L       N L  ++P    +   L+ L+
Sbjct: 215 LS----LESIVAGNNIL--EELPELQN-LPFLTTIYADNNLL-KTLPDLPPS---LEALN 263

Query: 312 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 371
           + +N+LT ++PE       +L FL +S N     L        NL +L    N     + 
Sbjct: 264 VRDNYLT-DLPELPQ----SLTFLDVSENIFS-GLSEL---PPNLYYLNASSNEIR-SLC 313

Query: 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 431
                  SLE L ++NN L+ ++P     L RL   I   NHL   +P       +L+ L
Sbjct: 314 DLPP---SLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPEL---PQNLKQL 362

Query: 432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 491
            +  N +    P     +   +++     +             +L  L +  N L    P
Sbjct: 363 HVEYNPLR-EFPDIPESVEDLRMNSHLAEV--------PELPQNLKQLHVETNPLR-EFP 412

Query: 492 DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
           D       +  L +    +           ++L+     +++ H
Sbjct: 413 DI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 65/392 (16%), Positives = 124/392 (31%), Gaps = 98/392 (25%)

Query: 298 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 357
           P +  N  FLQ     +++LT E+P        +      + +  + +    N     + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 358 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 417
             +L                     L LNN  L   +P    +L  L   +   N L   
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-E 105

Query: 418 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477
           +P     L SL + + +   +S   P                                L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------------------------------LE 134

Query: 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 537
            L +S N+L   +P+ +   S L  + + +N+L+ ++         L+ +   NN L   
Sbjct: 135 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEE- 187

Query: 538 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 597
           +P   +   L                          +   N+ + +             +
Sbjct: 188 LPELQNLPFLTA------------------------IYADNNSLKKLP----------DL 213

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
              L  +    N L     P++ NL  + T+   +N L  ++P    +L+   +L++ +N
Sbjct: 214 PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDN 267

Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
            L   +P     L  L+V    ++ LS   P 
Sbjct: 268 YLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 614 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 673
            I P+  + T +Q      +NLT  +P    N+K       + ++     P    E + +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 674 EV 675
            V
Sbjct: 61  AV 62

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  132 bits (333), Expect = 1e-32
 Identities = 78/467 (16%), Positives = 160/467 (34%), Gaps = 36/467 (7%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           S+  L+ L +S+  +                 L+ L ++ N L   +        +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
           D+S N            +++ ++ L LS  + +   S+ P+ + +  K+          +
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEK 154

Query: 171 ITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYH-QHDLEYVDLSHIKMNGEFPNWLLE 229
             +   L       NT SL   +     F   L      +  ++LS+IK   E       
Sbjct: 155 E-DPEGL----QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289
            +   +                  S+  L  ++ + N+    + +     +    + N  
Sbjct: 210 LSILAKLQTNPKL-----------SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 290 MNALDGS--IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
           +           S  ++K L I  + ++        ++     N+     + +  +    
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQ 405
                ++    L    N     + ++    + LE L L  N L  L KI      +  LQ
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 406 YIIMPNNHLEGPIPVEFC-QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464
            + +  N +        C    SL  L++S N ++ ++  C  P  IK + L  N +   
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK-S 435

Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQLSHLILGHNNL 510
           + +       +L  L+++ N+L  S+PD   D L+ L  + L  N  
Sbjct: 436 IPKQ-VVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  125 bits (315), Expect = 2e-30
 Identities = 96/472 (20%), Positives = 161/472 (34%), Gaps = 30/472 (6%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
               L I+ N +       + +++ LRIL +S N++   +  S       +E L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
               IS  P  N   LK  +   N   A +           QL  L LS+ + +      
Sbjct: 81  LVK-ISCHPTVN---LKHLDLSFNAFDA-LPIC-KEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWL---------LENNTKLETLFLVNDSLAGPFRLPI 252
             +       + L       E P  L         +   T  E  F+++ S+     L +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 312
            + K + + +  +  +     ++    L +L + N                   +    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 313 SNNHLTG----EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 368
           SN  L G       ++       L    + ++             +N+       +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLD 426
                 SK S    L  +NN L   +    G+LT L+ +I+  N L+    I     Q+ 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 427 SLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT-LDLSY 483
           SLQ LDIS N++S       C    S+  +++S N     L    F      +  LDL  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDLHS 430

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
           N++  SIP  V  L  L  L +  N L+         L  LQ + L  N   
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 2e-27
 Identities = 89/472 (18%), Positives = 158/472 (33%), Gaps = 61/472 (12%)

Query: 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 267
            L  + +SH ++       + + N +LE L L ++ L     +  H    L+ LD+S N 
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA 101

Query: 268 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI-LDLSNNHLTGEIPEHLA 326
                  K    +  L     S   L+ S      ++   ++ L L   +   E PE L 
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 327 -VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEG--- 382
                +L  +  +N      L      + NL+   ++      +    LS  + L+    
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 383 ---LYLNNNSLLGKIPRWLGNL---TRLQYIIMPNNHLEGPIPVE-----FCQLDSLQIL 431
              L LNN          +  L   T + Y  + N  L+G +           L +L I 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 432 DISDNNISGSLPSCFHPLS---IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
            +  +         +   S   IK   +S       +        S  + LD S N L  
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 489 SIPDWVDGLSQLSHLILGHNNLE--GEVSVQLCELNQLQLLDLSNNNLHGPIPPC-FDNT 545
           ++ +    L++L  LIL  N L+   +++    ++  LQ LD+S N++           T
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 605
                                           +      ++  +       +   +  LD
Sbjct: 399 K-------------------------------SLLSLNMSSNILTDTIFRCLPPRIKVLD 427

Query: 606 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
           L  NK+   IP Q+  L  +Q LN++ N L       F  L  ++ + L  N
Sbjct: 428 LHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 1e-25
 Identities = 71/399 (17%), Positives = 144/399 (36%), Gaps = 28/399 (7%)

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 367
           ++D S N L   +P+ L+        L +S N +   L++ +  +L+ L+ L +  NR  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ---KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 368 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLD 426
                       LE L L++N L  KI         L+++ +  N  +  PI  EF  + 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
            L+ L +S  ++  S       L+I +V L     +G+ +           T  L     
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFP 173

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN----NLHGPIPPCF 542
                 ++  +S  +   L  +N++  +    C      L  L  N    NL        
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 543 DNTTLHESYSNSSSPDEQFEIF---FSIEGHQGFLEKQNHEIFEFTTKNIA----YIYQG 595
            N+ +        +    F I       +      +     +   +   +        Q 
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 596 KV---LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESL 652
            +    S ++  + + +            ++    L+ S+N LT ++     +L  +E+L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 653 DLSNNKLN--GKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
            L  N+L    KI     ++K+L+   ++ N++S +  +
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 4e-23
 Identities = 75/447 (16%), Positives = 159/447 (35%), Gaps = 40/447 (8%)

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
           +D S N +  H+P  +      L +  N ++ L     S   ++  L+IL +S+N +   
Sbjct: 5   VDRSKNGLI-HVPKDLSQKTTILNISQNYISELW---TSDILSLSKLRILIISHNRIQ-Y 59

Query: 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS--LSKCS 378
           +   +      L++L LS+N L            NL+ L L  N F   +P        S
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNMS 115

Query: 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF---CQLDSLQILDISD 435
            L+ L L+   L       + +L   + +++           E       +SL I+  ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV----TLDLSYNRLNGSIP 491
                 L      ++  ++   K +L            + L       +L+ N +  +  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 492 DWVDGLSQLSHLILGHNNLEG----------EVSVQLCELNQLQLLDLSNNNLHGPIPPC 541
            ++  L  + H  + + ++            +       L  L +  + ++    P    
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 542 FDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
           ++  + ++      S       +  S       L+  N+ + +   +N  +      L+ 
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH------LTE 349

Query: 601 LSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNN 657
           L  L L  N+L  +  I      +  +Q L++S N+++        S  K + SL++S+N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLS 684
            L   I   L     ++V  +  N + 
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 41  NTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC 100
                 +    +    +L  S   L              L  L+ L +  N L+  L   
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG----HLTELETLILQMNQLK-ELSKI 366

Query: 101 M---ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL 157
                 M SL+ LD+S N ++            S+  L +S+N   +  ++       R+
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN--ILTDTIFRCLP-PRI 423

Query: 158 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
           K+ +  +N+IK+   +   L      L  L+++SN
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLE----ALQELNVASN 454

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (312), Expect = 3e-31
 Identities = 60/295 (20%), Positives = 111/295 (37%), Gaps = 28/295 (9%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           LR +  S+  ++  +P +I      L + NN ++ L       F  ++ L  L L NN +
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKI 90

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL 374
           + +I E        LQ L +S N+L     +L S      +L  L++  NR         
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 375 SKCSSLEGLYLNNNSL-LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 433
           S   ++  + +  N L          +  +L Y+ +    L G IP +    ++L  L +
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHL 200

Query: 434 SDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
             N I             + ++ L  N +   ++ G+     +L  L L  N+L+  +P 
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 493 WVDGLSQLSHLILGHNNLEG------EVSVQLCELNQLQLLDLSNNNL-HGPIPP 540
            +  L  L  + L  NN+               +      + L NN + +  + P
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 1e-27
 Identities = 69/367 (18%), Positives = 128/367 (34%), Gaps = 83/367 (22%)

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 364
            L+++  S+  L   +P+ ++    +   L L NN++   L   +F  L +L  L L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FC 423
           +      ++ S    L+ LY++ N L  +IP      + L  + + +N +   +P   F 
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHL-VEIPP--NLPSSLVELRIHDNRIRK-VPKGVFS 144

Query: 424 QLDSLQILDISDNNISGSL--PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
            L ++  +++  N +  S   P  F  L +  + +S+  L   + +       +L  L L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP---ETLNELHL 200

Query: 482 SYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 540
            +N++  +I        S+L  L LGHN +    +  L  L  L+ L L NN L   +P 
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPA 258

Query: 541 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
              +                                                     L L
Sbjct: 259 GLPD-----------------------------------------------------LKL 265

Query: 601 LSGLDLSCNKLIGHIPPQI-------GNLTRIQTLNLSHNNLTGSI--PSTFSNLKHVES 651
           L  + L  N  I  +                   ++L +N +      P+TF  +    +
Sbjct: 266 LQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 652 LDLSNNK 658
           +   N K
Sbjct: 325 IQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (271), Expect = 8e-26
 Identities = 52/267 (19%), Positives = 107/267 (40%), Gaps = 28/267 (10%)

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQILDL 312
           + L  L + NN I   I  K    L     LY+  N +  +  ++PSS      L  L +
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS------LVELRI 130

Query: 313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-FNLTNLQWLQLEGNRFVGEIP 371
            +N +  ++P+ +  G  N+  + +  N L+   F    F+   L +L++   +    IP
Sbjct: 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188

Query: 372 QSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 430
           + L    +L  L+L++N +   I    L   ++L  + + +N +          L +L+ 
Sbjct: 189 KDLP--ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 431 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF------FNCSSLVTLDLSY 483
           L + +N +S  +P+    L  ++ V+L  N +  ++    F         +    + L  
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 484 NRLNGSI--PDWVDGLSQLSHLILGHN 508
           N +      P     ++    +  G+ 
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 6e-24
 Identities = 48/239 (20%), Positives = 95/239 (39%), Gaps = 18/239 (7%)

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
           ++L++L +S N++   IP  +   L  L + +N +  +       F  ++ +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN 157

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SL 374
            L     E  A   + L +L +S   L   +         L  L L+ N+    I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 375 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 434
            + S L  L L +N +       L  L  L+ + + NN L   +P     L  LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 435 DNNISGSLPSCFHPL-------SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 485
            NNI+    + F P+           + L  N + + +++  TF   +  + +     +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 44/267 (16%)

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
              +LD+ +N+IS      F  L  +  + L  N +  ++    F     L  L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL-HGPIPP-CFD 543
           L   IP   +  S L  L +  N +          L  +  +++  N L +    P  FD
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603
              L+    + +                                 +  I    +   L+ 
Sbjct: 171 GLKLNYLRISEA--------------------------------KLTGI-PKDLPETLNE 197

Query: 604 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 662
           L L  NK I  I  +     +++  L L HN +      + S L  +  L L NNKL+ +
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 663 IPHQLVELKTLEVFSVAYNNLSGEIPE 689
           +P  L +LK L+V  +  NN++ ++  
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 56/342 (16%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
           HL+ +  +   L+ ++P  ++      +LD+ +N ++  +       L  +  L+L NN 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ-LNTLSLSSNYGDGFIFP 200
               I  +      +L+      N +         +       L  L +  N        
Sbjct: 90  ISK-IHEKAFSPLRKLQKLYISKNHLV-------EIPPNLPSSLVELRIHDN-------- 133

Query: 201 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA-GPFRLPIHSHKRLR 259
                           I+   + P  +      +  + +  + L    F        +L 
Sbjct: 134 ---------------RIR---KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 319
            L +S   +   IP  + + L  L++ +N + A++            L  L L +N +  
Sbjct: 176 YLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIE---LEDLLRYSKLYRLGLGHNQIR- 230

Query: 320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS------ 373
            I          L+ L L NN L   + +   +L  LQ + L  N    ++  +      
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVG 288

Query: 374 -LSKCSSLEGLYLNNNSL-LGKI-PRWLGNLTRLQYIIMPNN 412
              K +   G+ L NN +   ++ P     +T    I   N 
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 48/325 (14%), Positives = 90/325 (27%), Gaps = 101/325 (31%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
             +  L+ L +S      N    +   L     L EL I  N +R       + + ++  
Sbjct: 99  SPLRKLQKLYISK-----NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIK 168
           +++  N L  S           +  L +S      IP  L        L   + ++N+I+
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQ 206

Query: 169 AEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL 228
             I      +    +L  L L  N                     +  I  NG       
Sbjct: 207 -AIELED--LLRYSKLYRLGLGHN--------------------QIRMI-ENGSLSFL-- 240

Query: 229 ENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 288
                                        LR+L + NN +                    
Sbjct: 241 ---------------------------PTLRELHLDNNKLS------------------- 254

Query: 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE------HLAVGCVNLQFLALSNNNL 342
                   +P+   ++K LQ++ L  N++T ++           V       ++L NN +
Sbjct: 255 -------RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 343 QGHLFSRN--FNLTNLQWLQLEGNR 365
                       +T+   +Q    +
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 43/242 (17%), Positives = 68/242 (28%), Gaps = 61/242 (25%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
                LDL  N ++    D   GL  L  L+L +N +          L +LQ L +S N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 534 LHGPIPPCFDN-TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           L    P    +   L    +     P   F                              
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSG---------------------------- 145

Query: 592 IYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--------- 641
                 L  ++ +++  N L      P   +  ++  L +S   LT  IP          
Sbjct: 146 ------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNEL 198

Query: 642 -------------TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
                               +  L L +N++       L  L TL    +  N LS  +P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 689 EW 690
             
Sbjct: 258 AG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
           L  +  S   L   +P +I        L+L +N+++      F  L+H+ +L L NNK++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
                    L+ L+   ++ N+L  EIP 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPP 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (319), Expect = 1e-30
 Identities = 67/323 (20%), Positives = 117/323 (36%), Gaps = 56/323 (17%)

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
           ++    +     L+V  + +   +P  +   + +L + +N++     S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT----SLPALPPE---LR 84

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 368
            L++S N LT  +P     G + L   +    +L           + L  L + GN+   
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL--- 425
            +P        L+ L +++N  L  +P     L +L      NN L   +P+    L   
Sbjct: 135 SLPVLP---PGLQELSVSDNQ-LASLPALPSELCKLW---AYNNQLTS-LPMLPSGLQEL 186

Query: 426 --------------DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 471
                           L  L   +N ++ SLP+   P  +K++ +S N L          
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRL-----TSLPV 238

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             S L  L +S NRL  S+P      S L  L +  N L   +   L  L+    ++L  
Sbjct: 239 LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 532 NNLHGPIPPCFDNTTLHESYSNS 554
           N L           T    YS  
Sbjct: 294 NPLSERTLQALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  123 bits (309), Expect = 3e-29
 Identities = 79/359 (22%), Positives = 137/359 (38%), Gaps = 54/359 (15%)

Query: 209 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 268
              +++    +    P+ L  +   + TL + +++L     LP      LR L+VS N +
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 269 RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 328
              +PV     L  L +F+N +  L             L  L +  N LT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 388
              LQ L++S+N L     S     + L  L    N+    +P   S    L+ L +++N
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 389 SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP 448
            L   +P     L +L      NN L   +P        L+ L +S N ++ SLP    P
Sbjct: 192 QL-ASLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPV--LP 240

Query: 449 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508
             +K++ +S N L   L        S L++L +  N+L   +P+ +  LS  + + L  N
Sbjct: 241 SELKELMVSGNRL-TSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 509 NLEGEVSVQLCELNQLQLLDLSNNNL----HGPIPPCFDNTTLHESYSNSSSPDEQFEI 563
            L       L  L ++      +  +            +   LH + ++   P  + E 
Sbjct: 295 PLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 2e-28
 Identities = 76/374 (20%), Positives = 122/374 (32%), Gaps = 104/374 (27%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
             +L++  + LT  +P+ L     ++  L + +NNL     S       L+ L++ GN+ 
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
              +P        L         L    P     L +L    +  N L   +PV      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVL---PP 141

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
            LQ L +SDN ++ SLP+                             S L  L    N+L
Sbjct: 142 GLQELSVSDNQLA-SLPALP---------------------------SELCKLWAYNNQL 173

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNNLHGPIPPCFDN- 544
             S+P      S L  L +  N L       L    ++L  L   NN L   +P      
Sbjct: 174 T-SLPM---LPSGLQELSVSDNQLA-----SLPTLPSELYKLWAYNNRLT-SLPALPSGL 223

Query: 545 TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603
             L  S +  +S P                                         S L  
Sbjct: 224 KELIVSGNRLTSLPVL--------------------------------------PSELKE 245

Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
           L +S N+L   +P     L     L++  N LT  +P +  +L    +++L  N L+ + 
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 664 PHQLVELKTLEVFS 677
              L E+ +   +S
Sbjct: 301 LQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 3e-26
 Identities = 78/430 (18%), Positives = 140/430 (32%), Gaps = 66/430 (15%)

Query: 78  CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 137
           C       L +  + L  +LP C+     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 138 SNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
           S N    +P+    L     L IF+     + A  +           L  L +  N    
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPS----------GLCKLWIFGNQLTS 135

Query: 197 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 256
              P        L+ + +S  ++    P       ++L  L+  N+ L     LP     
Sbjct: 136 L--PVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
            L++L VS+N +   +P    + L  L+ +NN + +L             L+ L +S N 
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 376
           LT  +P   +     L+ L +S N L     S     + L  L +  N+    +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 377 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
            SS   + L  N L  +  + L  +T       P         +                
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR----FDMAGASAPRETRALHLAA 338

Query: 437 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR---LNGSIPDW 493
                      P    + H+     +       F      ++   ++ +       I  W
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNAD----AFSLFLDRLSETENFIKDAGFKAQISSW 394

Query: 494 VDGLSQLSHL 503
           +  L++   L
Sbjct: 395 LAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 58/270 (21%), Positives = 89/270 (32%), Gaps = 71/270 (26%)

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF--NCSSLVTLD 480
           C  +   +L++ ++ ++ +LP C  P  I  + +  N L       T        L TL+
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNL-------TSLPALPPELRTLE 87

Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 540
           +S N+L  S+P    GL +LS       +L           + L  L +  N L   +P 
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS-LPV 138

Query: 541 CFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599
                  L  S +  +S                                          S
Sbjct: 139 LPPGLQELSVSDNQLASLPAL-------------------------------------PS 161

Query: 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
            L  L    N+L   +P     L   Q L++S N L  S+P+  S L     L   NN+L
Sbjct: 162 ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSEL---YKLWAYNNRL 213

Query: 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
              +P     LK L V      N    +P 
Sbjct: 214 T-SLPALPSGLKELIV----SGNRLTSLPV 238

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 6e-13
 Identities = 66/375 (17%), Positives = 117/375 (31%), Gaps = 76/375 (20%)

Query: 15  FPHFKSLEHFDMDFTRI-ALNTSFIALNTSFLQI--ISESMPSLKYLSLSYYTLGTNSSG 71
            P    L  F    T + AL +    L     Q+  +    P L+ LS+S      N   
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD-----NQLA 154

Query: 72  TLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 131
           +L         L +L+  +N L  SLP      + L+ L VS NQL  S+ + P    + 
Sbjct: 155 SLPALPS---ELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA-SLPTLP----SE 202

Query: 132 IEELMLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 190
           + +L   NN    +P         S LK      N +   +    S      +L  L +S
Sbjct: 203 LYKLWAYNNRLTSLPALP------SGLKELIVSGNRLT-SLPVLPS------ELKELMVS 249

Query: 191 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL 250
            N                L              P       + L +L +  + L    RL
Sbjct: 250 GNR---------------LT-----------SLPMLP----SGLLSLSVYRNQLT---RL 276

Query: 251 P--IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
           P  +        +++  N +     ++    + S   ++  +   D +  S+    + L 
Sbjct: 277 PESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 368
               + + L        A          +         FS   +  +     ++   F  
Sbjct: 336 --LAAADWLVPAREGEPA----PADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKA 389

Query: 369 EIPQSLSKCSSLEGL 383
           +I   L++ +  E L
Sbjct: 390 QISSWLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 55/182 (30%)

Query: 515 SVQLCELNQLQLLDLSNNNLHGPIPPCFDN--TTLHESYSNSSS-PDEQFEIFFSIEGHQ 571
            ++ C  N   +L++  + L   +P C     TTL    +N +S P              
Sbjct: 33  KMRACLNNGNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLTSLPAL------------ 79

Query: 572 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 631
                                        L  L++S N+L   +P     L  +   +  
Sbjct: 80  --------------------------PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNP 112

Query: 632 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWK 691
             +L             +  L +  N+L   +P     L+ L   SV+ N L+  +P   
Sbjct: 113 LTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALP 160

Query: 692 AQ 693
           ++
Sbjct: 161 SE 162

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 3e-30
 Identities = 93/516 (18%), Positives = 178/516 (34%), Gaps = 83/516 (16%)

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
           E     S +        + +     D +   + +   +  + V   +  M  + P  LL+
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAALLD 72

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289
           +  ++E L L +  +             +++L +  N IR ++P  +   +P L V    
Sbjct: 73  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE 131

Query: 290 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR 349
            N L       F N   L  L +SNN+L   I +       +LQ L LS+N L     S 
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS- 189

Query: 350 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL------------------- 390
              + +L    +  N        +L+   ++E L  ++NS+                   
Sbjct: 190 --LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242

Query: 391 -LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL 449
            L     WL N   L  + +  N LE  +   F ++  L+ L IS+N +  +L     P+
Sbjct: 243 NLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 509
                                    +L  LDLS+N L   +        +L +L L HN+
Sbjct: 301 ------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 510 LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG 569
           +    +++L   + L+ L LS+N+       C     L  + +  +  D         + 
Sbjct: 336 IV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVARPAVDDADQHCKIDYQL 387

Query: 570 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 629
             G   K++ + +             ++L  ++   +        +    G  +   T+N
Sbjct: 388 EHGLCCKESDKPYL-----------DRLLQYIALTSVVEK-----VQRAQGRCSATDTIN 431

Query: 630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 665
              +            L+  E L+   N+L  ++  
Sbjct: 432 SVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 2e-29
 Identities = 97/608 (15%), Positives = 196/608 (32%), Gaps = 58/608 (9%)

Query: 67  TNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 126
                 +D  L       +++I          +    + + +I+   ++ +   + ++ L
Sbjct: 13  QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 71

Query: 127 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
                +E L L++   +  I          ++      N I+                  
Sbjct: 72  DSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------- 113

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
                      + P    +   L  + L    ++   P  +  N  KL TL + N++L  
Sbjct: 114 -----------LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
                  +   L+ L +S+N +  H+ +    ++PSL+  N S N L     S+      
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIA 212

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           ++ LD S+N +   +   +    V L  L L +NNL     +   N   L  + L  N  
Sbjct: 213 VEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
              +     K   LE LY++NN  L  +  +   +  L+ + + +NHL   +     Q D
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFD 324

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
            L+ L +  N+I     S  H L  K + LS N       R  F N +     D   +  
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCK 382

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
                +      +     L        ++  + ++ + Q    + + ++         T 
Sbjct: 383 IDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQ 442

Query: 547 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                   +   E        E ++   E Q     +   + +      ++ + L    L
Sbjct: 443 QGGVPLQGNEQLEA-------EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRL 495

Query: 607 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPH 665
             + L           T ++         T        +  K  E L+  N  L  ++ +
Sbjct: 496 PKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555

Query: 666 QLVELKTL 673
           +  +   L
Sbjct: 556 KRAKQAEL 563

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 7e-28
 Identities = 67/351 (19%), Positives = 126/351 (35%), Gaps = 53/351 (15%)

Query: 335 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI 394
               ++NLQ      + ++         G   +          ++ + +   N+++    
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT--------LNNQKIVTFKNSTMRKLP 67

Query: 395 PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQ 453
              L +  +++ + + +  +E      F    ++Q L +  N I    P  F  +  +  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 454 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 513
           + L +N L   L RG F N   L TL +S N L     D     + L +L L  N L   
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-- 184

Query: 514 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF 573
             V L  +  L   ++S N L   +        L  S+++                    
Sbjct: 185 -HVDLSLIPSLFHANVSYNLLST-LAIPIAVEELDASHNS-------------------- 222

Query: 574 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 633
                          I  + +G V   L+ L L  N L       + N   +  ++LS+N
Sbjct: 223 ---------------INVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264

Query: 634 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
            L   +   F  ++ +E L +SNN+L   +      + TL+V  +++N+L 
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 52/243 (21%)

Query: 456 LSKNMLHGQLKRGTFFNC------SSLVTLDLSYNRLNGSIPDWVD--GLSQLSHLILGH 507
           +     +    R   + C         V  D+  +     +    +   L+    +   +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 508 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSN-SSSPDEQFE 562
           + +    +  L    Q++LL+L++  +       F        L+  ++     P   F 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF- 119

Query: 563 IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GN 621
                                            + + LL+ L L  N  +  +P  I  N
Sbjct: 120 ---------------------------------QNVPLLTVLVLERND-LSSLPRGIFHN 145

Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681
             ++ TL++S+NNL      TF     +++L LS+N+L   +   L  + +L   +V+YN
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYN 202

Query: 682 NLS 684
            LS
Sbjct: 203 LLS 205

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  123 bits (309), Expect = 2e-29
 Identities = 92/472 (19%), Positives = 166/472 (35%), Gaps = 30/472 (6%)

Query: 53  PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDV 112
           P  K LSLS  ++       +      L  L+ L ++ N +R            L  LDV
Sbjct: 52  PRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 113 SSNQLTGSISSSPLVHLTSIEELMLSNNYFQ-IPISLEPLF-NYSRLKIFNAENNEIKA- 169
           S N+L  +IS  P+  L     L LS N F  +P+     F N ++L        + +  
Sbjct: 108 SHNRLQ-NISCCPMASLR---HLDLSFNDFDVLPVC--KEFGNLTKLTFLGLSAAKFRQL 161

Query: 170 --EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN-- 225
                    L      L +  +     +    P             L  +++N       
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 226 --WLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 283
              L       E    +   L+   R P   +  L+ ++ +               +  L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 284 YVFNNSMNAL--DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
            ++N ++           S   +K L I  + N        E L      +    LS ++
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISD 340

Query: 342 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLG 399
                     + ++  +L    N F   + Q  S    L+ L L  N L    K+     
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQL-DSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458
           N++ L+ + +  N L        C   +S+ +L++S N ++GS+  C  P  +K + L  
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVKVLDLHN 459

Query: 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQLSHLILGHNN 509
           N +   + +    +  +L  L+++ N+L  S+PD   D L+ L ++ L  N 
Sbjct: 460 NRIM-SIPKD-VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (279), Expect = 8e-26
 Identities = 87/472 (18%), Positives = 168/472 (35%), Gaps = 36/472 (7%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
             + L ++ N +       ++ ++ LR+L +S N++  S+     +    +E L +S+N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
            Q   ++      + L+  +   N+                +L  L LS+          
Sbjct: 112 LQ---NI-SCCPMASLRHLDLSFNDFDV--LPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 202 FLYHQHDLEYVDLSHIKM-NGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS--HKRL 258
             +       +DL    +  GE  +  + N T L  +F  N   +    + +++  H +L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI-----LDLS 313
             + +++ N +  +   + ++     + N ++  ++ +   S    +F        L++ 
Sbjct: 226 SNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 314 NNHLTGEIPEHLAVGC----VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 369
           N  +T  I             +L    + N        +       +    L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 429
                   SS   L    N     + +    L RLQ +I+  N L+           ++ 
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMS 403

Query: 430 ILDISDNNISGSLPS------CFHPLSIKQVHLSKNMLHGQLKRGTFFNC--SSLVTLDL 481
            L+  D +++ SL S      C    SI  ++LS NML      G+ F C    +  LDL
Sbjct: 404 SLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT-----GSVFRCLPPKVKVLDL 457

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
             NR+  SIP  V  L  L  L +  N L+         L  LQ + L +N 
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (267), Expect = 3e-24
 Identities = 88/468 (18%), Positives = 165/468 (35%), Gaps = 55/468 (11%)

Query: 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 267
           +L  + LSH ++       +   N  LE L + ++ L     +       LR LD+S N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND 132

Query: 268 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI-LDLSNNHLTGEIPEHLA 326
                  K    L  L     S             ++    I LDL + H+ G   E L 
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 327 VGCVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFVGEIPQSLS----KCSSLE 381
           +    +  L    N+L     + + N L +LQ   ++ N    +   +      +  +L 
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 382 GLYLNNNSLLGKIPRWLGNL---TRLQYIIMPNNHLEGPIPVEF-----CQLDSLQILDI 433
            + L +     K    L        ++Y+ + N  +   I  E        L SL I  +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 434 SDNNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
            +     S  + +   +   +  LS +     +      + SS   L+ + N    S+  
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 493 WVDGLSQLSHLILGHNNLE--GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550
               L +L  LIL  N L+   +V++    ++ L+ LD+S N+L                
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL---------------- 415

Query: 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 610
                     ++   +       L   ++ +     + +           +  LDL  N+
Sbjct: 416 ------NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------PKVKVLDLHNNR 461

Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNN 657
           +   IP  + +L  +Q LN++ N L  S+P   F  L  ++ + L +N
Sbjct: 462 I-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 1e-22
 Identities = 72/391 (18%), Positives = 134/391 (34%), Gaps = 24/391 (6%)

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 367
           ++D SN +LT  +P+ L       + L+LS N++   L   +   L+ L+ L+L  NR  
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI- 88

Query: 368 GEIPQSL-SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQL 425
             +   +      LE L +++N L   I      +  L+++ +  N  +  P+  EF  L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 426 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
             L  L +S              L +  + L     H +          +   L L ++ 
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 545
            +         ++ L HL L +  L  E   +L           +  N+           
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG-- 603
           ++         P E   I+      +   E+  +      +  I ++     L       
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 604 --------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 655
                     LS +           + +    LN + N  T S+    S LK +++L L 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 656 NNKLN--GKIPHQLVELKTLEVFSVAYNNLS 684
            N L    K+      + +LE   V+ N+L+
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 75/455 (16%), Positives = 156/455 (34%), Gaps = 43/455 (9%)

Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQ 308
           I     LR L +S+N IR  +   +         L V +N +  +      S   M  L+
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNI------SCCPMASLR 124

Query: 309 ILDLSNNHLTGEIPEHLAVGC-VNLQFLALSNNNLQGHLFSRNFNL-TNLQWLQLEGNRF 366
            LDLS N     +P     G    L FL LS    +        +L  +   L L     
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 367 VGEIPQSLSK-CSSLEGLYLNNNSLLGKI------PRWLGNLTRLQYIIMPNNHLEGPIP 419
            G   +SL    +++  L  + NSL                L+ ++        L   + 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 420 VEFCQLD----SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS- 474
                      +LQ ++ +       L   F P  ++ +++    +  ++ R  F     
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSV-KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 475 ---SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
              SL+   +       S        ++++  +L  ++      V     +    L+ + 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N     +          ++     +  + F     +  +   LE  +  +    +     
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 651
                    +  L+LS N L G +   +    +++ L+L +N +  SIP   ++L+ ++ 
Sbjct: 423 TCAW--AESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 652 LDLSNNKLNGKIPH----QLVELKTLEVFSVAYNN 682
           L++++N+L   +P     +L  L+ +      ++N
Sbjct: 478 LNVASNQLK-SVPDGVFDRLTSLQYIW----LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 69/404 (17%), Positives = 135/404 (33%), Gaps = 48/404 (11%)

Query: 298 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQ 357
                 +  L++L LS+N +   +  H+ +   +L++L +S+N LQ         + +L+
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLR 124

Query: 358 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 417
            L L  N F       L  C                     GNLT+L ++ +        
Sbjct: 125 HLDLSFNDF-----DVLPVCKE------------------FGNLTKLTFLGLSAAKFRQ- 160

Query: 418 IPVEFCQLDSLQI----LDISDNNISGSLPSCFHPLSIKQVHL--SKNMLHGQLKRGTFF 471
             ++   +  L +    LD+   +I G         +   +HL    N L       +  
Sbjct: 161 --LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 472 NCSSLVTLDLSYNRLNG----SIPDWVDGLSQLSHLILGHNNLEGEVSV---QLCELNQL 524
               L   ++  N  N     +    +     L ++ L H     + SV   Q      +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 525 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 584
           + L++ N  +   I       +     S      +     FS E       + N ++   
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 585 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644
           +     ++      S  + L+ + N     +      L R+QTL L  N L  +      
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVAL 397

Query: 645 NLKHVESLDLSNNKLN----GKIPHQLVELKTLEVFSVAYNNLS 684
             K++ SL+  +  LN              +++ V +++ N L+
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 73/382 (19%), Positives = 131/382 (34%), Gaps = 36/382 (9%)

Query: 11  RSQGFPHFKSLEHFDM--------DFTRIA-LNTSFIALNTSFLQIISESMPSLKYLSLS 61
             + F +   L    +        D   +A L+ S I L+     I      SL+  + +
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 62  YYTLGTNS----SGTLDQGLCSLVHLQELYIASNDLRG----SLPWCMANMTSLRILDVS 113
              L  +     S  ++  + +L HLQ   I  ND       +    +    +L  + + 
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 114 SNQLT--GSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEI 171
             + T   S+          +E L + N      I  E               +      
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 172 TESHSLIAPKF-QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 230
             S   +   F ++N   LS +    FI            +++ +      +        
Sbjct: 318 LFSKEALYSVFAEMNIKMLSIS-DTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCST 375

Query: 231 NTKLETLFLVN---DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
             +L+TL L      +      +   +   L  LDVS N++  H   +      S+ V N
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---G 344
            S N L GS+         +++LDL NN +   IP+ +      LQ L +++N L+    
Sbjct: 435 LSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKSVPD 490

Query: 345 HLFSRNFNLTNLQWLQLEGNRF 366
            +F     LT+LQ++ L  N +
Sbjct: 491 GVFD---RLTSLQYIWLHDNPW 509

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  117 bits (296), Expect = 3e-29
 Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 13/258 (5%)

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 318
            ++  ++  +   +P  I      L + +N + +L       F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSSNGLS 65

Query: 319 -GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSL-S 375
                     G  +L++L LS N +     S NF  L  L+ L  + +        S+  
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP-NNHLEGPIPVEFCQLDSLQILDIS 434
              +L  L +++             L+ L+ + M  N+  E  +P  F +L +L  LD+S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 435 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 493
              +    P+ F+ L S++ +++S N     L    +   +SL  LD S N +  S    
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 494 VDGL-SQLSHLILGHNNL 510
           +    S L+ L L  N+ 
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 44/242 (18%)

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLDLSYN 484
           S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 485 RLNGSIPDWVDGLSQLSHLILGHNNLE--GEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 542
            +  ++     GL QL HL   H+NL+   E SV    L  L  LD+S+ +        F
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 543 DN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 598
           +       L  + ++                   F E    +IF               L
Sbjct: 147 NGLSSLEVLKMAGNS-------------------FQENFLPDIFTE-------------L 174

Query: 599 SLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
             L+ LDLS  + +  + P    +L+ +Q LN+SHNN        +  L  ++ LD S N
Sbjct: 175 RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 658 KL 659
            +
Sbjct: 234 HI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 7/182 (3%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEFCQLD 426
            +P  +   SS   L L +N L          LT+L  + + +N L   G          
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
           SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 486 LNGSIPDWVDGLSQLSHLILGHNN-LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
              +     +GLS L  L +  N+  E  +     EL  L  LDLS   L    P  F++
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 545 TT 546
            +
Sbjct: 198 LS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 16/237 (6%)

Query: 184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN-GEFPNWLLENNTKLETLFLVN- 241
              L L SN     +          L  + LS   ++     +      T L+ L L   
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 242 --DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 299
              +++  F       ++L  LD  ++N++      +   L +L   + S      +   
Sbjct: 89  GVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNL 356
            F  +  L++L ++ N         +     NL FL LS   L+      F+   +L++L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSL 201

Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL-TRLQYIIMPNN 412
           Q L +  N F           +SL+ L  + N ++    + L +  + L ++ +  N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 59/295 (20%), Positives = 96/295 (32%), Gaps = 71/295 (24%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAE 163
           +S   L++ SN+L  S+       LT + +L LS+N         +  F  + LK  +  
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 164 NNEIKAEITESHSLIAPKF----QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 219
            N +          ++  F    QL  L    +                    +L  +  
Sbjct: 87  FNGV--------ITMSSNFLGLEQLEHLDFQHS--------------------NLKQMSE 118

Query: 220 NGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
              F +                        L       L  LD+S+ + R      I + 
Sbjct: 119 FSVFLS------------------------LR-----NLIYLDISHTHTR-VAFNGIFNG 148

Query: 280 LPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS 338
           L SL V   + N+   +     F  ++ L  LDLS   L  ++         +LQ L +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 339 NNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSL--SKCSSLEGLYLNNNSL 390
           +NN    L +  +  L +LQ L    N  +    +       SSL  L L  N  
Sbjct: 208 HNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 53/293 (18%), Positives = 91/293 (31%), Gaps = 61/293 (20%)

Query: 53  PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL--RGSLPWCMANMTSLRIL 110
            S   L L    L +   G  D     L  L +L ++SN L  +G         TSL+ L
Sbjct: 28  SSATRLELESNKLQSLPHGVFD----KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 111 DVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
           D+S N +  ++SS+  + L  +E L   ++  +         +   L   +  +   +  
Sbjct: 84  DLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-- 139

Query: 171 ITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 230
                                       F         LE + ++       F   +   
Sbjct: 140 --------------------------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 231 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 290
              L  L L    L        +S   L+ L++S+NN    +                  
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLD----------------- 215

Query: 291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
                     +  +  LQ+LD S NH+     + L     +L FL L+ N+  
Sbjct: 216 -------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 31/237 (13%)

Query: 10  VRSQGFPHFKSLEHFDMDFTRI-ALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTN 68
             SQ      SL++ D+ F  +  ++++F+ L              L++L   +  L   
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL------------EQLEHLDFQHSNLKQM 116

Query: 69  SSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
           S  ++     SL +L  L I+    R +       ++SL +L ++ N    +        
Sbjct: 117 SEFSV---FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 188
           L ++  L LS    +  +S     + S L++ N  +N      +           L  L 
Sbjct: 174 LRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFF---SLDTFPYKCLNSLQVLD 229

Query: 189 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN--------GEFPNWLLENNTKLETL 237
            S N+       +  +    L +++L+    N          F  W+ +    L  +
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIKDQRQLLVEV 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  119 bits (301), Expect = 7e-29
 Identities = 59/284 (20%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
           +  ++  +   +   +P  I      L +  N++  +      +F ++  L++L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNS 110

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 373
           +  +I      G  +L  L L +N L       F     L+ L+ L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 374 LSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 432
            ++  SL  L L     L  I       L  L+Y+ +   +++  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 433 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
           +S N+                          +++ G+F   SSL  L +  ++++  I  
Sbjct: 225 MSGNHFP------------------------EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 493 WV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
              DGL+ L  L L HNNL          L  L  L L +N  +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (278), Expect = 6e-26
 Identities = 61/307 (19%), Positives = 104/307 (33%), Gaps = 65/307 (21%)

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
               +         E+PQ +   S+   L L  N++         +L  L+ + +  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNC 473
                  F  L SL  L++ DN ++      F  L  ++++ L  N +   +    F   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 474 SSLVTLDLS-YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSN 531
            SL+ LDL    +L        +GL  L +L LG  N+     +  L  L  L+ L++S 
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSG 227

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N+     P  F                                                 
Sbjct: 228 NHFPEIRPGSFHG----------------------------------------------- 240

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
                 LS L  L +  ++ +  I       L  +  LNL+HNNL+      F+ L+++ 
Sbjct: 241 ------LSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 651 SLDLSNN 657
            L L +N
Sbjct: 294 ELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (256), Expect = 3e-23
 Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 46/265 (17%)

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
           + + L++ +NNI       F  L  ++ + L +N +  Q++ G F   +SL TL+L  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 544
           L        + LS+L  L L +N +E   S     +  L  LDL        I    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 545 ----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
                 L+    N                                   I  +     L  
Sbjct: 195 LFNLKYLNLGMCN-----------------------------------IKDMPNLTPLVG 219

Query: 601 LSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
           L  L++S N     I P     L+ ++ L + ++ ++    + F  L  +  L+L++N L
Sbjct: 220 LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 660 NGKIPHQLVE-LKTLEVFSVAYNNL 683
           +  +PH L   L+ L    + +N  
Sbjct: 279 S-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 56/240 (23%), Positives = 95/240 (39%), Gaps = 26/240 (10%)

Query: 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLD 262
           +  Y++L    +          +   LE L L  +S+     G F  L       L  L+
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-----SLNTLE 129

Query: 263 VSNNNIRGHIPVKIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-NHLT 318
           + +N +   IP    + L     L++ NN + ++      +F  +  L  LDL     L 
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIP---SYAFNRVPSLMRLDLGELKKLE 185

Query: 319 GEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 377
             I E    G  NL++L L   N++     +    L  L+ L++ GN F    P S    
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDN 436
           SSL+ L++ N+ +          L  L  + + +N+L   +P + F  L  L  L +  N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 59/298 (19%), Positives = 100/298 (33%), Gaps = 82/298 (27%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQI----PISLEPLFNYSRLKIF 160
           ++ R L++  N +   I +    HL  +E L L  N   I      +   L +       
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLAS------- 124

Query: 161 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 220
                                  LNTL L  N                     L+ I   
Sbjct: 125 -----------------------LNTLELFDN--------------------WLTVI--- 138

Query: 221 GEFPNWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVK 275
              P+   E  +KL  L+L N+ +    +  F  +P      L +LD+       +I   
Sbjct: 139 ---PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEG 190

Query: 276 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 335
             + L +L   N  M  +   +P +   +  L+ L++S NH   EI      G  +L+ L
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKL 247

Query: 336 ALSNNNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
            + N+ +   + + F     L +L  L L  N          +    L  L+L++N  
Sbjct: 248 WVMNSQVSLIERNAFD---GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 66/287 (22%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
           + + L +  N+++        ++  L +L +  N +   I       L S+  L L +N+
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
             + I        S+L+     NN I        S+ +  F      + S          
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPI-------ESIPSYAFN----RVPS---------- 172

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQ 260
                  L  +DL  +K          E    L+ L L   ++     +P  +    L +
Sbjct: 173 -------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEE 222

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
           L++S N+    I                         P SF  +  L+ L + N+ ++  
Sbjct: 223 LEMSGNHFP-EIR------------------------PGSFHGLSSLKKLWVMNSQVS-L 256

Query: 321 IPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFNLTNLQWLQLEGN 364
           I  +   G  +L  L L++NNL      LF+    L  L  L L  N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFT---PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 24/236 (10%)

Query: 10  VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNS 69
           +++  F H   LE   +    I      I +   F       + SL  L L    L    
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSI----RQIEVGA-F-----NGLASLNTLELFDNWLTVIP 139

Query: 70  SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSS-NQLTGSISSSPLVH 128
           SG  +     L  L+EL++ +N +     +    + SL  LD+    +L   IS      
Sbjct: 140 SGAFE----YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEG 194

Query: 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLS 188
           L +++ L L     +    +  L     L+      N    EI            L  L 
Sbjct: 195 LFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EIRP--GSFHGLSSLKKLW 248

Query: 189 LSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL 244
           + ++     I          L  ++L+H  ++   P+ L      L  L L ++  
Sbjct: 249 VMNS-QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 62/219 (28%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
           +    +  +   L+  +P  +   S   +L L  NN++   +     L+ L++L L   N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG-RN 109

Query: 534 LHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 592
               I    F+                                                 
Sbjct: 110 SIRQIEVGAFNG------------------------------------------------ 121

Query: 593 YQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 651
                L+ L+ L+L  N  +  IP      L++++ L L +N +       F+ +  +  
Sbjct: 122 -----LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 652 LDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPE 689
           LDL   K    I       L  L+  ++   N+  ++P 
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  119 bits (299), Expect = 1e-28
 Identities = 66/267 (24%), Positives = 105/267 (39%), Gaps = 37/267 (13%)

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
            +P       R L++  N I+  I                          +SF +++ L+
Sbjct: 57  EVPDGISTNTRLLNLHENQIQ-IIK------------------------VNSFKHLRHLE 91

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNR 365
           IL LS NH+   I      G  NL  L L +N L       F     L+ L+ L L  N 
Sbjct: 92  ILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNP 147

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQ 424
                  + ++  SL  L L     L  I       L+ L+Y+ +   +L   IP     
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTP 205

Query: 425 LDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
           L  L  LD+S N++S   P  F  L  ++++ + ++ +   ++R  F N  SLV ++L++
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNL 510
           N L     D    L  L  + L HN  
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  118 bits (298), Expect = 1e-28
 Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
           +  ++     N+R  +P  I      L +  N +  +     +SF +++ L+IL LS NH
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIK---VNSFKHLRHLEILQLSRNH 99

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRFVGEIPQS 373
           +   I      G  NL  L L +N L       F     L+ L+ L L  N        +
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYA 155

Query: 374 LSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILD 432
            ++  SL  L L     L  I       L+ L+Y+ +   +L   IP     L  L  LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213

Query: 433 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
           +S N++S                         ++ G+F     L  L +  +++   I  
Sbjct: 214 LSGNHLS------------------------AIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

Query: 493 WV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
              D L  L  + L HNNL          L+ L+ + L +N  +
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (272), Expect = 3e-25
 Identities = 69/294 (23%), Positives = 107/294 (36%), Gaps = 66/294 (22%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
           E+P  +S  ++   L L+ N +         +L  L+ + +  NH+       F  L +L
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 429 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS-YNRL 486
             L++ DN ++      F  L  +K++ L  N +   +    F    SL  LDL    RL
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 487 NGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN 544
           +  I +   +GLS L +L L   NL     +  L  L +L  LDLS N+L    P  F  
Sbjct: 174 S-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
                                                                L  L  L
Sbjct: 230 -----------------------------------------------------LMHLQKL 236

Query: 605 DLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
            +  ++ I  I      NL  +  +NL+HNNLT      F+ L H+E + L +N
Sbjct: 237 WMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 5e-23
 Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 46/265 (17%)

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
           + ++L++ +N I     + F  L  ++ + LS+N +   ++ G F   ++L TL+L  NR
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 486 LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 544
           L          LS+L  L L +N +E   S     +  L+ LDL        I    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 545 ----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
                 L+ +  N                                   +  I     L  
Sbjct: 184 LSNLRYLNLAMCN-----------------------------------LREIPNLTPLIK 208

Query: 601 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
           L  LDLS N  +  I P     L  +Q L +  + +     + F NL+ +  ++L++N L
Sbjct: 209 LDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 660 NGKIPHQLVE-LKTLEVFSVAYNNL 683
              +PH L   L  LE   + +N  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 4e-18
 Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 21/218 (9%)

Query: 228 LENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS- 282
            ++   LE L L  + +     G F         L  L++ +N +   IP      L   
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLELFDNRLT-TIPNGAFVYLSKL 138

Query: 283 --LYVFNNSMNALDGSIPSSFGNMKFLQILDLS-NNHLTGEIPEHLAVGCVNLQFLALSN 339
             L++ NN + ++      +F  +  L+ LDL     L+  I E    G  NL++L L+ 
Sbjct: 139 KELWLRNNPIESIP---SYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAM 194

Query: 340 NNLQG-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL 398
            NL+     +    L  L  L L GN      P S      L+ L++  + +        
Sbjct: 195 CNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
            NL  L  I + +N+L       F  L  L+ + +  N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 70/294 (23%), Positives = 110/294 (37%), Gaps = 74/294 (25%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
           T+ R+L++  NQ+   I  +   HL  +E L LS N   I  ++E          FN   
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN--HIR-TIEI-------GAFNGLA 112

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
           N                  LNTL L  N                     L+ I      P
Sbjct: 113 N------------------LNTLELFDN--------------------RLTTI------P 128

Query: 225 NWLLENNTKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
           N      +KL+ L+L N+ +    +  F  +P      LR+LD+       +I     + 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-----SLRRLDLGELKRLSYISEGAFEG 183

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
           L +L   N +M  L   IP +   +  L  LDLS NHL+  I      G ++LQ L +  
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

Query: 340 NNL---QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
           + +   + + F    NL +L  + L  N          +    LE ++L++N  
Sbjct: 241 SQIQVIERNAFD---NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 50/266 (18%), Positives = 97/266 (36%), Gaps = 42/266 (15%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY 141
           + + L +  N ++        ++  L IL +S N +  +I       L ++  L L +N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 142 FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPK 201
               I        S+LK     NN I++                            I   
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIES----------------------------IPSY 154

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQ 260
                  L  +DL  +K          E  + L  L L   +L     +P  +   +L +
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDE 211

Query: 261 LDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           LD+S N++   I       L  L   ++  + +  ++    ++F N++ L  ++L++N+L
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIE---RNAFDNLQSLVEINLAHNNL 267

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQ 343
           T  +P  L     +L+ + L +N   
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 49/219 (22%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
           +    +      L   +PD +   +    L L  N ++         L  L++L LS N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 534 LHGPIPPCFDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 589
           +       F+      TL                              N          +
Sbjct: 100 IRTIEIGAFNGLANLNTLELFD--------------------------N---------RL 124

Query: 590 AYIYQG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSN 645
             I  G    LS L  L L  N  I  IP      +  ++ L+L        I    F  
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 646 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           L ++  L+L+   L  +IP+ L  L  L+   ++ N+LS
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 588 NIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TF 643
            I  I     K L  L  L LS N  I  I       L  + TL L  N LT +IP+  F
Sbjct: 75  QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAF 132

Query: 644 SNLKHVESLDLSNNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 689
             L  ++ L L NN +   IP    +++  L+ L++       LS  I E
Sbjct: 133 VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE--LKRLS-YISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
           E + +L+YL+L+   L           L  L+ L EL ++ N L    P     +  L+ 
Sbjct: 182 EGLSNLRYLNLAMCNL------REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFN 161
           L +  +Q+   I  +   +L S+ E+ L++N   +       PL +  R+ + +
Sbjct: 236 LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  114 bits (286), Expect = 1e-27
 Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 18/285 (6%)

Query: 262 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 321
             S+ ++   IP  + + + SL + NN +  +     S       LQ L L++N +   I
Sbjct: 37  KGSSGSLN-SIPSGLTEAVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGIN-TI 91

Query: 322 PEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSL-SKCSS 379
            E       +L+ L LS N L  +L S  F  L++L +L L GN +      SL S  + 
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 380 LEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 438
           L+ L + N     KI  +    LT L+ + +  + L+   P     + ++  L +     
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 439 SGSLPSCFHPL-SIKQVHLSKNMLHG----QLKRGTFFNCSSLVTL---DLSYNRLNGSI 490
              L        S++ + L    L      +L  G   +     T     ++   L   +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
              ++ +S L  L    N L+         L  LQ + L  N   
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (266), Expect = 5e-25
 Identities = 63/357 (17%), Positives = 113/357 (31%), Gaps = 82/357 (22%)

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFV 367
           I   S+  L   IP  L      ++ L LSNN +  ++ + +     NLQ L L  N   
Sbjct: 35  ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN 89

Query: 368 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 427
                S S   SLE L L+ N            L+ L                 F  L S
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYN-----------YLSNLS-------------SSWFKPLSS 125

Query: 428 LQILDISDNNISGSLP--SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           L  L++  N    +L   S F  L  ++ + +       +++R  F   + L  L++  +
Sbjct: 126 LTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 485 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
            L    P  +  +  +SHLIL        + + +   + ++ L+L + +L          
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF------- 237

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
                    S     +                                           +
Sbjct: 238 -------HFSELSTGETNSLIK-------------------------------KFTFRNV 259

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLN 660
            ++   L   +   +  ++ +  L  S N L  S+P   F  L  ++ + L  N  +
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 46/246 (18%), Positives = 98/246 (39%), Gaps = 15/246 (6%)

Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILD 311
                L+ L +++N I   I       L SL   + S N L  ++ SS F  +  L  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130

Query: 312 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEI 370
           L  N         L      LQ L + N +    +  ++F  LT L+ L+++ +      
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE--------F 422
           P+SL    ++  L L+    +  +  ++   + ++ + + +  L+     E         
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
            +  + + + I+D ++   +    + +  + ++  S+N L   +  G F   +SL  + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 482 SYNRLN 487
             N  +
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 54/326 (16%), Positives = 105/326 (32%), Gaps = 70/326 (21%)

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSL 428
           IP  L+   +++ L L+NN +       L     LQ +++ +N +   I  + F  L SL
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 429 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 488 GSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
             I      GL+ L  L +  ++L+      L  +  +  L L        +    D   
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-- 220

Query: 547 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                                                               S +  L+L
Sbjct: 221 ---------------------------------------------------TSSVECLEL 229

Query: 607 SCNKLIGHIPPQI--------GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
               L      ++              + + ++  +L   +    + +  +  L+ S N+
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 659 LNGKIPHQLVE-LKTLEVFSVAYNNL 683
           L   +P  + + L +L+   +  N  
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 46/251 (18%), Positives = 82/251 (32%), Gaps = 36/251 (14%)

Query: 414 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 473
            E          D   I   S  +++ S+PS     ++K + LS N +   +       C
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRC 75

Query: 474 SSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 532
            +L  L L+ N +N +I +     L  L HL L +N L    S     L+ L  L+L  N
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 533 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 592
                +               +S      ++     G+     K   + F          
Sbjct: 135 PYKT-LGE-------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-------- 172

Query: 593 YQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVE 650
                L+ L  L++  +  +    P+   ++  +  L L        +          VE
Sbjct: 173 -----LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225

Query: 651 SLDLSNNKLNG 661
            L+L +  L+ 
Sbjct: 226 CLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 30/289 (10%)

Query: 81  VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
             ++ L +++N +       +    +L+ L ++SN +  +I       L S+E L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 141 YFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFP 200
           Y    +S       S L   N   N  K  + E+ SL +   +L  L + +      I  
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGET-SLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 201 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ 260
           K       LE +++    +   +    L++   +  L L          L          
Sbjct: 168 KDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDVTSS 223

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
           ++                 L    +     + L     +S       + + +++  L   
Sbjct: 224 VECLE--------------LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ- 268

Query: 321 IPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRF 366
               L      L  L  S N L+     +F     LT+LQ + L  N +
Sbjct: 269 -VMKLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 42/294 (14%), Positives = 93/294 (31%), Gaps = 54/294 (18%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM-ANMTSLRI 109
              +L+ L L+   + T    +      SL  L+ L ++ N L  +L       ++SL  
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTF 128

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L++  N       +S   HLT ++ L + N      I  +     + L+    + ++++ 
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ- 187

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
             +     +     ++ L L        +   F+     +E ++L            L  
Sbjct: 188 --SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD--------TDLDT 236

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289
            +         ++   G     I      R + +++ ++                     
Sbjct: 237 FH--------FSELSTGETNSLIKKFT-FRNVKITDESLF-------------------- 267

Query: 290 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
                  +      +  L  L+ S N L   +P+ +     +LQ + L  N   
Sbjct: 268 ------QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLD 74
               +++ H  +   +              L+I  +   S++ L L    L T     L 
Sbjct: 194 LKSIQNVSHLILHMKQH----------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 75  QG----LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130
            G    L      + + I    L   +   +  ++ L  L+ S NQL  S+       LT
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301

Query: 131 SIEELMLSNN 140
           S++++ L  N
Sbjct: 302 SLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 12/195 (6%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM-ANMTSLR 108
           + + SL +L+L      T    +L   L  L  L+       D    +     A +T L 
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN---MDTFTKIQRKDFAGLTFLE 177

Query: 109 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNA--EN 164
            L++ ++ L  S     L  + ++  L+L      +   I ++   +   L++ +   + 
Sbjct: 178 ELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
                  T   + +  KF    + ++      F   K L     L  ++ S  ++    P
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDE--SLFQVMKLLNQISGLLELEFSRNQLKS-VP 293

Query: 225 NWLLENNTKLETLFL 239
           + + +  T L+ ++L
Sbjct: 294 DGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 48/221 (21%)

Query: 473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 532
           C        S   LN SIP        +  L L +N +    +  L     LQ L L++N
Sbjct: 30  CDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 533 NLHGPIPP-CFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 586
            ++  I    F +      L  SY+  S+     F+                        
Sbjct: 87  GINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK------------------------ 121

Query: 587 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNLTGSIPS-TF 643
                      LS L+ L+L  N     +       +LT++Q L + + +    I    F
Sbjct: 122 ----------PLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 644 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           + L  +E L++  + L    P  L  ++ +    +      
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  108 bits (273), Expect = 2e-26
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVG 368
                  L   +P  +       Q + L  N +  H+ + +F    NL  L L  N    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR 70

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 426
               + +  + LE L L++N+ L  +       L RL  + +    L+  +    F  L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLA 129

Query: 427 SLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           +LQ L + DN +  +LP   F  L ++  + L  N +   +    F    SL  L L  N
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187

Query: 485 RLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
           R+   +       L +L  L L  NNL    +  L  L  LQ L L++N   
Sbjct: 188 RVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 6/208 (2%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
            +++ +  N I  H+P        +L +     N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSLS 375
              +      G   L  L L    LQ  L    F  L  LQ+L L+ N     +P  +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
              +L  L+L+ N +     R    L  L  +++  N +    P  F  L  L  L +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 436 NNISGSLPSCFHPL-SIKQVHLSKNMLH 462
           NN+S        PL +++ + L+ N   
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
            +P  +   ++ + ++L+ N +             L  + + +N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 429 QILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
           + LD+SDN    S+    FH L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 487 NGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 544
             ++PD     L  L+HL L  N +          L+ L  L L  N +   + P  F +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRD 199

Query: 545 TT 546
             
Sbjct: 200 LG 201

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 48/245 (19%), Positives = 77/245 (31%), Gaps = 47/245 (19%)

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
           C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 483 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPIPP- 540
            N L         GL+ L  L L  N     V       L +L  L L    L   + P 
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPG 123

Query: 541 CFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 595
            F        L+   +   + PD+ F                                  
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTF---------------------------------- 149

Query: 596 KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
           + L  L+ L L  N+ I  +P +    L  +  L L  N +    P  F +L  + +L L
Sbjct: 150 RDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 655 SNNKL 659
             N L
Sbjct: 209 FANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 42/218 (19%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
           ++   + L  NR++            L+ L L  N L    +     L  L+ LDLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 534 LHGPIPP-CFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 587
               + P  F       TLH             F                          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR------------------------- 126

Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNL 646
                     L+ L  L L  N  +  +P     +L  +  L L  N ++      F  L
Sbjct: 127 ---------GLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 647 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
             ++ L L  N++    PH   +L  L    +  NNLS
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 51/297 (17%), Positives = 84/297 (28%), Gaps = 96/297 (32%)

Query: 53  PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDV 112
            + + + L    +    + +      +  +L  L++ SN L          +  L  LD+
Sbjct: 32  AASQRIFLHGNRISHVPAASFR----ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 113 SSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-LFNYSRLKIFNAENNEIKAEI 171
           S N    S+  +    L  +  L L     Q    L P LF    L              
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLF--RGLA------------- 129

Query: 172 TESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN 231
                       L  L L  N                     L  +      P+    + 
Sbjct: 130 -----------ALQYLYLQDN--------------------ALQAL------PDDTFRDL 152

Query: 232 TKLETLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 286
             L  LFL  + +       FR L       L +L +  N +  H+              
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLH-----SLDRLLLHQNRVA-HVH------------- 193

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
                      P +F ++  L  L L  N+L+  +P         LQ+L L++N   
Sbjct: 194 -----------PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 655
           L+LL  LDLS N  +  + P     L R+ TL+L    L   +    F  L  ++ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 656 NNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPE 689
           +N L   +P     +L  L    +  N +S  +PE
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 601 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
              + L  N+ I H+P         +  L L  N L     + F+ L  +E LDLS+N  
Sbjct: 34  SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 660 NGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 689
              +     H L  L TL    +    L  E+  
Sbjct: 93  LRSVDPATFHGLGRLHTL---HLDRCGLQ-ELGP 122

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (277), Expect = 7e-26
 Identities = 79/473 (16%), Positives = 152/473 (32%), Gaps = 100/473 (21%)

Query: 83  LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 142
                 A+ +++ +       + +L  LD  ++ +T     + +  LT + +L+ ++N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 143 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF-QLNTLSLSSNYGDGFIFPK 201
              I+   L   + L     ++N++        +L      +L  L+  +N         
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLT-------NLDVTPLTKLTYLNCDTN--------- 116

Query: 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL 261
                  L  +D+S               N  L  L    ++L     + +  + +L +L
Sbjct: 117 ------KLTKLDVS--------------QNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 262 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 321
           D   N     + V     L +L    N +  LD          K L  L+   N++T ++
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCDTNNIT-KL 206

Query: 322 PEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 381
                   + L FL  S+N L     +    LT L +     N    E+   +S  S L 
Sbjct: 207 D---LNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPL-TELD--VSTLSKLT 257

Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 441
            L+     LL +I   L + T+L Y           +  +      L +LD     I+  
Sbjct: 258 TLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-E 311

Query: 442 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS 501
           L                                 LV L L+   L   +   V   ++L 
Sbjct: 312 LD--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTKLK 342

Query: 502 HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 554
            L   + +++ + S  + ++  L     +             N +L  + S  
Sbjct: 343 SLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (261), Expect = 9e-24
 Identities = 85/423 (20%), Positives = 148/423 (34%), Gaps = 56/423 (13%)

Query: 40  LNTSFLQIISES-MPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP 98
                   ISE  + +L  L         +S   +  G+  L  L +L   SN++  +L 
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHN-----SSITDMT-GIEKLTGLTKLICTSNNIT-TLD 80

Query: 99  WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLK 158
             ++  T+L  L   SN+LT    +  +  LT +  L    N     ++   +     L 
Sbjct: 81  --LSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTN----KLTKLDVSQNPLLT 130

Query: 159 IFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 218
             N   N +  EI  SH+      QL  L    N     I    +  Q  L  +D S  K
Sbjct: 131 YLNCARNTLT-EIDVSHNT-----QLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNK 181

Query: 219 MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 278
           +  E     +  N  L  L    +++    +L ++ + +L  LD S+N +   I V    
Sbjct: 182 IT-ELD---VSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-EIDVTPLT 233

Query: 279 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS 338
            L       N +  LD         +  L  L      L  EI          L +    
Sbjct: 234 QLTYFDCSVNPLTELD------VSTLSKLTTLHCIQTDLL-EID---LTHNTQLIYFQAE 283

Query: 339 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL 398
                  L     + T L  L  +      E+   LS+   L  LYLNN  L  ++   +
Sbjct: 284 GCRKIKELDVT--HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--V 335

Query: 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458
            + T+L+ +   N H++        ++ +L     ++     ++P      +   + +S 
Sbjct: 336 SHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSP 392

Query: 459 NML 461
           ++L
Sbjct: 393 DLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (261), Expect = 1e-23
 Identities = 68/408 (16%), Positives = 125/408 (30%), Gaps = 74/408 (18%)

Query: 278 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 337
           D   S       M A D     S   +  L  LD  N+ +T ++          L  L  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
           ++NN+     S     TNL +L  + N+    +   ++  + L  L  + N L  K+   
Sbjct: 72  TSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL-TKLD-- 122

Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457
           +     L Y+    N L     ++      L  LD   N     L        +  +  S
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCS 178

Query: 458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 517
            N    ++          L  L+   N +   +   ++   QL+ L    N L     + 
Sbjct: 179 FN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT---EID 228

Query: 518 LCELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
           +  L QL   D S N L           TTLH   ++                       
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD----------------------- 265

Query: 577 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636
                      ++ +       + L        + I  +   + + T++  L+     +T
Sbjct: 266 -------LLEIDLTH------NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

Query: 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
             +    S    +  L L+N +L  ++   +     L+  S    ++ 
Sbjct: 311 -ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 81/507 (15%), Positives = 140/507 (27%), Gaps = 95/507 (18%)

Query: 234 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 293
             +       +     +       L  LD  N++I     ++    L  L   +N++  L
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 294 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL 353
           D            L  L   +N LT  +          L +L    N L     S     
Sbjct: 80  D------LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 413
             L +L    N    EI   +S  + L  L  + N  + K+   +   T+L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 414 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 473
           +     ++  Q   L  L+   NNI+  L                               
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLD--------------------------LNQN 211

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
             L  LD S N+L   I   V  L+QL++     N L     + +  L++L  L     +
Sbjct: 212 IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD 265

Query: 534 LHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 592
           L    +                    +                     + +     I  +
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELD-------------VTHNTQLYLLDCQAAGITEL 312

Query: 593 YQGKVLSLLSGLDLSCNKL----IGHIP---------------PQIGNLTRIQTLNLSHN 633
              +    L  L L+  +L    + H                   +G +  +     +  
Sbjct: 313 DLSQ-NPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEG 371

Query: 634 NLTGSIPSTFSNLK-----HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
                   T +N         + LD   N +N  I      +      ++ + NLS + P
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNP 429

Query: 689 EWKAQFATFNESSYEGNTFLCGLPLPI 715
                F + N +     T     P PI
Sbjct: 430 AVTYTFTSENGAIVGTVTTPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.7 bits (189), Expect = 9e-15
 Identities = 71/387 (18%), Positives = 118/387 (30%), Gaps = 54/387 (13%)

Query: 14  GFPHFKSLEHFDMDFTRI-----ALNTSFIALNTSFLQIIS---ESMPSLKYLSLSYYTL 65
           G      L         I     + NT+   L     ++ +     +  L YL+      
Sbjct: 59  GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDT--- 115

Query: 66  GTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125
             N    LD  +     L  L  A N L   +   +++ T L  LD   N+    I+   
Sbjct: 116 --NKLTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLD 165

Query: 126 LVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 185
           +   T +  L  S N     I+   +     L   N + N I  ++  + ++     QL 
Sbjct: 166 VTPQTQLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNIT-KLDLNQNI-----QLT 215

Query: 186 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA 245
            L  SSN                L Y D S   +  E         +KL TL  +   L 
Sbjct: 216 FLDCSSNKLTEIDVTPLT----QLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL 267

Query: 246 GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 305
               + +  + +L             + V     L  L      +  LD           
Sbjct: 268 ---EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD------LSQNP 318

Query: 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 365
            L  L L+N  LT E+          L+ L+  N ++Q   FS    +  L        +
Sbjct: 319 KLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQ 372

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLG 392
            +    ++L+  S    +  +     G
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (269), Expect = 1e-24
 Identities = 51/305 (16%), Positives = 105/305 (34%), Gaps = 49/305 (16%)

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
           ++      + N     +   + +    L +   ++++L  ++P        + +L+++ N
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ------ITVLEITQN 90

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
            L   +PE  A    +L++L   +N L   L        +L+ L ++ N+    +P+  +
Sbjct: 91  ALI-SLPELPA----SLEYLDACDNRLS-TLPEL---PASLKHLDVDNNQLT-MLPELPA 140

Query: 376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
               LE +  +NN L   +P    +L  L    + NN L   +P      +SL+ LD+S 
Sbjct: 141 ---LLEYINADNNQL-TMLPELPTSLEVL---SVRNNQLTF-LPE---LPESLEALDVST 189

Query: 436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 495
           N +  SLP+                   +          + +      NR+   IP+ + 
Sbjct: 190 NLLE-SLPAVP----------------VRNHHSE----ETEIFFRCRENRIT-HIPENIL 227

Query: 496 GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 555
            L     +IL  N L   +   L +                                 + 
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 556 SPDEQ 560
            P+ +
Sbjct: 288 FPENK 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 99.7 bits (248), Expect = 6e-22
 Identities = 61/400 (15%), Positives = 102/400 (25%), Gaps = 105/400 (26%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL-FSRNFNLT 354
           SI     N   L   +   N ++              +  AL   N    +   +   + 
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
               LQL        +P +L     +  L +  N+L   +P    +L  L      +N L
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNAL-ISLPELPASLEYLD---ACDNRL 112

Query: 415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 474
              +P       SL+ LD+ +N ++  LP                              +
Sbjct: 113 ST-LPELPA---SLKHLDVDNNQLT-MLPELP---------------------------A 140

Query: 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNN 533
            L  ++   N+L   +P+     + L  L + +N L       L      L+ LD+S N 
Sbjct: 141 LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-----FLPELPESLEALDVSTNL 191

Query: 534 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 593
           L   +P         E                                            
Sbjct: 192 LES-LPAVPVRNHHSEE------------------------------------------- 207

Query: 594 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 653
                          N+ I HIP  I +L    T+ L  N L+  I  + S         
Sbjct: 208 ------TEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 654 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ 693
                 +     Q        +                +Q
Sbjct: 261 GPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 2e-17
 Identities = 57/334 (17%), Positives = 100/334 (29%), Gaps = 72/334 (21%)

Query: 378 SSLEGLYLNNN--SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
            SL      N                 +    +   N  E    ++ C ++    L ++ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQ--ALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 436 NNISGSLPSCFHPLSIKQVHLSKNMLH---GQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
            N+S SLP    P  I  + +++N L               +SL  LD   NRL+ ++P+
Sbjct: 69  LNLS-SLPDNL-PPQITVLEITQNALISLPELP--------ASLEYLDACDNRLS-TLPE 117

Query: 493 WVDGLSQLSHLILGHNNLEGEVSVQLCEL-NQLQLLDLSNNNLHGPIPPCFDN-TTLHES 550
                + L HL + +N L       L EL   L+ ++  NN L   +P    +   L   
Sbjct: 118 ---LPASLKHLDVDNNQLT-----MLPELPALLEYINADNNQLTM-LPELPTSLEVLSVR 168

Query: 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 610
            +  +   E                                         L  LD+S N 
Sbjct: 169 NNQLTFLPEL-------------------------------------PESLEALDVSTNL 191

Query: 611 LIGHIPPQIGNLTRIQT----LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 666
           L   +P         +          N +T  IP    +L    ++ L +N L+ +I   
Sbjct: 192 LE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 667 LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNES 700
           L +      +       S    +         ++
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 73/445 (16%), Positives = 139/445 (31%), Gaps = 73/445 (16%)

Query: 96  SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS 155
           S+   + N  SL   +   N ++    +         E+  L        +SL      +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 156 RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS 215
           +          +   + ++   + P  Q+  L ++ N                     L 
Sbjct: 60  QFSELQLNRLNLS-SLPDN---LPP--QITVLEITQN--------------------ALI 93

Query: 216 HIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 275
            +      P         LE L   ++ L+    LP      L+ LDV NN +   +P  
Sbjct: 94  SL------PELP----ASLEYLDACDNRLS---TLP-ELPASLKHLDVDNNQLT-MLPEL 138

Query: 276 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 335
               L  +   NN +  L    P    +   L++L + NN LT  +PE       +L+ L
Sbjct: 139 PAL-LEYINADNNQLTML----PELPTS---LEVLSVRNNQLT-FLPELPE----SLEAL 185

Query: 336 ALSNNNLQG--HLFSRNFNLTNLQ-WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG 392
            +S N L+    +  RN +    + + +   NR    IP+++        + L +N L  
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 393 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIK 452
           +I   L   T       P  +    +           + D        +  S        
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS-------- 294

Query: 453 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---IPDWVDGLSQLSHLILGHNN 509
            V    +    +    TF      ++  +S    +G    +  W++ LS  + L      
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354

Query: 510 LEGEVSVQLCELNQLQLLDLSNNNL 534
           +  + +    +   L   +L    L
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 61/320 (19%), Positives = 106/320 (33%), Gaps = 63/320 (19%)

Query: 78  CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 137
           C +    EL +   +L  SLP  +     + +L+++ N L  S+   P     S+E L  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDA 107

Query: 138 SNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 197
            +N      +L  L   + LK  + +NN    ++T    L A    L  ++  +N     
Sbjct: 108 CDNRLS---TLPELP--ASLKHLDVDNN----QLTMLPELPA---LLEYINADNN----- 150

Query: 198 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 257
                           L+ +      P       T LE L + N+ L     LP    + 
Sbjct: 151 ---------------QLTML------PELP----TSLEVLSVRNNQLTFLPELP----ES 181

Query: 258 LRQLDVSNNNIRGHIPVKIGDV---LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
           L  LDVS N +   +P           +   F    N +   IP +  ++     + L +
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILED 239

Query: 315 NHLTGEIPEHLAVGC----VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 370
           N L+  I E L+        +   +  S ++ Q +   R        W        V +I
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 371 PQSLSKCSSLEGLYLNNNSL 390
             +              + L
Sbjct: 300 WHAFEHEEHANTFSAFLDRL 319

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 38/150 (25%), Positives = 54/150 (36%), Gaps = 23/150 (15%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANM 104
           L  + E   SLK+L +       N    L +       L+ +   +N L   LP      
Sbjct: 112 LSTLPELPASLKHLDVDN-----NQLTMLPELPAL---LEYINADNNQLT-MLP---ELP 159

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF-QIPISLEPLFN-YSRLKIFNA 162
           TSL +L V +NQLT  +   P     S+E L +S N    +P       +       F  
Sbjct: 160 TSLEVLSVRNNQLT-FLPELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 163 ENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
             N I   I E+   I       T+ L  N
Sbjct: 215 RENRIT-HIPEN---ILSLDPTCTIILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 22/155 (14%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANM 104
           L ++ E   SL+ LS+       N    L +   S   L+ L +++N L  SLP      
Sbjct: 152 LTMLPELPTSLEVLSVRN-----NQLTFLPELPES---LEALDVSTNLLE-SLPAVPVRN 202

Query: 105 TSLR----ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP---LFNYSRL 157
                         N++T  I  + ++ L     ++L +N    P+S      L   +  
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDN----PLSSRIRESLSQQTAQ 256

Query: 158 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
             ++           + ++L  P     T     N
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 47/257 (18%), Positives = 100/257 (38%), Gaps = 19/257 (7%)

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
                 + +  +   +P +         L      L   I +    G  +L+ + +S N+
Sbjct: 13  VFLCQESKVTEIPSDLPRN------AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 342 LQGHLFSRNF-NLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKIPR-WL 398
           +   + +  F NL  L  +++E    +  I  ++     +L+ L ++N  +   +P    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHK 124

Query: 399 GNLTRLQYIIMP-NNHLEGPIPVEFCQL-DSLQILDISDNNISGSLPSCFHPLSIKQVHL 456
            +  +   + +  N ++       F  L     IL ++ N I     S F+   + +++L
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 457 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVS 515
           S N    +L    F   S  V LD+S  R++ S+P +  + L +L        NL+   +
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR--ARSTYNLKKLPT 241

Query: 516 VQLCELNQLQLLDLSNN 532
           ++  +L  L    L+  
Sbjct: 242 LE--KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 54/244 (22%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFL 307
            +P    +   +L      +R  I          L     S N +   I +  F N+  L
Sbjct: 23  EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 308 QILDLSN-NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
             + +   N+L   I         NLQ+L +SN  ++        +      L ++ N  
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 367 VGEIPQSLSK--CSSLEGLYLNNNSLLGKIPRWLGNLTRL-QYIIMPNNHLEGPIPVE-F 422
           +  I ++           L+LN N +  +I     N T+L +  +  NN+LE  +P + F
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVF 198

Query: 423 CQLDSLQILDISDNNISGSLPSC-FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481
                  ILDIS   I  SLPS     L      L     +   K  T     +L+   L
Sbjct: 199 HGASGPVILDISRTRIH-SLPSYGLENLK----KLRARSTYNLKKLPTLEKLVALMEASL 253

Query: 482 SYNR 485
           +Y  
Sbjct: 254 TYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.2 bits (172), Expect = 5e-13
 Identities = 43/257 (16%), Positives = 79/257 (30%), Gaps = 44/257 (17%)

Query: 427 SLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
           +   L      +       F     ++++ +S+N +   ++   F N   L  + +    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 486 LNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFD 543
               I       L  L +L++ +  ++    V      Q  LLD+ +N     I    F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG--KVLSLL 601
             +                                  I       I  I+        L 
Sbjct: 151 GLS------------------------------FESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 602 SGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL 659
             L+LS N  +  +P  +    +    L++S   +  S+PS    NLK + +    N K 
Sbjct: 181 E-LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK- 237

Query: 660 NGKIP--HQLVELKTLE 674
             K+P   +LV L    
Sbjct: 238 --KLPTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 62/414 (14%), Positives = 113/414 (27%), Gaps = 98/414 (23%)

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF 366
           ++     + +T EIP  L     N   L      L+  +    F    +L+ +++  N  
Sbjct: 12  RVFLCQESKVT-EIPSDLPR---NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV 66

Query: 367 VGEIP-QSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQ 424
           +  I     S    L  + +   + L  I      NL  LQY+++ N  ++    V    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 425 LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS-LVTLDLSY 483
                +LDI DN    ++                          +F   S   V L L+ 
Sbjct: 127 SLQKVLLDIQDNINIHTIER-----------------------NSFVGLSFESVILWLNK 163

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 543
           N +   I +                                +L    NNNL       F 
Sbjct: 164 NGIQ-EIHNSA-----------------------FNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG--KVLSLL 601
             +                                  I + +   I  +     + L  L
Sbjct: 200 GAS-------------------------------GPVILDISRTRIHSLPSYGLENLKKL 228

Query: 602 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN-LKHVESLDLSNNKLN 660
                   K +    P +  L  +   +L++     S    F+N  + +  L    NK  
Sbjct: 229 RARSTYNLKKL----PTLEKLVALMEASLTYP----SHCCAFANWRRQISELHPICNKSI 280

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714
            +     +     +  S+A +N S     +   +  F+         +   P P
Sbjct: 281 LRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKP 334

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 52/357 (14%), Positives = 106/357 (29%), Gaps = 82/357 (22%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-----LFNYSRLKI 159
            +   L     +L   I          +E++ +S N   +   +E      L     ++I
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRI 86

Query: 160 FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 219
                N +                             +I P+   +  +L+Y+ +S+  +
Sbjct: 87  EK--ANNLL----------------------------YINPEAFQNLPNLQYLLISNTGI 116

Query: 220 NGEFPNWLLENNTKLETLFLV-NDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPV 274
               P+    ++ +   L +  N ++       F            L ++ N I+  I  
Sbjct: 117 K-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQ-EIH- 170

Query: 275 KIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 334
                                   S+F   +  ++    NN+L  E+P  +  G      
Sbjct: 171 -----------------------NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI 206

Query: 335 LALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK 393
           L +S   +   L S    NL  L+       +   ++P +L K  +L    L   S    
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPSHCCA 261

Query: 394 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
              W   ++ L  I    N       V++      Q   ++++N S          +
Sbjct: 262 FANWRRQISELHPI---CNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYT 315

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 49/260 (18%)

Query: 9   VVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTN 68
           V++   F  F  LE  ++    +      I  +  F      ++P L  + +       N
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDV---LEVIEADV-F-----SNLPKLHEIRIE----KAN 90

Query: 69  SSGTLDQGLCS-LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV 127
           +   ++      L +LQ L I++  ++        +     +LD+  N    +I  +  V
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 128 HLTS-IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
            L+     L L+ N                              I E H+      QL+ 
Sbjct: 151 GLSFESVILWLNKN-----------------------------GIQEIHNSAFNGTQLDE 181

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
           L+LS N     +     +       +D+S  +++   P++ LEN  KL      N     
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP 240

Query: 247 PFRLPIHSHKRLRQLDVSNN 266
                      L +  ++  
Sbjct: 241 TL----EKLVALMEASLTYP 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 23/222 (10%)

Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTN 355
           +P S       + LDLS N L   +  +       LQ L LS   +Q  +    + +L++
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 356 LQWLQLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
           L  L L GN  +  +     S  SSL+ L     +L       +G+L  L+ + + +N +
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 415 -EGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-----IKQVHLSKNMLHGQLKR 467
               +P  F  L +L+ LD+S N I  S+       L         + LS N ++  ++ 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 468 GTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 508
           G F     L  L L  N+L  S+PD + D L+ L  + L  N
Sbjct: 195 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 58/295 (19%), Positives = 88/295 (29%), Gaps = 87/295 (29%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDS 427
           +IP +L    S + L L+ N L         +   LQ + +    ++  I    +  L  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           L  L ++ N I  SL                         G F   SSL  L      L 
Sbjct: 78  LSTLILTGNPIQ-SLAL-----------------------GAFSGLSSLQKLVAVETNLA 113

Query: 488 GSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE----LNQLQLLDLSNNNLHGPIPPCF 542
            S+ ++    L  L  L + HN ++   S +L E    L  L+ LDLS+N +        
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 543 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 602
                                                                ++  L  
Sbjct: 170 RVLH-------------------------------------------------QMPLLNL 180

Query: 603 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
            LDLS N  +  I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 57/249 (22%), Positives = 81/249 (32%), Gaps = 74/249 (29%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 506
           P S K + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS LIL 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 507 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESYSNSSS-PDEQF 561
            N               +Q L              F        L    +N +S  +   
Sbjct: 85  GN--------------PIQSLA----------LGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 562 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-G 620
                                               L  L  L+++ N +     P+   
Sbjct: 121 GH----------------------------------LKTLKELNVAHNLIQSFKLPEYFS 146

Query: 621 NLTRIQTLNLSHNNLTGSIPS-TFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEV 675
           NLT ++ L+LS N +  SI       L  +     SLDLS N +N  I     +   L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 676 FSVAYNNLS 684
            ++  N L 
Sbjct: 205 LALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 61/291 (20%), Positives = 96/291 (32%), Gaps = 91/291 (31%)

Query: 81  VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
              + L ++ N LR    +   +   L++LD+S  ++  +I       L+ +  L+L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 141 YFQIPISLEP-LFNY-SRLKIFNAENNEIKAEITESHSLIAPKF----QLNTLSLSSNYG 194
             Q   SL    F+  S L+   A    +        SL          L  L+++ N  
Sbjct: 87  PIQ---SLALGAFSGLSSLQKLVAVETNLA-------SLENFPIGHLKTLKELNVAHN-- 134

Query: 195 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHS 254
                              +   K+   F N             L N             
Sbjct: 135 ------------------LIQSFKLPEYFSN-------------LTN------------- 150

Query: 255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
              L  LD+S+N I+  I      VL  + + N S                    LDLS 
Sbjct: 151 ---LEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDLSL 186

Query: 315 NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 364
           N +   I    A   + L+ LAL  N L+  +    F  LT+LQ + L  N
Sbjct: 187 NPMN-FIQPG-AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 53/289 (18%), Positives = 98/289 (33%), Gaps = 83/289 (28%)

Query: 53  PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRILD 111
            S K L LS+  L    S +      S   LQ L ++  +++ ++      +++ L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 112 VSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEI 171
           ++ N +  S++      L+S+++L+          SLE                      
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA---SLEN-------FPI----------- 120

Query: 172 TESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN 231
                L      L  L+++ N                     +   K+   F      N 
Sbjct: 121 ---GHLK----TLKELNVAHN--------------------LIQSFKLPEYF-----SNL 148

Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
           T LE L L ++ +     +     + L Q+ + N                SL +  N MN
Sbjct: 149 TNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNL---------------SLDLSLNPMN 190

Query: 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 340
            +    P +F  ++ L+ L L  N L   +P+ +     +LQ + L  N
Sbjct: 191 FIQ---PGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQ-ELYIASNDLRGSLPWCMANMTSLRI 109
           ++ +L++L LS   + +     L   L  +  L   L ++ N +   +         L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
           L + +NQL  S+       LTS++++ L  N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.7 bits (225), Expect = 4e-20
 Identities = 59/304 (19%), Positives = 88/304 (28%), Gaps = 17/304 (5%)

Query: 100 CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 159
           C  N +  +    S+    G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 160 FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQH-DLEYVDLSHIK 218
                  I + I      +     L  L+L +    G   P  L     DL  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 219 MNGEFPNWLLE----NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPV 274
                  WL E        L+ L +            +     L  LD+S+N   G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 275 KIGDV------LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 328
                      L  L + N  M    G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNN 388
              L  L LS   L+  +         L  L L  NR     P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 389 SLLG 392
             L 
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 64/363 (17%), Positives = 105/363 (28%), Gaps = 85/363 (23%)

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 345
           ++++ N L  +    +G  + L+ L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 346 LFS---RNFNLTNLQWLQLEGNRFVGEIPQSLSKCS--SLEGLYLNNNSLLGKIPRWLGN 400
           +     R   ++ LQ L LE     G  P  L + +   L  L L N S       WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 401 L-----TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH 455
           L       L+ + +   H       +     +L  LD+SDN   G               
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------------ 190

Query: 456 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 515
           L   +   +          +L  L L    +                         G  S
Sbjct: 191 LISALCPLKF--------PTLQVLALRNAGME---------------------TPSGVCS 221

Query: 516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE 575
                  QLQ LDLS+N+L         +     +  N S                    
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF------------------- 262

Query: 576 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635
               ++ +                 LS LDLS N+L     P    L ++  L+L  N  
Sbjct: 263 TGLKQVPKGLPAK------------LSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPF 308

Query: 636 TGS 638
             S
Sbjct: 309 LDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 55/321 (17%), Positives = 91/321 (28%), Gaps = 81/321 (25%)

Query: 373 SLSKCSSLEGLYLNNNSLLGKIPRW---LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 429
            + K  SL+ L +    +  +I      +  ++ LQ + + N  + G  P    +     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 430 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489
           +  ++  N+S +    +                  L     +    L  L ++       
Sbjct: 123 LNILNLRNVSWATRDAW------------------LAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 490 IPDWVDGLSQLSHLILGHNNLEGEV----SVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 545
             + V     LS L L  N   GE     ++   +   LQ+L L N  +  P   C    
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 605
                                                                  L GLD
Sbjct: 225 AA--------------------------------------------------RVQLQGLD 234

Query: 606 LSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664
           LS N L            +++ +LNLS   L        + L     LDLS N+L+   P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP 290

Query: 665 HQLVELKTLEVFSVAYNNLSG 685
               EL  +   S+  N    
Sbjct: 291 -SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 44/247 (17%), Positives = 77/247 (31%), Gaps = 34/247 (13%)

Query: 449 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW---VDGLSQLSHLIL 505
            S++ +    +      +        SL  L +   R+   I      V G+S L  L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 506 GHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFF 565
            +  + G     L E     L  L+  N+                 S ++      E+  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNV-----------------SWATRDAWLAELQQ 145

Query: 566 SIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP----PQIGN 621
            ++     L         F+ +      Q +V   LS LDLS N  +G            
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCE------QVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 622 LTRIQTLNLSHNNLT---GSIPSTFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEVFS 677
              +Q L L +  +    G   +  +    ++ LDLS+N L              L   +
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 678 VAYNNLS 684
           +++  L 
Sbjct: 260 LSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 45/281 (16%), Positives = 77/281 (27%), Gaps = 83/281 (29%)

Query: 42  TSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM 101
           T+   ++  + P L  L+L   +  T  +   +        L+ L IA           +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 102 ANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLK 158
               +L  LD+S N   G      +   +   +++ L L N   +   +   + +     
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME---TPSGVCS----- 221

Query: 159 IFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 218
                            +L A + QL  L LS N                L  ++LS   
Sbjct: 222 -----------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF-- 262

Query: 219 MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 278
                        T L+ +         P  LP     +L  LD+S N +          
Sbjct: 263 -------------TGLKQV---------PKGLP----AKLSVLDLSYNRLD--------- 287

Query: 279 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 319
                              P S   +  +  L L  N    
Sbjct: 288 -----------------RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN------LKHVES 651
           +S L  L L   ++ G  PP +   T      L+  N++ +    +           ++ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 652 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690
           L ++          Q+     L    ++ N   GE    
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 12/199 (6%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
            + +   +  +       +P  L        L+L+ N L       L   TRL  + +  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTF 470
             L   + V    L  L  LD+S N +  SLP     L  +  + +S N L   L  G  
Sbjct: 65  AELTK-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529
                L  L L  N L  ++P  +     +L  L L +NNL    +  L  L  L  L L
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 530 SNNNLHGPIPP-CFDNTTL 547
             N+L+  IP   F +  L
Sbjct: 180 QENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 365
              ++    +LT  +P  L     +   L LS N L            T L  L L+   
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQ 424
            + ++         L  L L++N L   +P     L  L  + +  N L   +P+     
Sbjct: 67  -LTKLQ-VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRG 122

Query: 425 LDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
           L  LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +L TL L 
Sbjct: 123 LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQ 180

Query: 483 YNRLNGSIPDWVDGLSQLSHLILGHN 508
            N L  +IP    G   L    L  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 10/183 (5%)

Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
                L L  + L       +  + RL QL++    +   + V     LP L   + S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 351
            L  S+P     +  L +LD+S N LT  +P     G   LQ L L  N L+  L     
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 352 -NLTNLQWLQLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM 409
                L+ L L  N    E+P  L +   +L+ L L  NSL   IP+       L +  +
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 410 PNN 412
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 47/233 (20%), Positives = 73/233 (31%), Gaps = 38/233 (16%)

Query: 230 NNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 288
                  +     +L   P  LP         L +S N +     +        L   N 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKD----TTILHLSENLLY-TFSLATLMPYTRLTQLNL 62

Query: 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 348
               L   +    G +  L  LDLS+N L   +P         L  L +S N L   L  
Sbjct: 63  DRAEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLT-SLPL 117

Query: 349 RNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
                L  LQ L L+GN       ++L                    P  L    +L+ +
Sbjct: 118 GALRGLGELQELYLKGNEL-----KTLP-------------------PGLLTPTPKLEKL 153

Query: 408 IMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459
            + NN+L   +P      L++L  L + +N++       F    +    L  N
Sbjct: 154 SLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 52/238 (21%), Positives = 77/238 (32%), Gaps = 50/238 (21%)

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
           S   ++    N++ +LP    P     +HLS+N+L       T    + L  L+L    L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL 67

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN- 544
              +      L  L  L L HN L+  + +    L  L +LD+S N L   +P       
Sbjct: 68  T-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGL 123

Query: 545 TTLHESY--SN--SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600
             L E Y   N   + P                                           
Sbjct: 124 GELQELYLKGNELKTLPPGLLT----------------------------------PTPK 149

Query: 601 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
           L  L L+ N L   +P  +   L  + TL L  N+L  +IP  F     +    L  N
Sbjct: 150 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 47/208 (22%), Positives = 75/208 (36%), Gaps = 47/208 (22%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
                L LS N L       +   ++L+ L L    L  ++ V    L  L  LDLS+N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 534 LHGPIPPCFDN----TTLHESYSN-SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKN 588
           L   +P         T L  S++  +S P                               
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR-------------------------- 121

Query: 589 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNL 646
                    L  L  L L  N+L   +PP +     +++ L+L++NNLT  +P+   + L
Sbjct: 122 --------GLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 647 KHVESLDLSNNKLNGKIPHQLVELKTLE 674
           +++++L L  N L   IP        L 
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
            + L+ L+L   +L   +    G L  + TL+LSHN L  S+P     L  +  LD+S N
Sbjct: 54  YTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 658 KLNGKIP----HQLVELKTLEVFSVAYNNLS 684
           +L   +P      L EL+ L    +  N L 
Sbjct: 111 RLT-SLPLGALRGLGELQEL---YLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRI 109
           ++P+L  L +S+  L +   G L      L  LQELY+  N+L+ +LP   +     L  
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEK 152

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
           L +++N LT  + +  L  L +++ L+L  N
Sbjct: 153 LSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 5e-18
 Identities = 58/433 (13%), Positives = 128/433 (29%), Gaps = 30/433 (6%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           + +    +  I+   P    D        N    ++  ++      +  +  +  +N+ +
Sbjct: 1   MGETITVSTPIKQIFPD---DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 377
              + + +     N+  L L+ N L         NL NL WL L+ N+ + ++  SL   
Sbjct: 56  K-SV-QGIQ-YLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDL 108

Query: 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 437
             L+ L L +N +   I   L +L +L+ + + NN +         +L  L  L + DN 
Sbjct: 109 KKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164

Query: 438 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 497
           IS  +        ++ ++LSKN +             +L  L+L          +    L
Sbjct: 165 IS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 498 SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF--------DNTTLHE 549
              + +     +L       + +    +  ++  +         F               
Sbjct: 221 VVPNTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

Query: 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 609
               +    E + + + ++G     + +               Y  K            N
Sbjct: 279 HGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN 338

Query: 610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 669
               ++      L  +     +   +  +    +             +    +       
Sbjct: 339 FNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLASHR 398

Query: 670 LKTLEVFSVAYNN 682
            K L V   A N 
Sbjct: 399 CKALTVDREARNG 411

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 51/288 (17%), Positives = 107/288 (37%), Gaps = 30/288 (10%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
           ++       +L         S T       L  + ++   ++D++ S+   +  + ++  
Sbjct: 18  DAFAETIKDNLK------KKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 69

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L ++ N+LT      PL +L ++  L L  N  +I   L  L +  +LK  + E+N I  
Sbjct: 70  LFLNGNKLT---DIKPLTNLKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGIS- 122

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
           +I     L     QL +L L +N          L     L+ + L   +++   P   L 
Sbjct: 123 DINGLVHLP----QLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LA 172

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFN 287
             TKL+ L+L  + ++      +   K L  L++ +            +  V  ++   +
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 288 NSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 334
            S+   +  S    +        L    N ++    + + +G    +F
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 2e-15
 Identities = 51/313 (16%), Positives = 105/313 (33%), Gaps = 75/313 (23%)

Query: 76  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
              +     +  +    +  ++      + S+  +  +++ +    S   + +L ++ +L
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70

Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 195
            L+ N  ++   ++PL N   L     + N+IK +++    L     +L +LSL  N   
Sbjct: 71  FLNGN--KL-TDIKPLTNLKNLGWLFLDENKIK-DLSSLKDLK----KLKSLSLEHNG-- 120

Query: 196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 255
                             +S I          L +  +LE+L+L N+ +       +   
Sbjct: 121 ------------------ISDING--------LVHLPQLESLYLGNNKITDI--TVLSRL 152

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
            +L  L + +N I                            I      +  LQ L LS N
Sbjct: 153 TKLDTLSLEDNQIS--------------------------DI-VPLAGLTKLQNLYLSKN 185

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
           H++ ++   LA G  NL  L L +        +   NL     ++          P+ +S
Sbjct: 186 HIS-DLRA-LA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 376 KCSSLEGLYLNNN 388
                E   +  +
Sbjct: 241 DDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 8e-15
 Identities = 52/327 (15%), Positives = 105/327 (32%), Gaps = 51/327 (15%)

Query: 380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
           +      +  +    P             +    +   +     +L+S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 440 GSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
            S+    +  ++ ++ L+ N    +L       N  +L  L L  N++   +   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 499 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 558
           +L  L L HN +  +++  L  L QL+ L L NN +   I      T L           
Sbjct: 110 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD-ITVLSRLTKLDT--------- 157

Query: 559 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 618
                  S+E +Q                 I+ I     L+ L  L LS N  I  +   
Sbjct: 158 ------LSLEDNQ-----------------ISDIVPLAGLTKLQNLYLSKNH-ISDLRA- 192

Query: 619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678
           +  L  +  L L          +  SNL    ++  ++  L    P  + +    E  +V
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNV 250

Query: 679 AYNNLSGEIPEWKAQFATFNESSYEGN 705
            ++            +        +  
Sbjct: 251 KWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 51/309 (16%), Positives = 110/309 (35%), Gaps = 54/309 (17%)

Query: 132 IEELMLSNNYFQIPIS-LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLS 190
           + E +  +     PI  + P   ++     N +   +   +T++         ++ +  +
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN-----SIDQIIAN 51

Query: 191 SNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL 250
           ++                    D+  ++         ++    +  LFL  + L      
Sbjct: 52  NS--------------------DIKSVQG--------IQYLPNVTKLFLNGNKLTDIK-- 81

Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
           P+ + K L  L +  N I+    +K    L SL + +N ++ ++G       ++  L+ L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESL 136

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 370
            L NN +T      L+     L  L+L +N +          LT LQ L L  N  + ++
Sbjct: 137 YLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL 190

Query: 371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 430
            ++L+   +L+ L L +   L K      NL     +   +  L  P  +        + 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG--DYEK 247

Query: 431 LDISDNNIS 439
            ++  +   
Sbjct: 248 PNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 8e-12
 Identities = 41/236 (17%), Positives = 81/236 (34%), Gaps = 30/236 (12%)

Query: 7   NGVVRSQGFPHFKSLEHFDMDFTRI------ALNTSFIALNTSFLQIIS----ESMPSLK 56
           + +   QG  +  ++    ++  ++          +   L     +I      + +  LK
Sbjct: 53  SDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLK 112

Query: 57  YLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ 116
            LSL +     N    ++ GL  L  L+ LY+ +N +       ++ +T L  L +  NQ
Sbjct: 113 SLSLEH-----NGISDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164

Query: 117 LTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHS 176
           ++      PL  LT ++ L LS N   I   L  L     L +    + E   +     S
Sbjct: 165 IS---DIVPLAGLTKLQNLYLSKN--HI-SDLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 177 LIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 232
            +      NT+  +       + P+ +    D E  ++             +    
Sbjct: 219 NL---VVPNTVKNTDGS---LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 268

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVG 368
             ++   +   IP        + Q L L   +L+  + S  F NL N+  + +  +  + 
Sbjct: 16  FRVTCKDIQ-RIPSLPP----STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 369 EIP-QSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEG-PIPVEFCQL 425
           ++   S    S +  + + N   L  I    L  L  L+++ + N  L+  P   +    
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 426 DSLQILDISDNNISGSLPS-CFHPLS--IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
           D   IL+I+DN    S+P   F  L      + L  N     ++    FN + L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNGTKLDAVYLN 187

Query: 483 YNRLNGSIPDWV-DGL-SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 532
            N+    I      G+ S  S L +   ++    ++    L  L+ L   N 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 40/265 (15%), Positives = 81/265 (30%), Gaps = 44/265 (16%)

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
           C+    +   ++  +I   +PS   P S + + L +  L   +    F N  ++  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 483 YNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIPP 540
            +     +       LS+++H+ + +      +     + L  L+ L + N  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL------ 117

Query: 541 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG---KV 597
                           PD      +S +         N          +  I       +
Sbjct: 118 -------------KMFPDLTK--VYSTDIFFILEITDN--------PYMTSIPVNAFQGL 154

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHV-ESLDLS 655
            +    L L  N     +     N T++  + L+ N     I    F  +      LD+S
Sbjct: 155 CNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 656 NNKLN---GKIPHQLVELKTLEVFS 677
              +     K    L EL     ++
Sbjct: 214 QTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 12/201 (5%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNH 316
            + L +   ++R  IP      LP++     S++     + S SF N+  +  +++ N  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHL--FSRNFNLTNLQWLQLEGNRFVGEIPQSL 374
               I          L+FL + N  L+      ++ ++      L++  N ++  IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 375 --SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHLEGPIPVEFCQLDS-LQI 430
               C+    L L NN     +  +  N T+L  + +  N +L       F  + S   +
Sbjct: 151 FQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 431 LDISDNNISGSLPS-CFHPLS 450
           LD+S  +++ +LPS     L 
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 43/290 (14%), Positives = 79/290 (27%), Gaps = 71/290 (24%)

Query: 377 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
           C   E   +    +  +IP    +   L+   +   HL       F  L ++  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 437 NISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-- 492
                L S  F+ L  +  + +        +          L  L +    L    PD  
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 493 WVDGLSQLSHLILGHNNLEGEVSVQLCE--LNQLQLLDLSNNNLHGPIPPC-FDNTTLHE 549
            V        L +  N     + V   +   N+   L L NN     +    F+ T L  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDA 183

Query: 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 609
                                                           + L        N
Sbjct: 184 ------------------------------------------------VYLNK------N 189

Query: 610 KLIGHIPPQI--GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSN 656
           K +  I      G  +    L++S  ++T ++PS    +LK + + +   
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 655
           L  +S + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 656 NNKLNGKIPHQ--LVELKTLEVFSVAYNNLSGEIPE 689
           N  L    P    +       +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 42/250 (16%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPW-CMAN 103
           +Q I    PS + L L    L T  S        +L ++  +Y++ +     L      N
Sbjct: 23  IQRIPSLPPSTQTLKLIETHLRTIPSHAFS----NLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
           ++ +  +++ + +    I    L  L  ++ L + N   ++   L  +++     I    
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
           +N     I   ++      +  TL L +N                      + ++    F
Sbjct: 139 DNPYMTSI-PVNAFQGLCNETLTLKLYNN--------------------GFTSVQ-GYAF 176

Query: 224 PNWLLENNTKLETLFLV-NDSLAGPFRLPIHS----HKRLRQLDVSNNNIRGHIPVKIGD 278
                 N TKL+ ++L  N  L     +   +    +     LDVS  ++   +P K  +
Sbjct: 177 ------NGTKLDAVYLNKNKYLT---VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLE 226

Query: 279 VLPSLYVFNN 288
            L  L   N 
Sbjct: 227 HLKELIARNT 236

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 85/492 (17%), Positives = 149/492 (30%), Gaps = 117/492 (23%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLF----NYSRLKIF 160
             ++ LD+   +L+ +  +  L  L   + + L +         + +         L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 161 NAENNEIKAEITE--SHSLIAPKFQLNTLSLSSN----YGDGFIFPKFLYHQHDLEYVDL 214
           N  +NE+           L  P  ++  LSL +      G G +    L     L+ + L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHL 120

Query: 215 SHIKMNGE----FPNWLLENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNN 266
           S   +           LL+   +LE L L   SL      P    + +    ++L VSNN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 267 NIRGHIPVK-IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
           +I     V+ +   L                      +   L+ L L +  +T +    L
Sbjct: 181 DI-NEAGVRVLCQGLKD--------------------SPCQLEALKLESCGVTSDNCRDL 219

Query: 326 AVG---CVNLQFLALSNNNLQG---HLFSRNFNLTN--LQWLQLEGNRF----VGEIPQS 373
                   +L+ LAL +N L               +  L+ L +          G++ + 
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYIIMPNNHLEGPIPVEFCQ---- 424
           L    SL+ L L  N L  +  R L         +L+ + + +           C     
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT----AACCSHFSS 335

Query: 425 ----LDSLQILDISDNNISGS----------LPSCFHPLSIKQVHLSKNMLHGQ------ 464
                  L  L IS+N +  +           P       ++ + L+   +         
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS----VLRVLWLADCDVSDSSCSSLA 391

Query: 465 --LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN 522
             L         SL  LDLS N L  +      G+ QL    +                 
Sbjct: 392 ATLL-----ANHSLRELDLSNNCLGDA------GILQLVES-VRQPG------------C 427

Query: 523 QLQLLDLSNNNL 534
            L+ L L +   
Sbjct: 428 LLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.5 bits (207), Expect = 5e-17
 Identities = 78/418 (18%), Positives = 135/418 (32%), Gaps = 56/418 (13%)

Query: 19  KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLC 78
             ++  D+    +         + +    +   +   + + L    L       +   L 
Sbjct: 3   LDIQSLDIQCEEL---------SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR 53

Query: 79  SLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLT----GSISSSPLVHL 129
               L EL + SN+L   G              ++ L + +  LT    G +SS+ L  L
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTL 112

Query: 130 TSIEELMLSNNYFQIP----ISLEPLFNYSRLKIFNAENNEIKAEITES-HSLIAPKFQL 184
            +++EL LS+N         +    L    RL+    E   + A   E   S++  K   
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 185 NTLSLSSNY-GDG---FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETL 237
             L++S+N   +     +          LE + L    +  +    L   + +   L  L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 238 FLVNDSL--AGPFRL---PIHSHKRLRQLDVSNNNIRGHIPVKIGDVL---PSLYVFNNS 289
            L ++ L   G   L    +H   RLR L +    I       +  VL    SL   + +
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 290 MNALDGSIPSSFGNM-----KFLQILDLSNNHLTGEIPEHLAVG---CVNLQFLALSNNN 341
            N L                  L+ L + +   T     H +        L  L +SNN 
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 342 LQG---HLFSR--NFNLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSL 390
           L+        +      + L+ L L            +  +L    SL  L L+NN L
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 72/431 (16%), Positives = 128/431 (29%), Gaps = 101/431 (23%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLE 362
           +Q LD+    L+      L       Q + L +  L       + S       L  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 363 GNRFVGEIPQSLSKC-----SSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNH 413
            N         + +        ++ L L N  L G     +   L  L  LQ + + +N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 414 LEGPIPVEFCQLD-----SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 468
           L        C+        L+ L +   ++S    +   PL+        ++L       
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLA--------SVLR------ 167

Query: 469 TFFNCSSLVTLDLSYNRLNGS-IPDWVDGLS----QLSHLILGHNNLEGEVSVQLCEL-- 521
                     L +S N +N + +     GL     QL  L L    +  +    LC +  
Sbjct: 168 ---AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 522 --NQLQLLDLSNNNLH---------GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570
               L+ L L +N L          G + P     TL                       
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----------------- 267

Query: 571 QGFLEKQNHEIFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKL----IGHIPPQIGN-LTR 624
                         T K    + +  +    L  L L+ N+L       +   +     +
Sbjct: 268 -------------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 625 IQTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-----KTLEV 675
           +++L +   + T        S  +  + +  L +SNN+L      +L +        L V
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 676 FSVAYNNLSGE 686
             +A  ++S  
Sbjct: 375 LWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 73/469 (15%), Positives = 133/469 (28%), Gaps = 104/469 (22%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----GSIPSSFGNMKFLQILDLS 313
           ++ LD+    +      ++  +L    V       L       I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 314 NNHLTGE----IPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLEGNR 365
           +N L       + + L      +Q L+L N  L     G L S    L  LQ L L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 366 FVGEIPQSLSK-----CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
                 Q L +        LE L L   SL       L ++                   
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV------------------- 165

Query: 421 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
                   + L +S+N+I+ +                  +L   LK     +   L  L 
Sbjct: 166 -LRAKPDFKELTVSNNDINEA---------------GVRVLCQGLKD----SPCQLEALK 205

Query: 481 LSYNRLN----GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-----LNQLQLLDLSN 531
           L    +       +   V   + L  L LG N L      +LC       ++L+ L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK---QNHEIFEFTTKN 588
             +                        +       +   +  L++     +E+ +   + 
Sbjct: 266 CGIT----------------------AKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 589 IAYIYQGKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644
           +      +    L  L +           H    +     +  L +S+N L  +      
Sbjct: 304 LCETLL-EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 645 N-LKHV----ESLDLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLS 684
             L         L L++  ++      +   L+   +L    ++ N L 
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 78/425 (18%), Positives = 138/425 (32%), Gaps = 62/425 (14%)

Query: 12  SQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESM----PSLKYLSLSYYTLGT 67
           S       +L   ++    +             +  + + +      ++ LSL    L  
Sbjct: 49  SSALRVNPALAELNLRSNEL---------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99

Query: 68  NSSGTLDQGLCSLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLT---- 118
              G L   L +L  LQEL+++ N L   G    C         L  L +    L+    
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 119 GSISSSPLVHLTSIEELMLSNNYFQ----IPISLEPLFNYSRLKIFNAENNEIKAEITES 174
             ++S  L      +EL +SNN         +      +  +L+    E+  + ++    
Sbjct: 160 EPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 175 -HSLIAPKFQLNTLSLSSNY----GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL-- 227
              ++A K  L  L+L SN     G   + P  L+    L  + +    +  +    L  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 228 -LENNTKLETLFLVNDSL--AGPFRL---PIHSHKRLRQLDVSNNNIRGHIPVKIGDVL- 280
            L     L+ L L  + L   G   L    +    +L  L V + +           VL 
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338

Query: 281 --PSLYVFNNSMNALDGSIPSSFG-----NMKFLQILDLSNNHLTGEIPEHLA---VGCV 330
               L     S N L+ +               L++L L++  ++      LA   +   
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 331 NLQFLALSNNNLQ---GHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 385
           +L+ L LSNN L          +       L+ L L    +  E+         L+ L  
Sbjct: 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM------EDRLQALEK 452

Query: 386 NNNSL 390
           +  SL
Sbjct: 453 DKPSL 457

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 65/375 (17%), Positives = 116/375 (30%), Gaps = 65/375 (17%)

Query: 12  SQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESM----PSLKYLSLSYYTLGT 67
           S       +L+   +    +           + LQ++ E +      L+ L L Y +L  
Sbjct: 106 SSTLRTLPTLQELHLSDNLL---------GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156

Query: 68  NSSGTLDQGLCSLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLTG--- 119
            S   L   L +    +EL +++ND+   G    C     +   L  L + S  +T    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 120 SISSSPLVHLTSIEELMLSNNYFQ----IPISLEPLFNYSRLKIFNAENNEIKAEITESH 175
                 +    S+ EL L +N         +    L   SRL+        I A+     
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK---GC 273

Query: 176 SLIAPKFQLNT----LSLSSNY----GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL 227
             +    +       LSL+ N     G   +    L     LE + +          +  
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333

Query: 228 ---LENNTKLETLFLVNDSLAGP-----FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
              L  N  L  L + N+ L         +        LR L +++ ++       +   
Sbjct: 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393

Query: 280 LPS------LYVFNNSM-----NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 328
           L +      L + NN +       L  S+         L+ L L + + + E        
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQ---PGCLLEQLVLYDIYWSEE-------M 443

Query: 329 CVNLQFLALSNNNLQ 343
              LQ L     +L+
Sbjct: 444 EDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 47/295 (15%), Positives = 82/295 (27%), Gaps = 62/295 (21%)

Query: 427 SLQILDISDNNIS--GSLPSCFHPLSIKQVHLSKNMLHGQ--------LKRGTFFNCSSL 476
            +Q LDI    +S              + V L    L           L+        +L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-----VNPAL 58

Query: 477 VTLDLSYNRLNGS-IPDWVDGLS----QLSHLILGHNNLEGEVSVQLCEL----NQLQLL 527
             L+L  N L    +   + GL     ++  L L +  L G     L         LQ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 528 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF-LEKQNHEIFEFTT 586
            LS+N L                       D   ++           LEK   E    + 
Sbjct: 119 HLSDNLLG----------------------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156

Query: 587 KNIAYIYQG-KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHNNLT---- 636
            +   +    +       L +S N +       +      +  +++ L L    +T    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 637 GSIPSTFSNLKHVESLDLSNNKLNGK-----IPHQLVELKTLEVFSVAYNNLSGE 686
             +    ++   +  L L +NKL         P  L     L    +    ++ +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
           L  + + N ++  L G           ++ L ++N H T      ++ G  NL+ L +  
Sbjct: 46  LTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399
            ++          LT+L  L +  +     I   ++    +  + L+ N  +  I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
            L  L+ + +  + +     +E      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 30/189 (15%), Positives = 69/189 (36%), Gaps = 32/189 (16%)

Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359
           +   M  L  + L+N ++T ++   +     N++ L ++N +     ++    L+NL+ L
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 419
           ++ G     +   +LS  +SL  L +++++    I   +  L ++  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 420 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479
                L  L+ L+I  + +       +  +                      +   L  L
Sbjct: 154 -PLKTLPELKSLNIQFDGVHD-----YRGIE---------------------DFPKLNQL 186

Query: 480 DLSYNRLNG 488
                 + G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
            + +L ++ L     V ++   +    +++ L +NN       P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF 470
             +          L SL +LDIS +    S+ +  + L  +  + LS N     +     
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PL 155

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 513
                L +L++ ++ ++      ++   +L+ L      + G+
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 32/243 (13%), Positives = 70/243 (28%), Gaps = 84/243 (34%)

Query: 419 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478
            +   Q++SL  + +++ N++           +    +                  ++  
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLT--GIE--------------YAHNIKD 70

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538
           L ++        P  + GLS L  L +   ++  +    L  L  L LLD+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 598
               +                                                      L
Sbjct: 129 LTKINT-----------------------------------------------------L 135

Query: 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
             ++ +DLS N  I  I P +  L  +++LN+  + +         +   +  L   +  
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 659 LNG 661
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 7   NGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLG 66
             V    G  +  +++   ++       T++  +           + +L+ L +     G
Sbjct: 54  INVTDLTGIEYAHNIKDLTINNIHA---TNYNPI---------SGLSNLERLRIM----G 97

Query: 67  TNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 126
            + +      L  L  L  L I+ +    S+   +  +  +  +D+S N     I   PL
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPL 155

Query: 127 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 167
             L  ++ L +  +   +      + ++ +L    A +  I
Sbjct: 156 KTLPELKSLNIQFD--GV-HDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
           N +IPD         + +LG ++     ++   ++N L  + L+N N+            
Sbjct: 14  NVNIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT----------- 57

Query: 547 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                               + G +      N +       +         LS L  L +
Sbjct: 58  -------------------DLTGIEYA---HNIKDLTINNIHATNYNPISGLSNLERLRI 95

Query: 607 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 666
               +     P +  LT +  L++SH+    SI +  + L  V S+DLS N     I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 667 LVELKTLEVFSVAYNNLS 684
           L  L  L+  ++ ++ + 
Sbjct: 155 LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLSGEI 687
             +  I  ++  L  +    ++YN    +I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/168 (17%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 101 MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 160
            A M SL  + +++  +T     + + +  +I++L ++N +     +  P+   S L+  
Sbjct: 40  EAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERL 93

Query: 161 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 220
                ++ ++   +   ++    L  L +S +  D  I  K +     +  +DLS+    
Sbjct: 94  RIMGKDVTSDKIPN---LSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149

Query: 221 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNI 268
            +     L+   +L++L +  D +       I    +L QL   +  I
Sbjct: 150 TDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 27/152 (17%), Positives = 61/152 (40%), Gaps = 14/152 (9%)

Query: 41  NTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC 100
            +S   I    M SL Y++L+   +   +      G+    ++++L I +       P  
Sbjct: 32  QSSTANITEAQMNSLTYITLANINVTDLT------GIEYAHNIKDLTINNIHATNYNP-- 83

Query: 101 MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 160
           ++ +++L  L +    +T S     L  LTS+  L +S++       L  +    ++   
Sbjct: 84  ISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSI 141

Query: 161 NAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
           +   N    +I    +L     +L +L++  +
Sbjct: 142 DLSYNGAITDIMPLKTLP----ELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
           +   + LE L ++   +       +     L  LD+S++     I  KI   LP +   +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQG 344
            S N     I      +  L+ L++  + +      E        L  L   +  + G
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647
           + A I + + ++ L+ + L+    +  +   I     I+ L +++ + T    +  S L 
Sbjct: 34  STANITEAQ-MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLS 88

Query: 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
           ++E L +    +       L  L +L +  ++++     I  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 426
            +PQSL   S    L L++N+L      W    LT L  +++ +NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 427 SLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           +L+ LD+S N++  +L    F  L +++ + L  N +   + R  F + + L  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 485 RLNGSIPDWV----DGLSQLSHLILGHNNLEGEVSVQLCELNQLQL--LDLSNNNLH 535
           +++   P  +    + L +L  L L  N L+      L +L       L L NN L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 365
             +LDLS+N+L+    E       NL  L LS+N+L   + S  F  + NL++L L  N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVE--- 421
                    S   +LE L L NN  +  + R    ++ +LQ + +  N +    PVE   
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK 157

Query: 422 -FCQLDSLQILDISDNNISGSLPSCFHPLS---IKQVHLSKNMLH 462
              +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 655
           +  L  LDLS N L   +   +  +L  ++ L L +N++   +    F ++  ++ L LS
Sbjct: 87  VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS 144

Query: 656 NNKLNGKIPHQ----LVELKTLEVFSVAYNNLS 684
            N+++ + P +      +L  L +  ++ N L 
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 47/222 (21%), Positives = 73/222 (32%), Gaps = 49/222 (22%)

Query: 472 NCS-SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDL 529
           NC  +   L  S  +L  ++P  +   S  + L L HNNL           L  L  L L
Sbjct: 15  NCLCASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL 71

Query: 530 SNNNLHGPIPPC-FDN----TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 584
           S+N+L+  I    F        L  S ++                    L   +  +F  
Sbjct: 72  SHNHLNF-ISSEAFVPVPNLRYLDLSSNH--------------------LHTLDEFLFSD 110

Query: 585 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTF 643
                           L  L L  N  I  +      ++ ++Q L LS N ++       
Sbjct: 111 LQA-------------LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 644 SN---LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
            +   L  +  LDLS+NKL       L +L       +  +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 604 LDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLN 660
           LDLS N  +  +  +     LT + +L LSHN+L   I S  F  + ++  LDLS+N L+
Sbjct: 44  LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 661 GKIPHQLVELKTLEVFSVAYNNLS 684
                   +L+ LEV  +  N++ 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 53  PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM-ANMTSLRILD 111
                L LS+  L    +      L    +L  L ++ N L   +       + +LR LD
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRL---TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 112 VSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-LFNY-SRLKIFNAENNEIKA 169
           +SSN L  ++       L ++E L+L NN   I + ++   F   ++L+      N+I  
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNN--HI-VVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 170 EITESHSLIAPKFQLNTLSLSSN 192
              E         +L  L LSSN
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 14/90 (15%)

Query: 602 SGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKHVESLDLSNNK 658
           +   LSC  + + ++P  + + T    L+LSHNNL+  + +  T + L ++ SL LS+N 
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYT--ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 659 LNGKIP----HQLVELKTLEVFSVAYNNLS 684
           LN  I       +  L+ L+   ++ N+L 
Sbjct: 76  LN-FISSEAFVPVPNLRYLD---LSSNHLH 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPW----CMANMT 105
             + +L+ L L    +        +     +  LQ+LY++ N +    P         + 
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQIS-RFPVELIKDGNKLP 163

Query: 106 SLRILDVSSNQLTGSISSSPLVHLTSI--EELMLSNN 140
            L +LD+SSN+L   +  + L  L +     L L NN
Sbjct: 164 KLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 39/252 (15%), Positives = 91/252 (36%), Gaps = 21/252 (8%)

Query: 303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 362
            +     +    +++T  + +        +  L+     +          L NL  L+L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 422
            N+ + ++   L   + +  L L+ N L       +  L  ++ + + +  +    P   
Sbjct: 72  DNQ-ITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDL 481
             L +LQ+L +  N I+ ++       +++ + +       Q+   T   N S L TL  
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLKA 180

Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 541
             N+++  I   +  L  L  + L +N +       L   + L ++ L+N  +       
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 542 FDNTTLHESYSN 553
            +N  +      
Sbjct: 237 NNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 51/290 (17%)

Query: 102 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 161
             + +   +    + +T    +     L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 162 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 221
            ++N+I  ++    +L     ++  L LS N                     L ++    
Sbjct: 70  LKDNQIT-DLAPLKNLT----KITELELSGNP--------------------LKNVSA-- 102

Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
                 +     ++TL L +  +      P+     L+ L +  N I    P+     L 
Sbjct: 103 ------IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
            L + N  ++ L         N+  L  L   +N ++ +I         NL  + L NN 
Sbjct: 155 YLSIGNAQVSDLTP-----LANLSKLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQ 206

Query: 342 LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 391
           +     S   N +NL  + L       +     +       +   + + +
Sbjct: 207 ISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 54/308 (17%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
            ++ +   ++         S+ T       L  +  L      +  ++   +  + +L  
Sbjct: 16  PALANAIKIAAG------KSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIG 67

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L++  NQ+T     +PL +LT I EL LS N  +   ++  +     +K  +  + +I  
Sbjct: 68  LELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT- 120

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
           ++T    L      L  L L  N                     +++I          L 
Sbjct: 121 DVTPLAGLS----NLQVLYLDLN--------------------QITNISP--------LA 148

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289
             T L+ L + N  ++     P+ +  +L  L   +N I    P+     L  +++ NN 
Sbjct: 149 GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206

Query: 290 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR 349
           ++ +     S   N   L I+ L+N  +T +   +     V       S   +     S 
Sbjct: 207 ISDV-----SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

Query: 350 NFNLTNLQ 357
           N    +  
Sbjct: 262 NGTYASPN 269

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 51/312 (16%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
            L N   +    +     +    +    +  L       +  I   +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT-GVTTIEG-VQYLNNLIGLELKD 72

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 471
           N +    P++   L  +  L++S N +  ++ +     SIK + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             S+L  L L  N++    P  + GL+ L +L +G+  +       L  L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N +   I P      L E +  +                       N          I+ 
Sbjct: 183 NKISD-ISPLASLPNLIEVHLKN-----------------------NQ---------ISD 209

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKHVE 650
           +      S L  + L+   +         NL      N+        I P+T S+     
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIAPATISDNGTYA 266

Query: 651 SLDLSNNKLNGK 662
           S +L+ N  +  
Sbjct: 267 SPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 49/277 (17%)

Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457
              L     I    +++   +      LD +  L      ++ ++    +  ++  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 458 KNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV 516
            N    Q+       N + +  L+LS N L  ++   + GL  +  L L    +      
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD--VT 123

Query: 517 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
            L  L+ LQ+L L  N +   I P    T L                             
Sbjct: 124 PLAGLSNLQVLYLDLNQITN-ISPLAGLTNL----------------------------- 153

Query: 577 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636
              +        ++ +     LS L+ L    NK I  I P + +L  +  ++L +N ++
Sbjct: 154 ---QYLSIGNAQVSDLTPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQIS 208

Query: 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 673
              P   +N  ++  + L+N  +  +       L   
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 50/289 (17%)

Query: 124 SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 183
            P   L +  ++    +   +        +   +   +A    +   I     L      
Sbjct: 13  FPDPALANAIKIAAGKS--NV-TDTVTQADLDGITTLSAFGTGVT-TIEGVQYLN----N 64

Query: 184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 243
           L  L L  N                     ++ +          L+N TK+  L L  + 
Sbjct: 65  LIGLELKDN--------------------QITDLAP--------LKNLTKITELELSGNP 96

Query: 244 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 303
           L       I   + ++ LD+++  I    P+     L  LY+  N +  +     S    
Sbjct: 97  LKNVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAG 149

Query: 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363
           +  LQ L + N  ++   P  LA     L  L   +N +     S   +L NL  + L+ 
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LA-NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412
           N+     P  L+  S+L  + L N ++  +   +  NL     +  P+ 
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 49/269 (18%), Positives = 98/269 (36%), Gaps = 30/269 (11%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
             +  +  LS     + T        G+  L +L  L +  N +    P  + N+T +  
Sbjct: 38  ADLDGITTLSAFGTGVTTIE------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L++S N L    + S +  L SI+ L L++        + PL   S L++   + N+I  
Sbjct: 90  LELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQIT- 142

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
            I+    L      L  LS+ +           L +   L  +     K++   P   L 
Sbjct: 143 NISPLAGLT----NLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDISP---LA 192

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289
           +   L  + L N+ ++     P+ +   L  + ++N  I         +++    V   S
Sbjct: 193 SLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPS 250

Query: 290 MNALDGSIPSSFGNMKFLQILDLSNNHLT 318
              +    P++  +       +L+ N  +
Sbjct: 251 GAPIA---PATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 39/214 (18%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLS 530
             ++ + +    + +  ++      L  ++ L      +    +++ +  LN L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 590
           +N +   + P  + T + E   + +           ++        Q+ +  + T+  I 
Sbjct: 72  DNQITD-LAPLKNLTKITELELSGNP----------LKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
            +     LS L  L L  N+ I +I P +  LT +Q L++ +  ++   P   +NL  + 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 651 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           +L   +NK++  I   L  L  L    +  N +S
Sbjct: 177 TLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 41/190 (21%)

Query: 495 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 554
             L+    +  G +N+   V+    +L+ +  L      +                    
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT------------------- 54

Query: 555 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 614
                      +IEG Q      N    E     I  +   K L+ ++ L+LS N  + +
Sbjct: 55  -----------TIEGVQYL---NNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKN 99

Query: 615 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 674
           +   I  L  I+TL+L+   +T   P   + L +++ L L  N++    P  L  L  L+
Sbjct: 100 VSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154

Query: 675 VFSVAYNNLS 684
             S+    +S
Sbjct: 155 YLSIGNAQVS 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.2 bits (183), Expect = 9e-15
 Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 33/235 (14%)

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLAVGCVNLQFLALSNNNLQ 343
           N ++   DG + S   N      +D S+  LT     IP        + + L L +N L 
Sbjct: 1   NEALCKKDGGVCSCNNNKN---SVDCSSKKLTAIPSNIP-------ADTKKLDLQSNKLS 50

Query: 344 GHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPRW 397
             L S+ F  LT L+ L L  N+      Q+L      +  +LE L++ +N L       
Sbjct: 51  -SLPSKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQALPIGV 104

Query: 398 LGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPS-CFHPL-SIKQV 454
              L  L  + +  N L+  +P   F  L  L  L +  N +  SLP   F  L S+K++
Sbjct: 105 FDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 508
            L  N L  ++  G F   + L TL L  N+L   +P+   D L +L  L L  N
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRG 468
           +N L       F +L  L++L ++DN +  +LP+  F  L  ++ + ++ N L   L  G
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIG 103

Query: 469 TFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQL 526
            F    +L  L L  N+L  S+P  V D L++L++L LG+N L+  +   + + L  L+ 
Sbjct: 104 VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161

Query: 527 LDLSNNNLHGPIPPCFDNTT 546
           L L NN L       FD  T
Sbjct: 162 LRLYNNQLKRVPEGAFDKLT 181

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 53/221 (23%), Positives = 80/221 (36%), Gaps = 52/221 (23%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 506
           P   K++ L  N L   L    F   + L  L L+ N+L  ++P  +   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 507 HNNLEGEVSVQ---LCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESYSN-SSSP 557
            N L+   ++      +L  L  L L  N L   +PP  FD+    T L   Y+   S P
Sbjct: 94  DNKLQ---ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP 617
              F+                                   L+ L  L L  N+L   +P 
Sbjct: 150 KGVFD----------------------------------KLTSLKELRLYNNQL-KRVPE 174

Query: 618 QI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
                LT ++TL L +N L       F +L+ ++ L L  N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRI 109
            + +L+ L ++   L     G  DQ    LV+L EL +  N L+ SLP     ++T L  
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQ----LVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNY-SRLKIFNAENNEIK 168
           L +  N+L  S+       LTS++EL L NN  Q+    E  F+  + LK    +NN++K
Sbjct: 138 LSLGYNELQ-SLPKGVFDKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDNNQLK 194

Query: 169 AEITESHSLIAPKFQLNTLSLSSN 192
                         +L  L L  N
Sbjct: 195 ---RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 70/224 (31%)

Query: 474 SSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLC-ELNQLQLLDLSN 531
           +    LDL  N+L+ S+P      L++L  L L  N L+  +   +  EL  L+ L +  
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV-T 93

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           +N    +P                                         +F+        
Sbjct: 94  DNKLQALPI---------------------------------------GVFDQLVN---- 110

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHV 649
                    L+ L L  N+ +  +PP++  +LT++  L+L +N L  S+P   F  L  +
Sbjct: 111 ---------LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159

Query: 650 ESLDLSNNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 689
           + L L NN+L  ++P     +L ELKTL++     NN    +PE
Sbjct: 160 KELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 54  SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRILDV 112
             K L L    L +  S         L  L+ LY+  N L+ +LP      + +L  L V
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFH----RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92

Query: 113 SSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-LF-NYSRLKIFNAENNEIKAE 170
           + N+L  ++       L ++ EL L  N  +   SL P +F + ++L   +   NE++  
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQ-- 146

Query: 171 ITESHSLIAPKF----QLNTLSLSSN 192
                SL    F     L  L L +N
Sbjct: 147 -----SLPKGVFDKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 54/222 (24%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-LFNY-SRLKIFNA 162
              + LD+ SN+L+ S+ S     LT +  L L++N  Q   +L   +F     L+    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 163 ENNEIKAEITESHSLIAPKF----QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 218
            +N+++       +L    F     L  L L  N                     L  + 
Sbjct: 93  TDNKLQ-------ALPIGVFDQLVNLAELRLDRN--------------------QLKSL- 124

Query: 219 MNGEFPNWLLENNTKLETLFLVNDSL----AGPF-RLPIHSHKRLRQLDVSNNNIRGHIP 273
                P  + ++ TKL  L L  + L     G F +L       L++L + NN ++  +P
Sbjct: 125 -----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-----SLKELRLYNNQLK-RVP 173

Query: 274 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
               D L  L       N L      +F +++ L++L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 17/237 (7%)

Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358
            +   +  +  +  +N+ +   + + +     N+  L L+ N L         NL NL W
Sbjct: 40  VTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNGNKLTD--IKPLANLKNLGW 94

Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 418
           L L+ N+ V ++  SL     L+ L L +N +       L +L +L+ + + NN +    
Sbjct: 95  LFLDENK-VKDL-SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDIT 150

Query: 419 PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478
            +   +L  L  L + DN IS  +        ++ ++LSKN +             +L  
Sbjct: 151 VLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDV 204

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
           L+L          +    L   + +     +L       + +    +  ++  +   
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 49/315 (15%), Positives = 104/315 (33%), Gaps = 75/315 (23%)

Query: 76  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
              +     +  +    +  ++      + S+  +  +++ +    S   + +L ++ +L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 195
            L+ N  ++   ++PL N   L     + N++K +++    L     +L +LSL  N   
Sbjct: 74  FLNGN--KL-TDIKPLANLKNLGWLFLDENKVK-DLSSLKDLK----KLKSLSLEHNG-- 123

Query: 196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 255
                             +S I          L +  +LE+L+L N+ +       +   
Sbjct: 124 ------------------ISDING--------LVHLPQLESLYLGNNKITDI--TVLSRL 155

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
            +L  L + +N I                            I      +  LQ L LS N
Sbjct: 156 TKLDTLSLEDNQIS--------------------------DI-VPLAGLTKLQNLYLSKN 188

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
           H++ ++      G  NL  L L +        +   NL     ++      V   P+ +S
Sbjct: 189 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 376 KCSSLEGLYLNNNSL 390
                E   +  +  
Sbjct: 244 DDGDYEKPNVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 49/288 (17%)

Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457
                      +    +   +     +L+S+  +  ++++I  S+    +  ++ ++ L+
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLN 76

Query: 458 KNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV 516
            N    +L       N  +L  L L  N++   +   +  L +L  L L HN +  +++ 
Sbjct: 77  GN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DING 129

Query: 517 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
            L  L QL+ L L NN +   I      T L                  S+E +Q     
Sbjct: 130 -LVHLPQLESLYLGNNKITD-ITVLSRLTKLDT---------------LSLEDNQ----- 167

Query: 577 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636
                       I+ I     L+ L  L LS N  I  +   +  L  +  L L      
Sbjct: 168 ------------ISDIVPLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECL 213

Query: 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
               +  SNL    ++  ++  L    P  + +    E  +V ++   
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 50/288 (17%), Positives = 107/288 (37%), Gaps = 30/288 (10%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
           ++       +L         S T       L  + ++   ++D++ S+   +  + ++  
Sbjct: 21  DAFAETIKDNLK------KKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 72

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L ++ N+LT      PL +L ++  L L  N  ++   L  L +  +LK  + E+N I  
Sbjct: 73  LFLNGNKLT---DIKPLANLKNLGWLFLDEN--KV-KDLSSLKDLKKLKSLSLEHNGIS- 125

Query: 170 EITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLE 229
           +I     L     QL +L L +N          L     L+ + L   +++   P   L 
Sbjct: 126 DINGLVHLP----QLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LA 175

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFN 287
             TKL+ L+L  + ++      +   K L  L++ +            +  V  ++   +
Sbjct: 176 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 288 NSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 334
            S+   +  S    +        L    N ++    + + +G    +F
Sbjct: 234 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 16/212 (7%)

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
           ++    +  LFL  + L      P+ + K L  L +  N ++    +K    L SL + +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
           N ++ ++G       ++  L+ L L NN +T      L+     L  L+L +N +     
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--I 171

Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
                LT LQ L L  N  + ++ ++L+   +L+ L L +   L K      NL     +
Sbjct: 172 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
              +  L  P  +        +  ++  +   
Sbjct: 230 KNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 23/229 (10%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLS 530
             +  +  +L    +  ++    + L+ +  +I  +++++   SVQ +  L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 590
            N L   I P  +   L   + + +           ++      + +  +        I+
Sbjct: 77  GNKLTD-IKPLANLKNLGWLFLDENK----------VKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
            I     L  L  L L  NK I  I   +  LT++ TL+L  N ++  I    + L  ++
Sbjct: 126 DINGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ 181

Query: 651 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE 699
           +L LS N ++      L  LK L+V  +       +    ++     N 
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 15/255 (5%)

Query: 431 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 490
               ++ +           S  Q          +           L   +LS  +    +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550
              ++   +L  L   +      + + +  L+ L     +              +TL   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAV 414

Query: 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 610
               ++  +     F +E     +E  +  +     K++  +   + L L++ LDLS N+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVE 669
           L   +PP +  L  ++ L  S N L  ++    +NL  ++ L L NN+L        LV 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 670 LKTLEVFSVAYNNLS 684
              L + ++  N+L 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 9e-12
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)

Query: 12  SQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSG 71
            +   +F +L+   +D  R A      +       ++      ++ L L++  L      
Sbjct: 402 KETLQYFSTLKA--VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL------ 453

Query: 72  TLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 131
           T+   L  L+ +  L ++ N LR +LP  +A +  L +L  S N L    +   + +L  
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPR 509

Query: 132 IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIA 179
           ++EL+L NN  Q   +++PL +  RL + N + N +  E      L  
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 248 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 307
             +    +  +R L +++ ++     +   + L  +   + S N L  ++P +   ++ L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGN 364
           ++L  S+N L   +   +A     LQ L L NN LQ     +   +   L  L L+GN
Sbjct: 489 EVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 9e-07
 Identities = 49/301 (16%), Positives = 96/301 (31%), Gaps = 26/301 (8%)

Query: 77  LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
           L  +V    L +      G        +  L    ++      +         +  E ++
Sbjct: 274 LLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL 333

Query: 137 LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL--IAPKFQLNTLSL---SS 191
           L +                R ++   ++  +++E+     L  + P+ +   L++     
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN-------TKLETLFLVNDSL 244
                    + L +   L+ VD        +  +  L  N         +  L L +  L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 245 AGPFRLP-IHSHKRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVFNNSMNALDGSIPSSF 301
                L  +     +  LD+S+N +R  +P  +  +  L  L   +N++  +DG      
Sbjct: 454 T---VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG-----V 504

Query: 302 GNMKFLQILDLSNNHLTG-EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360
            N+  LQ L L NN L      + L   C  L  L L  N+L      +      L  + 
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563

Query: 361 L 361
            
Sbjct: 564 S 564

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 53/300 (17%), Positives = 90/300 (30%), Gaps = 59/300 (19%)

Query: 183 QLNTLSLSSN-YGDGFIFP--KFLYHQHDLEYVDLSHIKMNGEFPNWL---------LEN 230
            +  + LS N  G        + +  + DLE  + S I                   L  
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 231 NTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVF 286
             KL T+ L +++       P    +  H  L  L + NN +      KI   L  L V 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG---CVNLQFLALSNNNLQ 343
             +             N   L+ +    N L     +  A        L  + +  N ++
Sbjct: 153 KKA------------KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200

Query: 344 --------GHLFSRNFNLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSL- 390
                       +       L+ L L+ N F       +  +L    +L  L LN+  L 
Sbjct: 201 PEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 391 ------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-----LDSLQILDISDNNIS 439
                 +      L N+  LQ + +  N +E              +  L  L+++ N  S
Sbjct: 258 ARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 48/272 (17%), Positives = 83/272 (30%), Gaps = 55/272 (20%)

Query: 303 NMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQFLALSNNNLQ----------GHLFS 348
               ++ + LS N +  E    + E++A    +L+    S+                L  
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 349 RNFNLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
                  L  ++L  N F       +   LSK + LE LYL+NN L  +    +     L
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--L 146

Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI--------SGSLPSCFHPLSIKQVHL 456
           Q + +       P          L+ +    N +        + +  S      +  V +
Sbjct: 147 QELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKM 194

Query: 457 SKNMLH----GQLKRGTFFNCSSLVTLDLSYNRLNG----SIPDWVDGLSQLSHLILGHN 508
            +N +       L       C  L  LDL  N        ++   +     L  L L   
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 509 NLEGEVSVQLCEL------NQLQLLDLSNNNL 534
            L    +  + +         LQ L L  N +
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 55/331 (16%), Positives = 99/331 (29%), Gaps = 82/331 (24%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLR----------GSLPW 99
               S+K + LS  T+GT ++  L + + S   L+    +                 L  
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 100 CMANMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELMLSNNYF------------Q 143
            +     L  + +S N   G  +  PL+      T +E L L NN              Q
Sbjct: 89  ALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 144 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFL 203
                +   N   L+      N ++    +     A  FQ +                  
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKE---WAKTFQSHR----------------- 187

Query: 204 YHQHDLEYVDLS--HIKMNG--EFPNWLLENNTKLETLFLVNDSL----AGPFRLPIHSH 255
                L  V +    I+  G        L    +L+ L L +++     +    + + S 
Sbjct: 188 ----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
             LR+L +++  +       + D                    S   N+  LQ L L  N
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAF------------------SKLENIG-LQTLRLQYN 284

Query: 316 HLTGE----IPEHLAVGCVNLQFLALSNNNL 342
            +  +    +   +     +L FL L+ N  
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 39  ALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLR---- 94
           AL    +   +++ P L+ +      L   S     +   S   L  + +  N +R    
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 95  -GSLPWCMANMTSLRILDVSSNQLT--GSIS-SSPLVHLTSIEELMLSNNYFQ------I 144
              L   +A    L++LD+  N  T  GS + +  L    ++ EL L++          +
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 145 PISLEPLFNYSRLKIFNAENNEIKAEITE--SHSLIAPKFQLNTLSLSSN 192
             +   L N   L+    + NEI+ +        +      L  L L+ N
Sbjct: 265 VDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 35/300 (11%), Positives = 74/300 (24%), Gaps = 85/300 (28%)

Query: 427 SLQILDISDNNISGS-----LPSCFHPLSIKQVHLSKNMLHGQ--------LKRGTFFNC 473
           S++   +  + I+               S+K++ LS N +  +        +      + 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-----SK 59

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGL----------SQLSHLILGHNNLEGEVSVQLCEL-- 521
             L   + S         +  + L           +L  + L  N         L +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 522 --NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579
               L+ L L NN L                                 +           
Sbjct: 120 KHTPLEHLYLHNNGL-------------------------------GPQAGAKIAR---- 144

Query: 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNL 635
                  + +A   + K    L  +    N+L    +        +   + T+ +  N +
Sbjct: 145 -----ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

Query: 636 T-----GSIPSTFSNLKHVESLDLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLSGE 686
                   +    +  + ++ LDL +N         +   L     L    +    LS  
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 54/392 (13%), Positives = 105/392 (26%), Gaps = 121/392 (30%)

Query: 307 LQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363
           ++   L  + +T E  + +    +   +++ + LS N +                    G
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--------------------G 45

Query: 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
                 + ++++    LE    ++             L  L   ++    L         
Sbjct: 46  TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-------- 97

Query: 424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
                  + +SDN      P+   PL         + L            + L  L L  
Sbjct: 98  ------TVRLSDNAFG---PTAQEPLI--------DFLS---------KHTPLEHLYLHN 131

Query: 484 NRL-------------NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530
           N L               ++         L  +I G N LE     +  +    Q    S
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT--FQ----S 185

Query: 531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE---KQNHEIFE---- 583
           +  L           T+    +               EG +  L        E+      
Sbjct: 186 HRLL----------HTVKMVQNG-----------IRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 584 ---FTTKNIAYIYQG-KVLSLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSH 632
              FT    + +    K    L  L L+   L       +     ++ N+  +QTL L +
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQY 283

Query: 633 NNLTGS-----IPSTFSNLKHVESLDLSNNKL 659
           N +               +  +  L+L+ N+ 
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
            L N     L     V ++  S  + S ++    +N+++  +    +   T L+ + + +
Sbjct: 17  GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSH 72

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 471
           N +    P++   L  L+ L ++ N +     +      + ++ L  N L       +  
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRLKN--LNGIPSACLSRLFLDNNELR---DTDSLI 125

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
           +  +L  L +  N+L  SI   +  LS+L  L L  N +       L  L ++  +DL+ 
Sbjct: 126 HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTG 181

Query: 532 NNL 534
              
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 42/245 (17%), Positives = 87/245 (35%), Gaps = 29/245 (11%)

Query: 76  GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
               L +  +  +    +   +      ++ ++  +  ++ +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 195
            LS+N  QI   L PL + ++L+  +   N +K  +    S       L+ L L +N   
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSA-----CLSRLFLDNNE-- 117

Query: 196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH 255
                  L H  +LE + + + K+        L   +KLE L L  + +       +   
Sbjct: 118 -LRDTDSLIHLKNLEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI--PSSFGNMKFLQILDLS 313
           K++  +D++                P LY+ N   +  DG    P    N        + 
Sbjct: 172 KKVNWIDLTGQKCVNEPV----KYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVL 226

Query: 314 NNHLT 318
                
Sbjct: 227 WELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 36/256 (14%), Positives = 80/256 (31%), Gaps = 47/256 (18%)

Query: 102 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 161
             + +    ++    +T          L+ ++     N+  Q   SL  +  ++ LK  +
Sbjct: 16  PGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELH 69

Query: 162 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 221
             +N+I  +++    L     +L  LS++ N                    +L+ I    
Sbjct: 70  LSHNQIS-DLSPLKDLT----KLEELSVNRN-----------------RLKNLNGIP--- 104

Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
                    +  L  LFL N+ L       +   K L  L + NN ++  + +     L 
Sbjct: 105 ---------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE 153

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
            L +  N +             +K +  +DL+      E  ++     +           
Sbjct: 154 VLDLHGNEITNT-----GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 342 LQGHLFSRNFNLTNLQ 357
           +  +  S   +  +  
Sbjct: 209 ISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 17/140 (12%)

Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457
              L       +    +   +  +  +L  +Q  +  ++NI  SL       ++K++HLS
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 458 KNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLS--QLSHLILGHNNLEGEV 514
            N    Q+   +   + + L  L ++ NRL       ++G+    LS L L +N L  + 
Sbjct: 72  HN----QISDLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELR-DT 121

Query: 515 SVQLCELNQLQLLDLSNNNL 534
              L  L  L++L + NN L
Sbjct: 122 DS-LIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 45/270 (16%), Positives = 82/270 (30%), Gaps = 49/270 (18%)

Query: 124 SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 183
            P   L +  +  L          L      S ++ FN +N+ I+  +            
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT----N 64

Query: 184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 243
           L  L LS N                     +S +          L++ TKLE L +  + 
Sbjct: 65  LKELHLSHN--------------------QISDLSP--------LKDLTKLEELSVNRNR 96

Query: 244 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 303
           L     L       L +L + NN +R    +     L  L + NN + ++        G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM-----LGF 148

Query: 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363
           +  L++LDL  N +T             + ++ L+              L     ++   
Sbjct: 149 LSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGK 393
            R++   P  +S   S     +     +  
Sbjct: 206 GRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 51/259 (19%)

Query: 134 ELMLSNNYFQIPIS-LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSN 192
           E +        PI+ + P    +     N     +  ++     L      +   +  ++
Sbjct: 1   ESIQRPT----PINQVFPDPGLANAVKQNLGKQSVT-DLVSQKELS----GVQNFNGDNS 51

Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 252
                               ++  +          ++  T L+ L L ++ ++     P+
Sbjct: 52  --------------------NIQSLAG--------MQFFTNLKELHLSHNQISDLS--PL 81

Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 312
               +L +L V+ N ++ ++       L  L++ NN +         S  ++K L+IL +
Sbjct: 82  KDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDNNELRDT-----DSLIHLKNLEILSI 135

Query: 313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ 372
            NN L   I   L      L+ L L  N +          L  + W+ L G + V E  +
Sbjct: 136 RNNKLK-SI-VMLG-FLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVK 190

Query: 373 SLSKCSSLEGLYLNNNSLL 391
              +      +   +   +
Sbjct: 191 YQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 42/202 (20%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             S +   +   + +  S+   +   + L  L L HN +  ++S  L +L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNR 94

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N L                               ++ G    +              +  
Sbjct: 95  NRLK------------------------------NLNG----IPSACLSRLFLDNNELRD 120

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 651
                 L  L  L +  NK +  I   +G L++++ L+L  N +T +     + LK V  
Sbjct: 121 TDSLIHLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNW 176

Query: 652 LDLSNNKLNGKIPHQLVELKTL 673
           +DL+  K   +      EL   
Sbjct: 177 IDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 28/196 (14%)

Query: 7   NGVVRSQGFPHFKSLEHFDMDFTRI------ALNTSFIALNTSFLQIIS----ESMPSLK 56
             V           +++F+ D + I         T+   L+ S  QI      + +  L+
Sbjct: 29  QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLE 88

Query: 57  YLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ 116
            LS++      N    L+        L  L++ +N+LR +    + ++ +L IL + +N+
Sbjct: 89  ELSVNR-----NRLKNLNGI--PSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNK 139

Query: 117 LTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHS 176
           L    S   L  L+ +E L L  N  +I  +   L    ++   +    +   E  +   
Sbjct: 140 LK---SIVMLGFLSKLEVLDLHGN--EI-TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 177 LIAPKFQLNTLSLSSN 192
            +   +  NT+     
Sbjct: 194 EL---YITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 20/191 (10%)

Query: 494 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 553
             GL+      LG  ++   VS    EL+ +Q  +  N+N+   +      T L E + +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLS 71

Query: 554 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 613
            +           I       +    E        +  +       L   L L  N+ + 
Sbjct: 72  HN----------QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSR-LFLDNNE-LR 119

Query: 614 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 673
                + +L  ++ L++ +N L  SI      L  +E LDL  N++       L  LK +
Sbjct: 120 DTDS-LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174

Query: 674 EVFSVAYNNLS 684
               +      
Sbjct: 175 NWIDLTGQKCV 185

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 426
           EIP +L    ++  + L  N++   IP        +L+ I + NN +   +  + F  L 
Sbjct: 25  EIPTNLP--ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLR 80

Query: 427 SLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           SL  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N
Sbjct: 81  SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDN 138

Query: 485 RLNGSIPDWVDGLSQLSHLILGHN 508
           +L          L  +  + L  N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQI 309
             +K+LR++D+SNN I   +       L SL    ++ N +  L     S F  +  LQ+
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELP---KSLFEGLFSLQL 108

Query: 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGN 364
           L L+ N +   +         NL  L+L +N LQ         L  +Q + L  N
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM-ANMTSLRI 109
               L+ + LS   +   +          L  L  L +  N +   LP  +   + SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ-IPI-SLEPLFNYSRLKIFN 161
           L +++N++   +       L ++  L L +N  Q I   +  PL     + +  
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
            ++ +  N I+  IP         L    + NN ++ L    P +F  ++ L  L L  N
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA---PDAFQGLRSLNSLVLYGN 90

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRFVGEIPQ 372
            +T E+P+ L  G  +LQ L L+ N +       F    +L NL  L L  N+       
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKG 146

Query: 373 SLSKCSSLEGLYLNNN 388
           + S   +++ ++L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 506
           P +I ++ L +N +   +  G F     L  +DLS N+++  +      GL  L+ L+L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 507 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESYSN-SSSPDEQ 560
            N +          L  LQLL L+ N ++  +    F +      L    +   +     
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 561 FEIFFSIE 568
           F    +I+
Sbjct: 148 FSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 655
           L  L+ L L  NK+   +P  +   L  +Q L L+ N +   +    F +L ++  L L 
Sbjct: 79  LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY 136

Query: 656 NNKLNGKIPH----QLVELKTLEVFS 677
           +NKL   I       L  ++T+ +  
Sbjct: 137 DNKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 604 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL-- 659
           + L  N  I  IPP       +++ ++LS+N ++  +    F  L+ + SL L  NK+  
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 660 -NGKIPHQLVELKTL 673
               +   L  L+ L
Sbjct: 95  LPKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSN 656
           L  L  L L+ NK+   +      +L  +  L+L  N L      TFS L+ ++++ L+ 
Sbjct: 103 LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 657 N 657
           N
Sbjct: 162 N 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP----HQLVELKTLEVFSV 678
             I  + L  N +    P  FS  K +  +DLSNN+++ ++       L  L +L    +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 679 AYNNLS 684
             N ++
Sbjct: 88  YGNKIT 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 318
            +L ++NN         I   LP L   N S N +      +F     +  + L++N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 319 GEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
             +   +  G  +L+ L L +N +       F     L++++ L L  N+     P +  
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFD 150

Query: 376 KCSSLEGLYLNNN------SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 429
              SL  L L  N       L      WLG   R + I+  N   + P  ++   +  + 
Sbjct: 151 TLHSLSTLNLLANPFNCNCYLA-----WLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVA 205

Query: 430 ILDI 433
           I D 
Sbjct: 206 IQDF 209

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 378 SSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
                L LNNN             L +L+ I   NN +       F     +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 437 NISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
            +  ++    F  L S+K + L  N +   +   +F   SS+  L L  N++  ++    
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 495 -DGLSQLSHLILGHN 508
            D L  LS L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRF 366
             L L+NN  T      +      L+ +  SNN +   +    F   + +  + L  NR 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
                +      SL+ L L +N +          L+ ++ + + +N +    P  F  L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 427 SLQILDISDN 436
           SL  L++  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 427 SLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
               L +++N  +    +  F  L  +++++ S N +   ++ G F   S +  + L+ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 485 RLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CF 542
           RL  ++   +  GL  L  L+L  N +    +     L+ ++LL L +N +   + P  F
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 543 DN 544
           D 
Sbjct: 150 DT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGE 369
           D SN  L  +IPEH+         L L+NN       +  F  L  L+ +    N+    
Sbjct: 17  DCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSL 428
              +    S +  + L +N L     +    L  L+ +++ +N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 429 QILDISDNNISGSLPSCFHPL-SIKQVHLSKN 459
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 29  TRIALNTSFIALNTSFLQIISES-----MPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHL 83
             I   T+ + LN +   ++  +     +P L+ ++ S   +     G  +        +
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----ASGV 83

Query: 84  QELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
            E+ + SN L  ++   M   + SL+ L + SN++T  + +   + L+S+  L L +N
Sbjct: 84  NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 506
           P    ++ L+ N        G F     L  ++ S N++   I +   +G S ++ ++L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 507 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTT 546
            N LE         L  L+ L L +N +   +    F   +
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLS 129

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 655
            S ++ + L+ N+L   +  ++   L  ++TL L  N +T  + + +F  L  V  L L 
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY 137

Query: 656 NNKLNGKIPH----QLVELKTLEVFS 677
           +N++   +       L  L TL + +
Sbjct: 138 DNQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 604 LDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661
           L L+ N+    +        L +++ +N S+N +T      F     V  + L++N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 662 KIP----HQLVELKTLEVFSVAYNNLS 684
            +       L  LKTL    +  N ++
Sbjct: 96  -VQHKMFKGLESLKTL---MLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLS 655
           L  L  L L  N++   +       L+ ++ L+L  N +T ++    F  L  + +L+L 
Sbjct: 104 LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLL 161

Query: 656 NN 657
            N
Sbjct: 162 AN 163

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.8 bits (157), Expect = 3e-11
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQLDS 427
           +    L    +L  LY+ N   L  +    L  L  L+ + +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 462
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSN 656
              L+ L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 657 NKLNGKIPHQLVELKTLEVFSVAYNNL 683
           N L   +  + V+  +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 26/112 (23%)

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
           + L +L + N     H+                               +  L+ L +  +
Sbjct: 31  ENLTELYIENQQHLQHLE------------------------LRDLRGLGELRNLTIVKS 66

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 367
            L   +          L  L LS N L+  L  +     +LQ L L GN   
Sbjct: 67  GLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL---QGHLFSRNFN 352
                    + L  L + N      +      G   L+ L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 353 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
              L  L L  N     +     +  SL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 3/107 (2%)

Query: 605 DLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGK 662
            L C           +     +  L + +      +       L  + +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 663 IPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 709
            P        L   ++++N L   +     Q  +  E    GN   C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 75  QGLCSLVHLQELYIASNDLRGSLPW-CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
             L    +L ELYI +      L    +  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 134 ELMLSNNYFQIPISLEP-LFNYSRLKIFNAENNEI 167
            L LS N  +   SL         L+      N +
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 474 SSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQ---LCELNQLQLLDL 529
            +L  L +   +    +      GL +L +L +  + L     V         +L  L+L
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSRLNL 87

Query: 530 SNNNLHGPIPPCFDNTTLHE 549
           S N L           +L E
Sbjct: 88  SFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 23/119 (19%), Positives = 33/119 (27%), Gaps = 26/119 (21%)

Query: 418 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477
                   ++L  L I +      L                                 L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-----------------------RDLRGLGELR 59

Query: 478 TLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535
            L +  + L   +         +LS L L  N LE  +S +  +   LQ L LS N LH
Sbjct: 60  NLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 272 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLAVG 328
           +P  I      LY+ +N +  L+   P  F ++  L+ L L +N L      + + L   
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVFDSL--- 87

Query: 329 CVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 387
              L  L L  N L   L S  F+ L +L+ L +  N+   E+P+ + + + L  L L+ 
Sbjct: 88  -TQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQ 144

Query: 388 NSLLGKIPRWLGNLTRLQYIIMPNN 412
           N L          L+ L +  +  N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
           + LYL++N +    P    +L  L+ + + +N L       F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500
            LPS                         F     L  L +  N+L   +P  ++ L+ L
Sbjct: 102 VLPS-----------------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137

Query: 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 532
           +HL L  N L+         L+ L    L  N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 429 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 488 GSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
             +P  V D L  L  L +  N L  E+   +  L  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 53/276 (19%), Positives = 97/276 (35%), Gaps = 49/276 (17%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVN----LQFLALSNNNLQ---GHLFSR--NFNLTNLQ 357
           +  LDLS N+L       L     N    +  L LS N+L         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 358 WLQLEGNRF----VGEIPQSLSKC-SSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYI 407
            L L GN        E+ ++L+    ++  L L  N    K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 408 IMPNNHLEGPIPVEFCQL-----DSLQILDISDNNI--------SGSLPSCFHPLSIKQV 454
            +  N L      E  Q+      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 455 HLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILG 506
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 507 HNNLEG-------EVSVQLCELNQLQLLDLSNNNLH 535
           ++ ++         +      + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 36/315 (11%), Positives = 99/315 (31%), Gaps = 48/315 (15%)

Query: 73  LDQGLCSLVHLQELYIASNDL--RGSLPWCMA---NMTSLRILDVSSNQLT----GSISS 123
           +++       +  L ++ N+L    ++    A      S+  L++S N L       +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 124 SPLVHLTSIEELMLSNNYFQ----IPISLEPLFNYSRLKIFNAENNEIKAEITE--SHSL 177
                  ++  L LS N+        +          + + +   N+  ++ +     + 
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 178 IAPKFQLNTLSLSSNY----GDGFIFPKFLYHQHDLEYVDLS--HIKMNG--EFPNWLLE 229
                 + +L+L  N         +         ++  ++L   ++      E   +L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 230 NNTKLETLFLVN--------DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
               + +L L            LA  F         +  L++  N + G     +  +  
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFS---SIPNHVVSLNLCLNCLHGPSLENLKLLKD 250

Query: 282 ------SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGE----IPEHLAV 327
                 ++Y+  + +  +      ++ ++F N++ + ++D +   +       I   +  
Sbjct: 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310

Query: 328 GCVNLQFLALSNNNL 342
                   +L N  L
Sbjct: 311 LSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 53/367 (14%), Positives = 109/367 (29%), Gaps = 88/367 (23%)

Query: 227 LLENNTKLETLFLVN--------DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 278
                  + +L L            L   F    ++   +  L++S N++      ++  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFA---NTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 279 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQF 334
           +L +      +                 +  L+LS N L+ +    + + LA     +  
Sbjct: 74  ILAA----IPAN----------------VTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113

Query: 335 LALSNNNLQG----HLFS--RNFNLTNLQWLQLEGNRF----VGEIPQSLSKC-SSLEGL 383
           L L  N+              N    ++  L L GN        E+ Q L+   +++  L
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 384 YLNNNSL-------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL-----DSLQIL 431
            L  N+L       L K          +  + +  N L      E   +     + +  L
Sbjct: 173 NLRGNNLASKNCAELAKFLA--SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 432 DISDNNISGS----LPSCFHPL-SIKQVHLSKNMLHGQLKRG------TFFNCSSLVTLD 480
           ++  N + G     L      L  ++ V+L  +++    K         F N   ++ +D
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 481 LSYNRLNGSIPDWVDGLSQ--------LSHLILGHNNLEGEVSVQLCELNQ-----LQLL 527
            +   ++   P     +S              L +  L      Q    +      L+  
Sbjct: 291 KNGKEIH---PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRES 347

Query: 528 DLSNNNL 534
             +   L
Sbjct: 348 IQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 40/267 (14%), Positives = 100/267 (37%), Gaps = 56/267 (20%)

Query: 427 SLQILDISDNNISGS--------LPSCFHPLSIKQVHLSKNMLHGQ----LKRGTFFNCS 474
           S+  L++S N++           L +   P ++  ++LS N L  +    L +       
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 475 SLVTLDLSYNRL-NGSIPDWVDGL----SQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529
           ++  LDL +N   + S  ++        + ++ L L  N+L  + S +L ++       L
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-------L 162

Query: 530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK----QNHEIFEFT 585
           +    +          +L+    N+ +     E+   +      +       N       
Sbjct: 163 AAIPAN--------VNSLNLRG-NNLASKNCAELAKFLASIPASVTSLDLSANL----LG 209

Query: 586 TKNIAYIYQG--KVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTG-- 637
            K+ A +      + + +  L+L  N L    + ++     +L  +QT+ L ++ +    
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 638 -----SIPSTFSNLKHVESLDLSNNKL 659
                ++ + F N++ +  +D +  ++
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEI 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 48/404 (11%), Positives = 116/404 (28%), Gaps = 53/404 (13%)

Query: 300 SFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQFLALSNNNL--QGHLFSRNF--NLT 354
           +      L+ L L   +  T +    +   C  ++ L +  ++   +   +      + T
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 355 NLQWLQLEGNRFVGEIPQSL----SKCSSLEGLYLNNNSL-----LGKIPRWLGNLTRLQ 405
           +L+ L      F    P+ L      C SL  + + +  +       K    L       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 465
                    +    V   +L  L +  +  N +    P       I+++ L   +L  + 
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ---IRKLDLLYALLETED 309

Query: 466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN--- 522
                  C +L  L+      +  +        QL  L +     E  +  +   ++   
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 523 ---------QLQLLDLSNNNL----------HGPIPPCFDNTTLHESYSNSSSPDEQFEI 563
                    +L+ + +  +++          +      F    L      +  P +    
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD--NG 427

Query: 564 FFSIEGHQGFLEKQNHEI--FEFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGHIPP 617
             S+      L +    +     T   ++YI  G+    +  + L         +     
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVGESDEGLMEF-- 483

Query: 618 QIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLN 660
                  +Q L +     +  +I +  + L  +  L +   + +
Sbjct: 484 -SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 57/382 (14%), Positives = 107/382 (28%), Gaps = 48/382 (12%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG----SLPWC 100
           L  I      +K L +   +        L +       L+ L     +        L   
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 101 MANMTSLRILDVSS-NQLTGSISSSPLVHLTSIEELMLSNNYFQIP--ISLEPLFNYSRL 157
             N  SL  + V     L          +L       L+ +       ++L       RL
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 158 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSH- 216
            +     NE+      +  +         L L     +       +    +LE ++  + 
Sbjct: 276 GLSYMGPNEMPILFPFAAQIR-------KLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

Query: 217 IKMNGEFPNWLLENNTKLETLFL---VNDSLAGPFRLPIHSH---------KRLRQLDVS 264
           I   G     L +   +L+ L +    ++         +            + L  + V 
Sbjct: 329 IGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386

Query: 265 NNNIRGHIPVKIGDVLPSLYVFNN---------SMNALDGSIPSSFGNMKFLQILDLSNN 315
            ++I       IG  L +L  F           +   LD  + S     K L+       
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 316 --HLTGEIPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLEGNRFVGE 369
              LT     ++     N++++ L                     NLQ L++ G  F   
Sbjct: 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR---GCPNLQKLEMRGCCFSER 503

Query: 370 -IPQSLSKCSSLEGLYLNNNSL 390
            I  +++K  SL  L++     
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 79/545 (14%), Positives = 157/545 (28%), Gaps = 83/545 (15%)

Query: 15  FPHFKSLEHFDMDFTRIALNTSFIALN-----TSFLQIISESMPSLKYLSLSYYTLGTNS 69
              F +L    +     A   + I  N     T ++  IS ++  LK +      +    
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 70  SGTL--------------------DQGLCSLV----HLQELYIASNDLR-GSLPWCMA-- 102
              L                      GL S+V     ++ L +  +        W     
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 103 -NMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELMLSNNYFQIPISLEPLFNY-SR 156
            + TSL +L+    +    IS   L  +     S+  + + +      + L   F   + 
Sbjct: 189 QHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLVSVKVGDF---EILELVGFFKAAAN 244

Query: 157 LKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSH 216
           L+ F   +      + E +  +    +L  L LS    +    P        +  +DL +
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE--MPILFPFAAQIRKLDLLY 302

Query: 217 IKMNGEFPNWLLENNTKLETLFLVND-SLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 275
             +  E    L++    LE L   N     G   L     K+L++L +        +  +
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDE 361

Query: 276 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 335
            G V                 + +     + L+ + +  + +T E  E +     NL   
Sbjct: 362 EGLV-------------SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408

Query: 336 ALSNNNLQGHLFSRNF---------NLTNLQWLQLEGN-RFVG--EIPQSLSKCSSLEGL 383
            L   + +  +                  L+          +    +        ++  +
Sbjct: 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468

Query: 384 YLNNNSLLGK-IPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQLDSLQILDISDNNIS-- 439
            L       + +  +      LQ + M      E  I     +L SL+ L +     S  
Sbjct: 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

Query: 440 --GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---IPDWV 494
               +       +I+ +   +     Q  +G          + L+Y  L G     P  V
Sbjct: 529 GQDLMQMARPYWNIELIPSRRVPEVNQ--QGEIREMEHPAHI-LAYYSLAGQRTDCPTTV 585

Query: 495 DGLSQ 499
             L +
Sbjct: 586 RVLKE 590

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 51/409 (12%), Positives = 113/409 (27%), Gaps = 88/409 (21%)

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP-----------EHLAVGCVNLQF 334
                 A    +   F N++ L++       +   IP             ++     L+ 
Sbjct: 57  MALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 335 LALSNNNL--QGHLFSRNFNLTNLQWLQLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSL 390
           +      +              +L+ L+L+         +   ++ C  ++ L +  +S 
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176

Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
             K  +WL  L +                       SL++L+      +   P     ++
Sbjct: 177 SEKDGKWLHELAQH--------------------NTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL--NGSIPDWVDGLSQLSHLILGHN 508
                                NC SLV++ +    +            L +     L  +
Sbjct: 217 R--------------------NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 509 NLEGEVSVQLCELNQLQLLDLSN---NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFF 565
               E  + L    +L  L LS    N +    P       L   Y+   + D       
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-----HC 311

Query: 566 SIEGHQGFLEKQN--HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 623
           ++      LE     + I     + +  +   +    L  L +        +  + G ++
Sbjct: 312 TLIQKCPNLEVLETRNVI---GDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 624 ------------RIQTLNLSHNNLT----GSIPSTFSNLKHVESLDLSN 656
                        ++ + +  +++T     SI +   NL     + L  
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
            LY+  N        +P    N K L ++DLSNN ++  +          L  L LS N 
Sbjct: 35  ELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR 89

Query: 342 LQ---GHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNN 388
           L+      F     L +L+ L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 506
           P  + +++L  N     L      N   L  +DLS NR++ ++ +     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 507 HNNLEGEVSVQLCELNQLQLLDLSNNNL 534
           +N L          L  L+LL L  N++
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 27/132 (20%)

Query: 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 413
            ++  L L+GN+F   +P+ LS    L  + L+NN +     +   N+T+L  +I+  N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 414 LEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 472
           L   IP   F  L SL++L +  N+IS  +P                        G F +
Sbjct: 90  LRC-IPPRTFDGLKSLRLLSLHGNDIS-VVP-----------------------EGAFND 124

Query: 473 CSSLVTLDLSYN 484
            S+L  L +  N
Sbjct: 125 LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LS N+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 664 PH----QLVELKTLEVFSVAYNNLSGEIPE 689
           P      L  L+ L +     N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHG---NDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 29  TRIALNTSFIALNTSFLQIISE---SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQE 85
             I  + + + L+ +   ++ +   +   L  + LS   + T S+ +       +  L  
Sbjct: 27  KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN----MTQLLT 82

Query: 86  LYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
           L ++ N LR  +P      + SLR+L +  N ++  +       L+++  L +  N
Sbjct: 83  LILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 5e-09
 Identities = 71/437 (16%), Positives = 150/437 (34%), Gaps = 57/437 (13%)

Query: 33  LNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLV----HLQELYI 88
           +    + +    L++I++S  + K L LS      +  G    GL ++     +L+EL +
Sbjct: 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLS------SCEGFSTDGLAAIAATCRNLKELDL 163

Query: 89  ASNDLRG----SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELMLSNN 140
             +D+       L       TSL  L++S   L   +S S L  L     +++ L L+  
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSLKLNRA 221

Query: 141 YFQIPISLEPLFNYSRLKIFNAE--NNEIKAEITESHSLIAPKF-QLNTLSLSSNYGDGF 197
              +      L    +L+         E++ ++    S+      +L  LS   +    +
Sbjct: 222 -VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 198 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND-SLAGPFRLPIHSHK 256
           + P        L  ++LS+  +       LL    KL+ L++++    AG   L      
Sbjct: 281 L-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
            LR+L V  +                      ++   +  + S       L+ +      
Sbjct: 340 -LRELRVFPSEPFVM---------------EPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-----------NLTNLQWLQLEGNR 365
           +T      +A    N+    L     +   +               +  +L+ L L G  
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 366 FVGEIPQSLSKCSSLEGLYLN--NNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEF 422
                    +    +E L +    +S LG +   L     L+ + + +    +  +    
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 423 CQLDSLQILDISDNNIS 439
            +L++++ L +S  ++S
Sbjct: 503 SKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 72/515 (13%), Positives = 147/515 (28%), Gaps = 105/515 (20%)

Query: 17  HFKSLEHFDMD----FTRIAL-NTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSG 71
            F  +   ++     F    L    +      +++ +S S   L+ + L    +      
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT----- 118

Query: 72  TLDQGLCSLV----HLQELYIASNDL--RGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125
             D  L  +     + + L ++S +      L    A   +L+ LD+  + +   +S   
Sbjct: 119 --DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHW 175

Query: 126 LVHL----TSIEELMLSNNYFQI-PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 180
           L H     TS+  L +S    ++   +LE L                             
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP------------------------ 211

Query: 181 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW-----LLENNTKLE 235
              L +L L+       +    L     LE +             +      L    +L 
Sbjct: 212 --NLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 236 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG 295
            L    D++            RL  L++S   ++ +  VK+    P L          D 
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328

Query: 296 SIPSSFGNMKFLQILDLS---------NNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH- 345
            +       K L+ L +          N  LT +    +++GC  L+ +      +    
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQS-----------LSKCSSLEGLYLNN---NSLL 391
           L +   N  N+   +L           +           +  C  L  L L+    + + 
Sbjct: 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF 448

Query: 392 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 451
             I  +   +  L                      S+     SD  +   L  C    S+
Sbjct: 449 EYIGTYAKKMEML----------------------SVAFAGDSDLGMHHVLSGC---DSL 483

Query: 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
           +++ +       +          ++ +L +S   +
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 70/517 (13%), Positives = 150/517 (29%), Gaps = 71/517 (13%)

Query: 39  ALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP 98
                    +    P ++ + L             D  L        +Y     +  S  
Sbjct: 52  NCYAVSPATVIRRFPKVRSVELKG------KPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 99  WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNY-SRL 157
                   L  + +    +T            + + L+LS+        L  +      L
Sbjct: 106 -------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 158 KIFNAENNEIKAEITESHSLIAPKF-QLNTLSLS---SNYGDGFIFPKFLYHQHDLEYVD 213
           K  +   +++        S     +  L +L++S   S      +  + +    +L+ + 
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE-RLVTRCPNLKSLK 217

Query: 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIP 273
           L+      +    LL+   +LE L     +      +       L               
Sbjct: 218 LNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC------------ 264

Query: 274 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 333
                    L   +   +A+   +P+ +     L  L+LS   +       L   C  LQ
Sbjct: 265 -------KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317

Query: 334 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP---------QSLSK-CSSLEGL 383
            L + +      L        +L+ L++  +      P          S+S  C  LE +
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 384 YLNNNSL----LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
                 +    L  I R   N+TR +  I+                 +L+ LDI    I 
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA---------PDYLTLEPLDIGFGAIV 428

Query: 440 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL-NGSIPDWVDGLS 498
                      ++++ LS  +L  ++          +  L +++    +  +   + G  
Sbjct: 429 EHCK------DLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481

Query: 499 QLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNL 534
            L  L +       +  +     L  ++ L +S+ ++
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 15/120 (12%)

Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQ 357
           + + N    + LDL    +   I E+L         +  S+N ++       F  L  L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 358 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-----LGNLTRLQYIIMPNN 412
            L +  NR              L  L L NN     +        L +L  L Y+ +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
           N    + L L G + +  I    +     + +  ++N +  K+      L RL+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI-RKLDG-FPLLRRLKTLLVNN 73

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNIS 439
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 585 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644
           T + I    Q         LDL   K I  I      L +   ++ S N +   +   F 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFP 61

Query: 645 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
            L+ +++L ++NN++          L  L    +  N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 1   MSSCEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSL 60
           M       + ++  + +       D+   +I             ++ +  ++     +  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKI-----------PVIENLGATLDQFDAIDF 49

Query: 61  SYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGS 120
           S      N    LD G   L  L+ L + +N +          +  L  L +++N L   
Sbjct: 50  SD-----NEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 121 ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
               PL  L S+  L +  N    P++ +   +Y RL +   
Sbjct: 104 GDLDPLASLKSLTYLCILRN----PVTNKK--HY-RLYVIYK 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
            +    + L L            ++    +L     +  + N++R  L      +  L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 167
           L V++N++   I       L  + EL+L+NN       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 31/149 (20%), Positives = 47/149 (31%), Gaps = 30/149 (20%)

Query: 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444
           L    L+ +  +   N  R + + +    +   I      LD    +D SDN I      
Sbjct: 4   LTAE-LIEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR----- 55

Query: 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 504
                                K   F     L TL ++ NR+          L  L+ LI
Sbjct: 56  ---------------------KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94

Query: 505 LGHNNLEGEVSVQ-LCELNQLQLLDLSNN 532
           L +N+L     +  L  L  L  L +  N
Sbjct: 95  LTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 595 GKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESL 652
           G  L     +D S N++  +   P     L R++TL +++N +          L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 653 DLSNNKLNG-KIPHQLVELKTLEVFSVAYN 681
            L+NN L        L  LK+L    +  N
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 430 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489
           ++ ++   I        + +  +++ L    +   +             +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL 534
           +  +   L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 228 LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFN 287
             N  +   L L    +     L   +  +   +D S+N IR      +   L +L V N
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 73

Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLT--GEIPEHLAVGCVNLQFLALSNNNLQGH 345
           N +  +   +      +  L  L L+NN L   G++ + LA    +L +L +  N +   
Sbjct: 74  NRICRIGEGLDQ---ALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 346 LFSRNFNLTNLQWLQ 360
              R + +  +  ++
Sbjct: 129 KHYRLYVIYKVPQVR 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 22/174 (12%)

Query: 272 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 331
           +P  I      L + +  +  L     ++F  +  L  L+L  N L   +   +      
Sbjct: 29  VPSGIPADTEKLDLQSTGLATLS---DATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 332 LQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYL 385
           L  L L+NN L   L    F +LT L  L L GN+      +SL      + + L+ L L
Sbjct: 85  LGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRL 138

Query: 386 NNNSLLGKIPRWLG---NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
           N N  L  IP   G    LT LQ + +  N L+      F +L  LQ + +  N
Sbjct: 139 NTNQ-LQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 34/169 (20%)

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
           E L L +  L          LT+L ++ +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQ 499
           SLP                        G F + + L  L L  N+L  S+P  V D L++
Sbjct: 97  SLPL-----------------------GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 500 LSHLILGHNNL----EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
           L  L L  N L     G       +L  LQ L LS N L       FD 
Sbjct: 133 LKELRLNTNQLQSIPAGAFD----KLTNLQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 52/191 (27%), Positives = 75/191 (39%), Gaps = 47/191 (24%)

Query: 330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLY 384
            + + L L +  L     +    LT L WL L+ N+      Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444
           L NN  L  +P  +                       F  L  L  L +  N +  SLPS
Sbjct: 90  LANNQ-LASLPLGV-----------------------FDHLTQLDKLYLGGNQLK-SLPS 124

Query: 445 -CFHPL-SIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLS 498
             F  L  +K++ L+ N    QL+    G F   ++L TL LS N+L  S+P    D L 
Sbjct: 125 GVFDRLTKLKELRLNTN----QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179

Query: 499 QLSHLILGHNN 509
           +L  + L   N
Sbjct: 180 KLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 16/147 (10%)

Query: 29  TRIALNTSFIALNTSFLQIISE----SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQ 84
           + I  +T  + L ++ L  +S+     +  L +L+L Y  L T S+G  D     L  L 
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----LTELG 86

Query: 85  ELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 143
            L +A+N L  SLP     ++T L  L +  NQL  S+ S     LT ++EL L+ N  Q
Sbjct: 87  TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 144 IPISLEP-LFNY-SRLKIFNAENNEIK 168
              S+    F+  + L+  +   N+++
Sbjct: 145 ---SIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 35/182 (19%)

Query: 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538
           LDL    L         GL++L+ L L +N L+   +    +L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 539 PPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 597
              FD+ T L + Y   +    Q +   S+             +F+  TK          
Sbjct: 100 LGVFDHLTQLDKLYLGGN----QLK---SLP----------SGVFDRLTK---------- 132

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLS 655
              L  L L+ N+L   IP      LT +QTL+LS N L  S+P   F  L  ++++ L 
Sbjct: 133 ---LKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187

Query: 656 NN 657
            N
Sbjct: 188 GN 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 7e-09
 Identities = 86/555 (15%), Positives = 153/555 (27%), Gaps = 185/555 (33%)

Query: 147 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKF--QLNTLSLSSNYGDGFIFPKF-- 202
            L    NY  L       + IK E     S++   +  Q + L     Y D  +F K+  
Sbjct: 86  VLRI--NYKFLM------SPIKTE-QRQPSMMTRMYIEQRDRL-----YNDNQVFAKYNV 131

Query: 203 ------------LYHQHDLEYVDLSHIKMNG------------------EFPN---WL-- 227
                       L      + V +    + G                  +      WL  
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLI-D-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 228 ---------LENNTKLETLFLVND-------SLAGPFRLPIHSHK-RLRQL--------- 261
                    LE    L+ L    D         +   +L IHS +  LR+L         
Sbjct: 190 KNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 262 -----DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL----DGSIPSSFGNMKFLQI-LD 311
                +V N                    FN S   L       +           I LD
Sbjct: 247 LLVLLNVQNAKA--------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 312 LSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS--------RNFNLTNLQWLQLEG 363
             +  LT +  + L +  ++ +   L    L  +           R+   T   W  +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 364 NRFVGEIPQSLSKCSSLE--GLY-----LNNNSLLGKIPR------WLGNLTRLQYIIMP 410
           ++    I  SL+     E   ++        ++    IP       W   +     +++ 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVV- 408

Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
                           SL  ++      + S+PS +  L +K    ++  LH  +     
Sbjct: 409 ----------NKLHKYSL--VEKQPKESTISIPSIY--LELKVKLENEYALHRSI----- 449

Query: 471 FNCSSLVTLDLSYNRL-----NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQ 525
                   +D  YN       +  IP ++D     SH  +GH+    E   ++     + 
Sbjct: 450 --------VD-HYNIPKTFDSDDLIPPYLDQYF-YSH--IGHHLKNIEHPERMTLFRMV- 496

Query: 526 LLDL-----------SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574
            LD            +  N  G I         ++ Y   + P  +  +  +I     FL
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAIL---DFL 552

Query: 575 EKQNHEIFEFTTKNI 589
            K    +      ++
Sbjct: 553 PKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 4e-08
 Identities = 76/496 (15%), Positives = 145/496 (29%), Gaps = 158/496 (31%)

Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 312
           H H      +       G    +  D+L    VF            +   N     + D+
Sbjct: 1   HHHHHHMDFET------GEHQYQYKDILS---VF----------EDAFVDNFDCKDVQDM 41

Query: 313 SNNHLTGEIPEHL-----AVGCVNLQFLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRF 366
             + L+ E  +H+     AV      F  L +   +    F       N ++L +   + 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKT 100

Query: 367 VGEIPQSLSKC--SSLEGLYLNNNSLLGK--IPR---------WLGNLTRLQYIIMPNNH 413
               P  +++      + LY N+N +  K  + R          L  L   + ++     
Sbjct: 101 EQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----- 154

Query: 414 LEGP-------IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 466
           ++G        + ++ C   S ++    D  I          L++K  +  + +L     
Sbjct: 155 IDGVLGSGKTWVALDVCL--SYKVQCKMDFKI--------FWLNLKNCNSPETVL----- 199

Query: 467 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL---NQ 523
                    L  L     +++   P+W       S++ L  ++++ E+   L      N 
Sbjct: 200 -------EMLQKL---LYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 524 LQLLD-LSNNNLHGPIPPCFDN------TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
           L +L  + N          F+       TT  +  ++  S      I             
Sbjct: 247 LLVLLNVQNAK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPD 301

Query: 577 QNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636
           +   +              K L      D     L    P ++          L+ N   
Sbjct: 302 EVKSLL------------LKYL------DCRPQDL----PREV----------LTTNPRR 329

Query: 637 GSI--------PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
            SI         +T+ N KHV       +KL               +   + N L  E  
Sbjct: 330 LSIIAESIRDGLATWDNWKHVN-----CDKLT-------------TIIESSLNVL--EPA 369

Query: 689 EWKAQF---ATFNESS 701
           E++  F   + F  S+
Sbjct: 370 EYRKMFDRLSVFPPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 8e-06
 Identities = 64/367 (17%), Positives = 113/367 (30%), Gaps = 108/367 (29%)

Query: 19  KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQ--G 76
           K+   F++   +I L T F  + T FL   + +  SL + S++          T D+   
Sbjct: 257 KAWNAFNLS-CKILLTTRFKQV-TDFLSAATTTHISLDHHSMTL---------TPDEVKS 305

Query: 77  LCSLVHLQELYIASNDLR----GSLPWCMA---------NMTSLRILDVSSNQLTGSISS 123
           L        L     DL      + P  ++           T      V+ ++LT  I S
Sbjct: 306 LLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 124 SPLVHLTSIEELMLSNNY-----FQ----IPIS-----------------LEPLFNYSRL 157
           S L  L   E       +     F     IP                   +  L  YS +
Sbjct: 362 S-LNVLEPAE---YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 158 KIFNAENN--------EIKAEITESHSL---------IAPKFQLNTLSLSSNYGDGFIFP 200
           +    E+         E+K ++   ++L         I   F  + L     Y D + + 
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQYFYS 475

Query: 201 KFLYHQHDLEYVDLSHIKMNGEFPNWLLENN---TKLETLFLVNDSLAGPFRLPIHSHKR 257
              +H  ++E     H +    F    L+      K+      +DS A      I +   
Sbjct: 476 HIGHHLKNIE-----HPERMTLFRMVFLDFRFLEQKIR-----HDSTAWNASGSILN--T 523

Query: 258 LRQLDVSNNNIRGHIPV---KIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
           L+QL      I  + P     +  +L   ++     N +           K+  +L ++ 
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILD--FLPKIEENLICS---------KYTDLLRIAL 572

Query: 315 NHLTGEI 321
                 I
Sbjct: 573 MAEDEAI 579

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 30/193 (15%)

Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIG--DVLPSLYVFNNS 289
             ++ +   N  +       I     +R L +  N +       I     L +L     +
Sbjct: 41  NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILT 93

Query: 290 MNALDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 348
            N L  S+P+  F  +  L+ L L  N L   +P+ +     NL +L L++N LQ  L  
Sbjct: 94  GNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPK 150

Query: 349 RNF-NLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPRWLG--- 399
             F  LTNL  L L  N+      QSL      K + L+ L L  N L   +P   G   
Sbjct: 151 GVFDKLTNLTELDLSYNQL-----QSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFD 202

Query: 400 NLTRLQYIIMPNN 412
            LT LQYI + +N
Sbjct: 203 RLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPN 411
                  L+      +   + ++ +S++ +  NN+ +  +  I      L  ++Y+ +  
Sbjct: 19  AETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGG 72

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGT 469
           N L   I     +L +L  L ++ N +  SLP+  F  L+ +K++ L +N L   L  G 
Sbjct: 73  NKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGV 128

Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLD 528
           F   ++L  L+L++N+L  S+P  V D L+ L+ L L +N L+        +L QL+ L 
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187

Query: 529 LSNNNL 534
           L  N L
Sbjct: 188 LYQNQL 193

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 18/148 (12%)

Query: 272 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 331
           +P  I      L +  NS+ +L       F  +  L  L L  N L   +P  +     +
Sbjct: 22  VPTGIPAQTTYLDLETNSLKSLP---NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 332 LQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYL 385
           L +L LS N LQ  L +  F+ LT L+ L L  N+      QSL      K + L+ L L
Sbjct: 78  LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRL 131

Query: 386 NNNSLLGKIPR-WLGNLTRLQYIIMPNN 412
             N L   +P      LT LQYI + +N
Sbjct: 132 YQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 429 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
             LD+  N++       F  L+ + Q++L  N L   L  G F   +SL  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 488 GSIPDWV-DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
            S+P+ V D L+QL  L L  N L+        +L QL+ L L  N L       FD 
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 31/159 (19%)

Query: 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 413
               +L LE N           + +SL  LYL  N            L  L         
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----------LQSL--------- 67

Query: 414 LEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFF 471
              P  V F +L SL  L++S N +  SLP+  F  L+ +K++ L+ N L   L  G F 
Sbjct: 68  ---PNGV-FNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121

Query: 472 NCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNN 509
             + L  L L  N+L  S+PD V D L+ L ++ L H+N
Sbjct: 122 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 29  TRIALNTSFIALNTSFLQIIS----ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQ 84
           T I   T+++ L T+ L+ +     + + SL  L L    L +  +G  ++    L  L 
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK----LTSLT 79

Query: 85  ELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
            L +++N L+ SLP      +T L+ L +++NQL  S+       LT +++L L  N
Sbjct: 80  YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF 366
             L L++N L     + L     +L  L L  N L G +    F   +++Q LQL  N+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 367 VGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPRWLG---NLTRLQYIIMPNN 412
                + +S         L+ L L +N  +  +    G   +L  L  + + +N
Sbjct: 91  -----KEISNKMFLGLHQLKTLNLYDNQ-ISCVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILG 506
           PL   ++ L+ N L      G F     LV L+L  N+L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 507 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 544
            N ++   +     L+QL+ L+L +N +   + P  F++
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILDLSNNHL 317
            +L +++N +       +   LP L       N L   I  + F     +Q L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQ----GHLFSRNFNLTNLQWLQLEGN 364
             EI   + +G   L+ L L +N +     G  F    +L +L  L L  N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQISCVMPG-SFE---HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 29  TRIALNTSFIALNTSFLQIIS-----ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHL 83
             I L+T+ + LN + L  IS       +P L  L L    L        +       H+
Sbjct: 25  RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE----GASHI 80

Query: 84  QELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 140
           QEL +  N ++  +   M   +  L+ L++  NQ++  +      HL S+  L L++N
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLS 655
           L  L  L+L  N+L G I P      + IQ L L  N +   I +  F  L  +++L+L 
Sbjct: 53  LPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110

Query: 656 NNKLNGKIPH----QLVELKTLEVFS 677
           +N+++  +       L  L +L + S
Sbjct: 111 DNQISC-VMPGSFEHLNSLTSLNLAS 135

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 349 RNFNLTNLQWLQLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
           RN   ++++ L L+ +R   G++     +   LE L   N  L   I   L  L +L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
            + +N + G + V   +  +L  L++S N I 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLR--GSLPWCMA 102
           L++ + +   +K L L       ++ G L+        L+ L   +  L    +LP    
Sbjct: 9   LELRNRTPSDVKELVLD---NSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP---- 61

Query: 103 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
            +  L+ L++S N+++            ++  L LS N  +   ++EPL     LK  + 
Sbjct: 62  KLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 163 ENNEI 167
            N E+
Sbjct: 121 FNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
           +  L + N+  N  +G +       + L+ L   N  LT  I  +L      L+ L LS+
Sbjct: 19  VKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSD 73

Query: 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCSSLEGLYLNNN 388
           N + G L        NL  L L GN+       + L K  +L+ L L N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 587 KNIAYIYQGKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644
                         L  L      L  I ++P     L +++ L LS N ++G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 645 NLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYN 681
              ++  L+LS NK+        L +L+ L+   +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 587 KNIAYIYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN 645
           + I    + +  S +  L L  ++   G +         ++ L+  +  LT SI +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPK 62

Query: 646 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           L  ++ L+LS+N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 48  ISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL 107
           +++    L++LS     L + +       L  L  L++L ++ N + G L        +L
Sbjct: 37  LTDEFEELEFLSTINVGLTSIA------NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 108 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
             L++S N++    +  PL  L +++ L L N      ++     +Y R  +F  
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTNLN--DY-RENVFKL 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 27/110 (24%)

Query: 424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
           + + L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNN 532
           NR++G +    +    L+HL L  N ++   +++ L +L  L+ LDL N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 447 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILG 506
            P  +K++ L  +  +     G       L  L      L  SI + +  L++L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 507 HNNLEGEVSVQLCELNQLQLLDLSNNNL 534
            N + G + V   +   L  L+LS N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRI 109
            ++ + K+L+LS      N+   +   L  + +L+ L +  N ++  +    A   +L  
Sbjct: 45  STLKACKHLALST-----NNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
           L +S NQ+    S S +  L ++  L +SNN       ++ L    +L+      N +  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 170 EITESHSL 177
           +  E+++ 
Sbjct: 155 DYKENNAT 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 19/123 (15%)

Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ--GHLFSRNFNLT 354
           + ++   +K  + L LS N++  +I   L+ G  NL+ L+L  N ++   +L +      
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIKKIENLDA---VAD 93

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-----LGNLTRLQYIIM 409
            L+ L +  N+        + K  +L  LY++NN    KI  W     L  L +L+ +++
Sbjct: 94  TLEELWISYNQI--ASLSGIEKLVNLRVLYMSNN----KITNWGEIDKLAALDKLEDLLL 147

Query: 410 PNN 412
             N
Sbjct: 148 AGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
           L     L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +S N
Sbjct: 47  LKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103

Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLS 684
           ++   +   + +L  L V  ++ N ++
Sbjct: 104 QIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 37/162 (22%)

Query: 376 KCSSLEGLYLNNN-SLLGKIPRWLGNLTRLQYIIMPNNH---LEGPIPVEFCQLDSLQIL 431
             +  E + L+     + K+   L  L   +++ +  N+   +          +++L+IL
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRIL 75

Query: 432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 491
            +  N I            I+                      +L  L +SYN++  S+ 
Sbjct: 76  SLGRNLIK----------KIE---------------NLDAVADTLEELWISYNQIA-SLS 109

Query: 492 DWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNN 532
             ++ L  L  L + +N +     +  L  L++L+ L L+ N
Sbjct: 110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 13/116 (11%)

Query: 50  ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASN---DLRGSLPWCMANMTS 106
             M +L+ LSL       N    ++        L+EL+I+ N    L G     +  + +
Sbjct: 67  SGMENLRILSLGR-----NLIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVN 116

Query: 107 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
           LR+L +S+N++T       L  L  +E+L+L+ N            +  R+++   
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNR 365
           ++ L L N        E L    VNL+FL+L N  L       N   L  L+ L+L  NR
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPRWLGNLTRLQYIIMPNN---HLEGPIPV 420
             G +     K  +L  L L+ N L  +  +   L  L  L+ + + N    +L      
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 421 EFCQLDSLQILDISDNNIS 439
            F  L  L  LD  D    
Sbjct: 142 VFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 349 RNFNLTNLQWLQLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
           RN     ++ L L+  +   G+I    ++  +LE L L N  L+  +   L  L +L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439
            +  N + G + +   +L +L  L++S N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 45  LQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLR--GSLPWCMA 102
           L++ + +  +++ L L       ++ G ++      V+L+ L + +  L    +LP    
Sbjct: 16  LELRNRTPAAVRELVLD---NCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP---- 68

Query: 103 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 162
            +  L+ L++S N++           L ++  L LS N  +   +LEPL     LK  + 
Sbjct: 69  KLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 163 ENNEI 167
            N E+
Sbjct: 128 FNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 48  ISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSL 107
           ++    +L++LSL           ++   L  L  L++L ++ N + G L      + +L
Sbjct: 44  LTAEFVNLEFLSLIN-----VGLISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 108 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 160
             L++S N+L    +  PL  L  ++ L L N      ++     +Y R  +F
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLN--DY-RESVF 143

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
           LD   +   G I         ++ L+L +  L  S+ S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 664 PHQLVELKTLEVFSVAYNNLS 684
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 601 LSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
           L  L L    L  + ++P     L +++ L LS N + G +      L ++  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 659 LNG-KIPHQLVELKTLEVFSVAYN 681
           L        L +L+ L+   +   
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 421 EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
               +  L +LD   +N           ++++ + L    L              L  L+
Sbjct: 22  TPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLE 77

Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNN 532
           LS NR+ G +    + L  L+HL L  N L+   +++ L +L  L+ LDL N 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 230 NNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDV--LPSLYVF 286
               +  L L N          + +    L  L + N  +       + ++  LP L   
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLT--GEIPEHLAVGCVNLQFLALSNN 340
             S N + G +      +  L  L+LS N L     + E L      L+ L L N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507
           P +++++ L     +     G      +L  L L    L  S+ + +  L +L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 508 NNLEGEVSVQLCELNQLQLLDLSNNNL 534
           N + G + +   +L  L  L+LS N L
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRF 366
             L+L +N L   +P  +      L  L+LS N +Q  L    F+ LT L  L L  N+ 
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKL 88

Query: 367 VGEIPQSLS-----KCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNN 412
                QSL      K + L+ L L+ N  L  +P      LT LQ I +  N
Sbjct: 89  -----QSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 8/206 (3%)

Query: 209 LEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN-NN 267
           ++++DLS+  +     + +L   +KL+ L L    L+ P    +  +  L +L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 268 IRGHIPVKIGDVLPSLYVFN--NSMNALDGSIPSSFG-NMKFLQILDLS--NNHLTGEIP 322
                   +      L   N     +  +  +  +     + +  L+LS    +L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 323 EHLAVGCVNLQFLALSN-NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSL 380
             L   C NL  L LS+   L+   F   F L  LQ L L     +       L +  +L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQY 406
           + L +      G +      L  LQ 
Sbjct: 275 KTLQVFGIVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 49/241 (20%), Positives = 79/241 (32%), Gaps = 52/241 (21%)

Query: 298 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL-QGHLFSRNFNLTNL 356
           P   G +    ++         + P         +Q + LSN+ +    L       + L
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR--LQYIIMPNNHL 414
           Q L LEG R    I  +L+K S+L  L L+  S            +   LQ +       
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS----------GFSEFALQTL------- 163

Query: 415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 474
                +  C    L  L++S          CF          ++  +   +         
Sbjct: 164 -----LSSCS--RLDELNLS---------WCFD--------FTEKHVQVAVAH----VSE 195

Query: 475 SLVTLDLSYNRLN---GSIPDWVDGLSQLSHLILGH-NNLEGEVSVQLCELNQLQLLDLS 530
           ++  L+LS  R N     +   V     L HL L     L+ +   +  +LN LQ L LS
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 531 N 531
            
Sbjct: 256 R 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 48/232 (20%), Positives = 76/232 (32%), Gaps = 52/232 (22%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           +Q +DLSN+ +       +   C  LQ L+L    L   + +     +NL  L L G   
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 367 VGE--IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT--RLQYIIMPNNHLEGPIPVEF 422
             E  +   LS CS L+ L L           W  + T   +Q  +   +          
Sbjct: 155 FSEFALQTLLSSCSRLDELNL----------SWCFDFTEKHVQVAVAHVSE--------- 195

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSSLVTLDL 481
               ++  L++S              L    +  L +              C +LV LDL
Sbjct: 196 ----TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDL 229

Query: 482 SY-NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSN 531
           S    L          L+ L HL L         ++  L E+  L+ L +  
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 2e-06
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 23/169 (13%)

Query: 226 WLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV-LPSL- 283
            +L+    L  L +          +       L+ L++ +  +   +   I    LP+L 
Sbjct: 166 PVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 284 ----------YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--N 331
                     Y F+  MN               L+ L + +      + E      +   
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSK--DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 332 LQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK 376
           L+ + +S   L       L      + +L+++ ++ N    E+ + L K
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 31/223 (13%)

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
            + +N        G F+        ++S+        D    L  +  L          +
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ----VDLSPVLDAMPLLNNLKIKGTNNL 185

Query: 515 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD-EQFEIFFSIEGHQGF 573
           S+       L+ L++ +  L   +               S  P+ E+  ++  +E +   
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDI---------LGSDLPNLEKLVLYVGVEDY--- 233

Query: 574 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN---LTRIQTLNL 630
                   F+        ++       L  L +   +    +         L +++T+++
Sbjct: 234 -------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 631 SHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 669
           S   LT      +      +KH++ +++  N L+ ++  +L +
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 33/258 (12%)

Query: 303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSR--NFNLTNLQ 357
               L  ++L++  L       L    +  + L L  N+L              +   + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 358 WLQLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRWLGNLTRLQY 406
            L+L  N      V  + + L+  +S+  L L +  L       L      L    +LQ 
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ---LDRNRQLQE 215

Query: 407 IIMPNNHLEGPIPVEFCQL----DSLQILDISDNNIS--GSLPSCFHPLSIKQVHLSKNM 460
           + +  N       +   +      SL++L +  N +S  G            +      +
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR-DLGGAAEGGARVVV 274

Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 520
              +    + +    L  +  + N  + +    V    +L    L  +        +  +
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRAR---VQRHLELLLRDLEDSRGATLNPWRKAQ 331

Query: 521 L----NQLQLLDLSNNNL 534
           L     +++ L     + 
Sbjct: 332 LLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 52/309 (16%)

Query: 104 MTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNY-SRLK 158
           ++SLR L+++  ++T      +++       +++E+ L++     P  L  L     R +
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLRTLLPVFLRAR 129

Query: 159 IFNAENNEIKAEITE--SHSLIAPKFQLNTLSLSSNY----GDGFIFPKFLYHQHDLEYV 212
               + N +  E  +     L+  + Q+ TL LS+N     G   +      +   + ++
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHL 188

Query: 213 DLSHIKMNGEFPNWL---LENNTKLETLFLVNDSL----AGPFRLPIHSHKRLRQLDVSN 265
            L H  +  E    L   L+ N +L+ L +  +      A         H  L  L +  
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 266 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
           N +                  +     L     ++ G  + + +       ++       
Sbjct: 249 NELS-----------------SEGRQVLRDLGGAAEGGAR-VVVSLTEGTAVS------- 283

Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC----SSLE 381
               V L  +  + N+       R+  L       LE +R     P   ++       + 
Sbjct: 284 EYWSVILSEVQRNLNSWDRARVQRHLELLL---RDLEDSRGATLNPWRKAQLLRVEGEVR 340

Query: 382 GLYLNNNSL 390
            L     S 
Sbjct: 341 ALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 42/303 (13%), Positives = 78/303 (25%), Gaps = 75/303 (24%)

Query: 206 QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN--------DSLAGPFRLPIHSHKR 257
           +H L+ V+L+  +++      LL    +   L L            L        H   +
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL---HDQCQ 156

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 317
           +  L +SNN +       + + L                          +  L L +  L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAG---------------------NTSVTHLSLLHTGL 195

Query: 318 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF----VGEIPQS 373
             E       G   L    L  N               LQ L +  N         + ++
Sbjct: 196 GDE-------GLELL-AAQLDRN-------------RQLQELNVAYNGAGDTAALALARA 234

Query: 374 LSKCSSLEGLYLNNNSL-------LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
             +  SLE L+L  N L       L  +        R+   +     +      E+  + 
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS-----EYWSVI 289

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML--HGQLKRGTFF-NCSSLVTLDLSY 483
              + ++  N  S         L +    L  +        ++         +  L    
Sbjct: 290 ---LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346

Query: 484 NRL 486
              
Sbjct: 347 GSS 349

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 53  PSLKYLSLSYY-TLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANM----TSL 107
           P L+ ++L+    +   +     + L +  ++++  I        + + +A M     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 108 RILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNYFQI 144
           + L+V SN ++G    ++  + L   TS+ EL + N    +
Sbjct: 96  KSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 53/175 (30%)

Query: 227 LLENNTKLETLFLVN-----DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
           +  N+  LE + L N               + ++  +++  +        +   + ++L 
Sbjct: 31  IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK 90

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN 341
                NN+                 L+ L++ +N ++G     L          AL +N 
Sbjct: 91  V----NNT-----------------LKSLNVESNFISGSGILALVE--------ALQSN- 120

Query: 342 LQGHLFSRNFNLTNLQWLQLEGNRF------VGEIPQSLSKCSSLEGLYLNNNSL 390
                       T+L  L+++            EI   L K ++L     +    
Sbjct: 121 ------------TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN-LTN 355
           IP++       Q+L L +N +T ++   +      L  L L NN L   L +  F+ LT 
Sbjct: 28  IPTT------TQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQ 79

Query: 356 LQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNN 388
           L  L L  N+ +  IP+ +     SL  ++L NN
Sbjct: 80  LTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 13/105 (12%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 294 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN------LQGHLF 347
              +P+   +   +Q +D +++ +     +H+  G   ++ + L   +      L+  L 
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLE-RLS 107

Query: 348 SRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSLEGLYLNNNSLL 391
                  ++  +++     V +    +L    +L+ L+L++   +
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTN 355
           IP+        Q L L+NN +T ++   +    VNLQ L  ++N L   + +  F  LT 
Sbjct: 31  IPTD------KQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQ 82

Query: 356 LQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNN 388
           L  L L  N       +S+         SL  +YL NN
Sbjct: 83  LTQLDLNDNHL-----KSIPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	779
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.31

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-73  Score=662.49  Aligned_cols=690  Identities=29%  Similarity=0.421  Sum_probs=580.6

Q ss_pred             CCcceecCCCCCCCCCCCCEEeCCCCcccccccccccccc---cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCC
Q 004005            4 CEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTS---FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSL   80 (779)
Q Consensus         4 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l   80 (779)
                      |.-.|..|.     -.+++.|+|+++.         +.+.   ++..+. .+++|+.++++.+.+     ..+|+.++++
T Consensus        40 C~w~gv~C~-----~~~v~~L~L~~~~---------l~g~~~~l~~~l~-~L~~L~~l~~~~~~~-----~~l~~~~~~l   99 (768)
T 3rgz_A           40 CTFDGVTCR-----DDKVTSIDLSSKP---------LNVGFSAVSSSLL-SLTGLESLFLSNSHI-----NGSVSGFKCS   99 (768)
T ss_dssp             GGSTTEEEE-----TTEEEEEECTTSC---------CCEEHHHHHHHTT-TCTTCCEEECTTSCE-----EECCCCCCCC
T ss_pred             cCCcceEEC-----CCcEEEEECCCCC---------cCCccCccChhHh-ccCcccccCCcCCCc-----CCCchhhccC
Confidence            344566563     2589999999998         6666   778888 899999999998876     4567889999


Q ss_pred             CCCCEEeccCCCCCCCcch--hhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCccc--ccCCCC
Q 004005           81 VHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP--LFNYSR  156 (779)
Q Consensus        81 ~~L~~L~L~~~~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~--l~~l~~  156 (779)
                      ++|++|+|++|.+.+.+|.  .++++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+...  +.++++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence            9999999999999988888  999999999999999999988887445899999999999999986544221  789999


Q ss_pred             CcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcE
Q 004005          157 LKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLET  236 (779)
Q Consensus       157 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  236 (779)
                      |++|++++|.+.+..+     ...+.+|++|++ +.+.+++..|. ++.+++|++|++++|.+++.+|..+ ..+++|++
T Consensus       180 L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~  251 (768)
T 3rgz_A          180 LKHLAISGNKISGDVD-----VSRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKL  251 (768)
T ss_dssp             CCEEECCSSEEESCCB-----CTTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCE
T ss_pred             CCEEECCCCcccccCC-----cccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCE
Confidence            9999999999876433     255679999999 66777777776 9999999999999999998888775 79999999


Q ss_pred             EEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCc
Q 004005          237 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH  316 (779)
Q Consensus       237 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~  316 (779)
                      |++++|.+.+..+..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus       252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence            999999998876654  889999999999999989999988877999999999999999999999999999999999999


Q ss_pred             CccccchhhhhCCCCCCEEEccCcccCccCcccCCCCC-CCCEEEccCCcCCccCCccccC--CCCCCEEEccCCCCCCC
Q 004005          317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSK--CSSLEGLYLNNNSLLGK  393 (779)
Q Consensus       317 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~  393 (779)
                      +.+.+|...+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..  +++|++|++++|.+.+.
T Consensus       330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  409 (768)
T 3rgz_A          330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK  409 (768)
T ss_dssp             EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred             ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence            99899988777899999999999999988888888877 9999999999999888877766  88999999999999988


Q ss_pred             cCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccC
Q 004005          394 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFN  472 (779)
Q Consensus       394 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~  472 (779)
                      .|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+.+.+|.. +.+
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~  488 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSN  488 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-Hhc
Confidence            999999999999999999999999999999999999999999999988887665 889999999999998888876 899


Q ss_pred             CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005          473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  552 (779)
Q Consensus       473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  552 (779)
                      +++|++|++++|++++.+|.++..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|..+..........
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998776543221111


Q ss_pred             CCCCCC----------cchhh---hhhcccc--cccccccccceeeeeecccee-e-eccccccCcceEEccCCcccccC
Q 004005          553 NSSSPD----------EQFEI---FFSIEGH--QGFLEKQNHEIFEFTTKNIAY-I-YQGKVLSLLSGLDLSCNKLIGHI  615 (779)
Q Consensus       553 ~~~~~~----------~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~L~~L~Ls~n~l~~~~  615 (779)
                      ......          .....   .....+.  .............+....... + .....++.|++||+++|++++.+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence            000000          00000   0000000  000000000000111111100 0 11234678999999999999999


Q ss_pred             cccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc
Q 004005          616 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA  695 (779)
Q Consensus       616 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  695 (779)
                      |..++.+++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|.. .++.
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~  727 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE  727 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986 6899


Q ss_pred             cCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 004005          696 TFNESSYEGNTFLCGLPLPICRSPATMPEA  725 (779)
Q Consensus       696 ~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~  725 (779)
                      ++...++.|||.+|+.|++.|....+....
T Consensus       728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~  757 (768)
T 3rgz_A          728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYA  757 (768)
T ss_dssp             GSCGGGGCSCTEEESTTSCCCCSCC-----
T ss_pred             cCCHHHhcCCchhcCCCCcCCCCCccCCCC
Confidence            999999999999999998889766654443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.6e-67  Score=607.17  Aligned_cols=604  Identities=29%  Similarity=0.387  Sum_probs=391.9

Q ss_pred             CCCCCccee---cCCCCCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccc--
Q 004005            1 MSSCEVNGV---VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQ--   75 (779)
Q Consensus         1 ~~~~~~~~~---~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~--   75 (779)
                      |+++++.|.   +++ ++.++++|+.++++.+.         .. ..+..+. .+++|++|+|++|.+    .+.+|.  
T Consensus        57 L~~~~l~g~~~~l~~-~l~~L~~L~~l~~~~~~---------~~-~l~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~  120 (768)
T 3rgz_A           57 LSSKPLNVGFSAVSS-SLLSLTGLESLFLSNSH---------IN-GSVSGFK-CSASLTSLDLSRNSL----SGPVTTLT  120 (768)
T ss_dssp             CTTSCCCEEHHHHHH-HTTTCTTCCEEECTTSC---------EE-ECCCCCC-CCTTCCEEECCSSEE----EEEGGGGG
T ss_pred             CCCCCcCCccCccCh-hHhccCcccccCCcCCC---------cC-CCchhhc-cCCCCCEEECCCCcC----CCcCCChH
Confidence            456667776   553 56666666666666665         22 1234445 666666666666666    444555  


Q ss_pred             cccCCCCCCEEeccCCCCCCCcchhh-cCCCCCCEEEcCCCcccCCCCccc---ccCCCCCCEEEccCccccCcCCcccc
Q 004005           76 GLCSLVHLQELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSP---LVHLTSIEELMLSNNYFQIPISLEPL  151 (779)
Q Consensus        76 ~l~~l~~L~~L~L~~~~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~l~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~l  151 (779)
                      .++++++|++|+|++|.+.+..|..+ .++++|++|++++|++.+..|. .   ++++++|++|++++|.+++..+   +
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~  196 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---V  196 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---C
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---c
Confidence            56666666666666666655555444 5666666666666666644443 3   5566666666666666654322   2


Q ss_pred             cCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcC
Q 004005          152 FNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN  231 (779)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (779)
                      ..+++|++|++++|.+.+..+.    +...++|++|++ +.+.+++..|..+..+++|++|++++|.+.+.+|..   .+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l  268 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PL  268 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CC
T ss_pred             ccCCcCCEEECcCCcCCCCCcc----cccCCCCCEEEC-cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---cc
Confidence            5566666666666666543322    344456666666 455555556666666666666666666666555543   55


Q ss_pred             CCCcEEEcCCCcCcCCCCcCcCCC-CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCcc-ccCCCCCCE
Q 004005          232 TKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQI  309 (779)
Q Consensus       232 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~  309 (779)
                      ++|++|++++|.+.+.++..+... ++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|.. +..+++|++
T Consensus       269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            666666666666665555555443 66666666666666555554443 566666666666666555544 666666666


Q ss_pred             EEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCC--CCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 004005          310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN--LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN  387 (779)
Q Consensus       310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  387 (779)
                      |++++|.+.+.+|..+....++|++|++++|.+.+..+..+..  +++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  427 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF  427 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence            6666666665555555432226666666666665555444443  55666666666666666666666666666666666


Q ss_pred             CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccC
Q 004005          388 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLK  466 (779)
Q Consensus       388 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~  466 (779)
                      |.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+. +++|+.|++++|++.+.+|
T Consensus       428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence            666656666666666666666666666666666666666666666666666655554443 5566666666666655555


Q ss_pred             cccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-------------------------------
Q 004005          467 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-------------------------------  515 (779)
Q Consensus       467 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------------  515 (779)
                      .. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|                               
T Consensus       508 ~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          508 KW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             GG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             hH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            54 5566666666666666666666666666666666666666654444                               


Q ss_pred             ---------------------------------------ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCC
Q 004005          516 ---------------------------------------VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS  556 (779)
Q Consensus       516 ---------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  556 (779)
                                                             ..+..+++|+.|++++|+++|.+|..+..++          
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~----------  656 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP----------  656 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT----------
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc----------
Confidence                                                   3445567788888888888888888776654          


Q ss_pred             CCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccc
Q 004005          557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT  636 (779)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  636 (779)
                                                                 .|+.|+|++|++++.+|..++++++|+.|+|++|+++
T Consensus       657 -------------------------------------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          657 -------------------------------------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             -------------------------------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             -------------------------------------------cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence                                                       7999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005          637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       637 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      +.+|..++.+++|++|++++|++++.+|.. ..+.++....+.+|+--|-.|
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred             CcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence            999999999999999999999999999964 344555566678887554333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.9e-60  Score=544.36  Aligned_cols=638  Identities=21%  Similarity=0.217  Sum_probs=470.4

Q ss_pred             CEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhh
Q 004005           22 EHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM  101 (779)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~  101 (779)
                      +.++.+++.         +. .+|..+.   +++++|++++|.+    .+..+.+|.++++|++|+|++|.+.+..|.+|
T Consensus         7 ~~~~cs~~~---------L~-~ip~~~~---~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   69 (680)
T 1ziw_A            7 EVADCSHLK---------LT-QVPDDLP---TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELC   69 (680)
T ss_dssp             SEEECCSSC---------CS-SCCSCSC---TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred             CeeECCCCC---------cc-ccccccC---CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence            677888777         43 3454333   6899999999998    34444568999999999999999998899999


Q ss_pred             cCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCc
Q 004005          102 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPK  181 (779)
Q Consensus       102 ~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  181 (779)
                      +++++|++|++++|++. .+|...++++++|++|++++|.+++ ++...+.++++|++|++++|.+.+.....   +..+
T Consensus        70 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l  144 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT---QVQL  144 (680)
T ss_dssp             HHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCS---SSCC
T ss_pred             hcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchh---hccc
Confidence            99999999999999998 6777679999999999999999874 45567899999999999999987654433   4556


Q ss_pred             ccccEEecCCCCCCCCCCchhhc--CCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCc---CCCC
Q 004005          182 FQLNTLSLSSNYGDGFIFPKFLY--HQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI---HSHK  256 (779)
Q Consensus       182 ~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~  256 (779)
                      .+|++|++ +.+.+++..+..+.  .+++|++|++++|.+.+..|..+ ..+++|+.|++.++.+.......+   ...+
T Consensus       145 ~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~  222 (680)
T 1ziw_A          145 ENLQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANT  222 (680)
T ss_dssp             TTCCEEEC-CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred             ccCCEEEc-cCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence            78999999 66666666666554  45789999999998886555554 788899999998887653211111   1247


Q ss_pred             ccCEEEccCCcCCCCCCccccccC--CCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCE
Q 004005          257 RLRQLDVSNNNIRGHIPVKIGDVL--PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF  334 (779)
Q Consensus       257 ~L~~L~l~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  334 (779)
                      +|++|++++|.+.+..|..+.. +  ++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ ..+.++++|+.
T Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  300 (680)
T 1ziw_A          223 SIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRY  300 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCE
T ss_pred             cccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccE
Confidence            8999999999888666655544 3  349999999999988888889999999999999999884444 44457899999


Q ss_pred             EEccCcccCc---------cCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCC--CcCccccC--C
Q 004005          335 LALSNNNLQG---------HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG--KIPRWLGN--L  401 (779)
Q Consensus       335 L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~--l  401 (779)
                      |++++|...+         +....|..+++|++|++++|.+.+..+..|.++++|++|++++|.+..  .....|..  .
T Consensus       301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~  380 (680)
T 1ziw_A          301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH  380 (680)
T ss_dssp             EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred             EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence            9998764432         222367788999999999999998888888999999999999887532  22223333  3


Q ss_pred             CCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCC-Ccc-CcccccEEEccCcccccccCcccccCCCCccEE
Q 004005          402 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP-SCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL  479 (779)
Q Consensus       402 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  479 (779)
                      ++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+ ..+ .+++|+.|++++|.+.+..+ ..|..+++|+.|
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L  459 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRL  459 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh-hhhhcCcccccc
Confidence            589999999999988888888899999999999998876554 333 47789999999998855444 448889999999


Q ss_pred             eccCccCC--CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCC
Q 004005          480 DLSYNRLN--GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSP  557 (779)
Q Consensus       480 ~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~  557 (779)
                      ++++|.+.  +..|..+..+++|+.|++++|++++..+..+.++++|++|++++|++++..+..+....           
T Consensus       460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-----------  528 (680)
T 1ziw_A          460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-----------  528 (680)
T ss_dssp             ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-----------
T ss_pred             hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-----------
Confidence            99998876  45778888899999999999999887777888899999999999988754322221100           


Q ss_pred             CcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccccc
Q 004005          558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  637 (779)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  637 (779)
                                                        ......+++|++|++++|+++...+..|.++++|++|+|++|++++
T Consensus       529 ----------------------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          529 ----------------------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT  574 (680)
T ss_dssp             ----------------------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence                                              0001224579999999999986555678999999999999999998


Q ss_pred             CCCCCCCCCCCCCEEECCCCcCCCCCccccc-CCCCCcEEeccCCcCcccCC--CCccccccCCcccccCCCCCCCC-CC
Q 004005          638 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLEVFSVAYNNLSGEIP--EWKAQFATFNESSYEGNTFLCGL-PL  713 (779)
Q Consensus       638 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~~~~~~~~n~~~c~~-~l  713 (779)
                      +.+..|.++++|+.|++++|++++..+..+. .+++|+.+++++|++.|.|+  .|+..|..-....      .-+. ..
T Consensus       575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~------~~~~~~~  648 (680)
T 1ziw_A          575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN------IPELSSH  648 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----------------
T ss_pred             CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcc------cccccCC
Confidence            8788889999999999999999988887777 78899999999999999887  3443332211111      1111 11


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccc
Q 004005          714 PICRSPATMPEASIGNEQDDNLID  737 (779)
Q Consensus       714 ~~c~~~~~~~~~~~~~~~~~~~~~  737 (779)
                      ..|..|....++.+.++++..+++
T Consensus       649 ~~C~~p~~~~g~~l~~~~~~~~~~  672 (680)
T 1ziw_A          649 YLCNTPPHYHGFPVRLFDTSSCKD  672 (680)
T ss_dssp             ------------------------
T ss_pred             cEECCchHHCCCcccccChhhcCC
Confidence            248888888888888887776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5e-58  Score=529.37  Aligned_cols=573  Identities=22%  Similarity=0.212  Sum_probs=483.9

Q ss_pred             CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005           19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP   98 (779)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~   98 (779)
                      +++++|+++++.         +.+..+..+. .+++|++|++++|.+    .+..|.+++++++|++|+|++|.+++..+
T Consensus        25 ~~l~~L~Ls~n~---------l~~~~~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~   90 (680)
T 1ziw_A           25 TNITVLNLTHNQ---------LRRLPAANFT-RYSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSD   90 (680)
T ss_dssp             TTCSEEECCSSC---------CCCCCGGGGG-GGTTCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcEEECCCCC---------CCCcCHHHHh-CCCcCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccCccCh
Confidence            689999999998         6666666788 999999999999999    45567788999999999999999996666


Q ss_pred             hhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccccc
Q 004005           99 WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI  178 (779)
Q Consensus        99 ~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  178 (779)
                      .+|+++++|++|++++|++. .++...++++++|++|++++|.+++. ....+.++++|++|++++|.+++.....+. .
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~  167 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELD-I  167 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHG-G
T ss_pred             hhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCHHHhh-c
Confidence            68999999999999999998 56654899999999999999999864 445788999999999999998775543322 1


Q ss_pred             CCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhh--hcCCCCcEEEcCCCcCcCCCCcCcCCCC
Q 004005          179 APKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL--ENNTKLETLFLVNDSLAGPFRLPIHSHK  256 (779)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~  256 (779)
                      ....+|+.|++ +.+.+++..+..+..+++|+.++++++.+.+.....+.  ...++|++|++++|.+.+..+..+..++
T Consensus       168 ~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~  246 (680)
T 1ziw_A          168 FANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK  246 (680)
T ss_dssp             GTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred             cccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence            23468999999 66678888888999999999999999987643333221  1358999999999999988888888775


Q ss_pred             c--cCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCcc--------ccchhhh
Q 004005          257 R--LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG--------EIPEHLA  326 (779)
Q Consensus       257 ~--L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~  326 (779)
                      .  |++|++++|.+++..+..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|...+        .++...+
T Consensus       247 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~  325 (680)
T 1ziw_A          247 WTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF  325 (680)
T ss_dssp             GSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred             cCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence            5  9999999999985544444 458999999999999999999999999999999999876543        2223345


Q ss_pred             hCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCc--cCCccccC--CCCCCEEEccCCCCCCCcCccccCCC
Q 004005          327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG--EIPQSLSK--CSSLEGLYLNNNSLLGKIPRWLGNLT  402 (779)
Q Consensus       327 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~  402 (779)
                      ..+++|++|++++|.+.+..+..|.++++|++|++++|.+..  .....|..  .++|+.|++++|.+.+..+..+..++
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            679999999999999999888889999999999999997542  22333433  35899999999999988889999999


Q ss_pred             CCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccc--cccCcccccCCCCccE
Q 004005          403 RLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLH--GQLKRGTFFNCSSLVT  478 (779)
Q Consensus       403 ~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~  478 (779)
                      +|+.|++++|.+.+.++ ..+.++++|++|++++|++.+..+..+. +++|+.|++++|.+.  +.++.. |.++++|+.
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~  484 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTI  484 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cccCCCCCE
Confidence            99999999999986554 6789999999999999999887776665 889999999999885  344554 899999999


Q ss_pred             EeccCccCCCccCccccCCCCCCEEEccCCccccccc--------ccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005          479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS--------VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  550 (779)
Q Consensus       479 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  550 (779)
                      |++++|++++..+.++.++++|+.|++++|++++..+        ..+.++++|+.|++++|+++...+..|..++    
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~----  560 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF----  560 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc----
Confidence            9999999998888889999999999999999986422        2378899999999999999866666666544    


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEEC
Q 004005          551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  630 (779)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  630 (779)
                                                                       +|++|++++|++++..+..|.++++|+.|+|
T Consensus       561 -------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          561 -------------------------------------------------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             -------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             -------------------------------------------------CcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence                                                             7999999999999877777899999999999


Q ss_pred             cccccccCCCCCCC-CCCCCCEEECCCCcCCCCCc
Q 004005          631 SHNNLTGSIPSTFS-NLKHVESLDLSNNKLNGKIP  664 (779)
Q Consensus       631 s~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~  664 (779)
                      ++|++++..+..|. .+++|++|++++|++.+..+
T Consensus       592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999988887777 78999999999999987654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.9e-56  Score=519.17  Aligned_cols=567  Identities=22%  Similarity=0.181  Sum_probs=404.4

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCc-chhhcCCCCCCEEEcCCCcccCCCCcccccCCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSL-PWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS  131 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~  131 (779)
                      +++++|+|++|.+    ....|.+|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|. .++++++
T Consensus        24 ~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~   98 (844)
T 3j0a_A           24 NTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFH   98 (844)
T ss_dssp             TTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred             CCcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcc
Confidence            5777777777777    3344556677777777777777544444 66777777777777777777644454 6777777


Q ss_pred             CCEEEccCccccCcCCc-ccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005          132 IEELMLSNNYFQIPISL-EPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE  210 (779)
Q Consensus       132 L~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  210 (779)
                      |++|++++|.+++..+. ..+.++++|++|++++|.+.+.                           ..+..++.+++|+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------~~~~~~~~L~~L~  151 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---------------------------YLHPSFGKLNSLK  151 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC---------------------------CCCGGGGTCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc---------------------------ccchhHhhCCCCC
Confidence            77777777777653322 2366666666666666654421                           1234677788889


Q ss_pred             EEEccCccCcccCChhhhhcC--CCCcEEEcCCCcCcCCCCcCcCCCCc------cCEEEccCCcCCCCCCccccccC--
Q 004005          211 YVDLSHIKMNGEFPNWLLENN--TKLETLFLVNDSLAGPFRLPIHSHKR------LRQLDVSNNNIRGHIPVKIGDVL--  280 (779)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~n~i~~~~~~~~~~~l--  280 (779)
                      +|++++|.+.+..+..+ ..+  ++|+.|++++|.+.+..+..+..+++      |++|++++|.+.+.++..+...+  
T Consensus       152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            99998888887666665 444  78888888888888777666665554      88888888877766666555432  


Q ss_pred             CCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhC--CCCCCEEEccCcccCccCcccCCCCCCCCE
Q 004005          281 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG--CVNLQFLALSNNNLQGHLFSRNFNLTNLQW  358 (779)
Q Consensus       281 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  358 (779)
                      ..++.+.++.+.....               +..+.+. ......+.+  .++|+.|++++|.+.+..+..+..+++|+.
T Consensus       231 ~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             CCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             ccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence            3456666653332210               1122222 122222223  367888999888888877888888899999


Q ss_pred             EEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcC
Q 004005          359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI  438 (779)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  438 (779)
                      |++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|.++++|++|++++|.+
T Consensus       295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            99999988888888888889999999999988877788888899999999999988877777788889999999999888


Q ss_pred             ccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccC-ccccCCCCCCEEEccCCcccccccc-
Q 004005          439 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV-  516 (779)
Q Consensus       439 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-  516 (779)
                      ++...    +++|+.+++++|++. .++..    ..+++.|++++|.+.+... ..+..+++|+.|++++|++++..+. 
T Consensus       375 ~~i~~----~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          375 TTIHF----IPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             CCCSS----CCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             CcccC----CCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            75332    667888888888875 34432    4678899999999886432 2345789999999999998865433 


Q ss_pred             cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccc
Q 004005          517 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK  596 (779)
Q Consensus       517 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (779)
                      .+..+++|+.|++++|.+++..+......                                                ...
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------~~~  477 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCWD------------------------------------------------VFE  477 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCSS------------------------------------------------CSS
T ss_pred             ccccCCccccccCCCCccccccccccchh------------------------------------------------hhc
Confidence            35668899999999998874332211000                                                001


Q ss_pred             cccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEE
Q 004005          597 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  676 (779)
Q Consensus       597 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  676 (779)
                      .+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+.  ++|+.|+|++|++++..|..|   .+|+.+
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l  552 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVL  552 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEE
Confidence            234789999999999988888899999999999999999977777666  889999999999998888665   478899


Q ss_pred             eccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCc
Q 004005          677 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSPATMPEASIGNEQDDNL  735 (779)
Q Consensus       677 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~-c~~~~~~~~~~~~~~~~~~~  735 (779)
                      ++++|++.|.|+.  ..   |..+...++...|+.+... |..|....+.++.+.....|
T Consensus       553 ~l~~Np~~C~c~~--~~---f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          553 DITHNKFICECEL--ST---FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             EEEEECCCCSSSC--CS---HHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred             EecCCCccccccc--HH---HHHHHHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence            9999999998873  22   2223334456666655443 99999888877776665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.5e-54  Score=487.36  Aligned_cols=558  Identities=20%  Similarity=0.200  Sum_probs=362.0

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI  132 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L  132 (779)
                      +++++|++++|.+    ....|.+|.++++|++|+|++|++.+..|.+|+++++|++|++++|++.+..|. .++++++|
T Consensus        33 ~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTC
T ss_pred             CcCcEEEccCCcc----CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccc
Confidence            3677777777777    333355677777777777777777766677777777777777777777644444 67777777


Q ss_pred             CEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEE
Q 004005          133 EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV  212 (779)
Q Consensus       133 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  212 (779)
                      ++|++++|.+++ +....+.++++|++|++++|.+.+..                           .|.. ..+++|++|
T Consensus       108 ~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~---------------------------~~~~-~~l~~L~~L  158 (606)
T 3t6q_A          108 KHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK---------------------------LPKG-FPTEKLKVL  158 (606)
T ss_dssp             CEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCC---------------------------CCTT-CCCTTCCEE
T ss_pred             cEeeccccCccc-CCcchhccCCcccEEECCCCcccccC---------------------------cccc-cCCcccCEE
Confidence            777777777664 22234566666666666666554311                           1222 225678888


Q ss_pred             EccCccCcccCChhhhhcCCCCc--EEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC
Q 004005          213 DLSHIKMNGEFPNWLLENNTKLE--TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM  290 (779)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~  290 (779)
                      ++++|.+.+..+.. ++.+++|+  +|++++|.+.+..+..+.. .+|++|++++|..   ++..+. .+..+....+..
T Consensus       159 ~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~-~l~~~~l~~l~~  232 (606)
T 3t6q_A          159 DFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFK-GLKNSTIQSLWL  232 (606)
T ss_dssp             ECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHH-HTTTCEEEEEEC
T ss_pred             EcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhh-hccccchhheec
Confidence            88888777544444 46777777  7777777777655544433 5677777776641   111111 122222222211


Q ss_pred             CCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCC--CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCc
Q 004005          291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG  368 (779)
Q Consensus       291 n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  368 (779)
                      ..+           ..+...         .++...+.++.  +|+.|++++|.+.+..+..|..+++|++|++++|.+. 
T Consensus       233 ~~~-----------~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-  291 (606)
T 3t6q_A          233 GTF-----------EDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-  291 (606)
T ss_dssp             CCC-----------TTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred             hhh-----------cccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence            111           011000         11222222222  5666777777666666666666677777777777666 


Q ss_pred             cCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCccCC--CC-
Q 004005          369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSL--PS-  444 (779)
Q Consensus       369 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~-  444 (779)
                      .+|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..  +. 
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  371 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ  371 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence            455566666777777777777665556666667777777777776654333 33666777777777777666543  22 


Q ss_pred             ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCc-cccCCCCCCEEEccCCcccccccccccCCCC
Q 004005          445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQ  523 (779)
Q Consensus       445 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  523 (779)
                      ...+++|+.|++++|.+.+..+. .|..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             cccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            22355666666666666444443 378888999999999988866554 4788889999999999988878888888899


Q ss_pred             CCEEEccCCcCCCCC---CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccC
Q 004005          524 LQLLDLSNNNLHGPI---PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL  600 (779)
Q Consensus       524 L~~L~l~~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (779)
                      |++|++++|++.+..   +..+..                                                     +++
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~-----------------------------------------------------l~~  477 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQT-----------------------------------------------------LGR  477 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGG-----------------------------------------------------CTT
T ss_pred             CCEEECCCCCCCccccccchhhcc-----------------------------------------------------CCC
Confidence            999999999886421   122222                                                     347


Q ss_pred             cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccC
Q 004005          601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  680 (779)
Q Consensus       601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  680 (779)
                      |++|++++|++++..|..|..+++|++|+|++|++++..|..|.++++| +|++++|++++..|..+..+++|+.|++++
T Consensus       478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ  556 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred             ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence            8899999999988888888889999999999999988888888889999 999999999888888888888999999999


Q ss_pred             CcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          681 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQ  731 (779)
Q Consensus       681 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~  731 (779)
                      |+++|.|+.  .++..|....   ....-+.....|..|....++.+.+.+
T Consensus       557 N~~~c~c~~--~~~~~w~~~~---~~~~~~~~~~~C~~p~~~~g~~l~~~~  602 (606)
T 3t6q_A          557 NPLDCTCSN--IYFLEWYKEN---MQKLEDTEDTLCENPPLLRGVRLSDVT  602 (606)
T ss_dssp             CCEECSGGG--HHHHHHHHHC---GGGEECGGGCBEEESGGGTTCBGGGCC
T ss_pred             CCccccCCc--HHHHHHHHhC---cccccCCCCCeeCCchHhCCCeeeeee
Confidence            999888773  1111111100   000001111248888888887665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-52  Score=473.07  Aligned_cols=518  Identities=23%  Similarity=0.251  Sum_probs=388.3

Q ss_pred             CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005           19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP   98 (779)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~   98 (779)
                      +++++|++++|.         +....+..+. .+++|++|++++|.+    ....|.+|.++++|++|+|++|.+.+..|
T Consensus        33 ~~l~~L~Ls~n~---------i~~~~~~~~~-~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           33 NSTECLEFSFNV---------LPTIQNTTFS-RLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             TTCCEEECTTCC---------CSEECTTTST-TCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred             CcCcEEEccCCc---------cCcCChhHhc-cCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccCh
Confidence            479999999999         7766677888 999999999999999    55567889999999999999999998889


Q ss_pred             hhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccccc
Q 004005           99 WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI  178 (779)
Q Consensus        99 ~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  178 (779)
                      ..|+++++|++|++++|++. .++...++++++|++|++++|.+++. ....+..+++|++|++++|.+.....      
T Consensus        99 ~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~------  170 (606)
T 3t6q_A           99 TALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSK------  170 (606)
T ss_dssp             TTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCC-CCCTTCCCTTCCEEECCSSCCCEECH------
T ss_pred             hhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCccccc-CcccccCCcccCEEEcccCcccccCh------
Confidence            99999999999999999998 55433799999999999999999852 22345558999999999888775433      


Q ss_pred             CCcccccEEecCCCCCCCCCCchhhcCCCCcc--EEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCC
Q 004005          179 APKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE--YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK  256 (779)
Q Consensus       179 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  256 (779)
                                            ..+..+++|+  +|++++|.+.+..|..+  ....|++|++++|...   +..+..+.
T Consensus       171 ----------------------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~  223 (606)
T 3t6q_A          171 ----------------------EDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLK  223 (606)
T ss_dssp             ----------------------HHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHHHTT
T ss_pred             ----------------------hhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhH---HHHhhhcc
Confidence                                  2333444444  45555555554333332  2344555555554311   11111122


Q ss_pred             c--cCEEEccCCcC--CCCCCccccccCC--CCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCC
Q 004005          257 R--LRQLDVSNNNI--RGHIPVKIGDVLP--SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV  330 (779)
Q Consensus       257 ~--L~~L~l~~n~i--~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~  330 (779)
                      +  ++.+.+....-  ...++...+..+.  +++.+++++|.+++..+..|..+++|++|++++|.+. .+|..+ ..++
T Consensus       224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~  301 (606)
T 3t6q_A          224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLS  301 (606)
T ss_dssp             TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCT
T ss_pred             ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccc
Confidence            2  22222221100  0022222222222  6778888888887777777888888888888888877 676654 3577


Q ss_pred             CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC-ccccCCCCCCEEEccCCCCCCCc--CccccCCCCCcEE
Q 004005          331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYI  407 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L  407 (779)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..  +..+..+++|++|
T Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  381 (606)
T 3t6q_A          302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL  381 (606)
T ss_dssp             TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred             cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence            78888888887777666677777778888887777764443 34777777777777777776544  5566677777777


Q ss_pred             EccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCC
Q 004005          408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  487 (779)
Q Consensus       408 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~  487 (779)
                      ++++|.+.+..+..+..+++|++|++++|++.                       +..+...+..+++|+.|++++|.+.
T Consensus       382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLK-----------------------VKDAQSPFQNLHLLKVLNLSHSLLD  438 (606)
T ss_dssp             ECCSCSCEEECTTTTTTCTTCSEEECTTCCEE-----------------------CCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred             ECCCCcCCcCCHHHhcCCccCCeEECCCCcCC-----------------------CcccchhhhCcccCCEEECCCCccC
Confidence            77777776666666677777777777776665                       3333444788999999999999999


Q ss_pred             CccCccccCCCCCCEEEccCCccccc---ccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhh
Q 004005          488 GSIPDWVDGLSQLSHLILGHNNLEGE---VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF  564 (779)
Q Consensus       488 ~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (779)
                      +..|..+..+++|+.|++++|++++.   .+..+..+++|+.|++++|.+++..|..|..++                  
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------  500 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK------------------  500 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT------------------
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc------------------
Confidence            88899999999999999999999863   235688999999999999999988887776654                  


Q ss_pred             hhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCC
Q 004005          565 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS  644 (779)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  644 (779)
                                                         +|++|++++|++++..|..+..+++| .|++++|++++..|..+.
T Consensus       501 -----------------------------------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          501 -----------------------------------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             -----------------------------------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             -----------------------------------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence                                               79999999999999999999999999 999999999998898999


Q ss_pred             CCCCCCEEECCCCcCCCCCc
Q 004005          645 NLKHVESLDLSNNKLNGKIP  664 (779)
Q Consensus       645 ~l~~L~~L~L~~N~l~~~~~  664 (779)
                      .+++|++|++++|++.+..+
T Consensus       545 ~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          545 ILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             HHHTSSEEECTTCCEECSGG
T ss_pred             cCCCCCEEeCCCCCccccCC
Confidence            99999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.4e-52  Score=472.52  Aligned_cols=553  Identities=20%  Similarity=0.202  Sum_probs=334.3

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCC
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI  132 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L  132 (779)
                      +++++|++++|.+    .+..+.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|. .++++++|
T Consensus        32 ~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTC
T ss_pred             CCcCEEECCCCCc----CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccC
Confidence            4566666666666    222333556666666666666666655555666666666666666666533343 56666666


Q ss_pred             CEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEE
Q 004005          133 EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV  212 (779)
Q Consensus       133 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  212 (779)
                      ++|++++|.+++. +...++++++|++|++++|.+.+                           ..+|..++.+++|++|
T Consensus       107 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~---------------------------~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A          107 ENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHS---------------------------CKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             CEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCC---------------------------CCCCGGGGTCTTCCEE
T ss_pred             CEEEccCCccccc-cccccCCCCCCCEEeCCCCcccc---------------------------eechHhHhhcCCCCEE
Confidence            6666666665532 22235555555555555444331                           1235556666666666


Q ss_pred             EccCccCcccCChhhhhcCCC----CcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEEC
Q 004005          213 DLSHIKMNGEFPNWLLENNTK----LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN  288 (779)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l  288 (779)
                      ++++|.+.+..+..+ +.+.+    +++|++++|.+.+..+..+... +|++|++++|.+.+.                 
T Consensus       159 ~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~-----------------  219 (606)
T 3vq2_A          159 DLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN-----------------  219 (606)
T ss_dssp             ECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH-----------------
T ss_pred             EccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh-----------------
Confidence            666666664433332 23332    2355565555554443333332 555555555544322                 


Q ss_pred             CCCCCCcccCccccCCCCCCEEEccCCcCcc-----ccchhhhhCCC--CCCEEEc-cCcccCccCcccCCCCCCCCEEE
Q 004005          289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTG-----EIPEHLAVGCV--NLQFLAL-SNNNLQGHLFSRNFNLTNLQWLQ  360 (779)
Q Consensus       289 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~~~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~  360 (779)
                             ..|..+..++.|+.+++..+.+..     .++...+.++.  .++.+++ ..+.+.+..+. +..+++|+.|+
T Consensus       220 -------~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~  291 (606)
T 3vq2_A          220 -------IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS  291 (606)
T ss_dssp             -------HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred             -------HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence                   233334444444444433221110     11111111121  3445555 44555554444 66666777777


Q ss_pred             ccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCcc
Q 004005          361 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG  440 (779)
Q Consensus       361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  440 (779)
                      +++|.+.. .| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|+..+..  .+..+++|++|++++|.+++
T Consensus       292 l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          292 LAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             EESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred             ecCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence            77776653 33 566666777777777766 34553 3 6677777777776443222  45566777777777776654


Q ss_pred             CC--CC-ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccC-ccccCCCCCCEEEccCCcccccccc
Q 004005          441 SL--PS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV  516 (779)
Q Consensus       441 ~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~  516 (779)
                      ..  +. ...+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+.
T Consensus       365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          365 SGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             CcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            42  22 2235667777777766643 44 337888999999999999887766 6788899999999999999888888


Q ss_pred             cccCCCCCCEEEccCCcCCC-CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005          517 QLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  595 (779)
Q Consensus       517 ~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (779)
                      .+..+++|++|++++|.+.+ .+|..+..++                                                 
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------------------------------  473 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-------------------------------------------------  473 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------------------------------------
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCC-------------------------------------------------
Confidence            88899999999999998876 3565555443                                                 


Q ss_pred             ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC-CCc
Q 004005          596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLE  674 (779)
Q Consensus       596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~  674 (779)
                          +|++|++++|++++..|..+.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|+
T Consensus       474 ----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          474 ----NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA  548 (606)
T ss_dssp             ----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred             ----CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence                7999999999999888888999999999999999999888999999999999999999998 6676788886 699


Q ss_pred             EEeccCCcCcccCCCCccccccCCcccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          675 VFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC-GLPLPICRSPATMPEASIGNEQDDN  734 (779)
Q Consensus       675 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c-~~~l~~c~~~~~~~~~~~~~~~~~~  734 (779)
                      +|++++|++.|.|+.  .++..|..    .++... +.....|..|....++.+.+++...
T Consensus       549 ~l~l~~N~~~c~c~~--~~~~~~l~----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          549 FFNLTNNSVACICEH--QKFLQWVK----EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             EEECCSCCCCCSSTT--HHHHTTTT----TSSSSBSSGGGCCCC-----------------
T ss_pred             EEEccCCCcccCCcc--HHHHHHHH----cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence            999999999998875  22222221    111111 1111248888888887777776554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-50  Score=476.44  Aligned_cols=540  Identities=19%  Similarity=0.190  Sum_probs=417.7

Q ss_pred             cEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEE
Q 004005           56 KYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  135 (779)
Q Consensus        56 ~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L  135 (779)
                      +..+.+++++     ..+|.   -.++|++|+|++|.+++..|..|.++++|++|++++|...+.++...++++++|++|
T Consensus         7 ~~~dcs~~~L-----~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A            7 RIAFYRFCNL-----TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEEESCCCS-----SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             eEEEccCCCC-----CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            4678888888     44554   347899999999999988899999999999999999977667855589999999999


Q ss_pred             EccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEcc
Q 004005          136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS  215 (779)
Q Consensus       136 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  215 (779)
                      ++++|.+++. ....+.++++|++|++++|.+.+...                          ....+..+++|++|+++
T Consensus        79 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------~~~~~~~L~~L~~L~Ls  131 (844)
T 3j0a_A           79 DLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVL--------------------------KDGYFRNLKALTRLDLS  131 (844)
T ss_dssp             ECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCS--------------------------TTCCCSSCSSCCEEEEE
T ss_pred             ECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccc--------------------------cCccccccCCCCEEECC
Confidence            9999998754 33578888888888888776653211                          01235667788888888


Q ss_pred             CccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCC--CccCEEEccCCcCCCCCCccccccCC------CCcEEE
Q 004005          216 HIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH--KRLRQLDVSNNNIRGHIPVKIGDVLP------SLYVFN  287 (779)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~~l~------~L~~L~  287 (779)
                      +|.+.+..+...++++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..|..+.. ++      .|+.|+
T Consensus       132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~  210 (844)
T 3j0a_A          132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILD  210 (844)
T ss_dssp             SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEB
T ss_pred             CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEe
Confidence            8888765554445788888888888888777666666555  67777777777776555544332 11      255555


Q ss_pred             CCCCCCCcccCccccCC---CCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCC--CCCCEEEcc
Q 004005          288 NSMNALDGSIPSSFGNM---KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL--TNLQWLQLE  362 (779)
Q Consensus       288 l~~n~~~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~  362 (779)
                      +++|.+++..+..+...   ..++.+.++.+.+..                .+..+.+.......|.++  ++|+.|+++
T Consensus       211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls  274 (844)
T 3j0a_A          211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----------------GFGFHNIKDPDQNTFAGLARSSVRHLDLS  274 (844)
T ss_dssp             CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----------------SSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred             cCCCcCchhHHHHHHhhcCcccccceecccccccc----------------cccccccCCCChhhhhccccCCccEEECC
Confidence            55555544444433221   334444444322210                011233333444455544  789999999


Q ss_pred             CCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCC
Q 004005          363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL  442 (779)
Q Consensus       363 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  442 (779)
                      +|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..
T Consensus       275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  354 (844)
T 3j0a_A          275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ  354 (844)
T ss_dssp             TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred             CCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence            99999888899999999999999999999888889999999999999999999888999999999999999999998877


Q ss_pred             CCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccc-cccccC
Q 004005          443 PSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCE  520 (779)
Q Consensus       443 ~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~  520 (779)
                      +..+. +++|+.|++++|.+.+      +..+++|+.|++++|+++. +|..   ..+++.|++++|++++.. +..+..
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~  424 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLR  424 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred             hhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhc
Confidence            77665 8899999999999853      3347899999999999984 4543   467999999999998643 233568


Q ss_pred             CCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccC
Q 004005          521 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL  600 (779)
Q Consensus       521 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (779)
                      +++|+.|++++|++++..+....                                                    ..+++
T Consensus       425 l~~L~~L~Ls~N~l~~~~~~~~~----------------------------------------------------~~~~~  452 (844)
T 3j0a_A          425 VPHLQILILNQNRFSSCSGDQTP----------------------------------------------------SENPS  452 (844)
T ss_dssp             CTTCCEEEEESCCCCCCCSSSSS----------------------------------------------------CSCTT
T ss_pred             CCccceeeCCCCccccccccccc----------------------------------------------------ccCCc
Confidence            99999999999999865433111                                                    01347


Q ss_pred             cceEEccCCccc-----ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005          601 LSGLDLSCNKLI-----GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  675 (779)
Q Consensus       601 L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  675 (779)
                      |+.|++++|.+.     +..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+.  ++|+.
T Consensus       453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~  530 (844)
T 3j0a_A          453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI  530 (844)
T ss_dssp             CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred             cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence            999999999997     34456789999999999999999999999999999999999999999987776665  89999


Q ss_pred             EeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005          676 FSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP  714 (779)
Q Consensus       676 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  714 (779)
                      ||+++|++++..|..+   ..+..+.+.+|||.|+|++.
T Consensus       531 L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          531 LDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             EEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred             EECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence            9999999999988754   47788899999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.3e-50  Score=456.87  Aligned_cols=534  Identities=19%  Similarity=0.185  Sum_probs=411.3

Q ss_pred             CCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCC
Q 004005           54 SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE  133 (779)
Q Consensus        54 ~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~  133 (779)
                      .-++++.+++.+     ..+|..+.  ++|++|+|++|.+++..+..|+++++|++|++++|++. .++...|+++++|+
T Consensus        12 ~~~~~~c~~~~l-----~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~   83 (606)
T 3vq2_A           12 PNITYQCMDQKL-----SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLS   83 (606)
T ss_dssp             TTTEEECTTSCC-----SSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred             CCCceEccCCCc-----ccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcC
Confidence            346789988888     45555443  78999999999998877889999999999999999998 45443789999999


Q ss_pred             EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005          134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD  213 (779)
Q Consensus       134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  213 (779)
                      +|++++|.+++. ....++++++|++|++++|.+...                            .+..++.+++|++|+
T Consensus        84 ~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~----------------------------~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A           84 NLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASL----------------------------ESFPIGQLITLKKLN  134 (606)
T ss_dssp             EEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCS----------------------------SSSCCTTCTTCCEEE
T ss_pred             EeECCCCccccc-ChhhcCCcccCCEEEccCCccccc----------------------------cccccCCCCCCCEEe
Confidence            999999988753 234566666666666666654421                            112234445555555


Q ss_pred             ccCccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCC----CcEEEC
Q 004005          214 LSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS----LYVFNN  288 (779)
Q Consensus       214 l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l  288 (779)
                      +++|.+.+ .+|.                         .+..+++|++|++++|.+++..+..+.. +++    +.++++
T Consensus       135 L~~n~l~~~~lp~-------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l  188 (606)
T 3vq2_A          135 VAHNFIHSCKLPA-------------------------YFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDM  188 (606)
T ss_dssp             CCSSCCCCCCCCG-------------------------GGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEEC
T ss_pred             CCCCcccceechH-------------------------hHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeec
Confidence            55555543 2343                         4444455555555555554322222221 222    346777


Q ss_pred             CCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCc------cCcccCCCCC--CCCEEE
Q 004005          289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG------HLFSRNFNLT--NLQWLQ  360 (779)
Q Consensus       289 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~--~L~~L~  360 (779)
                      ++|.+++..+..+... +|+.|++++|.+.+......+..++.++.+++..+.+..      .....+.++.  .++.++
T Consensus       189 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             cCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence            7777775555555544 899999999998755555566789999998886554332      1112222222  456677


Q ss_pred             c-cCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005          361 L-EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       361 L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  439 (779)
                      + ..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..
T Consensus       268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~  341 (606)
T 3vq2_A          268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGS  341 (606)
T ss_dssp             ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSC
T ss_pred             ccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCc
Confidence            7 66777777666 8999999999999999974 45 788999999999999999 4666 45 9999999999999665


Q ss_pred             cCCCCccCcccccEEEccCccccccc--CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-c
Q 004005          440 GSLPSCFHPLSIKQVHLSKNMLHGQL--KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-V  516 (779)
Q Consensus       440 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~  516 (779)
                      +.. ....+++|+.|++++|.+.+..  +. .+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..+ .
T Consensus       342 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~  418 (606)
T 3vq2_A          342 ISF-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS  418 (606)
T ss_dssp             EEC-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred             cch-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh
Confidence            443 3446889999999999986542  33 38889999999999999985 66889999999999999999998776 6


Q ss_pred             cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccc
Q 004005          517 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK  596 (779)
Q Consensus       517 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (779)
                      .+..+++|+.|++++|.+.+..|..+..++                                                  
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------------------  448 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLT--------------------------------------------------  448 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCT--------------------------------------------------
T ss_pred             hhhccccCCEEECcCCCCCccchhhhcCCC--------------------------------------------------
Confidence            789999999999999999988887776544                                                  


Q ss_pred             cccCcceEEccCCcccc-cCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005          597 VLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  675 (779)
Q Consensus       597 ~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  675 (779)
                         +|++|++++|++++ ..|..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..|..+++|++
T Consensus       449 ---~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          449 ---SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             ---TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             ---CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence               79999999999997 47888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcCcccCCCCccccc-cCCcccccCCCCCCCCCCC
Q 004005          676 FSVAYNNLSGEIPEWKAQFA-TFNESSYEGNTFLCGLPLP  714 (779)
Q Consensus       676 L~l~~N~l~~~~p~~~~~~~-~~~~~~~~~n~~~c~~~l~  714 (779)
                      ||+++|+++ .+|..+..+. ++..+.+.+||+.|+|+..
T Consensus       526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            999999999 5666677776 5899999999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=423.27  Aligned_cols=515  Identities=20%  Similarity=0.239  Sum_probs=342.9

Q ss_pred             CcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCE
Q 004005           55 LKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE  134 (779)
Q Consensus        55 L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~  134 (779)
                      .++.+.++.++     ..+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|++. .++...++++++|++
T Consensus         9 ~~~~~c~~~~l-----~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~   80 (570)
T 2z63_A            9 NITYQCMELNF-----YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLST   80 (570)
T ss_dssp             TTEEECCSSCC-----SSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCc-----cccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCE
Confidence            34566665555     34443332  46778888888777666667778888888888888777 454446777888888


Q ss_pred             EEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEc
Q 004005          135 LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDL  214 (779)
Q Consensus       135 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  214 (779)
                      |++++|.++. ++...+.++++|++|++++|.+....                            +..++.+++|++|++
T Consensus        81 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~----------------------------~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           81 LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLE----------------------------NFPIGHLKTLKELNV  131 (570)
T ss_dssp             EECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCST----------------------------TCSCTTCTTCCEEEC
T ss_pred             EeCcCCcCCc-cCHhhhcCccccccccccccccccCC----------------------------CccccccccccEEec
Confidence            8888777664 33345666667776666666554211                            112455667888888


Q ss_pred             cCccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCcc----CEEEccCCcCCCCCCccccccCCCCcEEECC
Q 004005          215 SHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL----RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS  289 (779)
Q Consensus       215 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~  289 (779)
                      ++|.+.+ .+|..+ +++++|++|++++|.+.+..+..+..+++|    ++|++++|.+.+..+ ..+... +|+.|+++
T Consensus       132 ~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~  208 (570)
T 2z63_A          132 AHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLR  208 (570)
T ss_dssp             CSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEE
T ss_pred             CCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecc
Confidence            8887765 356554 567777777777777766555555555555    566666666653222 222212 45555555


Q ss_pred             CCCCC-cccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCC--CCCEEEccCC-c
Q 004005          290 MNALD-GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT--NLQWLQLEGN-R  365 (779)
Q Consensus       290 ~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n-~  365 (779)
                      +|... ...+..+..++.++...+....+..         .          ..+.......+..++  .++.++++++ .
T Consensus       209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~----------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  269 (570)
T 2z63_A          209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------E----------GNLEKFDKSALEGLCNLTIEEFRLAYLDY  269 (570)
T ss_dssp             SCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------C----------SSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred             cccccccchhhhhcCccccceeeeccccccC---------c----------hhhhhcchhhhccccccchhhhhhhcchh
Confidence            54322 1223334444444444332221110         0          000111111122222  2344555555 4


Q ss_pred             CCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCc
Q 004005          366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC  445 (779)
Q Consensus       366 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  445 (779)
                      +.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. 
T Consensus       270 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-  343 (570)
T 2z63_A          270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-  343 (570)
T ss_dssp             EESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred             hhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence            44455555666666666666666665 355555555 6666666666665 2332  3556666666666666544433 


Q ss_pred             cCcccccEEEccCccccccc--CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-ccccCCC
Q 004005          446 FHPLSIKQVHLSKNMLHGQL--KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELN  522 (779)
Q Consensus       446 ~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~  522 (779)
                      ..+++|+.|++++|.+.+..  +. .+.++++|++|++++|.+.+..+. +..+++|+.|++++|.+++..+ ..+..++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             ccCCCCCEEeCcCCccCccccccc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence            44566777777776664432  22 377889999999999999865544 8899999999999999987655 5688999


Q ss_pred             CCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcc
Q 004005          523 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS  602 (779)
Q Consensus       523 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  602 (779)
                      +|++|++++|.+.+..|..+..++                                                     +|+
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~  448 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLS-----------------------------------------------------SLE  448 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCT-----------------------------------------------------TCC
T ss_pred             CCCEEeCcCCcccccchhhhhcCC-----------------------------------------------------cCc
Confidence            999999999999887777665543                                                     799


Q ss_pred             eEEccCCccc-ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005          603 GLDLSCNKLI-GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  681 (779)
Q Consensus       603 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  681 (779)
                      +|++++|++. +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            9999999997 568889999999999999999999888999999999999999999999888888999999999999999


Q ss_pred             cCcccCCC
Q 004005          682 NLSGEIPE  689 (779)
Q Consensus       682 ~l~~~~p~  689 (779)
                      +++|.||.
T Consensus       529 ~~~~~~~~  536 (570)
T 2z63_A          529 PWDCSCPR  536 (570)
T ss_dssp             CBCCCTTT
T ss_pred             cccCCCcc
Confidence            99999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.6e-45  Score=408.62  Aligned_cols=485  Identities=19%  Similarity=0.191  Sum_probs=312.3

Q ss_pred             CCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCC
Q 004005           54 SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE  133 (779)
Q Consensus        54 ~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~  133 (779)
                      ...+.+.+++.+     ..+|+.+.  ++|++|++++|++++..|..|.++++|++|++++|++.+ ++...++++++|+
T Consensus         6 ~~~~c~~~~~~l-----~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~   77 (549)
T 2z81_A            6 ASGVCDGRSRSF-----TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLE   77 (549)
T ss_dssp             TTSEEECTTSCC-----SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCC
T ss_pred             CCceEECCCCcc-----ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCC
Confidence            334456666666     45554443  677778888777776666777777777777777777763 3333667777777


Q ss_pred             EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005          134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD  213 (779)
Q Consensus       134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  213 (779)
                      +|++++|.+++. +                                                    +..++.+++|++|+
T Consensus        78 ~L~Ls~n~l~~~-~----------------------------------------------------~~~~~~l~~L~~L~  104 (549)
T 2z81_A           78 HLDLSDNHLSSL-S----------------------------------------------------SSWFGPLSSLKYLN  104 (549)
T ss_dssp             EEECTTSCCCSC-C----------------------------------------------------HHHHTTCTTCCEEE
T ss_pred             EEECCCCccCcc-C----------------------------------------------------HHHhccCCCCcEEE
Confidence            777776665431 1                                                    12233334444444


Q ss_pred             ccCccCcc-cCChhhhhcCCCCcEEEcCCCcCcC-CCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCC
Q 004005          214 LSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN  291 (779)
Q Consensus       214 l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n  291 (779)
                      +++|.+.+ ..|.. ++++++|++|++++|...+ ..+..+..++                         +|++|++++|
T Consensus       105 Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-------------------------~L~~L~L~~n  158 (549)
T 2z81_A          105 LMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLT-------------------------SLNELEIKAL  158 (549)
T ss_dssp             CTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCC-------------------------EEEEEEEEET
T ss_pred             CCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhccc-------------------------ccCeeeccCC
Confidence            44444432 11222 2455555666655555222 2223444444                         4555555555


Q ss_pred             CCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccC---cccCCCCCCCCEEEccCCcCCc
Q 004005          292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL---FSRNFNLTNLQWLQLEGNRFVG  368 (779)
Q Consensus       292 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~  368 (779)
                      .+++..|..+..+++|++|++++|.+. .++..++..+++|++|++++|.+.+..   ......+++|+.|++++|.+.+
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred             cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence            555555555666666666666666665 555555555666666666666665432   1122345666777776666554


Q ss_pred             cCC----ccccCCCCCCEEEccCCCCCCCc------CccccCCCCCcEEEccCCcccCCc-----CcccCCCCCCcEEEc
Q 004005          369 EIP----QSLSKCSSLEGLYLNNNSLLGKI------PRWLGNLTRLQYIIMPNNHLEGPI-----PVEFCQLDSLQILDI  433 (779)
Q Consensus       369 ~~~----~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l  433 (779)
                      ..+    ..+..+++|+.+++++|.+.+..      ...+..+.+++.+.+.++.+....     +..+...++|+.|++
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l  317 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV  317 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence            322    23345566677777666554321      123455666777777766654321     111223456777777


Q ss_pred             cCCcCccCCCCcc-CcccccEEEccCcccccccCc--ccccCCCCccEEeccCccCCCccC--ccccCCCCCCEEEccCC
Q 004005          434 SDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKR--GTFFNCSSLVTLDLSYNRLNGSIP--DWVDGLSQLSHLILGHN  508 (779)
Q Consensus       434 ~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n  508 (779)
                      ++|.+.......+ .+++|+.|++++|.+.+.++.  ..+..+++|++|++++|++++..+  ..+..+++|+.|++++|
T Consensus       318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            7777764333332 367777777777777665432  236778999999999999986532  45788999999999999


Q ss_pred             cccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeecc
Q 004005          509 NLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKN  588 (779)
Q Consensus       509 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (779)
                      +++ .+|..+..+++|++|++++|.+++.. ..+                                              
T Consensus       398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~----------------------------------------------  429 (549)
T 2z81_A          398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI----------------------------------------------  429 (549)
T ss_dssp             CCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS----------------------------------------------
T ss_pred             CCc-cCChhhcccccccEEECCCCCccccc-chh----------------------------------------------
Confidence            998 56777888899999999999886422 111                                              


Q ss_pred             ceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCccccc
Q 004005          589 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV  668 (779)
Q Consensus       589 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  668 (779)
                               +++|++|++++|++++..    ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..+.
T Consensus       430 ---------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  494 (549)
T 2z81_A          430 ---------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD  494 (549)
T ss_dssp             ---------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred             ---------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence                     236899999999998642    57889999999999998 5565 46789999999999999988888899


Q ss_pred             CCCCCcEEeccCCcCcccCCC
Q 004005          669 ELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       669 ~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      .+++|+.|++++|+++|.||.
T Consensus       495 ~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          495 RLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             GCTTCCEEECCSSCBCCCHHH
T ss_pred             cCcccCEEEecCCCccCCCcc
Confidence            999999999999999999883

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=406.62  Aligned_cols=465  Identities=21%  Similarity=0.198  Sum_probs=387.0

Q ss_pred             cccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEE
Q 004005          183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLD  262 (779)
Q Consensus       183 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  262 (779)
                      .++.|++ +.+.+++..+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+.+..+..+..+++|++|+
T Consensus        29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            7999999 667777777788999999999999999988544444 57899999999999999988888999999999999


Q ss_pred             ccCCcCCCCCCccccccCCCCcEEECCCCCCCc-ccCccccCCCCCCEEEccCCcCccccchhhhhCCCCC----CEEEc
Q 004005          263 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL----QFLAL  337 (779)
Q Consensus       263 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L----~~L~l  337 (779)
                      +++|.++ .++...+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+ ++...+..+++|    +.+++
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhccc
Confidence            9999998 5555445558999999999999987 468999999999999999999984 443333457777    89999


Q ss_pred             cCcccCccCcccCCCCCCCCEEEccCCcCCc-cCCccccCCCC--------------------------------CCEEE
Q 004005          338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCSS--------------------------------LEGLY  384 (779)
Q Consensus       338 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~--------------------------------L~~L~  384 (779)
                      ++|.+.+..+..+... +|+.|++++|.... ..+..+..++.                                ++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9999998887777655 79999998874321 01111222222                                34555


Q ss_pred             ccCC-CCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccc
Q 004005          385 LNNN-SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  463 (779)
Q Consensus       385 l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  463 (779)
                      +.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+... +. ..+++|+.|++++|.+.+
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~-~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT-LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB-CBCSSCCEEEEESCBSCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc-ccccccCEEeCcCCcccc
Confidence            5555 555667778888999999999999988 567778888 999999999998843 33 467899999999999876


Q ss_pred             ccCcccccCCCCccEEeccCccCCCcc--CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC-c
Q 004005          464 QLKRGTFFNCSSLVTLDLSYNRLNGSI--PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP-P  540 (779)
Q Consensus       464 ~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~  540 (779)
                      ..+.   ..+++|++|++++|.+++..  +..+.++++|+.|++++|.+++..+. +..+++|+.|++++|.+.+..+ .
T Consensus       340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            5554   57899999999999998654  67788999999999999999866554 8999999999999999887655 3


Q ss_pred             ccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccccc
Q 004005          541 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG  620 (779)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~  620 (779)
                      .+..                                                     +++|++|++++|++.+..|..+.
T Consensus       416 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          416 VFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             TTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTTT
T ss_pred             hhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhhh
Confidence            3433                                                     34799999999999998999999


Q ss_pred             CCCCCCEEECcccccc-cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCc
Q 004005          621 NLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE  699 (779)
Q Consensus       621 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~  699 (779)
                      ++++|++|++++|+++ +..|..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+.++..
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999999998 578899999999999999999999998999999999999999999999988888889999999


Q ss_pred             ccccCCCCCCCCCC
Q 004005          700 SSYEGNTFLCGLPL  713 (779)
Q Consensus       700 ~~~~~n~~~c~~~l  713 (779)
                      +.+.+|++.|+|+.
T Consensus       523 L~l~~N~~~~~~~~  536 (570)
T 2z63_A          523 IWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECCSSCBCCCTTT
T ss_pred             EEecCCcccCCCcc
Confidence            99999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-42  Score=398.96  Aligned_cols=560  Identities=21%  Similarity=0.207  Sum_probs=303.3

Q ss_pred             CCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcc-cccccCCCCCCEEeccCCCCCCCcc
Q 004005           20 SLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTL-DQGLCSLVHLQELYIASNDLRGSLP   98 (779)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~~~~   98 (779)
                      ++++|||++|.         +....+.+|. .+++|++|+|++|++     ..+ +.+|.++++|++|+|++|++++..+
T Consensus        53 ~~~~LdLs~N~---------i~~l~~~~f~-~l~~L~~L~Ls~N~i-----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           53 STKNLDLSFNP---------LRHLGSYSFF-SFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             TCCEEECTTSC---------CCEECTTTTT-TCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCEEEeeCCC---------CCCCCHHHHh-CCCCCCEEECCCCcC-----CCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            57777777776         5544445566 777777777777776     223 3356677777777777777765555


Q ss_pred             hhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccccc
Q 004005           99 WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI  178 (779)
Q Consensus        99 ~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  178 (779)
                      ..|.++++|++|++++|++. .++...|+++++|++|++++|.+++......+..+++|++|++++|++.+.....+..+
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             HHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence            66777777777777777776 45554677777777777777776543333456667777777777777665544332222


Q ss_pred             CCcc-cccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCc
Q 004005          179 APKF-QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR  257 (779)
Q Consensus       179 ~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  257 (779)
                      .... ....+++ ..+.+....+.. .....++.+++.++......+...+..+..++...+..+......         
T Consensus       197 ~~l~~~~~~~~l-s~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~---------  265 (635)
T 4g8a_A          197 HQMPLLNLSLDL-SLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG---------  265 (635)
T ss_dssp             HTCTTCCCEEEC-TTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC---------
T ss_pred             hhhhhhhhhhhc-ccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc---------
Confidence            2111 2233444 222222222211 122234445555444333333333334444444333221111000         


Q ss_pred             cCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCC---cccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCE
Q 004005          258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD---GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF  334 (779)
Q Consensus       258 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  334 (779)
                               .+. ............+....+..+...   ...+..+..+.+++.+.+.++.+. .++            
T Consensus       266 ---------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~------------  322 (635)
T 4g8a_A          266 ---------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK------------  322 (635)
T ss_dssp             ---------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG------------
T ss_pred             ---------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc------------
Confidence                     000 000000111122222222221111   111222333344444444444443 222            


Q ss_pred             EEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcc
Q 004005          335 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL  414 (779)
Q Consensus       335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  414 (779)
                                    .+.....++.|++.+|.+....+.   .++.|+.+++..|.....  .....+++|+.++++.|.+
T Consensus       323 --------------~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l  383 (635)
T 4g8a_A          323 --------------DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGL  383 (635)
T ss_dssp             --------------GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCC
T ss_pred             --------------ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhcccc
Confidence                          122334444555554444432221   233455555555544321  1223455556666655554


Q ss_pred             cC--CcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCcc-C
Q 004005          415 EG--PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI-P  491 (779)
Q Consensus       415 ~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~  491 (779)
                      ..  ..+..+..+.+|+.+++..+........                         +..+++|+.++++.+...... +
T Consensus       384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-------------------------~~~l~~L~~l~l~~~~~~~~~~~  438 (635)
T 4g8a_A          384 SFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-------------------------FLGLEQLEHLDFQHSNLKQMSEF  438 (635)
T ss_dssp             BEEEECCHHHHSCSCCCEEECCSCSEEEECSC-------------------------CTTCTTCCEEECTTSEEESTTSS
T ss_pred             ccccccccchhhhhhhhhhhcccccccccccc-------------------------ccccccccchhhhhccccccccc
Confidence            32  2233444566666776666655432222                         333444444444444433222 2


Q ss_pred             ccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCC-CCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005          492 DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  570 (779)
Q Consensus       492 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (779)
                      ..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..+                         
T Consensus       439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-------------------------  493 (635)
T 4g8a_A          439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-------------------------  493 (635)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-------------------------
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc-------------------------
Confidence            23444555555555555555555555555555666666555432 2233333332                         


Q ss_pred             cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCC
Q 004005          571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE  650 (779)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  650 (779)
                                                  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+
T Consensus       494 ----------------------------~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          494 ----------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             ----------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ----------------------------cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence                                        3678888888888888888899999999999999999988888999999999


Q ss_pred             EEECCCCcCCCCCcccccCC-CCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          651 SLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGN  729 (779)
Q Consensus       651 ~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~  729 (779)
                      +|+|++|++++..|..|..+ ++|++|++++|+++|.|..  .++..|..-   .....-+.....|..|....++++.+
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~--~~~~~wl~~---~~~~~~~~~~~~C~~P~~~~g~~l~~  620 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH--QSFLQWIKD---QRQLLVEVERMECATPSDKQGMPVLS  620 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG--HHHHHHHHH---TTTTBSCGGGCBBCSSTTTTTCBGGG
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc--HHHHHHHHh---CCCccCCCCCceeCCchHHCCCEeee
Confidence            99999999999999999887 6899999999999999863  233322111   11111111122499999999988777


Q ss_pred             CC
Q 004005          730 EQ  731 (779)
Q Consensus       730 ~~  731 (779)
                      ++
T Consensus       621 ~~  622 (635)
T 4g8a_A          621 LN  622 (635)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.4e-43  Score=394.30  Aligned_cols=466  Identities=17%  Similarity=0.165  Sum_probs=308.8

Q ss_pred             CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005           19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP   98 (779)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~   98 (779)
                      ++|++|++++|.         +.+..+..+. .+++|++|++++|.+    .+..|++|.++++|++|++++|.+.+..+
T Consensus        26 ~~L~~L~Ls~n~---------l~~~~~~~~~-~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           26 AAMKSLDLSFNK---------ITYIGHGDLR-ACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             TTCCEEECCSSC---------CCEECSSTTS-SCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             CCccEEECcCCc---------cCccChhhhh-cCCcccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCH
Confidence            355555555555         3433344444 555555555555555    22223445555555555555555554444


Q ss_pred             hhhcCCCCCCEEEcCCCcccC-CCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccc
Q 004005           99 WCMANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL  177 (779)
Q Consensus        99 ~~~~~l~~L~~L~L~~n~l~~-~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  177 (779)
                      ..|+++++|++|++++|++.+ .+|. .++++++|++|++++|.+.+.++...+.++++|++|++++|.+          
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----------  160 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL----------  160 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC----------
T ss_pred             HHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc----------
Confidence            445555555555555555542 1222 4555555555555555433333333444555555555554444          


Q ss_pred             cCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCC---CcCcCC
Q 004005          178 IAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF---RLPIHS  254 (779)
Q Consensus       178 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~  254 (779)
                                        ++..|..+..+++|++|+++.+... .+|.++++.+++|++|++++|.+.+..   ......
T Consensus       161 ------------------~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  221 (549)
T 2z81_A          161 ------------------RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV  221 (549)
T ss_dssp             ------------------CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred             ------------------cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence                              4445566667777888888777765 456666667788888888888777642   112345


Q ss_pred             CCccCEEEccCCcCCCCCCcccc---ccCCCCcEEECCCCCCCccc------CccccCCCCCCEEEccCCcCccc-----
Q 004005          255 HKRLRQLDVSNNNIRGHIPVKIG---DVLPSLYVFNNSMNALDGSI------PSSFGNMKFLQILDLSNNHLTGE-----  320 (779)
Q Consensus       255 ~~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~Ls~n~i~~~-----  320 (779)
                      +++|++|++++|.+++..+..+.   ..+++++.+++++|.+.+..      ...+..+++|+.|++.++.+...     
T Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~  301 (549)
T 2z81_A          222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD  301 (549)
T ss_dssp             CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred             hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence            67788888888877644333221   23567888888887765421      12356677888888888876521     


Q ss_pred             cchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC---ccccCCCCCCEEEccCCCCCCCcC--
Q 004005          321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP---QSLSKCSSLEGLYLNNNSLLGKIP--  395 (779)
Q Consensus       321 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~--  395 (779)
                      ++ ..+...++|+.|++++|.+.......+..+++|++|++++|++.+..|   ..+..+++|++|++++|.+.+..+  
T Consensus       302 l~-~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  380 (549)
T 2z81_A          302 LS-TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG  380 (549)
T ss_dssp             CC-HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred             ch-hhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence            11 122335788888888888875443333578888899998888886543   236778889999999988875432  


Q ss_pred             ccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCC
Q 004005          396 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS  475 (779)
Q Consensus       396 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  475 (779)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++......  +++|+.|++++|.+.+.     ...+++
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~-----~~~l~~  452 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF-----SLFLPR  452 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCC-----CCCCTT
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhh-----cccCCh
Confidence            45778888999999999888 56777888889999999999887543322  36899999999988653     246899


Q ss_pred             ccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005          476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  539 (779)
Q Consensus       476 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  539 (779)
                      |++|++++|+++ .+|. ...+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999999998 5565 4578999999999999998888889999999999999999986554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.2e-44  Score=398.59  Aligned_cols=463  Identities=19%  Similarity=0.157  Sum_probs=296.9

Q ss_pred             cEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEE
Q 004005           56 KYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  135 (779)
Q Consensus        56 ~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L  135 (779)
                      ++||+++|++     ..+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|++.+..|. .++++++|++|
T Consensus         3 ~~l~ls~n~l-----~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGL-----IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCC-----SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEE
T ss_pred             ceEecCCCCc-----cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEE
Confidence            5788888888     35665554  7888888888888877777888888888888888888743344 68888888888


Q ss_pred             EccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEcc
Q 004005          136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS  215 (779)
Q Consensus       136 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  215 (779)
                      ++++|.++. ++.                                                     .  .+++|++|+++
T Consensus        75 ~Ls~N~l~~-lp~-----------------------------------------------------~--~l~~L~~L~L~   98 (520)
T 2z7x_B           75 DLSHNKLVK-ISC-----------------------------------------------------H--PTVNLKHLDLS   98 (520)
T ss_dssp             ECCSSCCCE-EEC-----------------------------------------------------C--CCCCCSEEECC
T ss_pred             ecCCCceee-cCc-----------------------------------------------------c--ccCCccEEecc
Confidence            888876652 111                                                     0  23466777777


Q ss_pred             CccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCcc--CEEEccCCcC--CCCCCccccccCCCCcEEECCC
Q 004005          216 HIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSM  290 (779)
Q Consensus       216 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~l~~  290 (779)
                      +|.+.+ .+|..+ +.+++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+...-.....+++++
T Consensus        99 ~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           99 FNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             SSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             CCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            777664 355554 688889999998888775   345555666  8888888777  5444544332111223445555


Q ss_pred             CCCCcccCc-cccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCcc
Q 004005          291 NALDGSIPS-SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE  369 (779)
Q Consensus       291 n~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  369 (779)
                      |.+.+.++. .+..+++|+.+++++|.......                  .+.+..+ .+..+++|+.|++++|.+.+.
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------YFLSILA-KLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHH
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccc------------------eeecchh-hhccccchhhccccccccCHH
Confidence            554443332 34455555555555554100000                  0111111 233444444444444443321


Q ss_pred             CCccc---cCCCCCCEEEccCCCCCCCcCccc-----cCCCCCcEEEccCCcccCCcC-cccCCC---CCCcEEEccCCc
Q 004005          370 IPQSL---SKCSSLEGLYLNNNSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGPIP-VEFCQL---DSLQILDISDNN  437 (779)
Q Consensus       370 ~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~  437 (779)
                      .+..+   ...++|++|++++|.+.+.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence            11100   012344444444444443444433     4444555555555444  122 222211   345555555554


Q ss_pred             CccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccc--ccc
Q 004005          438 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVS  515 (779)
Q Consensus       438 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~  515 (779)
                      +..                       ..   .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++  ..|
T Consensus       314 l~~-----------------------~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  367 (520)
T 2z7x_B          314 MVH-----------------------ML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA  367 (520)
T ss_dssp             CCC-----------------------CC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred             ccc-----------------------cc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence            431                       11   02467788888888888887778888888889999999888886  445


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCCc-ccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeec
Q 004005          516 VQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ  594 (779)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (779)
                      ..+..+++|++|++++|.+.+.+|. .+..                                                  
T Consensus       368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------------------------------------------------  397 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------------------------------------------------  397 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------------------------------------------
T ss_pred             HHHhhCCCCCEEECCCCcCCcccccchhcc--------------------------------------------------
Confidence            6688889999999999988764443 2332                                                  


Q ss_pred             cccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCc
Q 004005          595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE  674 (779)
Q Consensus       595 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  674 (779)
                         +++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+
T Consensus       398 ---l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          398 ---TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ  471 (520)
T ss_dssp             ---CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ---CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence               23789999999999877777665  79999999999999 6777777999999999999999954444588999999


Q ss_pred             EEeccCCcCcccCCC
Q 004005          675 VFSVAYNNLSGEIPE  689 (779)
Q Consensus       675 ~L~l~~N~l~~~~p~  689 (779)
                      +|++++|+++|.|+.
T Consensus       472 ~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          472 KIWLHTNPWDCSCPR  486 (520)
T ss_dssp             EEECCSSCBCCCHHH
T ss_pred             EEECcCCCCcccCCc
Confidence            999999999998873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5e-42  Score=393.68  Aligned_cols=279  Identities=22%  Similarity=0.235  Sum_probs=205.8

Q ss_pred             cCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEE
Q 004005          375 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQV  454 (779)
Q Consensus       375 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  454 (779)
                      ..+.+++.+.+.++.+...  ..+....+++.|++.+|.+....+   ..++.|+.+++..|..... .....+++|+.+
T Consensus       303 ~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L  376 (635)
T 4g8a_A          303 NCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFL  376 (635)
T ss_dssp             GGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB-CCCCBCTTCCEE
T ss_pred             hhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC-cccccccccccc
Confidence            3344455555555444322  123334455555555555443222   1234455555555544322 222234555555


Q ss_pred             EccCccccc--ccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccc-cccccCCCCCCEEEccC
Q 004005          455 HLSKNMLHG--QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQLLDLSN  531 (779)
Q Consensus       455 ~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~  531 (779)
                      +++.|.+..  ..+. .+..+.+|+.+++..+.+.. .+..+..+++|+.+++.++...... ...+..+++++.+++++
T Consensus       377 ~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~  454 (635)
T 4g8a_A          377 DLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  454 (635)
T ss_dssp             ECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred             hhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            555555432  1222 25567899999999998874 4566888999999999998876544 45678899999999999


Q ss_pred             CcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcc
Q 004005          532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL  611 (779)
Q Consensus       532 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  611 (779)
                      |.+.+..+..+...+                                                     .++.|++++|++
T Consensus       455 n~l~~~~~~~~~~~~-----------------------------------------------------~L~~L~Ls~N~~  481 (635)
T 4g8a_A          455 THTRVAFNGIFNGLS-----------------------------------------------------SLEVLKMAGNSF  481 (635)
T ss_dssp             SCCEECCTTTTTTCT-----------------------------------------------------TCCEEECTTCEE
T ss_pred             cccccccccccccch-----------------------------------------------------hhhhhhhhhccc
Confidence            999877776665543                                                     799999999985


Q ss_pred             c-ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCC
Q 004005          612 I-GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  690 (779)
Q Consensus       612 ~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~  690 (779)
                      . +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++||+++|++++..|..
T Consensus       482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence            4 457788999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccc-ccCCcccccCCCCCCCCCCC
Q 004005          691 KAQF-ATFNESSYEGNTFLCGLPLP  714 (779)
Q Consensus       691 ~~~~-~~~~~~~~~~n~~~c~~~l~  714 (779)
                      +..+ .++..+.+.+|||.|+|.+.
T Consensus       562 l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          562 LQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             TTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             HHhhhCcCCEEEeeCCCCcccCCcH
Confidence            8777 67899999999999999753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.6e-44  Score=408.01  Aligned_cols=371  Identities=20%  Similarity=0.249  Sum_probs=248.6

Q ss_pred             CCcCcCCCCcCcCCCCccCEEEccCCcCCCC-----------------CCcccc-ccCCCCcEEECCCCCCCcccCcccc
Q 004005          241 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH-----------------IPVKIG-DVLPSLYVFNNSMNALDGSIPSSFG  302 (779)
Q Consensus       241 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-----------------~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~  302 (779)
                      .|.+++ +|..+..+++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            355666 566677777777777777777753                 666655 1267777777777777777777777


Q ss_pred             CCCCCCEEEccCCc-Ccc-ccchhhhh-----CCCCCCEEEccCcccCccCcc--cCCCCCCCCEEEccCCcCCccCCcc
Q 004005          303 NMKFLQILDLSNNH-LTG-EIPEHLAV-----GCVNLQFLALSNNNLQGHLFS--RNFNLTNLQWLQLEGNRFVGEIPQS  373 (779)
Q Consensus       303 ~l~~L~~L~Ls~n~-i~~-~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~  373 (779)
                      ++++|++|++++|. +++ .+|..+..     .+++|++|++++|.+. ..+.  .+..+++|++|++++|.+.+.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            77788888888777 765 56665543     1367777777777776 4444  56667777777777777765666 6


Q ss_pred             ccCCCCCCEEEccCCCCCCCcCccccCCCC-CcEEEccCCcccCCcCcccCCCC--CCcEEEccCCcCccCCCCccCccc
Q 004005          374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTR-LQYIIMPNNHLEGPIPVEFCQLD--SLQILDISDNNISGSLPSCFHPLS  450 (779)
Q Consensus       374 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~  450 (779)
                      +..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|.+.+..|..+..  
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--  424 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--  424 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT--
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc--
Confidence            666667777777777666 55555666666 777777776666 4555554433  6666666666666544432210  


Q ss_pred             ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCC-------CC
Q 004005          451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL-------NQ  523 (779)
Q Consensus       451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~  523 (779)
                                    .... ...+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+...       ++
T Consensus       425 --------------~~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          425 --------------LDPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             --------------TCSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred             --------------cccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence                          0000 1145677777777777775444455667777777777777774333333322       27


Q ss_pred             CCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005          524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG  603 (779)
Q Consensus       524 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  603 (779)
                      |+.|++++|+++ .+|..+..                                                   ..+++|+.
T Consensus       490 L~~L~Ls~N~l~-~lp~~~~~---------------------------------------------------~~l~~L~~  517 (636)
T 4eco_A          490 LTSIDLRFNKLT-KLSDDFRA---------------------------------------------------TTLPYLVG  517 (636)
T ss_dssp             CCEEECCSSCCC-BCCGGGST---------------------------------------------------TTCTTCCE
T ss_pred             ccEEECcCCcCC-ccChhhhh---------------------------------------------------ccCCCcCE
Confidence            888888888776 34443320                                                   01236888


Q ss_pred             EEccCCcccccCcccccCCCCCCEEEC------cccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005          604 LDLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  677 (779)
Q Consensus       604 L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  677 (779)
                      |++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.||
T Consensus       518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~  593 (636)
T 4eco_A          518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD  593 (636)
T ss_dssp             EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred             EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence            8888888876 7777778888888888      56778888899999999999999999999 46777655  7899999


Q ss_pred             ccCCcCcccCCC
Q 004005          678 VAYNNLSGEIPE  689 (779)
Q Consensus       678 l~~N~l~~~~p~  689 (779)
                      +++|++++....
T Consensus       594 Ls~N~l~~~~~~  605 (636)
T 4eco_A          594 IKDNPNISIDLS  605 (636)
T ss_dssp             CCSCTTCEEECT
T ss_pred             CcCCCCccccHH
Confidence            999988865443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.2e-44  Score=404.33  Aligned_cols=444  Identities=18%  Similarity=0.210  Sum_probs=349.2

Q ss_pred             CccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCc------C------CCCcCcCCCCccCEEEccCCcCCCCCCcc
Q 004005          208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA------G------PFRLPIHSHKRLRQLDVSNNNIRGHIPVK  275 (779)
Q Consensus       208 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  275 (779)
                      +++.|+++++.+.|.+|..+ +++++|++|++++|.+.      +      ..+..  .+..|+ ++++++.+.+.++..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~--~~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDE--QKQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH--HHHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHH--HHHHHH-hhHHHhhhccCchhh
Confidence            56777777777777777664 57777777777777541      1      01111  123344 555555554444443


Q ss_pred             ccccCC------------------CCcEEECC--CCCCCcccCccccCCCCCCEEEccCCcCccc---------------
Q 004005          276 IGDVLP------------------SLYVFNNS--MNALDGSIPSSFGNMKFLQILDLSNNHLTGE---------------  320 (779)
Q Consensus       276 ~~~~l~------------------~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~---------------  320 (779)
                      +...+.                  .++.+.+.  .|.+++ +|..++++++|++|++++|.+.+.               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence            332111                  12222222  567777 899999999999999999999864               


Q ss_pred             --cchhhh-hCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCc-CCc-cCCccccCC------CCCCEEEccCCC
Q 004005          321 --IPEHLA-VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR-FVG-EIPQSLSKC------SSLEGLYLNNNS  389 (779)
Q Consensus       321 --~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~  389 (779)
                        +|..+. ..+++|++|++++|.+.+..+..+.++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence              777654 258999999999999998889999999999999999998 887 677777665      899999999999


Q ss_pred             CCCCcCc--cccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCccc-ccEEEccCcccccccC
Q 004005          390 LLGKIPR--WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLK  466 (779)
Q Consensus       390 ~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~  466 (779)
                      +. .+|.  .+..+++|++|++++|.+.+.+| .+..+++|++|++++|++.........+++ |+.|++++|.+. .+|
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence            98 7777  89999999999999999997788 888999999999999999855445455777 999999999987 677


Q ss_pred             cccccCCC--CccEEeccCccCCCccCcccc-------CCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC
Q 004005          467 RGTFFNCS--SLVTLDLSYNRLNGSIPDWVD-------GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP  537 (779)
Q Consensus       467 ~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  537 (779)
                      .. +..++  +|+.|++++|.+.+..|..+.       .+++|+.|++++|++++..+..+..+++|+.|++++|.++..
T Consensus       394 ~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          394 NI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             SC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             hh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence            64 55544  899999999999998888888       788999999999999966566677899999999999999843


Q ss_pred             CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcc
Q 004005          538 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP  617 (779)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  617 (779)
                      .+..+....                                              .....+++|++|++++|+++ .+|.
T Consensus       473 ~~~~~~~~~----------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~  505 (636)
T 4eco_A          473 PKNSLKDEN----------------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSD  505 (636)
T ss_dssp             CSSSSEETT----------------------------------------------EECTTGGGCCEEECCSSCCC-BCCG
T ss_pred             CHHHhcccc----------------------------------------------ccccccCCccEEECcCCcCC-ccCh
Confidence            333332211                                              00012347999999999999 6888


Q ss_pred             ccc--CCCCCCEEECcccccccCCCCCCCCCCCCCEEEC------CCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          618 QIG--NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       618 ~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      .+.  .+++|++|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|.
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence            886  99999999999999997 8889999999999999      56888899999999999999999999999 57787


Q ss_pred             CccccccCCcccccCCCCCCCC
Q 004005          690 WKAQFATFNESSYEGNTFLCGL  711 (779)
Q Consensus       690 ~~~~~~~~~~~~~~~n~~~c~~  711 (779)
                      .+.  .++..+.+.+|++.|-.
T Consensus       584 ~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          584 KIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCC--TTCCEEECCSCTTCEEE
T ss_pred             hHh--CcCCEEECcCCCCcccc
Confidence            544  78899999999988754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.2e-42  Score=394.90  Aligned_cols=441  Identities=20%  Similarity=0.237  Sum_probs=338.2

Q ss_pred             CCccEEEccCccCcccCChhhhhcCCCCcEEEc-CCCcCcCCCCcCc---------------------------------
Q 004005          207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL-VNDSLAGPFRLPI---------------------------------  252 (779)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~---------------------------------  252 (779)
                      .+++.|+|+++.+.|.+|..+ +++++|++|+| ++|.+.|..+...                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            468888888888888888775 68888888888 7776554321110                                 


Q ss_pred             ------------------CCCCccCEEEccC--CcCCCCCCccccccCCCCcEEECCCCCCCc-----------------
Q 004005          253 ------------------HSHKRLRQLDVSN--NNIRGHIPVKIGDVLPSLYVFNNSMNALDG-----------------  295 (779)
Q Consensus       253 ------------------~~~~~L~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------  295 (779)
                                        .....++.+.+..  |.+++ +|..+.. +++|++|++++|.+++                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                              1111222333332  56664 7776655 7889999999998887                 


Q ss_pred             ccCcccc--CCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcc-cCc-cCcccC-------CCCCCCCEEEccCC
Q 004005          296 SIPSSFG--NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN-LQG-HLFSRN-------FNLTNLQWLQLEGN  364 (779)
Q Consensus       296 ~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~-------~~l~~L~~L~L~~n  364 (779)
                      .+|..++  ++++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +.+ ..|..+       ..+++|++|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            3788877  899999999999988878886554 58999999999997 776 455433       34569999999999


Q ss_pred             cCCccCCc--cccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCC-CcEEEccCCcCccC
Q 004005          365 RFVGEIPQ--SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS-LQILDISDNNISGS  441 (779)
Q Consensus       365 ~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~  441 (779)
                      .+. .+|.  .+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|++. .
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            998 6777  8889999999999999988 666 7888999999999999988 77778888888 999999999988 4


Q ss_pred             CCCccC-c--ccccEEEccCcccccccCccc--cc--CCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccc
Q 004005          442 LPSCFH-P--LSIKQVHLSKNMLHGQLKRGT--FF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV  514 (779)
Q Consensus       442 ~~~~~~-~--~~L~~L~l~~n~~~~~~~~~~--~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  514 (779)
                      +|..+. .  ++|+.|++++|.+.+.++...  +.  .+++|+.|++++|.++...+..+..+++|+.|++++|+++...
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip  713 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP  713 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence            555544 2  348999999999877655321  12  4468999999999999544444568999999999999998443


Q ss_pred             cccccC-------CCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeec
Q 004005          515 SVQLCE-------LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK  587 (779)
Q Consensus       515 ~~~l~~-------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (779)
                      ...+..       +++|+.|++++|+++ .+|..+..                                           
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------------------------------------  749 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------------------------------------  749 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------------------------------------------
T ss_pred             hHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------------------------------------------
Confidence            333332       238999999999998 45554430                                           


Q ss_pred             cceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc------cccccCCCCCCCCCCCCCEEECCCCcCCC
Q 004005          588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGSIPSTFSNLKHVESLDLSNNKLNG  661 (779)
Q Consensus       588 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  661 (779)
                              ..+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|..+++|++|+|++|++ +
T Consensus       750 --------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~  819 (876)
T 4ecn_A          750 --------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R  819 (876)
T ss_dssp             --------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred             --------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence                    013479999999999996 788899999999999976      788889999999999999999999999 5


Q ss_pred             CCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCC--CCC
Q 004005          662 KIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC--GLP  712 (779)
Q Consensus       662 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c--~~~  712 (779)
                      .+|..+.  ++|+.||+++|++....+..+..........+.+|++.+  +|+
T Consensus       820 ~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          820 KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            7887765  699999999999987777666665555666677776655  554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-41  Score=391.38  Aligned_cols=350  Identities=20%  Similarity=0.236  Sum_probs=222.0

Q ss_pred             CCcCcC--CCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCC-CCc-ccCccccCC-------CCCCEEEccCCc
Q 004005          248 FRLPIH--SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA-LDG-SIPSSFGNM-------KFLQILDLSNNH  316 (779)
Q Consensus       248 ~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l-------~~L~~L~Ls~n~  316 (779)
                      +|..+.  .+++|++|++++|.+.+.+|..+.. +++|+.|++++|+ +++ .+|..+..+       ++|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            555555  6677777777777666666655544 6677777777776 665 566544433       477777777777


Q ss_pred             Cccccch-hhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCC-CCEEEccCCCCCCCc
Q 004005          317 LTGEIPE-HLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS-LEGLYLNNNSLLGKI  394 (779)
Q Consensus       317 i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~  394 (779)
                      +. .+|. ..+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            77 6766 23345777777777777777 344 6777777888888887777 66666777777 888888888777 55


Q ss_pred             CccccCCCC--CcEEEccCCcccCCcCcc---cC--CCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCc
Q 004005          395 PRWLGNLTR--LQYIIMPNNHLEGPIPVE---FC--QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR  467 (779)
Q Consensus       395 ~~~~~~l~~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  467 (779)
                      |..+..++.  |+.|++++|++.+.+|..   +.  .+++|+.|++++|++.......                      
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~----------------------  692 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL----------------------  692 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH----------------------
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH----------------------
Confidence            666665543  788888888777654422   11  3346777777777666322222                      


Q ss_pred             ccccCCCCccEEeccCccCCCccCccccC-------CCCCCEEEccCCccccccccccc--CCCCCCEEEccCCcCCCCC
Q 004005          468 GTFFNCSSLVTLDLSYNRLNGSIPDWVDG-------LSQLSHLILGHNNLEGEVSVQLC--ELNQLQLLDLSNNNLHGPI  538 (779)
Q Consensus       468 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~  538 (779)
                        +..+++|+.|++++|.+....+..+..       +++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +
T Consensus       693 --~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l  768 (876)
T 4ecn_A          693 --FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F  768 (876)
T ss_dssp             --HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred             --HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence              233444444444444444211111111       124555555555554 3333333  45555555555555544 2


Q ss_pred             CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEcc------CCccc
Q 004005          539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS------CNKLI  612 (779)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls------~n~l~  612 (779)
                      |..+..+                                                     ++|+.|+|+      +|++.
T Consensus       769 p~~l~~L-----------------------------------------------------~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          769 PTQPLNS-----------------------------------------------------SQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             CCGGGGC-----------------------------------------------------TTCCEEECCCCBCTTCCBCC
T ss_pred             chhhhcC-----------------------------------------------------CCCCEEECCCCCCccccccc
Confidence            3333222                                                     145555554      47888


Q ss_pred             ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005          613 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  685 (779)
Q Consensus       613 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  685 (779)
                      +.+|..+..+++|++|+|++|++. .+|..+.  ++|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             ccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            889999999999999999999994 7777665  699999999999987777777666666777788887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-42  Score=382.31  Aligned_cols=440  Identities=18%  Similarity=0.155  Sum_probs=269.4

Q ss_pred             CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005           19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP   98 (779)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~   98 (779)
                      ++|++|++++|.         +.+..+..+. .+++|++|++++|++    .+..|++|+++++|++|+|++|+++ .+|
T Consensus        21 ~~L~~L~Ls~n~---------i~~~~~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp   85 (520)
T 2z7x_B           21 QKTTILNISQNY---------ISELWTSDIL-SLSKLRILIISHNRI----QYLDISVFKFNQELEYLDLSHNKLV-KIS   85 (520)
T ss_dssp             TTCSEEECCSSC---------CCCCCHHHHT-TCTTCCEEECCSSCC----CEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred             ccccEEECCCCc---------ccccChhhcc-ccccccEEecCCCcc----CCcChHHhhcccCCCEEecCCCcee-ecC
Confidence            455555555555         4433334444 555555555555555    2333445555555555555555554 333


Q ss_pred             hhhcCCCCCCEEEcCCCcccC-CCCcccccCCCCCCEEEccCccccCcCCcccccCCCCC--cEEEccCCccceeecccc
Q 004005           99 WCMANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL--KIFNAENNEIKAEITESH  175 (779)
Q Consensus        99 ~~~~~l~~L~~L~L~~n~l~~-~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~~~l~~~~~~~~  175 (779)
                      ..  .+++|++|++++|++.+ .+|. .++++++|++|++++|.+++    ..+..+++|  ++|++++|.+.+      
T Consensus        86 ~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~------  152 (520)
T 2z7x_B           86 CH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG------  152 (520)
T ss_dssp             CC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT------
T ss_pred             cc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc------
Confidence            33  45555555555555543 2333 45555555555555555443    133444444  555555544410      


Q ss_pred             cccCCcccccEEecCCCCCCCCCCchhhcCCC-CccEEEccCccCcccCChhhhhcCCCCcEEEcCCCc-------CcCC
Q 004005          176 SLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQH-DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS-------LAGP  247 (779)
Q Consensus       176 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~  247 (779)
                                          .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.       +.+.
T Consensus       153 --------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  212 (520)
T 2z7x_B          153 --------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI  212 (520)
T ss_dssp             --------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred             --------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc
Confidence                                233333333333 233455566665555555555566666666666665       3333


Q ss_pred             CCcCcCCCCccCEEEccCCcCCCCCCccccc--cCCCCcEEECCCCCCCcccCccc-----cCCCCCCEEEccCCcCccc
Q 004005          248 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGE  320 (779)
Q Consensus       248 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~  320 (779)
                      ++ .+..+++|++|++++|.+.+..+..+..  ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .
T Consensus       213 ~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~  289 (520)
T 2z7x_B          213 LA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G  289 (520)
T ss_dssp             HH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred             hh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence            33 5566677777777776655322221111  13477788888877777777776     7888888888888887  5


Q ss_pred             cc-hhhhh--CCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCC--CcC
Q 004005          321 IP-EHLAV--GCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG--KIP  395 (779)
Q Consensus       321 ~~-~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~  395 (779)
                      +| ..+..  ...+|+.|++++|.+....  .+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+  ..|
T Consensus       290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  367 (520)
T 2z7x_B          290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA  367 (520)
T ss_dssp             SCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred             cchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence            55 22222  1256888888888776432  12567788888888888887677777788888888888887775  344


Q ss_pred             ccccCCCCCcEEEccCCcccCCcCc-ccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCC
Q 004005          396 RWLGNLTRLQYIIMPNNHLEGPIPV-EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS  474 (779)
Q Consensus       396 ~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  474 (779)
                      ..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++                       ..+.. +.  +
T Consensus       368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~-l~--~  421 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-----------------------TIFRC-LP--P  421 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-----------------------GGGGS-CC--T
T ss_pred             HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-----------------------chhhh-hc--c
Confidence            5677777788888887777763443 36667777777777776653                       22222 21  6


Q ss_pred             CccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCC
Q 004005          475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI  538 (779)
Q Consensus       475 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  538 (779)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            7888888888888 56766668888999999999888544445888889999999999887653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.8e-41  Score=378.42  Aligned_cols=465  Identities=19%  Similarity=0.145  Sum_probs=291.0

Q ss_pred             CCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCC
Q 004005           52 MPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS  131 (779)
Q Consensus        52 l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~  131 (779)
                      +...+++++++++++     .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++.+..|. .+.++++
T Consensus        30 ~~~~~~l~ls~~~L~-----~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNLT-----HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCCC-----SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTT
T ss_pred             cCCCcEEEcCCCCCc-----cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCC
Confidence            344578888888773     3554443  6788888888887766667788888888888888877733343 6777777


Q ss_pred             CCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccE
Q 004005          132 IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEY  211 (779)
Q Consensus       132 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  211 (779)
                      |++|++++|.++. ++.                                                     .  .+++|++
T Consensus       102 L~~L~Ls~N~l~~-lp~-----------------------------------------------------~--~l~~L~~  125 (562)
T 3a79_B          102 LEYLDVSHNRLQN-ISC-----------------------------------------------------C--PMASLRH  125 (562)
T ss_dssp             CCEEECTTSCCCE-ECS-----------------------------------------------------C--CCTTCSE
T ss_pred             CCEEECCCCcCCc-cCc-----------------------------------------------------c--ccccCCE
Confidence            7777777776552 221                                                     0  2346666


Q ss_pred             EEccCccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCcc--CEEEccCCcC--CCCCCccccccCCCCcEE
Q 004005          212 VDLSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVF  286 (779)
Q Consensus       212 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~i--~~~~~~~~~~~l~~L~~L  286 (779)
                      |++++|.+.+ ..|..+ +++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+...-...-.+
T Consensus       126 L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l  201 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL  201 (562)
T ss_dssp             EECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred             EECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence            7777776664 233443 7889999999999988753   34444444  8888888887  655555443311112244


Q ss_pred             ECCCCCCCcccCc-cccCCCCCCEEEccCCcCcc-ccch--hhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEcc
Q 004005          287 NNSMNALDGSIPS-SFGNMKFLQILDLSNNHLTG-EIPE--HLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE  362 (779)
Q Consensus       287 ~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~-~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  362 (779)
                      +++.|.+.+.++. .+..+++|+.+++++|.... .++.  ..+.++++|+.++++++.+.+.....             
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~-------------  268 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK-------------  268 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH-------------
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH-------------
Confidence            5566665543333 34456666666666653110 0000  11223455555555444433211000             


Q ss_pred             CCcCCccCCccccCCCCCCEEEccCCCCCCCcCccc-----cCCCCCcEEEccCCcccCCcC-cccC---CCCCCcEEEc
Q 004005          363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGPIP-VEFC---QLDSLQILDI  433 (779)
Q Consensus       363 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l  433 (779)
                            . +.. ...++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+|+.|++
T Consensus       269 ------~-~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          269 ------L-FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             ------H-HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             ------H-HHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence                  0 000 111244444444444443333332     2333333333333333  111 1111   1134555555


Q ss_pred             cCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccc
Q 004005          434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  513 (779)
Q Consensus       434 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  513 (779)
                      ++|.+..                       ..   ....+++|++|++++|.+++..|..+.++++|+.|++++|++++.
T Consensus       339 ~~n~~~~-----------------------~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  392 (562)
T 3a79_B          339 SDTPFIH-----------------------MV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF  392 (562)
T ss_dssp             ESSCCCC-----------------------CC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred             cCCCccc-----------------------cc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence            5554431                       11   125678889999999999887888888899999999999998863


Q ss_pred             --ccccccCCCCCCEEEccCCcCCCCCCc-ccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccce
Q 004005          514 --VSVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA  590 (779)
Q Consensus       514 --~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (779)
                        .+..+..+++|+.|++++|.+++.+|. .+..                                              
T Consensus       393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----------------------------------------------  426 (562)
T 3a79_B          393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----------------------------------------------  426 (562)
T ss_dssp             THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC----------------------------------------------
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCccChhhhcC----------------------------------------------
Confidence              345688899999999999998874443 3433                                              


Q ss_pred             eeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCC
Q 004005          591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  670 (779)
Q Consensus       591 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  670 (779)
                             +++|++|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|+++...+..+..+
T Consensus       427 -------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  496 (562)
T 3a79_B          427 -------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL  496 (562)
T ss_dssp             -------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred             -------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence                   23799999999999877666654  79999999999999 566666699999999999999995444448999


Q ss_pred             CCCcEEeccCCcCcccCCC
Q 004005          671 KTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       671 ~~L~~L~l~~N~l~~~~p~  689 (779)
                      ++|+.|++++|+++|.||.
T Consensus       497 ~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTCCCEECCSCCBCCCHHH
T ss_pred             CCCCEEEecCCCcCCCcch
Confidence            9999999999999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.5e-39  Score=352.60  Aligned_cols=371  Identities=21%  Similarity=0.219  Sum_probs=292.0

Q ss_pred             EEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC
Q 004005          260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN  339 (779)
Q Consensus       260 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~  339 (779)
                      .++.++++++ .+|. +   .+++++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4566666665 5554 2   257778888888777777777888888888888888776666666666788888888888


Q ss_pred             cccCccCcccCCCCCCCCEEEccCCcCCccCCc--cccCCCCCCEEEccCCCCCCCcCcc-ccCCCCCcEEEccCCcccC
Q 004005          340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ--SLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEG  416 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~  416 (779)
                      |.+.+..+..+.++++|++|++++|.+.+..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            888777777788888888888888887764333  3777888888888888887766654 6778888888888888877


Q ss_pred             CcCcccCCC--CCCcEEEccCCcCccCCCCc---------cCcccccEEEccCcccccccCcccccC---CCCccEEecc
Q 004005          417 PIPVEFCQL--DSLQILDISDNNISGSLPSC---------FHPLSIKQVHLSKNMLHGQLKRGTFFN---CSSLVTLDLS  482 (779)
Q Consensus       417 ~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~  482 (779)
                      ..+..+..+  .+|+.|++++|.+.+..+..         +..++|+.|++++|.+.+..+.. +..   .++|+.|+++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeec
Confidence            777666554  67788888888877654432         23467888888888876665554 322   3788888888


Q ss_pred             CccCCCc----------cCccccC--CCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005          483 YNRLNGS----------IPDWVDG--LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  550 (779)
Q Consensus       483 ~n~i~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  550 (779)
                      +|...+.          .+..+.+  .++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..|..++    
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----  323 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT----  323 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----
Confidence            8755432          1222322  36899999999999988898999999999999999999887777776544    


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEEC
Q 004005          551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  630 (779)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  630 (779)
                                                                       +|++|++++|.+++..|..+..+++|++|+|
T Consensus       324 -------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          324 -------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             -------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             -------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence                                                             7999999999999888999999999999999


Q ss_pred             cccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          631 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       631 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      ++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|+++|.||.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999988899999999999999999999987777889999999999999999999995

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.9e-39  Score=359.49  Aligned_cols=464  Identities=19%  Similarity=0.141  Sum_probs=304.9

Q ss_pred             CCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCC
Q 004005           17 HFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS   96 (779)
Q Consensus        17 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~   96 (779)
                      .+...++++++++.         +.. +|..+.   ++|++|++++|.+    .+..|.++.++++|++|+|++|++++.
T Consensus        29 ~~~~~~~l~ls~~~---------L~~-ip~~~~---~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~   91 (562)
T 3a79_B           29 SNELESMVDYSNRN---------LTH-VPKDLP---PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSL   91 (562)
T ss_dssp             ----CCEEECTTSC---------CCS-CCTTSC---TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEE
T ss_pred             ccCCCcEEEcCCCC---------Ccc-CCCCCC---CCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcC
Confidence            45556899999998         553 554333   6999999999999    344456889999999999999999988


Q ss_pred             cchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccc
Q 004005           97 LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHS  176 (779)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~  176 (779)
                      .|.+|.++++|++|++++|++. .+|. .  .+++|++|++++|.+++......++++++|++|++++|.+....   +.
T Consensus        92 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~  164 (562)
T 3a79_B           92 DFHVFLFNQDLEYLDVSHNRLQ-NISC-C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LL  164 (562)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC-EECS-C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TG
T ss_pred             CHHHhCCCCCCCEEECCCCcCC-ccCc-c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hh
Confidence            8899999999999999999998 7887 3  89999999999999875322357899999999999999887521   11


Q ss_pred             ccCCcccccEEecCCCCCC--CCCCchhhcCCC-CccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCc----CCCC
Q 004005          177 LIAPKFQLNTLSLSSNYGD--GFIFPKFLYHQH-DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA----GPFR  249 (779)
Q Consensus       177 ~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~  249 (779)
                      .+... +|+.|++ +.+.+  ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|...    ....
T Consensus       165 ~l~~L-~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~  242 (562)
T 3a79_B          165 PVAHL-HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL  242 (562)
T ss_dssp             GGTTS-CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred             hhhhc-eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence            11111 3488888 44444  555666665544 12245677777766666655566777777777776411    0011


Q ss_pred             cCcCCCCccCEEEccCCcCCCCC----CccccccCCCCcEEECCCCCCCcccCccc-----cCCCCCCEEEccCCcCccc
Q 004005          250 LPIHSHKRLRQLDVSNNNIRGHI----PVKIGDVLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGE  320 (779)
Q Consensus       250 ~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~  320 (779)
                      ..+..+++|++++++++.+.+..    +....  .++|++|++++|.+++.+|..+     ..++.|+.++++.+.+  .
T Consensus       243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~  318 (562)
T 3a79_B          243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L  318 (562)
T ss_dssp             HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred             HHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence            23455567777777666554221    11111  2377777777777776666665     5555555555555555  3


Q ss_pred             cchhhhhC---CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCc--C
Q 004005          321 IPEHLAVG---CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI--P  395 (779)
Q Consensus       321 ~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~  395 (779)
                      +|......   ..+|++|++++|.+....  ....+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..  |
T Consensus       319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  396 (562)
T 3a79_B          319 FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA  396 (562)
T ss_dssp             SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred             cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence            44222111   245777777777664322  1145666777777777776666666666677777777776666422  3


Q ss_pred             ccccCCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCC
Q 004005          396 RWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS  474 (779)
Q Consensus       396 ~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  474 (779)
                      ..+..+++|++|++++|.+++.+| ..+..+++|++|++++|+++                       +..+.. +.  +
T Consensus       397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~-l~--~  450 (562)
T 3a79_B          397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-----------------------GSVFRC-LP--P  450 (562)
T ss_dssp             HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-----------------------GGGGSS-CC--T
T ss_pred             hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-----------------------cchhhh-hc--C
Confidence            445666666666666666665233 33555666666666666554                       333222 21  5


Q ss_pred             CccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005          475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  539 (779)
Q Consensus       475 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  539 (779)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            7888888888888 455555588888888888888885444448888888888998888876543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-37  Score=341.70  Aligned_cols=383  Identities=20%  Similarity=0.195  Sum_probs=298.4

Q ss_pred             cEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECC
Q 004005          210 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS  289 (779)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~  289 (779)
                      +.++.++++++ .+|.    -.++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34555555555 4554    126788888888888777777788888888888888887666666555567888888888


Q ss_pred             CCCCCcccCccccCCCCCCEEEccCCcCccccch-hhhhCCCCCCEEEccCcccCccCccc-CCCCCCCCEEEccCCcCC
Q 004005          290 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQFLALSNNNLQGHLFSR-NFNLTNLQWLQLEGNRFV  367 (779)
Q Consensus       290 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~  367 (779)
                      +|.+++..|..|.++++|++|++++|.+.+.++. ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            8888877788888888888888888888754443 23456888888888888888776655 678888888888888888


Q ss_pred             ccCCccccCC--CCCCEEEccCCCCCCCcCcc--------ccCCCCCcEEEccCCcccCCcCcccCC---CCCCcEEEcc
Q 004005          368 GEIPQSLSKC--SSLEGLYLNNNSLLGKIPRW--------LGNLTRLQYIIMPNNHLEGPIPVEFCQ---LDSLQILDIS  434 (779)
Q Consensus       368 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~l~  434 (779)
                      +..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++.+..+..+..   .++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            7777766655  67888888888887654433        235678888888888887766655543   3788888888


Q ss_pred             CCcCccCCCCccCcccccEEEccCcccccccCccccc--CCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccc
Q 004005          435 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG  512 (779)
Q Consensus       435 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  512 (779)
                      +|...+.......             +.. .....+.  ..++|+.|++++|.+.+..|..+..+++|+.|++++|++++
T Consensus       248 ~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          248 NSYNMGSSFGHTN-------------FKD-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             TCTTTSCCTTCCS-------------SCC-CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             cccccccccchhh-------------hcc-CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence            8866543221111             111 1111122  23789999999999998889999999999999999999998


Q ss_pred             cccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceee
Q 004005          513 EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI  592 (779)
Q Consensus       513 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (779)
                      ..+..+..+++|++|++++|.+++..|..|..++                                              
T Consensus       314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------------------------  347 (455)
T 3v47_A          314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD----------------------------------------------  347 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT----------------------------------------------
T ss_pred             cChhHhcCcccCCEEECCCCccCCcChhHhcCcc----------------------------------------------
Confidence            8888999999999999999999877676665543                                              


Q ss_pred             eccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCc
Q 004005          593 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  664 (779)
Q Consensus       593 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  664 (779)
                             +|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|
T Consensus       348 -------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          348 -------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             -------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence                   79999999999998889999999999999999999998888889999999999999999998776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.8e-37  Score=333.40  Aligned_cols=220  Identities=32%  Similarity=0.395  Sum_probs=121.4

Q ss_pred             CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEE
Q 004005          256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL  335 (779)
Q Consensus       256 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L  335 (779)
                      ++|++|++++|.++ .++..    .++|++|++++|.+++ +| .++.+++|++|++++|.+. .+|..    .++|++|
T Consensus       111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            45555555555554 22211    1466666666666664 45 4677777777777777766 34432    3467777


Q ss_pred             EccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCccc
Q 004005          336 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE  415 (779)
Q Consensus       336 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  415 (779)
                      ++++|.+.+. + .+..+++|++|++++|.+.+ .|..   .++|++|++++|.+. .+| .+..+++|++|++++|+++
T Consensus       179 ~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          179 AAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            7777766653 2 46666777777777776664 2221   136666666666665 344 2566666666666666665


Q ss_pred             CCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcccc
Q 004005          416 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD  495 (779)
Q Consensus       416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  495 (779)
                      + +|.   .+++|+.|++++|++.+.                        +..    .++|++|++++|.+++. |..  
T Consensus       251 ~-l~~---~~~~L~~L~l~~N~l~~l------------------------~~~----~~~L~~L~ls~N~l~~l-~~~--  295 (454)
T 1jl5_A          251 T-LPD---LPPSLEALNVRDNYLTDL------------------------PEL----PQSLTFLDVSENIFSGL-SEL--  295 (454)
T ss_dssp             S-CCS---CCTTCCEEECCSSCCSCC------------------------CCC----CTTCCEEECCSSCCSEE-SCC--
T ss_pred             c-ccc---cccccCEEECCCCccccc------------------------Ccc----cCcCCEEECcCCccCcc-cCc--
Confidence            3 222   235566666666655532                        111    24555555555555531 111  


Q ss_pred             CCCCCCEEEccCCcccccccccccCC-CCCCEEEccCCcCCC
Q 004005          496 GLSQLSHLILGHNNLEGEVSVQLCEL-NQLQLLDLSNNNLHG  536 (779)
Q Consensus       496 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~  536 (779)
                       .++|+.|++++|++++. +    .+ ++|+.|++++|++++
T Consensus       296 -~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          296 -PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             -CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC
T ss_pred             -CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc
Confidence             14566666666665531 1    12 356666666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8e-36  Score=328.46  Aligned_cols=345  Identities=19%  Similarity=0.163  Sum_probs=245.4

Q ss_pred             cEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccC
Q 004005          284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG  363 (779)
Q Consensus       284 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  363 (779)
                      +.++++++.++ .+|..+.  ++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45566665555 3444332  46666666666666 33333344566666666666666665566666666666666666


Q ss_pred             CcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCC
Q 004005          364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP  443 (779)
Q Consensus       364 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  443 (779)
                      |.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++   
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---  166 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---  166 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence            66665544556666666666666666665555566666666666666666665555556666666666666665542   


Q ss_pred             CccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCC
Q 004005          444 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ  523 (779)
Q Consensus       444 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  523 (779)
                                           ++...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+
T Consensus       167 ---------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          167 ---------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             ---------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             ---------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                 33334778889999999999988877778888999999999998877766666666678


Q ss_pred             CCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005          524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG  603 (779)
Q Consensus       524 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  603 (779)
                      |+.|++++|.+++..+..+..+                                                     ++|++
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCE
T ss_pred             ccEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCe
Confidence            9999999998875444444443                                                     37999


Q ss_pred             EEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcC
Q 004005          604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  683 (779)
Q Consensus       604 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  683 (779)
                      |++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99999999988888899999999999999999988899999999999999999999988888889999999999999999


Q ss_pred             cccCCCCcccc-ccCCcccccCCCCCCCC
Q 004005          684 SGEIPEWKAQF-ATFNESSYEGNTFLCGL  711 (779)
Q Consensus       684 ~~~~p~~~~~~-~~~~~~~~~~n~~~c~~  711 (779)
                      +|.|+.  .++ .......+.++...|..
T Consensus       333 ~c~c~~--~~~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          333 ACDCRL--LWVFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             ECSGGG--HHHHTTTTSSCCTTCCCBEEE
T ss_pred             cCccch--HhHHhhhhccccCccCceeCC
Confidence            988764  222 22233445566555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-35  Score=319.39  Aligned_cols=403  Identities=23%  Similarity=0.248  Sum_probs=225.6

Q ss_pred             cccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEE
Q 004005          183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLD  262 (779)
Q Consensus       183 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  262 (779)
                      .|+.|++ +++.+ +.+|..++.+++|++|++++|.+.+.+|..+ +++.+|+.+++.+|..           .++++|+
T Consensus        12 ~L~~L~l-~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           12 FLQEPLR-HSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cchhhhc-ccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEEE
Confidence            5555555 33333 4555555555666666666555555555543 3344332222222211           1346677


Q ss_pred             ccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCccc
Q 004005          263 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL  342 (779)
Q Consensus       263 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l  342 (779)
                      +++|.++ .+|..    .++|++|++++|.+++ +|..   +++|++|++++|.+. .++.    ..++|++|++++|.+
T Consensus        78 l~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           78 LNNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQL  143 (454)
T ss_dssp             CTTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCC
T ss_pred             ecCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCC
Confidence            7777665 34431    2567777777776665 4432   356777777777666 3332    125677777777777


Q ss_pred             CccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCccc
Q 004005          343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF  422 (779)
Q Consensus       343 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  422 (779)
                      .+. + .+..+++|++|++++|++.+ +|..   .++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|.. 
T Consensus       144 ~~l-p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-  213 (454)
T 1jl5_A          144 EKL-P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-  213 (454)
T ss_dssp             SSC-C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred             CCC-c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence            653 3 46677777777777777664 3332   2467777777777764 34 46677777777777777664 2221 


Q ss_pred             CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005          423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH  502 (779)
Q Consensus       423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  502 (779)
                        .++|++|++++|.+. ..+....+++|+.|++++|.+.+ ++..    .++|+.|++++|.+++ +|..   +++|+.
T Consensus       214 --~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~  281 (454)
T 1jl5_A          214 --PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTF  281 (454)
T ss_dssp             --CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred             --cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccc-cCcc---cCcCCE
Confidence              246777777777776 33444446677777777777643 3332    3789999999999885 4443   378999


Q ss_pred             EEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccccee
Q 004005          503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIF  582 (779)
Q Consensus       503 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (779)
                      |++++|++++.. .   ..++|+.|++++|++++.. .                                          
T Consensus       282 L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~-~------------------------------------------  314 (454)
T 1jl5_A          282 LDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLC-D------------------------------------------  314 (454)
T ss_dssp             EECCSSCCSEES-C---CCTTCCEEECCSSCCSEEC-C------------------------------------------
T ss_pred             EECcCCccCccc-C---cCCcCCEEECcCCcCCccc-C------------------------------------------
Confidence            999999988632 1   1268999999999876411 0                                          


Q ss_pred             eeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCC-
Q 004005          583 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-  661 (779)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  661 (779)
                                    .+++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++ 
T Consensus       315 --------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          315 --------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             --------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC
T ss_pred             --------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcC
Confidence                          12369999999999985 5554   5789999999999994 555   47899999999999998 


Q ss_pred             -CCcccccCC-------------CCCcEEeccCCcCcc--cCCCCccccccCCcccccCCCCCCC
Q 004005          662 -KIPHQLVEL-------------KTLEVFSVAYNNLSG--EIPEWKAQFATFNESSYEGNTFLCG  710 (779)
Q Consensus       662 -~~~~~~~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~~n~~~c~  710 (779)
                       .+|..+..+             ++|++||+++|++++  .+|.++      ..+.+.+|...|.
T Consensus       373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~~  431 (454)
T 1jl5_A          373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV------EDLRMNSERVVDP  431 (454)
T ss_dssp             CCCCTTCCEEECCC---------------------------------------------------
T ss_pred             CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH------hheeCcCcccCCc
Confidence             678888777             889999999999997  667643      3334455554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.5e-34  Score=312.74  Aligned_cols=347  Identities=26%  Similarity=0.359  Sum_probs=233.8

Q ss_pred             cCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCE
Q 004005          230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  309 (779)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  309 (779)
                      .+++++.|++.++.+... + .+..+++|++|++++|.++ .++.  ...+++|++|++++|.+.+..+  +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            446677777777776542 2 3556677777777777766 3333  3335666666666666664433  666666666


Q ss_pred             EEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCC
Q 004005          310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS  389 (779)
Q Consensus       310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  389 (779)
                      |++++|.+. .++.  +..+++|++|++++|.+.+..  .+..+++|++|+++ +.+.+..  .+..+++|++|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            666666665 3332  344666666666666655422  35556666666664 2333221  25556666666666665


Q ss_pred             CCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCccc
Q 004005          390 LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT  469 (779)
Q Consensus       390 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  469 (779)
                      +.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|++.                       + ++  .
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~-~~--~  238 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T  238 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------c-ch--h
Confidence            5432  234555556666665555554433  444555555555555443                       2 11  2


Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..     
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-----  307 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN-----  307 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence            6778889999999998886554  7888999999999999886544  7888999999999998875433  222     


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                      +++|+.|++++|++++..|  +..+++|++|+
T Consensus       308 ------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          308 ------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             ------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             ------------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence                                                            3479999999999986654  77889999999


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCccc
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  686 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  686 (779)
                      +++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999865  468899999999999999987776  78899999999999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-34  Score=308.23  Aligned_cols=335  Identities=22%  Similarity=0.213  Sum_probs=257.5

Q ss_pred             CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 004005          304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL  383 (779)
Q Consensus       304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (779)
                      +++++.+++++|.+. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            467778888887776 6777666667888888888888777766777778888888888888877777777788888888


Q ss_pred             EccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccc
Q 004005          384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  463 (779)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  463 (779)
                      ++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..  ...+++|+.+++++|.+.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence            88888877555555677888888888888887777777778888888888888777542  2335677888888777643


Q ss_pred             ccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 004005          464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD  543 (779)
Q Consensus       464 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  543 (779)
                            +...++|+.|++++|.+... |.  ...++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..|.
T Consensus       201 ------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          201 ------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             ------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence                  33446788999999988754 32  2347899999999998854  4678889999999999988876666665


Q ss_pred             cCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCC
Q 004005          544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  623 (779)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~  623 (779)
                      .++                                                     +|++|++++|++++ +|..+..++
T Consensus       270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred             ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence            543                                                     78999999999885 566678889


Q ss_pred             CCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCccccc
Q 004005          624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE  703 (779)
Q Consensus       624 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  703 (779)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+.|++++|+++|.+..  ..+..+....+.
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~  369 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD  369 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence            9999999999998 5566788889999999999999855 3  67788999999999999987654  455666666777


Q ss_pred             CCCCCCCCC
Q 004005          704 GNTFLCGLP  712 (779)
Q Consensus       704 ~n~~~c~~~  712 (779)
                      +++..|.++
T Consensus       370 ~~~~~c~~~  378 (390)
T 3o6n_A          370 DADQHCKID  378 (390)
T ss_dssp             CCCSCCCTT
T ss_pred             ccCceeccc
Confidence            777777653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=316.83  Aligned_cols=348  Identities=20%  Similarity=0.188  Sum_probs=238.8

Q ss_pred             EEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC
Q 004005          260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN  339 (779)
Q Consensus       260 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~  339 (779)
                      .++.+++.++ .+|..+.   +.++.|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|++++
T Consensus        15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence            4555665555 5555442   46777777777777666677777777777777777776 33333344677777777777


Q ss_pred             cccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC
Q 004005          340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP  419 (779)
Q Consensus       340 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  419 (779)
                      |.+.......|.++++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            77776666667777788888888887777777777778888888888887776667777778888888888888776666


Q ss_pred             cccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCC
Q 004005          420 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ  499 (779)
Q Consensus       420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  499 (779)
                      ..+.++++|+.|++++|.+.+..+.                        .|..+++|+.|++++|...+.++.......+
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCcccccCcc
Confidence            6677788888888887776643222                        2555666666666666655555544444456


Q ss_pred             CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005          500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH  579 (779)
Q Consensus       500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (779)
                      |+.|++++|++++..+..+..+++|+.|++++|.+++..+..|..+.                                 
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------------  272 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL---------------------------------  272 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT---------------------------------
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc---------------------------------
Confidence            77777777777655555667777777777777777655555454432                                 


Q ss_pred             ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005          580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  659 (779)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  659 (779)
                                          +|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus       273 --------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          273 --------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             --------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             --------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence                                677778888877777777788888888888888888877777778888888888888888


Q ss_pred             CCCCcccccCCCCCcEEeccCCcCcccCCCC
Q 004005          660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  690 (779)
Q Consensus       660 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~  690 (779)
                      .+..+.. .-......+++.++...|..|..
T Consensus       333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          333 ACDCRLL-WVFRRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             ECSGGGH-HHHTTTTSSCCTTCCCBEEESGG
T ss_pred             cCccchH-hHHhhhhccccCccCceeCCchH
Confidence            7543321 11122333456667777766653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-33  Score=308.39  Aligned_cols=346  Identities=26%  Similarity=0.367  Sum_probs=274.5

Q ss_pred             CCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCc
Q 004005          205 HQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY  284 (779)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  284 (779)
                      .+++++.|+++++.+. .+|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  ...+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence            3568999999999887 4665  3689999999999999987654  8999999999999999984 444  44589999


Q ss_pred             EEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCC
Q 004005          285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGN  364 (779)
Q Consensus       285 ~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  364 (779)
                      +|++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|++|+++ +.+...  ..+..+++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCC
Confidence            99999999986543  899999999999999998 5553  4579999999997 444433  33789999999999999


Q ss_pred             cCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCC
Q 004005          365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS  444 (779)
Q Consensus       365 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  444 (779)
                      .+.+.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence            98854  358899999999999999987655  77899999999999999864  457889999999999998764322 


Q ss_pred             ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCC
Q 004005          445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL  524 (779)
Q Consensus       445 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  524 (779)
                                               +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|
T Consensus       261 -------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          261 -------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             -------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             -------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence                                     4566777777787777775433  6777788888888888775443  6677888


Q ss_pred             CEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceE
Q 004005          525 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL  604 (779)
Q Consensus       525 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  604 (779)
                      +.|++++|++++..|  +..                                                     +++|++|
T Consensus       312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L  336 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL  336 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred             CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence            888888887765433  222                                                     3468888


Q ss_pred             EccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCC
Q 004005          605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG  661 (779)
Q Consensus       605 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  661 (779)
                      ++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            8888888754  467788888888888888887665  7788888888888888875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3e-34  Score=310.95  Aligned_cols=363  Identities=19%  Similarity=0.167  Sum_probs=252.3

Q ss_pred             CCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCcc
Q 004005          196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK  275 (779)
Q Consensus       196 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  275 (779)
                      ....+..++.+++|++|++++|.+++ +| . +..+++|++|++++|.+.+.   ++..+++|++|++++|.+++ ++  
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred             CcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--
Confidence            33445566778888888888888875 45 3 36888888888888888764   37778888888888888874 33  


Q ss_pred             ccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCC
Q 004005          276 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN  355 (779)
Q Consensus       276 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  355 (779)
                       ...+++|++|++++|.+++. +  ++.+++|++|++++|.+++ ++   +..+++|++|++++|...+..  .+..+++
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCc
Confidence             33467888888888888753 3  7778888888888888773 43   345778888888887443332  4667778


Q ss_pred             CCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccC
Q 004005          356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD  435 (779)
Q Consensus       356 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  435 (779)
                      |++|++++|++++. |  +..+++|+.|++++|.+.+.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++
T Consensus       172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            88888888877753 3  66777788888888877754   36677777888888777776 34  66777777777777


Q ss_pred             CcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc
Q 004005          436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS  515 (779)
Q Consensus       436 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  515 (779)
                      |++++..+  ..+++|+.|+++.|               +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|
T Consensus       243 N~l~~~~~--~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          243 NPLTELDV--STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             SCCSCCCC--TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CcCCCcCH--HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence            77765432  12344555554332               34455555555544443  3455566666666665544444


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005          516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  595 (779)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (779)
                      .   ..++|+.|++++|                                                               
T Consensus       304 ~---~~~~L~~L~l~~~---------------------------------------------------------------  317 (457)
T 3bz5_A          304 C---QAAGITELDLSQN---------------------------------------------------------------  317 (457)
T ss_dssp             C---TTCCCSCCCCTTC---------------------------------------------------------------
T ss_pred             c---CCCcceEechhhc---------------------------------------------------------------
Confidence            2   2334444444443                                                               


Q ss_pred             ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005          596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  675 (779)
Q Consensus       596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  675 (779)
                         ++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|++++|.+.+.     ..+.+|..
T Consensus       318 ---~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~  378 (457)
T 3bz5_A          318 ---PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK  378 (457)
T ss_dssp             ---TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred             ---ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence               2689999999999974   38889999999999999985        24677788999998765     34456788


Q ss_pred             EeccCCcCcccCCCC
Q 004005          676 FSVAYNNLSGEIPEW  690 (779)
Q Consensus       676 L~l~~N~l~~~~p~~  690 (779)
                      +++++|+++|.+|..
T Consensus       379 l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          379 ETLTNNSLTIAVSPD  393 (457)
T ss_dssp             BCCBTTBEEEECCTT
T ss_pred             cccccCcEEEEcChh
Confidence            899999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-33  Score=317.21  Aligned_cols=335  Identities=23%  Similarity=0.217  Sum_probs=259.7

Q ss_pred             CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 004005          304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL  383 (779)
Q Consensus       304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (779)
                      +++++.+++++|.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456777777777776 6666666667777777777777777666677777777888887777777766677777778888


Q ss_pred             EccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccc
Q 004005          384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  463 (779)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  463 (779)
                      ++++|.+....+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+++..  ...+++|+.|++++|.+.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence            88877777655566677778888888887777777777777788888888887776542  2335677788887776643


Q ss_pred             ccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 004005          464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD  543 (779)
Q Consensus       464 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  543 (779)
                            +...++|+.|++++|.+....+. +  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|.
T Consensus       207 ------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          207 ------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             ------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence                  34456789999999988754332 2  3689999999999985  35688899999999999999877777765


Q ss_pred             cCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCC
Q 004005          544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  623 (779)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~  623 (779)
                      .++                                                     +|+.|+|++|.+++ +|..+..++
T Consensus       276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred             Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence            543                                                     79999999999985 577778899


Q ss_pred             CCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCccccc
Q 004005          624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE  703 (779)
Q Consensus       624 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  703 (779)
                      +|+.|+|++|.++ .+|..+..+++|++|+|++|++.+..   +..+++|+.|++++|+++|.+..  ..+..+....+.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~  375 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD  375 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence            9999999999999 56777889999999999999998653   67788999999999999988654  456677777788


Q ss_pred             CCCCCCCCC
Q 004005          704 GNTFLCGLP  712 (779)
Q Consensus       704 ~n~~~c~~~  712 (779)
                      +++..|+.+
T Consensus       376 ~~~~~C~~~  384 (597)
T 3oja_B          376 DADQHCKID  384 (597)
T ss_dssp             CCCCCCCTT
T ss_pred             cccccCCcc
Confidence            888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.2e-32  Score=291.85  Aligned_cols=354  Identities=19%  Similarity=0.197  Sum_probs=200.2

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT  130 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~  130 (779)
                      .+++|++|++++|.++     .+| ++..+++|++|++++|.+++. |  ++.+++|++|++++|++.+ ++   +++++
T Consensus        40 ~l~~L~~L~Ls~n~l~-----~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~  106 (457)
T 3bz5_A           40 QLATLTSLDCHNSSIT-----DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLT  106 (457)
T ss_dssp             HHTTCCEEECCSSCCC-----CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred             HcCCCCEEEccCCCcc-----cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence            4556666666665552     223 455556666666666655542 2  5555666666666666552 32   55566


Q ss_pred             CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005          131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE  210 (779)
Q Consensus       131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  210 (779)
                      +|++|++++|.+++ +   .++.+++|++|++++|.+++..      +....+|+.|+++.+.... .+  .+..+++|+
T Consensus       107 ~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L~  173 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKIT-KL--DVTPQTQLT  173 (457)
T ss_dssp             TCCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCC-CC--CCTTCTTCC
T ss_pred             cCCEEECCCCcCCe-e---cCCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCccc-cc--ccccCCcCC
Confidence            66666666665553 1   1455556666666665555421      2333455555553332222 22  245566777


Q ss_pred             EEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC
Q 004005          211 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM  290 (779)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~  290 (779)
                      +|++++|.+++ +|   +..+++|++|++++|.+.+.   ++..+++|++|++++|.+++ +|   ...+++|+.|++++
T Consensus       174 ~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          174 TLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV  242 (457)
T ss_dssp             EEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred             EEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence            77777777764 44   35677777777777777654   46677777777777777764 55   23366777777777


Q ss_pred             CCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccC
Q 004005          291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI  370 (779)
Q Consensus       291 n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  370 (779)
                      |.+++..   +..+++|+.|++++|.               |+.|++++|...+..+  +..+++|+.|++++|...+.+
T Consensus       243 N~l~~~~---~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          243 NPLTELD---VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred             CcCCCcC---HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence            7777543   3455666666665542               3445556665444333  345677777777777665554


Q ss_pred             CccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCccc
Q 004005          371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS  450 (779)
Q Consensus       371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  450 (779)
                      |.   ..++|+.|++++             +++|++|++++|++++.   .+..+++|+.|++++|++++.       +.
T Consensus       303 ~~---~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l-------~~  356 (457)
T 3bz5_A          303 DC---QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF-------SS  356 (457)
T ss_dssp             EC---TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-------TT
T ss_pred             cc---CCCcceEechhh-------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc-------cc
Confidence            42   223344433333             24566666666666653   255666666666666666542       23


Q ss_pred             ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcc
Q 004005          451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW  493 (779)
Q Consensus       451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  493 (779)
                      |..|.+..|.+.+.      ..+..++.+++++|++++.+|..
T Consensus       357 L~~L~l~~n~l~g~------~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          357 VGKIPALNNNFEAE------GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GGGSSGGGTSEEEE------EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccccccCCcEEec------ceeeecCccccccCcEEEEcChh
Confidence            44455555555443      12345556666666666665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.9e-31  Score=280.66  Aligned_cols=304  Identities=24%  Similarity=0.345  Sum_probs=192.7

Q ss_pred             CCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEE
Q 004005          280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  359 (779)
Q Consensus       280 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  359 (779)
                      +++++.|+++++.+.. ++ .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+...  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4567777777766653 23 2666667777777776665 4443  34566666666666666542  245566666666


Q ss_pred             EccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005          360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  439 (779)
                      ++++|.+.+..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            666666654322  556666666666666444332 235566666666666666554322  455556666666655544


Q ss_pred             cCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc
Q 004005          440 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC  519 (779)
Q Consensus       440 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  519 (779)
                      +.                        +.  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++++..+  +.
T Consensus       191 ~~------------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 DI------------------------SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CC------------------------GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             cc------------------------cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            21                        11  5566777777777777765433  6667777777777777775433  67


Q ss_pred             CCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecccccc
Q 004005          520 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS  599 (779)
Q Consensus       520 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (779)
                      .+++|++|++++|.+++.  ..+..                                                     ++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred             cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence            777777777777776642  11211                                                     33


Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      +|++|++++|++++.  ..+..+++|++|++++|++++..+..|..+++|++|++++|++++..|  +..+++|++|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            677788888877743  357777788888888888877777777778888888888888876555  6777888888888


Q ss_pred             CCcCc
Q 004005          680 YNNLS  684 (779)
Q Consensus       680 ~N~l~  684 (779)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.3e-32  Score=281.77  Aligned_cols=260  Identities=34%  Similarity=0.570  Sum_probs=211.9

Q ss_pred             CCCCEEEccCCCCCC--CcCccccCCCCCcEEEccC-CcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEE
Q 004005          378 SSLEGLYLNNNSLLG--KIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQV  454 (779)
Q Consensus       378 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  454 (779)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|++++              
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence            356666666666665  5566666666667777663 66666666666677777777777666653              


Q ss_pred             EccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCC-CCCEEEccCCc
Q 004005          455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-QLQLLDLSNNN  533 (779)
Q Consensus       455 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~  533 (779)
                               .++.. |..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|.
T Consensus       116 ---------~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ---------AIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------ECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ---------cCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                     23332 66778888888888888877888888888888888888888877888888887 88899999988


Q ss_pred             CCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccc
Q 004005          534 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG  613 (779)
Q Consensus       534 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  613 (779)
                      +++.+|..+..+                                                      .|++|++++|++++
T Consensus       186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred             eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence            887777666543                                                      28899999999998


Q ss_pred             cCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccc
Q 004005          614 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ  693 (779)
Q Consensus       614 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~  693 (779)
                      ..|..+..+++|+.|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            8999999999999999999999976665 889999999999999999999999999999999999999999999987 78


Q ss_pred             cccCCcccccCCCCCCCCCCCCCC
Q 004005          694 FATFNESSYEGNTFLCGLPLPICR  717 (779)
Q Consensus       694 ~~~~~~~~~~~n~~~c~~~l~~c~  717 (779)
                      +.++..+.+.+|++.|+.|++.|.
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccChHHhcCCCCccCCCCCCCC
Confidence            999999999999999998887773

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-31  Score=286.80  Aligned_cols=313  Identities=20%  Similarity=0.226  Sum_probs=270.8

Q ss_pred             CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005          329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  408 (779)
Q Consensus       329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  408 (779)
                      +++++.++++++.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            68899999999999987777788999999999999999988888999999999999999999988888899999999999


Q ss_pred             ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCC
Q 004005          409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  487 (779)
Q Consensus       409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~  487 (779)
                      +++|.++...+..|.++++|++|++++|++.+..+..+. +++|+.|++++|.+.+. +   +..+++|+.|++++|.+.
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccccccc
Confidence            999999976666678999999999999999988776554 78999999999998653 2   566899999999999887


Q ss_pred             CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhc
Q 004005          488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  567 (779)
Q Consensus       488 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (779)
                      +     +...++|+.|++++|.++....   ...++|+.|++++|.+++.  ..+..                       
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~-----------------------  246 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN-----------------------  246 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred             c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC-----------------------
Confidence            4     2345789999999999985533   2357999999999998753  22222                       


Q ss_pred             ccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC
Q 004005          568 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  647 (779)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  647 (779)
                                                    +++|++|++++|.+.+..|..+..+++|++|++++|++++ .|..+..++
T Consensus       247 ------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          247 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred             ------------------------------CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence                                          3479999999999998889999999999999999999995 566778899


Q ss_pred             CCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005          648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  713 (779)
Q Consensus       648 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  713 (779)
                      +|++|++++|++. .+|..+..+++|++|++++|+++.. |  +..+.++..+.+.+|++.|+|..
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence            9999999999998 5677788899999999999999855 4  46778889999999999998743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.1e-30  Score=274.99  Aligned_cols=308  Identities=27%  Similarity=0.363  Sum_probs=252.5

Q ss_pred             CcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCC
Q 004005          251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV  330 (779)
Q Consensus       251 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~  330 (779)
                      .+..+++|++|+++++.+. .++.  ...+++|++|++++|.+++..+  +..+++|++|++++|.+. .++.  +..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence            4456789999999999997 5553  3448999999999999986443  899999999999999998 5553  55799


Q ss_pred             CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005          331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP  410 (779)
Q Consensus       331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (779)
                      +|++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            99999999999987544  7899999999999997664444 48999999999999999886544  8899999999999


Q ss_pred             CCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCcc
Q 004005          411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI  490 (779)
Q Consensus       411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  490 (779)
                      +|.+.+..+  +..+++|+.+++++|.+.+..+                          +..+++|++|++++|.+++..
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCc
Confidence            999986543  7889999999999988764221                          556788888888888888544


Q ss_pred             CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005          491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  570 (779)
Q Consensus       491 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (779)
                      +  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..                          
T Consensus       238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------  285 (347)
T 4fmz_A          238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN--------------------------  285 (347)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG--------------------------
T ss_pred             c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC--------------------------
Confidence            4  77888999999999988853  4578889999999999988753  12222                          


Q ss_pred             cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCC
Q 004005          571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE  650 (779)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  650 (779)
                                                 +++|++|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+
T Consensus       286 ---------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          286 ---------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             ---------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             ---------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence                                       3479999999999998888889999999999999999997665  88899999


Q ss_pred             EEECCCCcCC
Q 004005          651 SLDLSNNKLN  660 (779)
Q Consensus       651 ~L~L~~N~l~  660 (779)
                      +|++++|+++
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=6.8e-31  Score=296.35  Aligned_cols=312  Identities=20%  Similarity=0.229  Sum_probs=272.4

Q ss_pred             CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005          329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  408 (779)
Q Consensus       329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  408 (779)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            67899999999999988877788999999999999999988888999999999999999999988888899999999999


Q ss_pred             ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCC
Q 004005          409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  487 (779)
Q Consensus       409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~  487 (779)
                      +++|.+++..+..|.++++|++|++++|.+.+..+..+. +++|+.|++++|.+.+. +   +..+++|+.|++++|.+.
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccc
Confidence            999999977777789999999999999999988887664 78999999999998653 2   556789999999999887


Q ss_pred             CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhc
Q 004005          488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  567 (779)
Q Consensus       488 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (779)
                      +     +...++|+.|++++|.++...+..   .++|+.|++++|.+++.  ..+..                       
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~-----------------------  252 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN-----------------------  252 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred             c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence            4     345578999999999998544332   36899999999998752  33322                       


Q ss_pred             ccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC
Q 004005          568 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  647 (779)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  647 (779)
                                                    +++|+.|++++|.+.+..|..|..+++|+.|+|++|++++ +|..+..++
T Consensus       253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred             ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence                                          3479999999999999889999999999999999999996 567778899


Q ss_pred             CCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005          648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       648 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      +|+.|+|++|++. .+|..+..+++|++|++++|++++..   +..+..+..+.+.+|++.|+|.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence            9999999999998 67888899999999999999998653   3567788899999999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-29  Score=263.76  Aligned_cols=291  Identities=23%  Similarity=0.302  Sum_probs=202.7

Q ss_pred             CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  385 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (779)
                      +++.++++++.+. .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4566666666665 555433   356777777777777666666777777777777777777666777777777777777


Q ss_pred             cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccccc
Q 004005          386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  465 (779)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  465 (779)
                      ++|.+.. +|..+.  ++|++|++++|.+.+..+..+.++++|+.|++++|.+...                      ..
T Consensus       108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  162 (330)
T 1xku_A          108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  162 (330)
T ss_dssp             CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence            7777763 333332  6777777777777766666677777788887777766421                      11


Q ss_pred             CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccC
Q 004005          466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  545 (779)
Q Consensus       466 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  545 (779)
                      ....+.++++|++|++++|.++. +|..+.  ++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            12236677778888888887774 343332  678888888888877767777888888888888887776555555433


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCC
Q 004005          546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L  625 (779)
                                                                           ++|++|++++|+++ .+|..+..+++|
T Consensus       240 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          240 -----------------------------------------------------PHLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             -----------------------------------------------------TTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             -----------------------------------------------------CCCCEEECCCCcCc-cCChhhccCCCc
Confidence                                                                 36888888888887 677778888888


Q ss_pred             CEEECcccccccCCCCCCCCC------CCCCEEECCCCcCCC--CCcccccCCCCCcEEeccCCc
Q 004005          626 QTLNLSHNNLTGSIPSTFSNL------KHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN  682 (779)
Q Consensus       626 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~  682 (779)
                      ++|++++|++++..+..|...      +.++.|++++|++..  ..|..|..+.+++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888888887776666543      678888888888864  566778888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=9.6e-30  Score=265.40  Aligned_cols=290  Identities=22%  Similarity=0.289  Sum_probs=201.6

Q ss_pred             CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  385 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (779)
                      +++.++++++.+. .+|..+   .++++.|++++|.+.+..+..+..+++|++|++++|++.+..|.+|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5677777777766 666544   356777777777777766667777788888888888777776777777888888888


Q ss_pred             cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccccc
Q 004005          386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  465 (779)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  465 (779)
                      ++|.+.. +|..+.  ++|++|++++|.+.+..+..+.++++|+.|++++|.+...                      ..
T Consensus       110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            8887763 333333  6778888888877766666677778888888877776521                      01


Q ss_pred             CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccC
Q 004005          466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  545 (779)
Q Consensus       466 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  545 (779)
                      ....+..+ +|+.|++++|.+++ +|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            11224444 67777777777764 343332  567777777777776666677777777777777777776655555443


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCC
Q 004005          546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L  625 (779)
                      +                                                     +|++|++++|+++ .+|..+..+++|
T Consensus       241 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          241 P-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCccC
Confidence            2                                                     6778888888777 567777888888


Q ss_pred             CEEECcccccccCCCCCCCCC------CCCCEEECCCCcCC--CCCcccccCCCCCcEEeccCCc
Q 004005          626 QTLNLSHNNLTGSIPSTFSNL------KHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN  682 (779)
Q Consensus       626 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~  682 (779)
                      ++|++++|++++..+..|...      ++|+.|++++|++.  ...|..|..+++|+.+++++|.
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888887766666653      56788888888887  5677778888888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.7e-29  Score=259.46  Aligned_cols=267  Identities=18%  Similarity=0.217  Sum_probs=180.8

Q ss_pred             CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005          379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  458 (779)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  458 (779)
                      .++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++++|+++......+  ++|+.|++++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~  130 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE  130 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence            44445555554444444444455555555555555544444455555555555555555543222221  4555555555


Q ss_pred             cccccccCcccccCCCCccEEeccCccCCC--ccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCC
Q 004005          459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG  536 (779)
Q Consensus       459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  536 (779)
                      |.+.+ ++...|.++++|+.|++++|.+..  ..+..+.++++|+.|++++|.++. .|..+.  ++|++|++++|.+++
T Consensus       131 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          131 NEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             Ccccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            55533 333347788899999999998864  567778888999999999998885 343332  789999999998887


Q ss_pred             CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc
Q 004005          537 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP  616 (779)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  616 (779)
                      ..+..+..++                                                     +|++|++++|++++..+
T Consensus       207 ~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          207 VDAASLKGLN-----------------------------------------------------NLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             ECTGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred             cCHHHhcCCC-----------------------------------------------------CCCEEECCCCcCceeCh
Confidence            6666665443                                                     78899999999988777


Q ss_pred             ccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccC------CCCCcEEeccCCcCcc--cCC
Q 004005          617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLSG--EIP  688 (779)
Q Consensus       617 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~p  688 (779)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      ..+++.+++++|++..  ..|
T Consensus       234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~  312 (330)
T 1xku_A          234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  312 (330)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence            78888899999999999988 67778888999999999999998777766653      3678889999998864  444


Q ss_pred             CCccccccCCcccccCC
Q 004005          689 EWKAQFATFNESSYEGN  705 (779)
Q Consensus       689 ~~~~~~~~~~~~~~~~n  705 (779)
                      ..+..+..+..+.+++|
T Consensus       313 ~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGTTCCCGGGEEC---
T ss_pred             cccccccceeEEEeccc
Confidence            55556666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.3e-29  Score=259.20  Aligned_cols=251  Identities=25%  Similarity=0.290  Sum_probs=140.0

Q ss_pred             ccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEE
Q 004005          257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA  336 (779)
Q Consensus       257 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  336 (779)
                      +++.++++++.++ .+|..+.   +++++|++++|.+++..|..|.++++|++|++++|                     
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------------   88 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN---------------------   88 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS---------------------
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC---------------------
Confidence            4555666655554 4444332   34555555555554444444444555555555544                     


Q ss_pred             ccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccC
Q 004005          337 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG  416 (779)
Q Consensus       337 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  416 (779)
                          .+.+..+..+..+++|++|++++|.+.. +|..+.  ++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus        89 ----~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           89 ----KISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             ----CCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             ----ccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence                4444444445555555555555555542 222222  455566666665554444455556666666666665542


Q ss_pred             --CcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccc
Q 004005          417 --PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV  494 (779)
Q Consensus       417 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  494 (779)
                        ..+..+..+ +|+.|++++|++++.....+  ++|+.|++++|.+.+..+. .|..+++|+.|++++|.+++..+..+
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSL  237 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred             CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHh
Confidence              444555555 66666666666654322211  3455555555555333222 36667777777777777776666667


Q ss_pred             cCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005          495 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  544 (779)
Q Consensus       495 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  544 (779)
                      ..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            77777777777777776 45555667777777777777776555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.6e-30  Score=268.02  Aligned_cols=255  Identities=31%  Similarity=0.500  Sum_probs=172.9

Q ss_pred             CCCCEEEccCCcCCc--cCCccccCCCCCCEEEccC-CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcE
Q 004005          354 TNLQWLQLEGNRFVG--EIPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  430 (779)
Q Consensus       354 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  430 (779)
                      .+++.|++++|.+.+  ..|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456777777777776  6666777777777777774 6676667777777777777777777777667777777777777


Q ss_pred             EEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCC-CCCEEEccCCc
Q 004005          431 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS-QLSHLILGHNN  509 (779)
Q Consensus       431 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~  509 (779)
                      |++++|.+.+..+.                       . +..+++|++|++++|.+++.+|..+..++ +|+.|++++|+
T Consensus       130 L~Ls~N~l~~~~p~-----------------------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          130 LDFSYNALSGTLPP-----------------------S-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCCG-----------------------G-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             EeCCCCccCCcCCh-----------------------H-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            77777776643332                       1 45556666666666666655666666665 66666666666


Q ss_pred             ccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccc
Q 004005          510 LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI  589 (779)
Q Consensus       510 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (779)
                      +++..|..+..++ |+.|++++|.+++..|..+..++                                           
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------  221 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------  221 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-------------------------------------------
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC-------------------------------------------
Confidence            6666666666655 66666666666655555444332                                           


Q ss_pred             eeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccC
Q 004005          590 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE  669 (779)
Q Consensus       590 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  669 (779)
                                +|++|++++|++++..|. +..+++|++|++++|++++..|..|..+++|++|++++|++++.+|.. ..
T Consensus       222 ----------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          222 ----------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             ----------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             ----------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence                      567777777777654444 666777777777777777777777777777777777777777777765 66


Q ss_pred             CCCCcEEeccCCcCcccCC
Q 004005          670 LKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       670 l~~L~~L~l~~N~l~~~~p  688 (779)
                      +++|+.+++++|+.-|..|
T Consensus       290 l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTT
T ss_pred             ccccChHHhcCCCCccCCC
Confidence            7777777777777444333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=8.2e-33  Score=303.53  Aligned_cols=209  Identities=17%  Similarity=0.128  Sum_probs=134.9

Q ss_pred             CCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCC----CCcCcCCCCccCEEEccCCcCCCCCCccccccCC-
Q 004005          207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP----FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP-  281 (779)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~-  281 (779)
                      ++|++|+++++.+++.....++..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788888888777554444457788888888888887642    3445667788888888888876544444444454 


Q ss_pred             ---CCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCccccchhhhh----CCCCCCEEEccCcccCccC----
Q 004005          282 ---SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQFLALSNNNLQGHL----  346 (779)
Q Consensus       282 ---~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~----  346 (779)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+....    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    45777888889999999988887444433322    2456778888777776533    


Q ss_pred             cccCCCCCCCCEEEccCCcCCccCCcccc-----CCCCCCEEEccCCCCCCC----cCccccCCCCCcEEEccCCccc
Q 004005          347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLE  415 (779)
Q Consensus       347 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~  415 (779)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+.+.    ++..+..+++|++|++++|.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence            33344566777777777766543322222     244666666666665542    2334444555555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=8.4e-33  Score=303.42  Aligned_cols=280  Identities=22%  Similarity=0.178  Sum_probs=163.2

Q ss_pred             CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCccccchhhhhCCC-
Q 004005          256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV-  330 (779)
Q Consensus       256 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-  330 (779)
                      ++|++|++++|.+++.....++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4667777777776533333334446777777777777764    34556777788888888888877555555555555 


Q ss_pred             ---CCCEEEccCcccCc----cCcccCCCCCCCCEEEccCCcCCccCCccc-----cCCCCCCEEEccCCCCCCCc----
Q 004005          331 ---NLQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNNSLLGKI----  394 (779)
Q Consensus       331 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~----  394 (779)
                         +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+.+..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888887774    335666777888888888887764333222     23456888888888776533    


Q ss_pred             CccccCCCCCcEEEccCCcccCCcCcccC-----CCCCCcEEEccCCcCccCC----CCcc-CcccccEEEccCcccccc
Q 004005          395 PRWLGNLTRLQYIIMPNNHLEGPIPVEFC-----QLDSLQILDISDNNISGSL----PSCF-HPLSIKQVHLSKNMLHGQ  464 (779)
Q Consensus       395 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~-~~~~L~~L~l~~n~~~~~  464 (779)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++..    +..+ .+++|+.|++++|.+...
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            34455667777888877776643333322     2557777777777665421    1111 134555555555544321


Q ss_pred             ----cCcccccCCCCccEEeccCccCCCc----cCccccCCCCCCEEEccCCccccccccccc-----CCCCCCEEEccC
Q 004005          465 ----LKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEGEVSVQLC-----ELNQLQLLDLSN  531 (779)
Q Consensus       465 ----~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~  531 (779)
                          +....+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+.     ..++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                1111122355566666666655532    344444455666666666655433222221     124555666665


Q ss_pred             CcCC
Q 004005          532 NNLH  535 (779)
Q Consensus       532 n~l~  535 (779)
                      |.++
T Consensus       323 n~l~  326 (461)
T 1z7x_W          323 CSFT  326 (461)
T ss_dssp             SCCB
T ss_pred             CCCc
Confidence            5554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=259.04  Aligned_cols=289  Identities=22%  Similarity=0.256  Sum_probs=192.3

Q ss_pred             CEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC
Q 004005          357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN  436 (779)
Q Consensus       357 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  436 (779)
                      +.++..+..++ .+|..+.  ++++.|++++|.+....+..|.++++|++|++++|.+.++.+..|.++++|++|++++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            34444444444 2333332  35566666666665555555666666666666666666555556666666666666666


Q ss_pred             cCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCC-ccccccc
Q 004005          437 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGEVS  515 (779)
Q Consensus       437 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  515 (779)
                      +++..                        +...|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+
T Consensus       123 ~l~~~------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          123 RLTTI------------------------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CCSSC------------------------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             cCCee------------------------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            65532                        2223556667777777777776655666777777777777774 3443444


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005          516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  595 (779)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (779)
                      ..|..+++|+.|++++|.++.. |. +.                                                    
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~~-~~-~~----------------------------------------------------  204 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLREI-PN-LT----------------------------------------------------  204 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSSC-CC-CT----------------------------------------------------
T ss_pred             chhhcccccCeecCCCCcCccc-cc-cC----------------------------------------------------
Confidence            4677778888888888877632 21 21                                                    


Q ss_pred             ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005          596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  675 (779)
Q Consensus       596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  675 (779)
                       .+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|+.
T Consensus       205 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          205 -PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             -TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             -CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence             1347999999999999888999999999999999999999999999999999999999999999888888999999999


Q ss_pred             EeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          676 FSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDD  733 (779)
Q Consensus       676 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~~  733 (779)
                      |++++|++.|.|..  .++..|.......+. .+   ...|..|....++.+...+..
T Consensus       284 L~L~~Np~~CdC~l--~~l~~~~~~~~~~~~-~~---~~~C~~P~~l~g~~l~~l~~~  335 (440)
T 3zyj_A          284 IHLHHNPWNCNCDI--LWLSWWIKDMAPSNT-AC---CARCNTPPNLKGRYIGELDQN  335 (440)
T ss_dssp             EECCSSCEECSSTT--HHHHHHHHTTSCSSC-SC---CCBEEESTTTTTCBCC----C
T ss_pred             EEcCCCCccCCCCc--hHHHHHHHhccccCC-cc---ccCCCChhHhcCccHhHhhhh
Confidence            99999999998874  222222111101110 00   123777777777665554433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-27  Score=260.49  Aligned_cols=233  Identities=21%  Similarity=0.194  Sum_probs=168.0

Q ss_pred             CCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEcc
Q 004005          378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS  457 (779)
Q Consensus       378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  457 (779)
                      ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++.                
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------  138 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI----------------  138 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC----------------
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc----------------
Confidence            3455555555555554455555555555555555555555555555666666666666655422                


Q ss_pred             CcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCC-cccccccccccCCCCCCEEEccCCcCCC
Q 004005          458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGEVSVQLCELNQLQLLDLSNNNLHG  536 (779)
Q Consensus       458 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~  536 (779)
                              +...|.++++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|+.|++++|.+++
T Consensus       139 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          139 --------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             --------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             --------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence                    2223555666667777776666555556667777777777763 4443444457777788888888887764


Q ss_pred             CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc
Q 004005          537 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP  616 (779)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  616 (779)
                      . | .+.                                                     .+++|++|++++|++++..|
T Consensus       211 ~-~-~~~-----------------------------------------------------~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          211 M-P-NLT-----------------------------------------------------PLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             C-C-CCT-----------------------------------------------------TCTTCCEEECTTSCCSEECG
T ss_pred             c-c-ccc-----------------------------------------------------ccccccEEECcCCcCcccCc
Confidence            3 2 121                                                     13479999999999998889


Q ss_pred             ccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       617 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      ..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++.|.|..
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999999999999999999999999999999999999988888889999999999999999998874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.8e-28  Score=253.27  Aligned_cols=209  Identities=24%  Similarity=0.246  Sum_probs=146.9

Q ss_pred             CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 004005          304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL  383 (779)
Q Consensus       304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (779)
                      ++.....+.+++.++ .+|..+   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455677777776 666644   3467777777777776666667777777777777777776666677777777777


Q ss_pred             EccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCc-CccCCCCccCcccccEEEccCccc
Q 004005          384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNML  461 (779)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~  461 (779)
                      ++++|.+.+..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|+ +.                      
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----------------------  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------------  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence            777777775544556777777777777777764433 356667777777777663 32                      


Q ss_pred             ccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCc
Q 004005          462 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP  540 (779)
Q Consensus       462 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  540 (779)
                        .++...|.++++|++|++++|.+.+..|..+..+++|++|++++|+++......+..+++|+.|++++|.+++..+.
T Consensus       164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence              23333477788888888888888877788888888888888888888754444455678888888888887754433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.6e-28  Score=247.69  Aligned_cols=201  Identities=20%  Similarity=0.247  Sum_probs=133.1

Q ss_pred             ccCCCCccEEeccCccCCCccC-ccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCC-CCCcccccCcc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTL  547 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~  547 (779)
                      +..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+..+  
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l--  174 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL--  174 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC--
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC--
Confidence            4445556666666665554333 345556666666666666665555556666666666666666554 233333332  


Q ss_pred             cccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCE
Q 004005          548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT  627 (779)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  627 (779)
                                                                         ++|++|++++|++++..|..+..+++|++
T Consensus       175 ---------------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          175 ---------------------------------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             ---------------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ---------------------------------------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence                                                               36777888888887777788888889999


Q ss_pred             EECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC-CCcEEeccCCcCcccCCC-Cc-cccccCCcccccC
Q 004005          628 LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPE-WK-AQFATFNESSYEG  704 (779)
Q Consensus       628 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~-~~-~~~~~~~~~~~~~  704 (779)
                      |++++|++++..+..|..+++|++|++++|++.+..|..+..++ +|++|++++|+++|.++. ++ .++..........
T Consensus       204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~  283 (306)
T 2z66_A          204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV  283 (306)
T ss_dssp             EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCG
T ss_pred             EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccc
Confidence            99999998877777888899999999999999988888888874 899999999999987653 11 1222222222233


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          705 NTFLCGLPLPICRSPATMPEASIGNE  730 (779)
Q Consensus       705 n~~~c~~~l~~c~~~~~~~~~~~~~~  730 (779)
                      +..       .|..|....+.++.++
T Consensus       284 ~~~-------~C~~p~~~~g~~~~~~  302 (306)
T 2z66_A          284 ERM-------ECATPSDKQGMPVLSL  302 (306)
T ss_dssp             GGC-------BEEESGGGTTCBGGGC
T ss_pred             ccc-------ccCCchhhCCceeeee
Confidence            322       3666766666554433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.5e-27  Score=253.01  Aligned_cols=253  Identities=24%  Similarity=0.288  Sum_probs=214.6

Q ss_pred             CCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCc
Q 004005          380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  459 (779)
Q Consensus       380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  459 (779)
                      .+.++..+..+. .+|..+.  ++++.|++++|++....+..|.++++|++|++++|.+.+                   
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-------------------  102 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-------------------  102 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-------------------
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-------------------
Confidence            457777777776 4454443  678888888888887777778888888888888887653                   


Q ss_pred             ccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC-C
Q 004005          460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-I  538 (779)
Q Consensus       460 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~  538 (779)
                           ++...|.++++|++|++++|++++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|+..+. .
T Consensus       103 -----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          103 -----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             -----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             -----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence                 3334488899999999999999987778899999999999999999988888899999999999999654333 3


Q ss_pred             CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005          539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ  618 (779)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  618 (779)
                      +..|..+                                                     ++|++|++++|+++. +| .
T Consensus       178 ~~~~~~l-----------------------------------------------------~~L~~L~L~~n~l~~-~~-~  202 (440)
T 3zyj_A          178 EGAFEGL-----------------------------------------------------SNLRYLNLAMCNLRE-IP-N  202 (440)
T ss_dssp             TTTTTTC-----------------------------------------------------SSCCEEECTTSCCSS-CC-C
T ss_pred             cchhhcc-----------------------------------------------------cccCeecCCCCcCcc-cc-c
Confidence            3344443                                                     479999999999984 55 5


Q ss_pred             ccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCC
Q 004005          619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN  698 (779)
Q Consensus       619 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~  698 (779)
                      +..+++|++|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|++++|+++...+..+..+.++.
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999988888888899999


Q ss_pred             cccccCCCCCCCCCCC
Q 004005          699 ESSYEGNTFLCGLPLP  714 (779)
Q Consensus       699 ~~~~~~n~~~c~~~l~  714 (779)
                      .+.+.+|||.|+|.+.
T Consensus       283 ~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          283 RIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             EEECCSSCEECSSTTH
T ss_pred             EEEcCCCCccCCCCch
Confidence            9999999999999764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.9e-28  Score=253.21  Aligned_cols=281  Identities=19%  Similarity=0.176  Sum_probs=220.7

Q ss_pred             CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005          329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  408 (779)
Q Consensus       329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  408 (779)
                      |+.....+.+++.++.+. ..+  .++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSSCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCccccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            555556777888877543 333  25788888888888876666788888888888888888877777788888888888


Q ss_pred             ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCc-ccccCCCCccEEeccCc-cC
Q 004005          409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYN-RL  486 (779)
Q Consensus       409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~i  486 (779)
                      +++|++++..+..+.++++|++|++++|++.+                        ++. ..|..+++|++|++++| .+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence            88888886655557888888888888887763                        222 34778999999999999 47


Q ss_pred             CCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhh
Q 004005          487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFS  566 (779)
Q Consensus       487 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (779)
                      .+..+..+.++++|+.|++++|++++..+..+..+++|++|++++|.+....+..+.                       
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------  219 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-----------------------  219 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-----------------------
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh-----------------------
Confidence            766778899999999999999999988899999999999999999987532211111                       


Q ss_pred             cccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccc---cCCCCCCEEECccccccc----CC
Q 004005          567 IEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI---GNLTRIQTLNLSHNNLTG----SI  639 (779)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~----~~  639 (779)
                                                    .+++|++|++++|++++..+..+   .....++.++++++.+.+    .+
T Consensus       220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                          13479999999999987655543   345678889999888875    35


Q ss_pred             CCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          640 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       640 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      |..+..+++|++|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            67788999999999999999954444468999999999999999998873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-26  Score=252.28  Aligned_cols=272  Identities=22%  Similarity=0.268  Sum_probs=226.5

Q ss_pred             CCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCc
Q 004005          380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  459 (779)
Q Consensus       380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  459 (779)
                      ...++.++..++ .+|..+.  ++++.|++++|.+++..+..|.++++|+.|++++|++.+.                  
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~------------------  114 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI------------------  114 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE------------------
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc------------------
Confidence            456777776666 3454333  6788888888888877777888888888888888877633                  


Q ss_pred             ccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC-C
Q 004005          460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-I  538 (779)
Q Consensus       460 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~  538 (779)
                            +...|.++++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|+..+. .
T Consensus       115 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          115 ------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             ------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             ------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence                  233488899999999999999988888899999999999999999987788899999999999999544333 3


Q ss_pred             CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005          539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ  618 (779)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  618 (779)
                      +..|..                                                     +++|++|++++|++++ +| .
T Consensus       189 ~~~~~~-----------------------------------------------------l~~L~~L~L~~n~l~~-~~-~  213 (452)
T 3zyi_A          189 EGAFEG-----------------------------------------------------LFNLKYLNLGMCNIKD-MP-N  213 (452)
T ss_dssp             TTTTTT-----------------------------------------------------CTTCCEEECTTSCCSS-CC-C
T ss_pred             hhhccC-----------------------------------------------------CCCCCEEECCCCcccc-cc-c
Confidence            333433                                                     3479999999999985 44 5


Q ss_pred             ccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCC
Q 004005          619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN  698 (779)
Q Consensus       619 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~  698 (779)
                      +..+++|++|+|++|++++..|..|.++++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+.++.
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999988888888899999


Q ss_pred             cccccCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCC
Q 004005          699 ESSYEGNTFLCGLPLP------------------ICRSPATMPEASIGNEQDD  733 (779)
Q Consensus       699 ~~~~~~n~~~c~~~l~------------------~c~~~~~~~~~~~~~~~~~  733 (779)
                      .+.+.+|||.|+|.+.                  .|..|....++.+...+..
T Consensus       294 ~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~  346 (452)
T 3zyi_A          294 ELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQA  346 (452)
T ss_dssp             EEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGG
T ss_pred             EEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchh
Confidence            9999999999999752                  3888888887766555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.5e-27  Score=242.32  Aligned_cols=263  Identities=23%  Similarity=0.264  Sum_probs=181.2

Q ss_pred             CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCC--cCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEE
Q 004005          354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK--IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL  431 (779)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  431 (779)
                      ++|++|++++|.+....+..|.++++|++|++++|.+...  .+..+..+++|++|++++|.+.. ++..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            3455555555555533333445555555555555555422  13334445566666666665552 34445566666666


Q ss_pred             EccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccc
Q 004005          432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE  511 (779)
Q Consensus       432 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  511 (779)
                      ++++|++.+..+                       ...+..+++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus       107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A          107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            666666553221                       123666778888888888887777777888888888888888887


Q ss_pred             c-cccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccce
Q 004005          512 G-EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA  590 (779)
Q Consensus       512 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (779)
                      + ..|..+..+++|+.|++++|.+++..|..+..++                                            
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------------------  199 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--------------------------------------------  199 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT--------------------------------------------
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC--------------------------------------------
Confidence            5 4677788888888888888888776666665433                                            


Q ss_pred             eeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC-CCCEEECCCCcCCCCCc--ccc
Q 004005          591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-HVESLDLSNNKLNGKIP--HQL  667 (779)
Q Consensus       591 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~--~~~  667 (779)
                               +|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++.+..+  ...
T Consensus       200 ---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~  270 (306)
T 2z66_A          200 ---------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL  270 (306)
T ss_dssp             ---------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred             ---------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence                     788999999999877777889999999999999999998999999985 99999999999986533  112


Q ss_pred             cCCCCCcEEeccCCcCcccCCCCccc
Q 004005          668 VELKTLEVFSVAYNNLSGEIPEWKAQ  693 (779)
Q Consensus       668 ~~l~~L~~L~l~~N~l~~~~p~~~~~  693 (779)
                      ..+...+.+.+..+.+.|..|..+..
T Consensus       271 ~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          271 QWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             HHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HHHHhhhhhhccccccccCCchhhCC
Confidence            23444555667788999988876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.5e-26  Score=235.55  Aligned_cols=264  Identities=21%  Similarity=0.211  Sum_probs=180.6

Q ss_pred             CEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcc
Q 004005          381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM  460 (779)
Q Consensus       381 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  460 (779)
                      ++++.+++.+.. +|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+++..                  
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------   72 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------------------   72 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------------
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC------------------
Confidence            344555544442 23222  245555555555555544455555666666666665554321                  


Q ss_pred             cccccCcccccCCCCccEEeccCcc-CCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005          461 LHGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  539 (779)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  539 (779)
                            ...|.++++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        73 ------~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           73 ------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             ------TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ------HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence                  1225666777777777775 665556677777777777777777776667777777888888888887776555


Q ss_pred             cccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccc
Q 004005          540 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI  619 (779)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  619 (779)
                      ..|..++                                                     +|++|++++|++++..+..+
T Consensus       147 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A          147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred             hHhccCC-----------------------------------------------------CccEEECCCCcccccCHHHh
Confidence            5554433                                                     68888888888887666778


Q ss_pred             cCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCc
Q 004005          620 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE  699 (779)
Q Consensus       620 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~  699 (779)
                      ..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.++.. ..+.++..
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~  252 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK  252 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred             cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence            99999999999999999888999999999999999999999877788999999999999999999887742 11222233


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          700 SSYEGNTFLCGLPLPICRSPATMPEASIGNEQD  732 (779)
Q Consensus       700 ~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~  732 (779)
                      .....+...       |..|....+..+.+...
T Consensus       253 ~~~~~~~~~-------c~~p~~l~g~~l~~l~~  278 (285)
T 1ozn_A          253 FRGSSSEVP-------CSLPQRLAGRDLKRLAA  278 (285)
T ss_dssp             CCSEECCCB-------EEESGGGTTCBGGGSCG
T ss_pred             cccccCccc-------cCCchHhCCcChhhcCH
Confidence            333334332       66666666655544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.2e-28  Score=275.98  Aligned_cols=427  Identities=13%  Similarity=0.060  Sum_probs=218.2

Q ss_pred             cCCCCcEEeCCCcccCCCCCCccccc------------ccCCCCCCEEeccCCCCCCCcchhhcCC-C-CCCEEEcCCCc
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQG------------LCSLVHLQELYIASNDLRGSLPWCMANM-T-SLRILDVSSNQ  116 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~------------l~~l~~L~~L~L~~~~l~~~~~~~~~~l-~-~L~~L~L~~n~  116 (779)
                      .+++|++|+++++..-.. .+.+|..            ...+++|++|+|++|.+++..+..+... + +|++|++++|.
T Consensus        71 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAM-FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             HCTTCSEEEEECSCGGGG-GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred             hCCCCeEEEecCCcchhh-cccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence            677788888776532000 0111111            1256777777777776665555555542 3 37777777665


Q ss_pred             c-cC-CCCcccccCCCCCCEEEccCccccCcCC---cccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCC
Q 004005          117 L-TG-SISSSPLVHLTSIEELMLSNNYFQIPIS---LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS  191 (779)
Q Consensus       117 l-~~-~l~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  191 (779)
                      . .. .++. ...++++|++|++++|.+++...   ......+++|++|++++|.+.+...                   
T Consensus       150 ~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-------------------  209 (592)
T 3ogk_B          150 GFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-------------------  209 (592)
T ss_dssp             EEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-------------------
T ss_pred             CcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-------------------
Confidence            1 10 1111 23466777777777776543211   0122345556666555554431100                   


Q ss_pred             CCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCc---CCCCcCcCCCCccCEEEccCCcC
Q 004005          192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA---GPFRLPIHSHKRLRQLDVSNNNI  268 (779)
Q Consensus       192 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~i  268 (779)
                           +.++..+..+++|++|++++|.+.+ ++.. +..+++|++|.++.....   ......+..+++|+.|+++++..
T Consensus       210 -----~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  282 (592)
T 3ogk_B          210 -----KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP  282 (592)
T ss_dssp             -----HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred             -----HHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence                 1234445667788888888887764 5544 467888888888753322   22334566677888888777533


Q ss_pred             CCCCCccccccCCCCcEEECCCCCCCcccC-ccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC--------
Q 004005          269 RGHIPVKIGDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN--------  339 (779)
Q Consensus       269 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~--------  339 (779)
                      . .+|.. ...+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++        
T Consensus       283 ~-~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~  359 (592)
T 3ogk_B          283 N-EMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGME  359 (592)
T ss_dssp             T-TGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred             h-HHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence            2 33433 3336677777777777554332 234667777777777 3333333334444567777777772        


Q ss_pred             ---cccCccCccc-CCCCCCCCEEEccCCcCCccCCccccC-CCCCCEEEcc----CCCCCCC-----cCccccCCCCCc
Q 004005          340 ---NNLQGHLFSR-NFNLTNLQWLQLEGNRFVGEIPQSLSK-CSSLEGLYLN----NNSLLGK-----IPRWLGNLTRLQ  405 (779)
Q Consensus       340 ---n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~-----~~~~~~~l~~L~  405 (779)
                         +.++...... ...+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.     ++..+.++++|+
T Consensus       360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~  439 (592)
T 3ogk_B          360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR  439 (592)
T ss_dssp             STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred             cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence               3333221111 234566666666666655444333433 5666666664    3333321     111233345555


Q ss_pred             EEEccCCc--ccCCcCccc-CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEecc
Q 004005          406 YIIMPNNH--LEGPIPVEF-CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS  482 (779)
Q Consensus       406 ~L~l~~n~--~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  482 (779)
                      +|+++.|.  +++.....+ ..+++|++|++++|+++                       +......+.++++|++|+++
T Consensus       440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-----------------------DEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-----------------------HHHHHHHHTCCTTCCEEEEE
T ss_pred             EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-----------------------HHHHHHHHhcCcccCeeecc
Confidence            55554322  222211111 12344444444444433                       21111113455666666666


Q ss_pred             CccCCCc-cCccccCCCCCCEEEccCCcccccccccc-cCCCCCCEEEccC
Q 004005          483 YNRLNGS-IPDWVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSN  531 (779)
Q Consensus       483 ~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~  531 (779)
                      +|.+++. .+.....+++|+.|++++|++++.....+ ..++.+....+..
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            6665432 22233445666666666666654322222 2345554444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.6e-28  Score=278.52  Aligned_cols=417  Identities=15%  Similarity=0.054  Sum_probs=274.2

Q ss_pred             CCCCCCCCCEEeCCCCcccccc-----cccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccC-CC-CCCEE
Q 004005           14 GFPHFKSLEHFDMDFTRIALNT-----SFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCS-LV-HLQEL   86 (779)
Q Consensus        14 ~~~~l~~L~~L~L~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~-l~-~L~~L   86 (779)
                      .+.++++|++|+++++..-...     .+..+.......+...+++|++|+|++|.+    ....+..+.. ++ +|++|
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i----~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV----SDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC----CHHHHHHHHHHHGGGCCEE
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEe----cHHHHHHHHHhccccCcEE
Confidence            4568888999999887510000     000011112233333789999999999987    3333444544 34 49999


Q ss_pred             eccCCC-CCC-CcchhhcCCCCCCEEEcCCCcccCC----CCcccccCCCCCCEEEccCccccCc---CCcccccCCCCC
Q 004005           87 YIASND-LRG-SLPWCMANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQIP---ISLEPLFNYSRL  157 (779)
Q Consensus        87 ~L~~~~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----l~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L  157 (779)
                      +|++|. +.. .++....++++|++|++++|.+.+.    ++. ...++++|++|++++|.+++.   .....+..+++|
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            999886 221 1333445889999999999987644    333 456789999999999987621   111234678999


Q ss_pred             cEEEccCCccceeecccccccCCcccccEEecCCCCCCC--CCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCc
Q 004005          158 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG--FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE  235 (779)
Q Consensus       158 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  235 (779)
                      ++|++++|.+.+..    ..+...++|++|+++......  ...+..+..+++|+.++++.+... .+|.. +..+++|+
T Consensus       223 ~~L~L~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~  296 (592)
T 3ogk_B          223 VSVKVGDFEILELV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPIL-FPFAAQIR  296 (592)
T ss_dssp             CEEECSSCBGGGGH----HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGG-GGGGGGCC
T ss_pred             cEEeccCccHHHHH----HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHH-HhhcCCCc
Confidence            99999998876522    224455688999885422221  234456677788889888876432 44544 46788899


Q ss_pred             EEEcCCCcCcCCCC-cCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC-----------CCCCccc-Ccccc
Q 004005          236 TLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM-----------NALDGSI-PSSFG  302 (779)
Q Consensus       236 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~-~~~~~  302 (779)
                      +|++++|.+.+... ..+..+++|++|+++ +.+.+.....+...+++|++|++++           +.++... +....
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~  375 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ  375 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence            99999888654322 235778899999988 4443333334444578899999983           4555332 22244


Q ss_pred             CCCCCCEEEccCCcCccccchhhhhCCCCCCEEEcc----CcccCcc-----CcccCCCCCCCCEEEccCCc--CCccCC
Q 004005          303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS----NNNLQGH-----LFSRNFNLTNLQWLQLEGNR--FVGEIP  371 (779)
Q Consensus       303 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~  371 (779)
                      .+++|++|+++.+.+++..+..+...+++|++|+++    .+.+++.     ....+.++++|++|++++|.  +++...
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            588899999988888766666666668889999996    4556542     12224568889999997544  444333


Q ss_pred             ccc-cCCCCCCEEEccCCCCCCC-cCccccCCCCCcEEEccCCcccCC-cCcccCCCCCCcEEEccCCcCccCC
Q 004005          372 QSL-SKCSSLEGLYLNNNSLLGK-IPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISDNNISGSL  442 (779)
Q Consensus       372 ~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~  442 (779)
                      ..+ ..+++|++|++++|.+++. .+..+.++++|++|++++|.+++. .+..+..+++|++|++++|++++..
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence            333 3478899999998887652 344557788999999999987643 2333457888999999999877543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.4e-25  Score=228.39  Aligned_cols=225  Identities=26%  Similarity=0.268  Sum_probs=135.0

Q ss_pred             cEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccC
Q 004005          284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG  363 (779)
Q Consensus       284 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  363 (779)
                      ++++++++.++ .+|..+  .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            44555555554 233322  345555555555555 33333334455555555555555554455555555555555555


Q ss_pred             Cc-CCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCC
Q 004005          364 NR-FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL  442 (779)
Q Consensus       364 n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  442 (779)
                      |. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++   
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---  166 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---  166 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence            54 44444445555555555555555555444444555555555555555555444444445555555555555443   


Q ss_pred             CCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCC
Q 004005          443 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN  522 (779)
Q Consensus       443 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  522 (779)
                                           .++...|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..++
T Consensus       167 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          167 ---------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             ---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             ---------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence                                 23333477788888888888888877788888888888888888888877667788888


Q ss_pred             CCCEEEccCCcCCC
Q 004005          523 QLQLLDLSNNNLHG  536 (779)
Q Consensus       523 ~L~~L~l~~n~l~~  536 (779)
                      +|+.|++++|++..
T Consensus       226 ~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          226 ALQYLRLNDNPWVC  239 (285)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             ccCEEeccCCCccC
Confidence            88888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.2e-25  Score=229.70  Aligned_cols=234  Identities=20%  Similarity=0.307  Sum_probs=134.7

Q ss_pred             CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEc
Q 004005          354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  433 (779)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  433 (779)
                      +.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45666666666665 44444555666666666666665 55555666666666666666666 44556666666666666


Q ss_pred             cCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccc
Q 004005          434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  513 (779)
Q Consensus       434 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  513 (779)
                      ++|++.+..|..+..     .         .+. +.|.++++|++|++++|+++ .+|..+..+++|++|++++|++++ 
T Consensus       158 ~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            666555444332110     0         000 11344555555555555555 444445555555555555555542 


Q ss_pred             ccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeee
Q 004005          514 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY  593 (779)
Q Consensus       514 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (779)
                      .+..+..++                                                                       
T Consensus       221 l~~~l~~l~-----------------------------------------------------------------------  229 (328)
T 4fcg_A          221 LGPAIHHLP-----------------------------------------------------------------------  229 (328)
T ss_dssp             CCGGGGGCT-----------------------------------------------------------------------
T ss_pred             CchhhccCC-----------------------------------------------------------------------
Confidence            222344444                                                                       


Q ss_pred             ccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCC
Q 004005          594 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  673 (779)
Q Consensus       594 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  673 (779)
                            +|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|+.+..+++|
T Consensus       230 ------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          230 ------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             ------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             ------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence                  45555555555555566666666666666666666666666666666667777777766666667666677777


Q ss_pred             cEEeccCCcCc
Q 004005          674 EVFSVAYNNLS  684 (779)
Q Consensus       674 ~~L~l~~N~l~  684 (779)
                      +.+++..+.+.
T Consensus       304 ~~l~l~~~~~~  314 (328)
T 4fcg_A          304 CIILVPPHLQA  314 (328)
T ss_dssp             CEEECCGGGSC
T ss_pred             eEEeCCHHHHH
Confidence            77766665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=5.1e-25  Score=228.13  Aligned_cols=224  Identities=20%  Similarity=0.230  Sum_probs=179.5

Q ss_pred             CCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEe
Q 004005          401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD  480 (779)
Q Consensus       401 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  480 (779)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.+.                        .+|.. +..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------------------~lp~~-~~~l~~L~~L~  133 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ELPDT-MQQFAGLETLT  133 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------------------CCCSC-GGGGTTCSEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------------------chhHH-HhccCCCCEEE
Confidence            355666666666666 44555555666666666666555                        33333 66677788888


Q ss_pred             ccCccCCCccCccccCCCCCCEEEccCCccccccccccc---------CCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005          481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC---------ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  551 (779)
Q Consensus       481 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  551 (779)
                      +++|.++ .+|..+..+++|+.|++++|++.+..|..+.         .+++|++|++++|.++ .+|..+..+      
T Consensus       134 Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l------  205 (328)
T 4fcg_A          134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL------  205 (328)
T ss_dssp             EESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC------
T ss_pred             CCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC------
Confidence            8888777 5677777788888888888777666666554         4899999999999987 566655543      


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECc
Q 004005          552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS  631 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  631 (779)
                                                                     ++|++|++++|++++ +|..+..+++|++|+++
T Consensus       206 -----------------------------------------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          206 -----------------------------------------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             -----------------------------------------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred             -----------------------------------------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence                                                           379999999999995 67789999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCC
Q 004005          632 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNT  706 (779)
Q Consensus       632 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~  706 (779)
                      +|++.+..|..|..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|.++..+.++..+.+..+.
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888877766654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.6e-27  Score=240.55  Aligned_cols=255  Identities=22%  Similarity=0.219  Sum_probs=150.6

Q ss_pred             EccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCccc
Q 004005          336 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE  415 (779)
Q Consensus       336 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  415 (779)
                      +++.+.+.......+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+  +..+++|++|++++|.++
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence            344444433333333344455555555555554444455555555555555555543222  444555555555555444


Q ss_pred             CCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcccc
Q 004005          416 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD  495 (779)
Q Consensus       416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  495 (779)
                      +..     ..++|++|++++|++.                       +..+    ..+++|++|++++|++++..+..+.
T Consensus        94 ~l~-----~~~~L~~L~l~~n~l~-----------------------~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~  141 (317)
T 3o53_A           94 ELL-----VGPSIETLHAANNNIS-----------------------RVSC----SRGQGKKNIYLANNKITMLRDLDEG  141 (317)
T ss_dssp             EEE-----ECTTCCEEECCSSCCS-----------------------EEEE----CCCSSCEEEECCSSCCCSGGGBCTG
T ss_pred             ccc-----CCCCcCEEECCCCccC-----------------------CcCc----cccCCCCEEECCCCCCCCccchhhh
Confidence            221     1244444444444433                       2221    1246678888888888776666777


Q ss_pred             CCCCCCEEEccCCcccccccccc-cCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccc
Q 004005          496 GLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL  574 (779)
Q Consensus       496 ~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (779)
                      .+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+.                                  
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------------  187 (317)
T 3o53_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------------------------------  187 (317)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----------------------------------
T ss_pred             ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----------------------------------
Confidence            77888888888888776655555 3577778888877776532110                                  


Q ss_pred             cccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEEC
Q 004005          575 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL  654 (779)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  654 (779)
                                           ..+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++
T Consensus       188 ---------------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          188 ---------------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             ---------------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             ---------------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence                                 1134677777777777743 444777777777777777777 35666777777777777


Q ss_pred             CCCcCC-CCCcccccCCCCCcEEeccCC
Q 004005          655 SNNKLN-GKIPHQLVELKTLEVFSVAYN  681 (779)
Q Consensus       655 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N  681 (779)
                      ++|++. +..|..+..+++|+.++++++
T Consensus       245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCccCcCHHHHHhccccceEEECCCc
Confidence            777776 556666677777777777644

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.1e-26  Score=240.10  Aligned_cols=264  Identities=19%  Similarity=0.189  Sum_probs=206.6

Q ss_pred             CCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccC
Q 004005          356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD  435 (779)
Q Consensus       356 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  435 (779)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4445666666654444556667788888888888887777788888888888888888876543  77888888888888


Q ss_pred             CcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc
Q 004005          436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS  515 (779)
Q Consensus       436 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  515 (779)
                      |++++                             +...++|++|++++|.+++..+.   .+++|+.|++++|++++..+
T Consensus        90 n~l~~-----------------------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQE-----------------------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEEE-----------------------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred             Ccccc-----------------------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence            87652                             22237899999999999876544   36789999999999998888


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005          516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG  595 (779)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (779)
                      ..+..+++|+.|++++|.+++..+..+..                                                   
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------------  166 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------------------------------------------  166 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------------------------
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------------------------------
Confidence            88999999999999999998654443321                                                   


Q ss_pred             ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005          596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  675 (779)
Q Consensus       596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  675 (779)
                       .+++|++|++++|++++. + ....+++|++|++++|++++. |..|..+++|++|++++|+++ .+|..+..+++|+.
T Consensus       167 -~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~  241 (317)
T 3o53_A          167 -SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH  241 (317)
T ss_dssp             -GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred             -ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence             134799999999999865 3 334589999999999999965 445999999999999999998 56778899999999


Q ss_pred             EeccCCcCc-ccCCCCccccccCCcccccCCCCCC
Q 004005          676 FSVAYNNLS-GEIPEWKAQFATFNESSYEGNTFLC  709 (779)
Q Consensus       676 L~l~~N~l~-~~~p~~~~~~~~~~~~~~~~n~~~c  709 (779)
                      |++++|+++ +..|.++..+..+..+.+.+++...
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            999999999 5566666777666666666544333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.1e-23  Score=232.18  Aligned_cols=268  Identities=26%  Similarity=0.283  Sum_probs=166.5

Q ss_pred             CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  385 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (779)
                      .++.|++++|.++ .+|..+.   ++|+.|++++|.++.+..    .+++|++|++++|++++ +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            3555666666555 5554332   455555555555553222    34555555555555552 222   3455555555


Q ss_pred             cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccccc
Q 004005          386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  465 (779)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~  465 (779)
                      ++|.+.+. |.   .+++|+.|++++|+++. +|.   .+++|++|++++|+++                       + +
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-----------------------~-l  156 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-----------------------S-L  156 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-----------------------C-C
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-----------------------C-c
Confidence            55555432 22   33445555555555443 221   1244445555444443                       2 2


Q ss_pred             CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccC
Q 004005          466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  545 (779)
Q Consensus       466 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  545 (779)
                      +.    ..++|+.|++++|.+++ +|   ..+++|+.|++++|.+++. |.   .+++|+.|++++|.++... ..    
T Consensus       157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~~----  219 (622)
T 3g06_A          157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-AL----  219 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-CC----
T ss_pred             CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-CC----
Confidence            22    23567788888888774 44   3457788888888888743 32   2468888888888776322 11    


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCC
Q 004005          546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  625 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L  625 (779)
                                                                          +++|+.|++++|++++ +|   ..+++|
T Consensus       220 ----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L  243 (622)
T 3g06_A          220 ----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSEL  243 (622)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred             ----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcC
Confidence                                                                1368888899888885 55   455788


Q ss_pred             CEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc
Q 004005          626 QTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA  695 (779)
Q Consensus       626 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  695 (779)
                      +.|++++|+++. +|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus       244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999999998884 454   5678999999999998 6688888899999999999999888777655554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.2e-27  Score=269.24  Aligned_cols=427  Identities=13%  Similarity=0.084  Sum_probs=229.1

Q ss_pred             cCCCCcEEeCCCccc-CCCCCC----------cccccccCCCCCCEEeccCCCCCCCcchhhc-CCCCCCEEEcCCC-cc
Q 004005           51 SMPSLKYLSLSYYTL-GTNSSG----------TLDQGLCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSN-QL  117 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l-~~~~~~----------~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~-~l~~L~~L~L~~n-~l  117 (779)
                      .+++|++|+++++.. .+....          .++.....+++|++|+|++|.+++..+..+. .+++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            777888888877642 111000          0111123567788888887777766666664 6778888888777 44


Q ss_pred             cCC-CCcccccCCCCCCEEEccCccccCcCC---cccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCC
Q 004005          118 TGS-ISSSPLVHLTSIEELMLSNNYFQIPIS---LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY  193 (779)
Q Consensus       118 ~~~-l~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~  193 (779)
                      .+. ++. .+.++++|++|++++|.+++...   ......+++|++|++++|. ......                    
T Consensus       144 ~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~--------------------  201 (594)
T 2p1m_B          144 STDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFS--------------------  201 (594)
T ss_dssp             EHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHH--------------------
T ss_pred             CHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHH--------------------
Confidence            321 333 34567778888887777653211   1112345566666666654 100000                    


Q ss_pred             CCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcC-------cCCCCcCcCCCCccCEE-EccC
Q 004005          194 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL-------AGPFRLPIHSHKRLRQL-DVSN  265 (779)
Q Consensus       194 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L-~l~~  265 (779)
                          .++.....+++|++|++++|...+.++.. +..+++|++|.+..+..       .+ .+..+..+++|+.| .+.+
T Consensus       202 ----~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~  275 (594)
T 2p1m_B          202 ----ALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWD  275 (594)
T ss_dssp             ----HHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBT
T ss_pred             ----HHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcc
Confidence                01111233455555555555221123222 24555555555443321       11 11234555666666 2322


Q ss_pred             CcCCCCCCccccccCCCCcEEECCCCCCCccc-CccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC-----
Q 004005          266 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI-PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN-----  339 (779)
Q Consensus       266 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~-----  339 (779)
                      ... +.++.. ...+++|++|++++|.+++.. +..+..+++|++|++++| +.+.....+...+++|++|++..     
T Consensus       276 ~~~-~~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g  352 (594)
T 2p1m_B          276 AVP-AYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV  352 (594)
T ss_dssp             CCG-GGGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred             cch-hhHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence            211 122221 122567777777777765432 223457788888888877 43333334444578888888833     


Q ss_pred             ----cccCccCcccCC-CCCCCCEEEccCCcCCccCCcccc-CCCCCCEEEcc--C----CCCCCCc-----CccccCCC
Q 004005          340 ----NNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLS-KCSSLEGLYLN--N----NSLLGKI-----PRWLGNLT  402 (779)
Q Consensus       340 ----n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~-----~~~~~~l~  402 (779)
                          +.+++.....+. .+++|++|.+..+.+++.....+. .+++|+.|+++  +    +.+++..     +..+..++
T Consensus       353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~  432 (594)
T 2p1m_B          353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK  432 (594)
T ss_dssp             SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred             cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence                344332222222 478888888887777755444443 57888888888  3    3444211     11256678


Q ss_pred             CCcEEEccCCcccCCcCcccCC-CCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEec
Q 004005          403 RLQYIIMPNNHLEGPIPVEFCQ-LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL  481 (779)
Q Consensus       403 ~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  481 (779)
                      +|+.|++++ .+++.....+.. +++|+.|++++|.+++....                       ....++++|+.|++
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------------------~l~~~~~~L~~L~L  488 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------------------HVLSGCDSLRKLEI  488 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------------------HHHHHCTTCCEEEE
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------------------HHHhcCCCcCEEEC
Confidence            899999976 555443344443 78889999988877532111                       11134566666666


Q ss_pred             cCccCCCccCc-cccCCCCCCEEEccCCcccccccccc-cCCCCCCEEEccCC
Q 004005          482 SYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNN  532 (779)
Q Consensus       482 ~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n  532 (779)
                      ++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus       489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          489 RDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             ESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            66666433222 23345667777777776643333333 34566655555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.8e-25  Score=244.46  Aligned_cols=147  Identities=20%  Similarity=0.187  Sum_probs=72.3

Q ss_pred             CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005          379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  458 (779)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  458 (779)
                      +|+.|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+    .++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence            44444444444444444444444444445544444443332  4445555555555554442211    12333333333


Q ss_pred             cccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc-CCCCCCEEEccCCcCC
Q 004005          459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC-ELNQLQLLDLSNNNLH  535 (779)
Q Consensus       459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~  535 (779)
                      |.+.+..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       109 N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            333222111    235566666666666655555566666666666666666655555443 4556666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.8e-26  Score=236.51  Aligned_cols=246  Identities=23%  Similarity=0.274  Sum_probs=155.6

Q ss_pred             CCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCC-CCcCcccc-------CCCCCcEEEccCCcccCCcCccc--
Q 004005          353 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL-GKIPRWLG-------NLTRLQYIIMPNNHLEGPIPVEF--  422 (779)
Q Consensus       353 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--  422 (779)
                      .++|+.|++++|.+  ..|..+...  |+.|++++|.+. ...+..+.       ++++|++|++++|++++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555555  333333322  555555555542 12233222       45666666666666665555544  


Q ss_pred             CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccC-----CCCccEEeccCccCCCccCccccCC
Q 004005          423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN-----CSSLVTLDLSYNRLNGSIPDWVDGL  497 (779)
Q Consensus       423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~~L~~L~L~~n~i~~~~~~~~~~l  497 (779)
                      ..+++|++|++++|++++. +..                        +..     +++|++|++++|++.+..+..+..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~------------------------~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAW------------------------LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSH------------------------HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             hcCCCccEEEccCCCCcch-hHH------------------------HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5666666666666666543 221                        222     2677777777777777666777777


Q ss_pred             CCCCEEEccCCccccc--ccccc--cCCCCCCEEEccCCcCCCCC--C-cccccCcccccccCCCCCCcchhhhhhcccc
Q 004005          498 SQLSHLILGHNNLEGE--VSVQL--CELNQLQLLDLSNNNLHGPI--P-PCFDNTTLHESYSNSSSPDEQFEIFFSIEGH  570 (779)
Q Consensus       498 ~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (779)
                      ++|+.|++++|++.+.  .+..+  ..+++|++|++++|.+++..  + ..+                            
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----------------------------  224 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA----------------------------  224 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH----------------------------
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH----------------------------
Confidence            7788888887776643  22233  67778888888888775211  0 000                            


Q ss_pred             cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc-ccccCCCCCCEEECcccccccCCCCCCCCCCCC
Q 004005          571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV  649 (779)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  649 (779)
                                               ..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+.  ++|
T Consensus       225 -------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L  276 (312)
T 1wwl_A          225 -------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL  276 (312)
T ss_dssp             -------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred             -------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence                                     112468888888888876654 44666788888888888888 5666655  788


Q ss_pred             CEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005          650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  685 (779)
Q Consensus       650 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  685 (779)
                      ++|++++|++++. |. +..+++|++|++++|++++
T Consensus       277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            8888888888865 55 7888888888888888874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.3e-25  Score=242.35  Aligned_cols=247  Identities=19%  Similarity=0.194  Sum_probs=203.5

Q ss_pred             CCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEE
Q 004005          400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL  479 (779)
Q Consensus       400 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  479 (779)
                      .+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ ...+++|+.|++++|.+.+. +     ..++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C-----CCCCcCEE
Confidence            34589999999999998888899999999999999999987665 55588999999999998642 2     33899999


Q ss_pred             eccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCc
Q 004005          480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDE  559 (779)
Q Consensus       480 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  559 (779)
                      ++++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..               
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------  166 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------  166 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------------
Confidence            9999999976554   4588999999999999888888999999999999999998766655531               


Q ss_pred             chhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCC
Q 004005          560 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI  639 (779)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  639 (779)
                                                           .+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++..
T Consensus       167 -------------------------------------~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          167 -------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             -------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC
T ss_pred             -------------------------------------hCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCC
Confidence                                                 134799999999999865 3 3446899999999999999755


Q ss_pred             CCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc-cCCCCccccccCCccccc-------CCCCCCCC
Q 004005          640 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG-EIPEWKAQFATFNESSYE-------GNTFLCGL  711 (779)
Q Consensus       640 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~~~~~~~~~~~-------~n~~~c~~  711 (779)
                      | .|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++| .+|.++..+..+..+...       ++++.|.|
T Consensus       208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~  285 (487)
T 3oja_A          208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV  285 (487)
T ss_dssp             G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred             H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence            5 58999999999999999995 67778999999999999999994 455555555555544443       67777766


Q ss_pred             C
Q 004005          712 P  712 (779)
Q Consensus       712 ~  712 (779)
                      +
T Consensus       286 ~  286 (487)
T 3oja_A          286 P  286 (487)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=3.1e-23  Score=230.85  Aligned_cols=269  Identities=25%  Similarity=0.283  Sum_probs=206.0

Q ss_pred             CCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEE
Q 004005          281 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ  360 (779)
Q Consensus       281 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  360 (779)
                      ..++.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|.    .+++|++|++++|.++++..    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            36899999999998 6677665  89999999999998 7776    47999999999999986443    679999999


Q ss_pred             ccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCcc
Q 004005          361 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG  440 (779)
Q Consensus       361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  440 (779)
                      +++|.+.+. |.   .+++|+.|++++|.++. +|..   +++|++|++++|.+++. |.   .+++|+.|++++|.+++
T Consensus       108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence            999999864 33   56899999999999985 4443   48999999999999853 32   35678888888888774


Q ss_pred             CCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccC
Q 004005          441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE  520 (779)
Q Consensus       441 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  520 (779)
                      ..                            ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. ++.   .
T Consensus       176 l~----------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~  219 (622)
T 3g06_A          176 LP----------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---L  219 (622)
T ss_dssp             CC----------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---C
T ss_pred             Cc----------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---C
Confidence            22                            124667777777777764 333   23677788888887773 332   2


Q ss_pred             CCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccC
Q 004005          521 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL  600 (779)
Q Consensus       521 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (779)
                      +++|+.|++++|.+++. |..                                                        +++
T Consensus       220 ~~~L~~L~Ls~N~L~~l-p~~--------------------------------------------------------l~~  242 (622)
T 3g06_A          220 PSGLKELIVSGNRLTSL-PVL--------------------------------------------------------PSE  242 (622)
T ss_dssp             CTTCCEEECCSSCCSCC-CCC--------------------------------------------------------CTT
T ss_pred             CCCCCEEEccCCccCcC-CCC--------------------------------------------------------CCc
Confidence            46788888888887642 211                                                        236


Q ss_pred             cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC
Q 004005          601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  671 (779)
Q Consensus       601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  671 (779)
                      |+.|++++|+++. +|.   .+++|+.|+|++|+++ .+|..|..+++|+.|+|++|++++..|..+..++
T Consensus       243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            8888888888884 555   5678899999999998 6677888899999999999999887777665443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.1e-23  Score=213.37  Aligned_cols=210  Identities=25%  Similarity=0.301  Sum_probs=149.2

Q ss_pred             CCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEec
Q 004005          402 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL  481 (779)
Q Consensus       402 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  481 (779)
                      +++++|++++|.+++..+..+.++++|++|++++|++.+.                        +...|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L   83 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLIL   83 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEEC
Confidence            3455666666655554444555666666666666655422                        2223566677777777


Q ss_pred             cCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC-CCcccccCcccccccCCCCCCcc
Q 004005          482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQ  560 (779)
Q Consensus       482 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~  560 (779)
                      ++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..++              
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~--------------  149 (276)
T 2z62_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------  149 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--------------
T ss_pred             CCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC--------------
Confidence            77777766666677777777777777777766555677777777777777777653 355554433              


Q ss_pred             hhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCC----EEECcccccc
Q 004005          561 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ----TLNLSHNNLT  636 (779)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~  636 (779)
                                                             +|++|++++|++++..+..+..+++|+    +|++++|+++
T Consensus       150 ---------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          150 ---------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             ---------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred             ---------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence                                                   688888888888776666776666666    8999999998


Q ss_pred             cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       637 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      +..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|+++|.||.
T Consensus       191 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          191 FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            766665554 4899999999999977777788999999999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.7e-25  Score=229.13  Aligned_cols=133  Identities=23%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             ccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCc-cCcccCC-------CCCCCCEEEccCCcCCccCCc
Q 004005          301 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNF-------NLTNLQWLQLEGNRFVGEIPQ  372 (779)
Q Consensus       301 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~  372 (779)
                      ++..++|+.+++++|.+  .+|..+...   |+.|++++|.+.. ..+..+.       ++++|++|++++|++.+..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            45567788888888888  677666542   7777888887743 2222222       577888888888888877776


Q ss_pred             cc--cCCCCCCEEEccCCCCCCCcCccccCC-----CCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005          373 SL--SKCSSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       373 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  439 (779)
                      .+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            55  7778888888888887765 6555554     66777777777666655566666666666666666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.7e-23  Score=208.35  Aligned_cols=208  Identities=24%  Similarity=0.284  Sum_probs=180.1

Q ss_pred             CCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEc
Q 004005          426 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLIL  505 (779)
Q Consensus       426 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  505 (779)
                      ...+.+++++++++.++...  +.+++.|++++|.+.+ ++...|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35789999999998644332  3689999999999864 55555899999999999999999777777889999999999


Q ss_pred             cCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeee
Q 004005          506 GHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFT  585 (779)
Q Consensus       506 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (779)
                      ++|++++..+..+..+++|++|++++|.+++..+..|..++                                       
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------  133 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---------------------------------------  133 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------------------
Confidence            99999987777889999999999999999887777665543                                       


Q ss_pred             eccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcc
Q 004005          586 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH  665 (779)
Q Consensus       586 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  665 (779)
                                    +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus       134 --------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          134 --------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             --------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             --------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence                          799999999999977667789999999999999999988888899999999999999999977777


Q ss_pred             cccCCCCCcEEeccCCcCcccCCC
Q 004005          666 QLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       666 ~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      .|..+++|+.|++++|++.|.++.
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCcc
Confidence            888999999999999999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.5e-27  Score=270.58  Aligned_cols=84  Identities=12%  Similarity=0.046  Sum_probs=44.7

Q ss_pred             cCcceEEccCCcccccCcccc-cCCCCCCEEECcccccccCCCC-CCCCCCCCCEEECCCCcCCCCCcccc-cCCCCCcE
Q 004005          599 SLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEV  675 (779)
Q Consensus       599 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~  675 (779)
                      ++|+.|++++|++++..+..+ .++++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.++.
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i  535 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV  535 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence            356666666666654433333 4566666666666666432222 23345666666666666643222223 33555555


Q ss_pred             EeccCCc
Q 004005          676 FSVAYNN  682 (779)
Q Consensus       676 L~l~~N~  682 (779)
                      ..+..+.
T Consensus       536 ~~~~~~~  542 (594)
T 2p1m_B          536 EVIDERG  542 (594)
T ss_dssp             EEECSSS
T ss_pred             EEecCCC
Confidence            5554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6e-23  Score=206.83  Aligned_cols=206  Identities=23%  Similarity=0.252  Sum_probs=148.0

Q ss_pred             cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005          450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  529 (779)
Q Consensus       450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  529 (779)
                      ..+.++++++.++ .+|.. +  .++++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4567777777764 34543 2  256777778777777666667777777888888777777665666677777788888


Q ss_pred             cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005          530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  609 (779)
Q Consensus       530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  609 (779)
                      ++|.+++..+..|..++                                                     +|++|++++|
T Consensus        93 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n  119 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLV-----------------------------------------------------NLAELRLDRN  119 (270)
T ss_dssp             CSSCCCCCCTTTTTTCS-----------------------------------------------------SCCEEECCSS
T ss_pred             CCCcCCcCCHhHccccc-----------------------------------------------------CCCEEECCCC
Confidence            77777765555554433                                                     6777778777


Q ss_pred             cccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       610 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      ++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+++...+.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            77766666677777788888888777766666677777788888887777766666677777778888887777766655


Q ss_pred             CccccccCCcccccCCCCCCCCC
Q 004005          690 WKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       690 ~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      .+..+..+..+.+.+|||.|+|+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCc
Confidence            56667777777777787777775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.7e-23  Score=210.44  Aligned_cols=208  Identities=26%  Similarity=0.287  Sum_probs=177.0

Q ss_pred             cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005          450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  529 (779)
Q Consensus       450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  529 (779)
                      +++.|++++|.+.+ ++...|.++++|++|++++|.+++..+..+.++++|+.|++++|++++..+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45555555555533 33334888999999999999999888888999999999999999999888888999999999999


Q ss_pred             cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005          530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  609 (779)
Q Consensus       530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  609 (779)
                      ++|.+.+..+..+..+                                                     ++|++|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n  134 (276)
T 2z62_A          108 VETNLASLENFPIGHL-----------------------------------------------------KTLKELNVAHN  134 (276)
T ss_dssp             TTSCCCCSTTCCCTTC-----------------------------------------------------TTCCEEECCSS
T ss_pred             CCCCccccCchhcccC-----------------------------------------------------CCCCEEECcCC
Confidence            9999987666555443                                                     37999999999


Q ss_pred             ccccc-CcccccCCCCCCEEECcccccccCCCCCCCCCCCCC----EEECCCCcCCCCCcccccCCCCCcEEeccCCcCc
Q 004005          610 KLIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  684 (779)
Q Consensus       610 ~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  684 (779)
                      ++.+. +|..+..+++|++|++++|++++..+..|..+++|+    +|++++|++.+..+..+.. .+|+.|++++|.++
T Consensus       135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~  213 (276)
T 2z62_A          135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK  213 (276)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred             ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence            99864 588999999999999999999988888888888777    9999999999766655544 58999999999999


Q ss_pred             ccCCCCccccccCCcccccCCCCCCCCC
Q 004005          685 GEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       685 ~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      +..+..+..+.++..+.+.+|++.|+|+
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCC
Confidence            8777777889999999999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.9e-22  Score=204.77  Aligned_cols=206  Identities=24%  Similarity=0.263  Sum_probs=160.9

Q ss_pred             CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005          423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH  502 (779)
Q Consensus       423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  502 (779)
                      .+++++++++++++.++..++..  +++++.|++++|.+.+..+ ..|..+++|++|++++|.+++..+.  ..+++|+.
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            34455555555555554333222  2455555555555543333 3488889999999999999865442  67899999


Q ss_pred             EEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccccee
Q 004005          503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIF  582 (779)
Q Consensus       503 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (779)
                      |++++|+++ .+|..+..+++|++|++++|++++..+..|..++                                    
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~------------------------------------  124 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------------------------------------  124 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC------------------------------------
Confidence            999999998 5667788899999999999999877777776644                                    


Q ss_pred             eeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCC
Q 004005          583 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK  662 (779)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  662 (779)
                                       +|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus       125 -----------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          125 -----------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             -----------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             -----------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence                             7999999999999777777899999999999999999777778899999999999999998 6


Q ss_pred             CcccccCCCCCcEEeccCCcCcccCC
Q 004005          663 IPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       663 ~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      +|..+....+|+.+++++|++.|.|.
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cChhhcccccCCeEEeCCCCccCcCc
Confidence            77778888899999999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.4e-22  Score=205.59  Aligned_cols=205  Identities=26%  Similarity=0.250  Sum_probs=178.7

Q ss_pred             cccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEE
Q 004005          448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL  527 (779)
Q Consensus       448 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  527 (779)
                      .+++++++++++.++ .+|.. +  .++++.|++++|.+++..+..|..+++|+.|++++|.+++..+.  ..+++|+.|
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             cCCccEEECCCCCCC-cCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            568999999999985 56655 3  26899999999999988888999999999999999999865443  789999999


Q ss_pred             EccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEcc
Q 004005          528 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS  607 (779)
Q Consensus       528 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  607 (779)
                      ++++|.++ .+|..+..                                                     +++|++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~-----------------------------------------------------l~~L~~L~l~  108 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQT-----------------------------------------------------LPALTVLDVS  108 (290)
T ss_dssp             ECCSSCCS-SCCCCTTT-----------------------------------------------------CTTCCEEECC
T ss_pred             ECCCCcCC-cCchhhcc-----------------------------------------------------CCCCCEEECC
Confidence            99999987 34444433                                                     3479999999


Q ss_pred             CCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccC
Q 004005          608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  687 (779)
Q Consensus       608 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  687 (779)
                      +|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|++|++++|+++ .+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence            99999877788999999999999999999888888999999999999999999777777899999999999999999 66


Q ss_pred             CCCccccccCCcccccCCCCCCCCCC
Q 004005          688 PEWKAQFATFNESSYEGNTFLCGLPL  713 (779)
Q Consensus       688 p~~~~~~~~~~~~~~~~n~~~c~~~l  713 (779)
                      |..+.....+..+.+.+|||.|+|..
T Consensus       188 p~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ChhhcccccCCeEEeCCCCccCcCcc
Confidence            77677778889999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.6e-22  Score=200.49  Aligned_cols=209  Identities=23%  Similarity=0.285  Sum_probs=163.1

Q ss_pred             ccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCcc
Q 004005          398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV  477 (779)
Q Consensus       398 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  477 (779)
                      ...+++|+.|++++|.+...  ..+..+++|++|++++|.+.+                        ++  .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~------------------------~~--~l~~l~~L~   88 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD------------------------IS--ALKELTNLT   88 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC------------------------CG--GGTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC------------------------ch--hhcCCCCCC
Confidence            34556667777776666532  235566666666666665542                        11  267788899


Q ss_pred             EEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCC
Q 004005          478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSP  557 (779)
Q Consensus       478 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~  557 (779)
                      +|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..++           
T Consensus        89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------  157 (272)
T 3rfs_A           89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----------  157 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------
T ss_pred             EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------
Confidence            999999998877777788889999999999999877777788889999999999988876666555443           


Q ss_pred             CcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccccc
Q 004005          558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  637 (779)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  637 (779)
                                                                +|++|++++|++++..+..+..+++|++|++++|++++
T Consensus       158 ------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          158 ------------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             ------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ------------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence                                                      78999999999987777778889999999999999998


Q ss_pred             CCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcccc
Q 004005          638 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF  694 (779)
Q Consensus       638 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  694 (779)
                      ..+..|..+++|++|++++|++.+.       +++|+.+++..|.++|.+|.+++.+
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            8888889999999999999988754       4578888999999999988865444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.8e-21  Score=193.72  Aligned_cols=181  Identities=25%  Similarity=0.276  Sum_probs=152.1

Q ss_pred             ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 004005          451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  530 (779)
Q Consensus       451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  530 (779)
                      .+.++++++.+. .+|.. +.  +.++.|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            344455544442 34433 22  578899999999988888888999999999999999998888888999999999999


Q ss_pred             CCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCc
Q 004005          531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  610 (779)
Q Consensus       531 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  610 (779)
                      +|.+++..+..|..++                                                     +|++|++++|+
T Consensus        92 ~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~  118 (251)
T 3m19_A           92 NNQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGNQ  118 (251)
T ss_dssp             TSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcccccChhHhcccC-----------------------------------------------------CCCEEEcCCCc
Confidence            9999877766665543                                                     79999999999


Q ss_pred             ccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005          611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       611 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      +++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+++|.+.
T Consensus       119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            997777778999999999999999998888889999999999999999998888889999999999999999998744

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=8.3e-21  Score=191.26  Aligned_cols=165  Identities=25%  Similarity=0.264  Sum_probs=149.6

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++   
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---  133 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---  133 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC---
Confidence            67789999999999999863  4688999999999999999988888889999999999999999987777666544   


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                        +|++|++++|++++..+..+..+++|++|+
T Consensus       134 --------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A          134 --------------------------------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------CCCEEECCCCccCccCHHHhccCccCCEEE
Confidence                                                              799999999999987777789999999999


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      +++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|+++|.+|.
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            999999988888899999999999999999988888899999999999999999999885

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.2e-20  Score=187.71  Aligned_cols=181  Identities=23%  Similarity=0.292  Sum_probs=164.1

Q ss_pred             CCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccC
Q 004005          474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN  553 (779)
Q Consensus       474 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  553 (779)
                      ...+.++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..++       
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence            45789999999998 4565554  6899999999999988888899999999999999999988777776544       


Q ss_pred             CCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccc
Q 004005          554 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  633 (779)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  633 (779)
                                                                    +|++|++++|++++..+..|..+++|++|+|++|
T Consensus        84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence                                                          7999999999999887788999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCC
Q 004005          634 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG  710 (779)
Q Consensus       634 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~  710 (779)
                      ++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+.++..+.+.+|++.|+
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99988888899999999999999999988777899999999999999999988887888899999999999999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.2e-20  Score=186.25  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             Ccc-eEEccCCcccccCcccccCCCCCCEEECcccc-cccCCCCCCCCC-CCCCEEECCCCcCCCCCcccccCCCCCcEE
Q 004005          600 LLS-GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLEVF  676 (779)
Q Consensus       600 ~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  676 (779)
                      +|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|++|++++|++++..+.   .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCcee
Confidence            455 5555555555322233333 555566666653 554555555555 5666666666666532222   34555555


Q ss_pred             eccCC
Q 004005          677 SVAYN  681 (779)
Q Consensus       677 ~l~~N  681 (779)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            55544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.9e-21  Score=198.82  Aligned_cols=209  Identities=22%  Similarity=0.261  Sum_probs=127.7

Q ss_pred             CCCcEEEccCCcccCCcCccc--CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEE
Q 004005          402 TRLQYIIMPNNHLEGPIPVEF--CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL  479 (779)
Q Consensus       402 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  479 (779)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.                    ++...+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------------------~~~~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------------------LAELQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------------------HHHHHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------------------hHHHHhhhccCCCEE
Confidence            445555665555555555554  5566666666666655532211                    011113456677777


Q ss_pred             eccCccCCCccCccccCCCCCCEEEccCCccccc--c--cccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005          480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE--V--SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  555 (779)
Q Consensus       480 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      ++++|++.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|.++...+... ..          
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~l----------  219 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA-AL----------  219 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-HH----------
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-HH----------
Confidence            7777777766666777777777777777776532  1  1223566777777777777642111000 00          


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCC---CCCCEEECcc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL---TRIQTLNLSH  632 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~Ls~  632 (779)
                                                             ...+++|++||+++|++++..|..+..+   ++|++|+|++
T Consensus       220 ---------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          220 ---------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             ---------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             ---------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                                                   0112467777888887776666666555   5788888888


Q ss_pred             cccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005          633 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  685 (779)
Q Consensus       633 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  685 (779)
                      |+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8887 4565553  6788888888888754 33 5677888888888888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=5e-22  Score=209.32  Aligned_cols=260  Identities=18%  Similarity=0.160  Sum_probs=141.7

Q ss_pred             EEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcC----ccccCCC-CCcEEEccCCcccCCcCcccCCC-----CC
Q 004005          358 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP----RWLGNLT-RLQYIIMPNNHLEGPIPVEFCQL-----DS  427 (779)
Q Consensus       358 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~  427 (779)
                      .++++.|.+.+..|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677777777766666556668888888888776555    5667777 78888888888776655555443     77


Q ss_pred             CcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCC-CCccEEeccCccCCCccCccc----cC-CCCCC
Q 004005          428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC-SSLVTLDLSYNRLNGSIPDWV----DG-LSQLS  501 (779)
Q Consensus       428 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~  501 (779)
                      |++|++++|.+++..+..+.                    ..+..+ ++|++|++++|.+++..+..+    .. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~--------------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELV--------------------KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHH--------------------HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHH--------------------HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            78888887777654332111                    012223 455555555555554333322    22 23566


Q ss_pred             EEEccCCcccccc----cccccCCC-CCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccc
Q 004005          502 HLILGHNNLEGEV----SVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK  576 (779)
Q Consensus       502 ~L~L~~n~l~~~~----~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (779)
                      +|++++|.+++..    +..+..++ +|++|++++|.+++..+..++..-                              
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------  191 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------  191 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------
Confidence            6666666555322    22233333 566666666655443332221100                              


Q ss_pred             cccceeeeeeccceeeeccccc-cCcceEEccCCccccc----CcccccC-CCCCCEEECcccccccCCC----CCCCCC
Q 004005          577 QNHEIFEFTTKNIAYIYQGKVL-SLLSGLDLSCNKLIGH----IPPQIGN-LTRIQTLNLSHNNLTGSIP----STFSNL  646 (779)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l  646 (779)
                                         ... ++|++|||++|++++.    ++..+.. .++|++|+|++|++++..+    ..+..+
T Consensus       192 -------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          192 -------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             -------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             -------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence                               001 2456666666665542    2333333 2356666666666654322    234555


Q ss_pred             CCCCEEECCCCcCCCCCc-------ccccCCCCCcEEeccCCcCccc
Q 004005          647 KHVESLDLSNNKLNGKIP-------HQLVELKTLEVFSVAYNNLSGE  686 (779)
Q Consensus       647 ~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~  686 (779)
                      ++|++|++++|++....+       ..+..+++|+.||+++|++...
T Consensus       253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            666666666666433222       2344555666666666666544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=5.4e-20  Score=181.62  Aligned_cols=196  Identities=21%  Similarity=0.202  Sum_probs=111.6

Q ss_pred             CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcc-cCccCcccCCCCCCCCEEEccC-CcCCccCCccccCCCCCCEE
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN-LQGHLFSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGL  383 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  383 (779)
                      +|++|++++|.++ .++...+.++++|++|++++|+ ++.+.+..|.++++|++|++++ |.+....+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4555555555554 3443333445555555555554 4444444555555666666655 55555444555566666666


Q ss_pred             EccCCCCCCCcCccccCCCCCc---EEEccCC-cccCCcCcccCCCCCCc-EEEccCCcCccCCCCccCcccccEEEccC
Q 004005          384 YLNNNSLLGKIPRWLGNLTRLQ---YIIMPNN-HLEGPIPVEFCQLDSLQ-ILDISDNNISGSLPSCFHPLSIKQVHLSK  458 (779)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  458 (779)
                      ++++|.+.+ +|. +..+++|+   +|++++| .+.+..+..|.++++|+ +|++++|+++.                  
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------------------  170 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------------------  170 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------------------
Confidence            666666553 333 55555555   6666666 55555445566666666 66666665553                  


Q ss_pred             cccccccCcccccCCCCccEEeccCcc-CCCccCccccCC-CCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 004005          459 NMLHGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPDWVDGL-SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  532 (779)
Q Consensus       459 n~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  532 (779)
                            ++..+|.. ++|+.|++++|+ +++..+..|.++ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       171 ------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          171 ------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             ------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             ------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence                  33333444 566777777773 665555666666 7777777777777643332   4567777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=193.77  Aligned_cols=56  Identities=30%  Similarity=0.494  Sum_probs=38.6

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  660 (779)
                      +|++|++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            5677777777776 4555553  6777777777777744 33 567777778888887775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.3e-21  Score=208.40  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=65.6

Q ss_pred             ccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC---CCCcchhh-------cCCCCCCEEEc
Q 004005           43 SFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL---RGSLPWCM-------ANMTSLRILDV  112 (779)
Q Consensus        43 ~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l---~~~~~~~~-------~~l~~L~~L~L  112 (779)
                      .++..+. .+++|++|+|++|.+++.....++..+..+++|++|+|++|.+   .+.+|..+       ..+++|++|++
T Consensus        23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3455666 7788888888888875444444556677788888888887643   33444444       57777777777


Q ss_pred             CCCcccC----CCCcccccCCCCCCEEEccCcccc
Q 004005          113 SSNQLTG----SISSSPLVHLTSIEELMLSNNYFQ  143 (779)
Q Consensus       113 ~~n~l~~----~l~~~~l~~l~~L~~L~l~~n~~~  143 (779)
                      ++|.+.+    .++. .+.++++|++|++++|.++
T Consensus       102 s~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          102 SDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             CSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCH
T ss_pred             CCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCC
Confidence            7777764    2444 5666777777777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=8.2e-22  Score=207.65  Aligned_cols=107  Identities=20%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             EEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCc----ccCCCCC-CCCEEEccCCcCCccCCccccCC-----C
Q 004005          309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF----SRNFNLT-NLQWLQLEGNRFVGEIPQSLSKC-----S  378 (779)
Q Consensus       309 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~  378 (779)
                      .++++.|.+.+.+|... ...++|++|++++|.+.+...    ..+..++ +|++|++++|.+.+..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            34566676665444433 334457777777777665554    4455565 66666666666665544444432     5


Q ss_pred             CCCEEEccCCCCCCCcCcc----ccCC-CCCcEEEccCCcccC
Q 004005          379 SLEGLYLNNNSLLGKIPRW----LGNL-TRLQYIIMPNNHLEG  416 (779)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~  416 (779)
                      +|++|++++|.+.+..+..    +..+ ++|++|++++|.+++
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            6666666666555433332    2222 455555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.9e-22  Score=214.98  Aligned_cols=166  Identities=18%  Similarity=0.222  Sum_probs=108.2

Q ss_pred             ccCCCCccEEeccCccCCCccCccc----cCC---------CCCCEEEccCCcccc-ccc---ccccCCCCCCEEEccCC
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWV----DGL---------SQLSHLILGHNNLEG-EVS---VQLCELNQLQLLDLSNN  532 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~----~~l---------~~L~~L~L~~n~l~~-~~~---~~l~~l~~L~~L~l~~n  532 (779)
                      +..+++|++|++++|.+....+..+    ..+         ++|++|++++|+++. ..+   ..+..+++|++|++++|
T Consensus       118 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4455666666666666543322222    222         677777777777752 222   34556777777777777


Q ss_pred             cCCCC-----CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEcc
Q 004005          533 NLHGP-----IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS  607 (779)
Q Consensus       533 ~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  607 (779)
                      .++..     .+..+.                                                     .+++|++|+|+
T Consensus       198 ~l~~~g~~~l~~~~l~-----------------------------------------------------~~~~L~~L~Ls  224 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLA-----------------------------------------------------YCQELKVLDLQ  224 (386)
T ss_dssp             CCCHHHHHHHHHTTGG-----------------------------------------------------GCTTCCEEECC
T ss_pred             CCCHhHHHHHHHHHhh-----------------------------------------------------cCCCccEEECc
Confidence            66410     111111                                                     13467888888


Q ss_pred             CCccc----ccCcccccCCCCCCEEECcccccccC----CCCCC--CCCCCCCEEECCCCcCCC----CCcccc-cCCCC
Q 004005          608 CNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGS----IPSTF--SNLKHVESLDLSNNKLNG----KIPHQL-VELKT  672 (779)
Q Consensus       608 ~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~  672 (779)
                      +|.++    ..+|..+..+++|++|+|++|++++.    ++..+  ..+++|++|+|++|+++.    .+|..+ ..+++
T Consensus       225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~  304 (386)
T 2ca6_A          225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  304 (386)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence            88875    45677778888888888888888754    34555  337888888888888886    366666 55788


Q ss_pred             CcEEeccCCcCcccCC
Q 004005          673 LEVFSVAYNNLSGEIP  688 (779)
Q Consensus       673 L~~L~l~~N~l~~~~p  688 (779)
                      |++|++++|++++..+
T Consensus       305 L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          305 LLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTSBSCTTSH
T ss_pred             ceEEEccCCcCCcchh
Confidence            8999999998887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.5e-21  Score=204.03  Aligned_cols=252  Identities=18%  Similarity=0.183  Sum_probs=137.6

Q ss_pred             CCEEEccCCcCCccCCccccCC--CCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCC-cCcccCCCCCCcEEE
Q 004005          356 LQWLQLEGNRFVGEIPQSLSKC--SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILD  432 (779)
Q Consensus       356 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~  432 (779)
                      ++.++++++.+.   +..+..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            444555544433   2223333  4555555555555443333 33455555555555555433 444455555555555


Q ss_pred             ccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCc-cCCCc-cCccccCCCCCCEEEccCC-c
Q 004005          433 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNGS-IPDWVDGLSQLSHLILGHN-N  509 (779)
Q Consensus       433 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~  509 (779)
                      +++|.+++                       ..+.. +..+++|++|++++| .+++. .+..+..+++|++|++++| .
T Consensus       125 L~~~~l~~-----------------------~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          125 LEGLRLSD-----------------------PIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             CTTCBCCH-----------------------HHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             CcCcccCH-----------------------HHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence            55554432                       11111 444566666666666 44431 3444555666666666666 6


Q ss_pred             cccc-ccccccCCC-CCCEEEccCCc--CC-CCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeee
Q 004005          510 LEGE-VSVQLCELN-QLQLLDLSNNN--LH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF  584 (779)
Q Consensus       510 l~~~-~~~~l~~l~-~L~~L~l~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (779)
                      +++. .+..+..++ +|++|++++|.  ++ +.++..+                                          
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------------------------------------------  218 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV------------------------------------------  218 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH------------------------------------------
T ss_pred             cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH------------------------------------------
Confidence            6543 344455666 67777776663  22 1111111                                          


Q ss_pred             eeccceeeeccccccCcceEEccCCc-ccccCcccccCCCCCCEEECcccc-cccCCCCCCCCCCCCCEEECCCCcCCCC
Q 004005          585 TTKNIAYIYQGKVLSLLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGK  662 (779)
Q Consensus       585 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~  662 (779)
                                 ..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +...
T Consensus       219 -----------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          219 -----------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             -----------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             -----------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence                       113467777777777 555666677777888888888885 22221225677888888888888 4322


Q ss_pred             CcccccCC-CCCcEEeccCCcCcccCCCCcc
Q 004005          663 IPHQLVEL-KTLEVFSVAYNNLSGEIPEWKA  692 (779)
Q Consensus       663 ~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~  692 (779)
                         .+..+ .+++.|++++|++++..|.+..
T Consensus       287 ---~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          287 ---TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             ---HHHHHHhhCcceEEecccCccccCCccc
Confidence               23333 2355666888888888776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.2e-19  Score=186.03  Aligned_cols=195  Identities=22%  Similarity=0.337  Sum_probs=143.9

Q ss_pred             cCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccE
Q 004005          399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  478 (779)
Q Consensus       399 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  478 (779)
                      ..+++|++|++++|.+... + .+..+++|++|++++|.+.+.                        +.  +..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~~--~~~l~~L~~   89 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------AP--LKNLTKITE   89 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------GG--GTTCCSCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------hh--HccCCCCCE
Confidence            3456677777777766642 2 456666677777766665532                        22  667788888


Q ss_pred             EeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCC
Q 004005          479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD  558 (779)
Q Consensus       479 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  558 (779)
                      |++++|.+++.  ..+..+++|+.|++++|++++..  .+..+++|+.|++++|.+++..+  +..              
T Consensus        90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~--------------  149 (308)
T 1h6u_A           90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG--------------  149 (308)
T ss_dssp             EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------------
T ss_pred             EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC--------------
Confidence            88888888753  35778888888888888887543  37888888888888888765432  222              


Q ss_pred             cchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccC
Q 004005          559 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS  638 (779)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  638 (779)
                                                             +++|++|++++|++++. +. +..+++|++|++++|++++.
T Consensus       150 ---------------------------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          150 ---------------------------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred             ---------------------------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence                                                   34788899999988853 33 88889999999999999865


Q ss_pred             CCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCccc
Q 004005          639 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  686 (779)
Q Consensus       639 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  686 (779)
                      .+  +..+++|++|++++|++.+..+  +..+++|+.|++++|++++.
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            43  7888999999999999986543  78889999999999998853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=4.3e-20  Score=179.09  Aligned_cols=196  Identities=21%  Similarity=0.274  Sum_probs=153.6

Q ss_pred             cEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCC
Q 004005          477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS  556 (779)
Q Consensus       477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  556 (779)
                      +.+++++++++. +|..+.  ++++.|++++|++++..+..|..+++|+.|++++|.+++..|..|..++          
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~----------   80 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------   80 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence            567888888874 454443  6788999999998877777888889999999999998877777776544          


Q ss_pred             CCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccc
Q 004005          557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT  636 (779)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  636 (779)
                                                                 +|++|+|++|+++...+..|.++++|++|+|++|+++
T Consensus        81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                       7999999999999766667899999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCC
Q 004005          637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC  716 (779)
Q Consensus       637 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c  716 (779)
                      +..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|.|+-  .++..+    +..++..-  ....|
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l--~~l~~~----l~~~~~~~--~~~~C  189 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL--KWLADY----LHTNPIET--SGARC  189 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG--HHHHHH----HHHCCCBC--SCCBE
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc--HHHHHH----HHhCCCCc--cCCCc
Confidence            88899999999999999999999988888899999999999999999988763  222221    11122111  11248


Q ss_pred             CCCCCCCCCCCCCCCCCCcc
Q 004005          717 RSPATMPEASIGNEQDDNLI  736 (779)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~  736 (779)
                      ..|....++.+.+...+++.
T Consensus       190 ~~P~~l~g~~l~~l~~~~~~  209 (220)
T 2v9t_B          190 TSPRRLANKRIGQIKSKKFR  209 (220)
T ss_dssp             EESGGGTTCBGGGSCGGGCC
T ss_pred             CCchHHcCCchhhCCHHHCc
Confidence            88888888777666655553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.9e-21  Score=203.32  Aligned_cols=126  Identities=18%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             CCCEEEccCCcCccccchhhhhCC--CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCcc-CCccccCCCCCCE
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGC--VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE-IPQSLSKCSSLEG  382 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  382 (779)
                      .++.++++++.+..   .. +..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~---~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHP---DV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCH---HH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCH---HH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            35677777766541   11 1223  5666677766666654433 33456666666666665533 4444555566666


Q ss_pred             EEccCCCCCCCcCccccCCCCCcEEEccCC-cccCC-cCcccCCCCCCcEEEccCC
Q 004005          383 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNN-HLEGP-IPVEFCQLDSLQILDISDN  436 (779)
Q Consensus       383 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n  436 (779)
                      |++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            666665555444444445555555555555 33321 2223334444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=4.7e-20  Score=178.82  Aligned_cols=193  Identities=23%  Similarity=0.302  Sum_probs=152.1

Q ss_pred             cEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005          477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  555 (779)
Q Consensus       477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      +.+++++|.++. +|..+.  +.++.|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..++         
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~---------   81 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS---------   81 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence            578888888884 555443  457899999999987644 4578899999999999999877766666544         


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  635 (779)
                                                                  +|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                                                        799999999999988888899999999999999999


Q ss_pred             ccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCc-c-cccCCCCCCCCCC
Q 004005          636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE-S-SYEGNTFLCGLPL  713 (779)
Q Consensus       636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~-~-~~~~n~~~c~~~l  713 (779)
                      ++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|.|+.  ..+..+.. . ...++        
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l--~~l~~~~~~~~~~~~~--------  187 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL--AWLGEWLRKKRIVTGN--------  187 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG--HHHHHHHHHSCCBCCC--------
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch--HHHHHHHHhcCccccC--------
Confidence            999899999999999999999999999899999999999999999999998873  22222111 0 11222        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCc
Q 004005          714 PICRSPATMPEASIGNEQDDNL  735 (779)
Q Consensus       714 ~~c~~~~~~~~~~~~~~~~~~~  735 (779)
                      +.|..|....+..+.+.....+
T Consensus       188 ~~C~~P~~l~g~~l~~l~~~~~  209 (220)
T 2v70_A          188 PRCQKPYFLKEIPIQDVAIQDF  209 (220)
T ss_dssp             CEEEESGGGTTEEGGGSCGGGC
T ss_pred             CccCCChHHCCCChhhCCHHHc
Confidence            2477787777766655544433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.2e-19  Score=185.95  Aligned_cols=148  Identities=24%  Similarity=0.381  Sum_probs=82.5

Q ss_pred             CCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEE
Q 004005          352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL  431 (779)
Q Consensus       352 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  431 (779)
                      .+++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            456667777777666532 2 45666666666666666654333  55666666666666665532  235555555555


Q ss_pred             EccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccc
Q 004005          432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE  511 (779)
Q Consensus       432 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  511 (779)
                      ++++|++.+.                        +.  +..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       113 ~l~~n~l~~~------------------------~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          113 DLTSTQITDV------------------------TP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ECTTSCCCCC------------------------GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCc------------------------hh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            5555544421                        11  4455666666666666654332  555566666666666665


Q ss_pred             ccccccccCCCCCCEEEccCCcCC
Q 004005          512 GEVSVQLCELNQLQLLDLSNNNLH  535 (779)
Q Consensus       512 ~~~~~~l~~l~~L~~L~l~~n~l~  535 (779)
                      +..+  +..+++|+.|++++|.++
T Consensus       165 ~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          165 DLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CChh--hcCCCCCCEEECCCCccC
Confidence            4322  555555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=4.2e-19  Score=185.83  Aligned_cols=243  Identities=16%  Similarity=0.149  Sum_probs=143.4

Q ss_pred             CEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEcc
Q 004005          259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS  338 (779)
Q Consensus       259 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~  338 (779)
                      ++++.++++++ .+|..+.   +++++|++++|+++...+.+|.++++|++|+|++|.+.+.++...+.+++++.++   
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~---   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI---   84 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE---
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh---
Confidence            35566666665 5554432   3555555555555543334455555555555555555434444444444444332   


Q ss_pred             CcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccC-CcccCC
Q 004005          339 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGP  417 (779)
Q Consensus       339 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~  417 (779)
                                          +.+.+|++....+.+|..+++|++|++++|.+....+..+....++..+++.+ +.+...
T Consensus        85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence                                33334444444444455555555555555555444333444444555555543 344433


Q ss_pred             cCcccCCCC-CCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccC
Q 004005          418 IPVEFCQLD-SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG  496 (779)
Q Consensus       418 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  496 (779)
                      .+..|..+. .++.|++++|+++.+.+..+...+++++++.++...+.++..+|.++++|++|++++|+++...+..+  
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--  222 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--  222 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence            334454443 56777777777777667777777788888876555577888889999999999999999996555444  


Q ss_pred             CCCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 004005          497 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  532 (779)
Q Consensus       497 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  532 (779)
                       .+|+.|.+.++.-....| .+..+++|+.+++.++
T Consensus       223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence             456666655544333455 4788999999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.1e-18  Score=182.74  Aligned_cols=203  Identities=24%  Similarity=0.242  Sum_probs=125.2

Q ss_pred             CEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccC-CccccCCCCCCE-EEc
Q 004005          308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSLEG-LYL  385 (779)
Q Consensus       308 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l  385 (779)
                      ++++.+++.++ ++|..+   .+++++|++++|+++.+.+.+|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46677777777 677654   356778888888877766677777888888888888775543 346777777665 445


Q ss_pred             cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC-cCccCCCCccCcccccEEEccCcccccc
Q 004005          386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN-NISGSLPSCFHPLSIKQVHLSKNMLHGQ  464 (779)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~n~~~~~  464 (779)
                      ..|++....+..|..+++|++|++++|++....+..+....++..+++.++ ++.                        .
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence            557776666667777777777777777776555555555555666666442 333                        2


Q ss_pred             cCcccccCC-CCccEEeccCccCCCccCccccCCCCCCEEEccC-CcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005          465 LKRGTFFNC-SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  539 (779)
Q Consensus       465 ~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  539 (779)
                      ++...|..+ ..++.|++++|+|+.+.+..|. ..+|+.+++.+ |.++...+..|..+++|+.|++++|+++...+
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            333334443 2466666666666644444333 34566666653 45554444456666666666666666654433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=9.8e-19  Score=168.48  Aligned_cols=162  Identities=26%  Similarity=0.289  Sum_probs=134.3

Q ss_pred             CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005          473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  552 (779)
Q Consensus       473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  552 (779)
                      .+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..++      
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence            35788899999988877777788888999999999988877676778889999999999988876665555433      


Q ss_pred             CCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc
Q 004005          553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  632 (779)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  632 (779)
                                                                     +|++|++++|++++..+..|..+++|++|++++
T Consensus       101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                           789999999999877777788999999999999


Q ss_pred             cccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcccc
Q 004005          633 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF  694 (779)
Q Consensus       633 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  694 (779)
                      |++++..+..|..+++|++|++++|++.+       .+++|++|+++.|.+++.+|.+++.+
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            99997777778999999999999998874       34678999999999999999865544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.1e-19  Score=187.58  Aligned_cols=180  Identities=27%  Similarity=0.293  Sum_probs=130.2

Q ss_pred             cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcccc-CCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 004005          452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD-GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  530 (779)
Q Consensus       452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  530 (779)
                      +.++++++.+. .+|.. +  .+.++.|+|++|.+++..+..+. ++++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56777777764 35544 2  24577888888888877777776 78888888888888887777778888888888888


Q ss_pred             CCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCc
Q 004005          531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  610 (779)
Q Consensus       531 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  610 (779)
                      +|++++..+..|..+.                                                     +|++|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence            8887765555554433                                                     67888888888


Q ss_pred             ccccCcccccCCCCCCEEECcccccccCCCCCC---CCCCCCCEEECCCCcCCCCCcccccCCCC--CcEEeccCCcCcc
Q 004005          611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF---SNLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSG  685 (779)
Q Consensus       611 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~  685 (779)
                      +++..|..|.++++|++|+|++|++++..+..|   ..+++|+.|+|++|+++...+..+..++.  ++.|++++|++.|
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            877777778888888888888888876555555   55778888888888887666666777765  3778888888877


Q ss_pred             cCC
Q 004005          686 EIP  688 (779)
Q Consensus       686 ~~p  688 (779)
                      .|.
T Consensus       204 ~C~  206 (361)
T 2xot_A          204 DCK  206 (361)
T ss_dssp             CHH
T ss_pred             CcC
Confidence            664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=7.3e-19  Score=170.41  Aligned_cols=158  Identities=22%  Similarity=0.253  Sum_probs=141.9

Q ss_pred             CEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccc
Q 004005          501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE  580 (779)
Q Consensus       501 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (779)
                      +.++++++.++. +|..+.  ++++.|++++|.+++..+..|..++                                  
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~----------------------------------   56 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK----------------------------------   56 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence            688999999984 454443  7999999999999877766665543                                  


Q ss_pred             eeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005          581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  660 (779)
                                         +|++|+|++|++++..|..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|+++
T Consensus        57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                               7999999999999888999999999999999999999877788999999999999999999


Q ss_pred             CCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005          661 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP  714 (779)
Q Consensus       661 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  714 (779)
                      +..|..|..+++|++|++++|++++..+..+..+.++..+.+.+|+|.|+|.+.
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            999999999999999999999999888888888999999999999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.3e-18  Score=166.88  Aligned_cols=158  Identities=16%  Similarity=0.226  Sum_probs=140.4

Q ss_pred             CEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC-cccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005          501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH  579 (779)
Q Consensus       501 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (779)
                      +.+++++|.++. +|..+  .+.++.|++++|.+++..+ ..|..+                                  
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l----------------------------------   56 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKL----------------------------------   56 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGC----------------------------------
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccC----------------------------------
Confidence            589999999985 45544  3567899999999987644 334443                                  


Q ss_pred             ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005          580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  659 (779)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  659 (779)
                                         ++|++|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        57 -------------------~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           57 -------------------PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             -------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             -------------------CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                               4799999999999988888999999999999999999988888899999999999999999


Q ss_pred             CCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005          660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP  714 (779)
Q Consensus       660 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  714 (779)
                      ++..|..|..+++|++|++++|++++..|..+..+.++..+.+.+|++.|+|++.
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            9999999999999999999999999998999999999999999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=6.2e-18  Score=162.84  Aligned_cols=130  Identities=28%  Similarity=0.277  Sum_probs=57.1

Q ss_pred             CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL  385 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (779)
                      +|++|++++|.+. .++...+..+++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4555555555544 333333334444555555444444433333444444444444444444333333444444444444


Q ss_pred             cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC
Q 004005          386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN  436 (779)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  436 (779)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            444444333333444444444444444444333333334444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=6.9e-18  Score=164.72  Aligned_cols=156  Identities=25%  Similarity=0.243  Sum_probs=131.6

Q ss_pred             ccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005          476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  555 (779)
Q Consensus       476 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      .+.++.+++++. .+|..+.  ++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..++         
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~---------   88 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT---------   88 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence            456888888777 4454343  7888999999988887788888888999999999988766666555543         


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  635 (779)
                                                                  +|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus        89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                        789999999999977777789999999999999999


Q ss_pred             ccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005          636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      + .+|..+..+++|++|+|++|++.+..+..|..+++|+.|++++|+++|.++
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9 678889999999999999999998777889999999999999999999886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.7e-18  Score=181.92  Aligned_cols=180  Identities=23%  Similarity=0.212  Sum_probs=104.4

Q ss_pred             cEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc-CCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005          477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  555 (779)
Q Consensus       477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      +.+++++++++. +|..+.  +.++.|+|++|++++..+..+. .+++|+.|++++|.+++..+..|..+.         
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~---------   88 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP---------   88 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC---------
Confidence            456666666653 343332  3466666666666655555555 666666666666666655544444332         


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  635 (779)
                                                                  +|++|+|++|++++..+..|.++++|++|+|++|+|
T Consensus        89 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           89 --------------------------------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI  124 (361)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence                                                        566666666666655555566666666666666666


Q ss_pred             ccCCCCCCCCCCCCCEEECCCCcCCCCCcccc---cCCCCCcEEeccCCcCcccCCCCccccccC--CcccccCCCCCCC
Q 004005          636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL---VELKTLEVFSVAYNNLSGEIPEWKAQFATF--NESSYEGNTFLCG  710 (779)
Q Consensus       636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~--~~~~~~~n~~~c~  710 (779)
                      ++..|..|.++++|++|+|++|+++...+..|   ..+++|+.||+++|+++...+..+..+..+  ..+.+.+|||.|+
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            66666666666666666666666664444444   346666666666666664433333333332  4455666666666


Q ss_pred             CC
Q 004005          711 LP  712 (779)
Q Consensus       711 ~~  712 (779)
                      |.
T Consensus       205 C~  206 (361)
T 2xot_A          205 CK  206 (361)
T ss_dssp             HH
T ss_pred             cC
Confidence            53

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=9.9e-18  Score=184.15  Aligned_cols=149  Identities=26%  Similarity=0.339  Sum_probs=101.2

Q ss_pred             CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005          473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS  552 (779)
Q Consensus       473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  552 (779)
                      +++|+.|++++|.+++ +|. +.+  +|+.|++++|++++ +|.   .+++|+.|++++|.+++ +|.   .        
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~--------  158 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L--------  158 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C--------
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c--------
Confidence            4677777777777775 454 443  77777777777775 333   56777777777777764 222   1        


Q ss_pred             CCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc
Q 004005          553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  632 (779)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  632 (779)
                                                                   +++|++|++++|++++ +|. |.  ++|+.|+|++
T Consensus       159 ---------------------------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          159 ---------------------------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST  189 (571)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred             ---------------------------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence                                                         2357778888888775 555 55  7788888888


Q ss_pred             cccccCCCCCCCCCCCC-------CEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc
Q 004005          633 NNLTGSIPSTFSNLKHV-------ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA  695 (779)
Q Consensus       633 n~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  695 (779)
                      |+|+ .+|. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus       190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            8887 4454 544  66       88888888887 4666666788888888888888877776555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.6e-17  Score=162.11  Aligned_cols=157  Identities=22%  Similarity=0.266  Sum_probs=139.7

Q ss_pred             CCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccc
Q 004005          499 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN  578 (779)
Q Consensus       499 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (779)
                      +-+.++.+++.++ .+|..+  .++|+.|++++|.+++..|..|..++                                
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------   64 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLI--------------------------------   64 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence            3578999999998 445444  38999999999999988888776654                                


Q ss_pred             cceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCc
Q 004005          579 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK  658 (779)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  658 (779)
                                           +|++|+|++|++....+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus        65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                 79999999999987666778999999999999999998888889999999999999999


Q ss_pred             CCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005          659 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       659 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      ++ .+|..+..+++|++|++++|+++...+..+..+.++..+.+.+||+.|+|+
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            98 778889999999999999999998777778889999999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.1e-17  Score=166.45  Aligned_cols=152  Identities=26%  Similarity=0.379  Sum_probs=124.4

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|+.|++++|++++..+  +..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++.  ..+..     
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~-----  132 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVH-----  132 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGG-----
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcC-----
Confidence            6678889999999999886544  88889999999999998853  3488889999999999988753  12222     


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                      +++|+.|++++|++++.  ..+..+++|++|+
T Consensus       133 ------------------------------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  162 (291)
T 1h6t_A          133 ------------------------------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (291)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ------------------------------------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence                                                            34799999999999864  6788899999999


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCccc
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  686 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  686 (779)
                      +++|++++..+  +..+++|++|++++|++++. + .+..+++|+.|++++|+++..
T Consensus       163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            99999996654  88999999999999999854 4 488999999999999998853

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=3.4e-17  Score=179.91  Aligned_cols=187  Identities=27%  Similarity=0.344  Sum_probs=119.9

Q ss_pred             CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005          379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  458 (779)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  458 (779)
                      +|+.|++++|.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|+++++                 
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-----------------  115 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-----------------  115 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-----------------
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-----------------
Confidence            78888888888775 44433  267788888887777 344   3466777777777776642                 


Q ss_pred             cccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCC
Q 004005          459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI  538 (779)
Q Consensus       459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  538 (779)
                             |.  +..  +|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +
T Consensus       116 -------p~--l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          116 -------PE--LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             -------CC--CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             -------ch--hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence                   22  222  56666666666664 343   45667777777777664 333   45677777777777665 3


Q ss_pred             CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005          539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ  618 (779)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  618 (779)
                      |. +.                                                       ++|+.|+|++|+++ .+|. 
T Consensus       176 p~-l~-------------------------------------------------------~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          176 PE-LP-------------------------------------------------------ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             CC-CC-------------------------------------------------------TTCCEEECCSSCCS-SCCC-
T ss_pred             ch-hh-------------------------------------------------------CCCCEEECcCCCCC-chhh-
Confidence            32 22                                                       15777777777776 4555 


Q ss_pred             ccCCCCC-------CEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCC
Q 004005          619 IGNLTRI-------QTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  670 (779)
Q Consensus       619 l~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  670 (779)
                      +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            443  56       78888888887 456666668888888888888877777766554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=4.7e-17  Score=153.96  Aligned_cols=127  Identities=24%  Similarity=0.390  Sum_probs=98.1

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      +|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            68888888888887778889999999999999999998888889999999999999999998889999999999999999


Q ss_pred             CCcCcccCCCCcccccc-CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 004005          680 YNNLSGEIPEWKAQFAT-FNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNL  735 (779)
Q Consensus       680 ~N~l~~~~p~~~~~~~~-~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~~~~  735 (779)
                      +|+++|.++.  .++.. +....+.++..       .|..|....+..+.+....++
T Consensus       135 ~N~l~c~c~l--~~~~~~l~~~~~~~~~~-------~C~~P~~l~~~~l~~l~~~~~  182 (192)
T 1w8a_A          135 SNPFNCNCHL--AWFAEWLRKKSLNGGAA-------RCGAPSKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             TCCBCCSGGG--HHHHHHHHHHCCSGGGC-------BBCSSTTTTTSBGGGSCTTTC
T ss_pred             CCCccCcCcc--hHHHHHHHHcCCCCCCC-------CCCCChHHcCCChhhCcHhhc
Confidence            9999988874  22222 11222333322       377777777766666555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.2e-16  Score=177.65  Aligned_cols=80  Identities=28%  Similarity=0.440  Sum_probs=43.8

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      +|+.|+|++|++++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|++.+.  ..+..+++|+.|+++
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  205 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence            455555555555532  345555555555665555554433  55555566666666655532  235555566666666


Q ss_pred             CCcCcc
Q 004005          680 YNNLSG  685 (779)
Q Consensus       680 ~N~l~~  685 (779)
                      +|++++
T Consensus       206 ~N~l~~  211 (605)
T 1m9s_A          206 SQECLN  211 (605)
T ss_dssp             SEEEEC
T ss_pred             CCcCcC
Confidence            665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=5.7e-17  Score=161.71  Aligned_cols=169  Identities=20%  Similarity=0.233  Sum_probs=135.9

Q ss_pred             cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005          450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  529 (779)
Q Consensus       450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  529 (779)
                      ++..++++++.+... +  .+..+++|+.|++++|+++. ++ .+..+++|+.|++++|++++..+  +..+++|+.|++
T Consensus        20 ~l~~l~l~~~~i~~~-~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDL-V--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSE-E--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcccc-c--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            344455555555332 2  26778899999999999885 44 58889999999999999986555  889999999999


Q ss_pred             cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005          530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  609 (779)
Q Consensus       530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  609 (779)
                      ++|++++..+...                                                        ++|+.|++++|
T Consensus        93 ~~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N  116 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNN  116 (263)
T ss_dssp             CSSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSS
T ss_pred             CCCccCCcCcccc--------------------------------------------------------CcccEEEccCC
Confidence            9999875322111                                                        26999999999


Q ss_pred             cccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccC
Q 004005          610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  687 (779)
Q Consensus       610 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  687 (779)
                      ++++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++.+.  ..+..+++|+.|++++|++++..
T Consensus       117 ~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          117 ELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             ccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            99863  3589999999999999999965 3 688999999999999999876  67889999999999999998663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=151.49  Aligned_cols=135  Identities=21%  Similarity=0.339  Sum_probs=95.8

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      .+++|++++|+++ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            5677777777776 456667777777777777777776666677777777777777777776666677777777777777


Q ss_pred             CCcCcccCCCCccccccCCcccccCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCCc
Q 004005          680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL----------------PICRSPATMPEASIGNEQDDNL  735 (779)
Q Consensus       680 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l----------------~~c~~~~~~~~~~~~~~~~~~~  735 (779)
                      +|+++...+..+..+.++..+.+.+|||.|+|.+                ..|..|....++.+.+...+.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~  182 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF  182 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGC
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHe
Confidence            7777765555566667777777777777777643                1388888888877766655544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=9e-17  Score=152.97  Aligned_cols=154  Identities=16%  Similarity=0.260  Sum_probs=121.2

Q ss_pred             cCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005          471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  550 (779)
Q Consensus       471 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  550 (779)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+     
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-----  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL-----  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-----
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCC-----
Confidence            45678888888888888 444 57788889999998887753  3467888899999999988876555555443     


Q ss_pred             ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEEC
Q 004005          551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  630 (779)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  630 (779)
                                                                      ++|++|++++|++++..+..+..+++|++|++
T Consensus       112 ------------------------------------------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          112 ------------------------------------------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             ------------------------------------------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             ------------------------------------------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                            37899999999998777888999999999999


Q ss_pred             cccc-cccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005          631 SHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  685 (779)
Q Consensus       631 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  685 (779)
                      ++|+ ++ ..| .+..+++|++|++++|++++. + .+..+++|++|++++|++..
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9998 66 444 688899999999999999853 3 67889999999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.9e-15  Score=159.73  Aligned_cols=249  Identities=17%  Similarity=0.191  Sum_probs=167.6

Q ss_pred             CccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCccc
Q 004005          371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS  450 (779)
Q Consensus       371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  450 (779)
                      ..+|.++ +|+.+.+.++ +..+...+|.++ +|+++.+.+ .+..+.+.+|.++++|+.+++.+|+++.+....|...+
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~  204 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG  204 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence            3344443 3444444433 333333344442 355555543 33334444555556666666655555555555555556


Q ss_pred             ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 004005          451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS  530 (779)
Q Consensus       451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  530 (779)
                      |+.+.+..+ + ..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.....+|.+|++|+.+++.
T Consensus       205 L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          205 IEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred             cCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence            666666543 2 4566777889999999999864 56566777877 789999994 55666677889999999999998


Q ss_pred             CCcCC-----CCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEE
Q 004005          531 NNNLH-----GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD  605 (779)
Q Consensus       531 ~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  605 (779)
                      +|.+.     ...+.+|..+                                                     ++|+.++
T Consensus       280 ~~~~~~~~~~~I~~~aF~~c-----------------------------------------------------~~L~~l~  306 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCLEGC-----------------------------------------------------PKLARFE  306 (401)
T ss_dssp             SSCCCCCTTCEECTTTTTTC-----------------------------------------------------TTCCEEC
T ss_pred             CccccCCcccEECHHHhhCC-----------------------------------------------------ccCCeEE
Confidence            87664     2333444443                                                     3688888


Q ss_pred             ccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC-CCcEEeccCCcCc
Q 004005          606 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLS  684 (779)
Q Consensus       606 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~  684 (779)
                      +. ++++.+...+|.++++|+.++|.+| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+.
T Consensus       307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            88 4577667778999999999999665 776778899999 999999999988877777888774 7888888877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.2e-16  Score=175.59  Aligned_cols=163  Identities=23%  Similarity=0.339  Sum_probs=88.7

Q ss_pred             EEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcc
Q 004005          335 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL  414 (779)
Q Consensus       335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  414 (779)
                      +.+..+.+....  .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus        26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            344444444322  233556666667766666533 2 35666666666666666654433  55566666666666655


Q ss_pred             cCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccc
Q 004005          415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV  494 (779)
Q Consensus       415 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  494 (779)
                      .+.  ..+..+++|+.|++++|.+.+.                        +  .+..+++|+.|+|++|.+++.  ..+
T Consensus       100 ~~l--~~l~~l~~L~~L~Ls~N~l~~l------------------------~--~l~~l~~L~~L~Ls~N~l~~l--~~l  149 (605)
T 1m9s_A          100 KDL--SSLKDLKKLKSLSLEHNGISDI------------------------N--GLVHLPQLESLYLGNNKITDI--TVL  149 (605)
T ss_dssp             CCC--TTSTTCTTCCEEECTTSCCCCC------------------------G--GGGGCTTCSEEECCSSCCCCC--GGG
T ss_pred             CCC--hhhccCCCCCEEEecCCCCCCC------------------------c--cccCCCccCEEECCCCccCCc--hhh
Confidence            532  1344555555555555544321                        1  144556666666666666543  345


Q ss_pred             cCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCC
Q 004005          495 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH  535 (779)
Q Consensus       495 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  535 (779)
                      ..+++|+.|+|++|.+++..+  +..+++|+.|+|++|+++
T Consensus       150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            556666666666666654433  555556666666555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=5.8e-17  Score=168.04  Aligned_cols=288  Identities=14%  Similarity=0.094  Sum_probs=148.5

Q ss_pred             CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccC--ccCcccCCCCCCCCEEEccCCcCCccCCccccC-----
Q 004005          304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ--GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK-----  376 (779)
Q Consensus       304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----  376 (779)
                      +++++.|.++++--. .-...+...+++|+.|+|++|++.  ......   ++.++.+.+..+.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhccccccc
Confidence            345566666543211 111122222566666666666665  211111   1223344444442   23345555     


Q ss_pred             ---CCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccE
Q 004005          377 ---CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ  453 (779)
Q Consensus       377 ---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~  453 (779)
                         +++|+.+++.+ .+..+.+.+|.++++|+++++.+|.+..+.+.+|.++.++..+....+.....            
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~------------  163 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF------------  163 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT------------
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc------------
Confidence               66777777766 55555556666677777777776666655566666665555555443211000            


Q ss_pred             EEccCcccccccCcccccCCCCcc-EEeccCccCCCccCcc-c---cCCCCCCEEEccCCcccccccccccCCCCCCEEE
Q 004005          454 VHLSKNMLHGQLKRGTFFNCSSLV-TLDLSYNRLNGSIPDW-V---DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLD  528 (779)
Q Consensus       454 L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~-~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  528 (779)
                              ...+...+|.++..|+ .+.+.....   ++.. +   ....+++.+.+.++-...........+++|+.++
T Consensus       164 --------~~~i~~~~f~~~~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~  232 (329)
T 3sb4_A          164 --------KNRWEHFAFIEGEPLETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD  232 (329)
T ss_dssp             --------STTTTTSCEEESCCCEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE
T ss_pred             --------cccccccccccccccceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE
Confidence                    0112222344455554 333332111   1111 1   1133444555544321111111112256666666


Q ss_pred             ccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccC
Q 004005          529 LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC  608 (779)
Q Consensus       529 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  608 (779)
                      +++|+++...+.+|..+.                                                     +|+++++.+
T Consensus       233 L~~n~i~~I~~~aF~~~~-----------------------------------------------------~L~~l~l~~  259 (329)
T 3sb4_A          233 ISKTNATTIPDFTFAQKK-----------------------------------------------------YLLKIKLPH  259 (329)
T ss_dssp             CTTBCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCT
T ss_pred             CCCCCcceecHhhhhCCC-----------------------------------------------------CCCEEECCc
Confidence            666666655555555543                                                     566666666


Q ss_pred             CcccccCcccccCCCCCC-EEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005          609 NKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  677 (779)
Q Consensus       609 n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  677 (779)
                      | +..+.+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.+++++|++..+.+.+|.++++|+.++
T Consensus       260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5 5555556677777777 777776 66656667777777777777777777766666777777777665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=6.2e-16  Score=156.86  Aligned_cols=147  Identities=25%  Similarity=0.373  Sum_probs=83.1

Q ss_pred             CCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEE
Q 004005          280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  359 (779)
Q Consensus       280 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  359 (779)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|
T Consensus        67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L  139 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  139 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence            3445555555554443222  555555566666655554 3332  23455666666666655542  334556666666


Q ss_pred             EccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005          360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  439 (779)
                      ++++|++.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus       140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            6666666544  345666666666666666664433  56666666666666666643 2 3566666666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=2.6e-16  Score=148.87  Aligned_cols=174  Identities=24%  Similarity=0.308  Sum_probs=132.5

Q ss_pred             cEEeccCccCCCccCccccCCCCCCEEEccCCcccccccc-cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005          477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  555 (779)
Q Consensus       477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      +.+++++++++ .+|..+.  .+++.|++++|++++..+. .+..+++|++|++++|.+++..|..|..+.         
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   78 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence            67888888887 4555443  3889999999999866654 488899999999999999888787776644         


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  635 (779)
                                                                  +|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                                                        799999999999988888899999999999999999


Q ss_pred             ccCCCCCCCCCCCCCEEECCCCcCCCCCccc-ccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCC
Q 004005          636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL  711 (779)
Q Consensus       636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~  711 (779)
                      ++..|..|..+++|++|+|++|++.+..+.. +.  ..++...+.++...|..|..+.   ...-..+..+.+.|..
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~l~---~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCCCC
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChHHc---CCChhhCcHhhcCcCC
Confidence            9999999999999999999999998765521 11  1122224556677777776432   2233345556666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=1.1e-16  Score=165.96  Aligned_cols=285  Identities=13%  Similarity=0.081  Sum_probs=190.9

Q ss_pred             CCCCCEEEccCcccCccCcccCCC-CCCCCEEEccCCcCC--ccCCccccCCCCCCEEEccCCCCCCCcCccccC-----
Q 004005          329 CVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFV--GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN-----  400 (779)
Q Consensus       329 ~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----  400 (779)
                      +.++++|.++++ +.......+.. +++|+.|||++|++.  ...+..+   +.++.+.+..+.   +.+..|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhccccccc
Confidence            456888888764 22111222333 788999999999887  2222222   224455555553   33455666     


Q ss_pred             ---CCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCcc
Q 004005          401 ---LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV  477 (779)
Q Consensus       401 ---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  477 (779)
                         +++|+++++.+ .++.+.+.+|.++++|+.+++.+|.+..                        ++..+|.++.++.
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~------------------------i~~~aF~~~~~l~  151 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN------------------------LLPEALADSVTAI  151 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE------------------------ECTTSSCTTTCEE
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc------------------------cchhhhcCCCceE
Confidence               78888888877 6766666777888888888887776653                        3344466677777


Q ss_pred             EEeccCc----cCCCccCccccCCCCCC-EEEccCCccc-ccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005          478 TLDLSYN----RLNGSIPDWVDGLSQLS-HLILGHNNLE-GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  551 (779)
Q Consensus       478 ~L~L~~n----~i~~~~~~~~~~l~~L~-~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  551 (779)
                      .+....+    ........+|.++..|+ .+.+....-. ......-....+++.+.+.++-..    ..+...      
T Consensus       152 ~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----~~~~~l------  221 (329)
T 3sb4_A          152 FIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN----ADFKLI------  221 (329)
T ss_dssp             EECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH----HHHHHH------
T ss_pred             EecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH----HHHHHH------
Confidence            7766553    22333455677777777 5555443211 111111123456677777665211    000000      


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECc
Q 004005          552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS  631 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  631 (779)
                                                                 ...+++|++++|++|+++.+.+.+|.++++|++|+|+
T Consensus       222 -------------------------------------------~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          222 -------------------------------------------RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             -------------------------------------------HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             -------------------------------------------HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                                       0113479999999999998778889999999999999


Q ss_pred             ccccccCCCCCCCCCCCCC-EEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcc
Q 004005          632 HNNLTGSIPSTFSNLKHVE-SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNES  700 (779)
Q Consensus       632 ~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~  700 (779)
                      +| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+..|..+.++..+
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            98 8878889999999999 999999 8887888999999999999999999997777777777666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.65  E-value=4e-15  Score=158.31  Aligned_cols=220  Identities=17%  Similarity=0.195  Sum_probs=108.9

Q ss_pred             CccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCC
Q 004005          298 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC  377 (779)
Q Consensus       298 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  377 (779)
                      ..+|.++++|+.+++..+ ++ .++...+.++.+|+.+.+..+ +..+...+|.++..++......  .......+|.++
T Consensus        87 ~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c  161 (394)
T 4fs7_A           87 EFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATC  161 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC
T ss_pred             hhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhccc
Confidence            444555555555555433 32 444445555555555444332 3333344444443222222111  122333456666


Q ss_pred             CCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEcc
Q 004005          378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS  457 (779)
Q Consensus       378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  457 (779)
                      ++|+.+.+.++. .......|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... .....+...+|+.+.+.
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip  238 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIP  238 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEEC
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEEC
Confidence            666666665442 2244455666666666666554 33344455666666666665544322 22233334455555554


Q ss_pred             CcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005          458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN  531 (779)
Q Consensus       458 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  531 (779)
                      ...  ..+...+|.++..++.+.+..+... ....+|..+..++.+....+.+.   ...|..+.+|+.+.+.+
T Consensus       239 ~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          239 DSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             TTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred             CCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence            322  2344445666666666666554332 44455666666666655544322   23455555565555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=4.8e-16  Score=147.91  Aligned_cols=133  Identities=18%  Similarity=0.288  Sum_probs=94.3

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+    
T Consensus        62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l----  135 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL----  135 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTC----
T ss_pred             HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhC----
Confidence            5666777777777776653  2356777778888888887776666777777888888888887765444444332    


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCc-ccccCcccccCCCCCCEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK-LIGHIPPQIGNLTRIQTL  628 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L  628 (779)
                                                                       ++|++|++++|+ ++ .+| .+..+++|++|
T Consensus       136 -------------------------------------------------~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L  164 (197)
T 4ezg_A          136 -------------------------------------------------PKVNSIDLSYNGAIT-DIM-PLKTLPELKSL  164 (197)
T ss_dssp             -------------------------------------------------SSCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred             -------------------------------------------------CCCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence                                                             368888888887 54 444 67888888889


Q ss_pred             ECcccccccCCCCCCCCCCCCCEEECCCCcCCC
Q 004005          629 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG  661 (779)
Q Consensus       629 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  661 (779)
                      ++++|++++. + .+..+++|++|++++|++.+
T Consensus       165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9988888853 3 67888889999999888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.2e-14  Score=153.51  Aligned_cols=270  Identities=13%  Similarity=0.164  Sum_probs=135.7

Q ss_pred             CCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEE
Q 004005          305 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLY  384 (779)
Q Consensus       305 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  384 (779)
                      ..++.+.+.++ ++ .++...|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+.+.. .+..+.+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            44444444432 22 3444444443 4555555444 44444455554 2466666654 34444455666666666666


Q ss_pred             ccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccc
Q 004005          385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ  464 (779)
Q Consensus       385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  464 (779)
                      +.+|.+..+....|. .++|+.+.+.++ +..+...+|.++++|+.+++..+ ++.+...+|...+|+.+.+..+ + ..
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i-~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-V-TN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-C-CE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-c-cE
Confidence            666665544444444 356666666533 44445556666666666666543 3333333333333444443221 1 23


Q ss_pred             cCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005          465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  544 (779)
Q Consensus       465 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  544 (779)
                      ++..+|.+|++|+.+++.++.+..                   +.+......+|.+|++|+.+++.+ .++.....+|..
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~  321 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG  321 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred             EChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence            333445555555555554443320                   000022333444455555555442 233333333333


Q ss_pred             CcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCC
Q 004005          545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR  624 (779)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  624 (779)
                      ++                                                     +|+.+++..+ ++.+.+.+|.++ +
T Consensus       322 c~-----------------------------------------------------~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          322 NR-----------------------------------------------------KVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             CC-----------------------------------------------------SCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             CC-----------------------------------------------------CccEEEECcc-ccEEcHHhCCCC-C
Confidence            22                                                     4555555333 444455667777 7


Q ss_pred             CCEEECcccccccCCCCCCCCCC-CCCEEECCCCcCC
Q 004005          625 IQTLNLSHNNLTGSIPSTFSNLK-HVESLDLSNNKLN  660 (779)
Q Consensus       625 L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~  660 (779)
                      |+.+++++|.+....+..|.+++ .++.|++..+.+.
T Consensus       347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            77777777777666666777764 6777777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.4e-15  Score=140.98  Aligned_cols=89  Identities=28%  Similarity=0.319  Sum_probs=77.0

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      +|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            67778888888877777778888999999999999998888889999999999999999987777778889999999999


Q ss_pred             CCcCcccCC
Q 004005          680 YNNLSGEIP  688 (779)
Q Consensus       680 ~N~l~~~~p  688 (779)
                      +|++.|.|+
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            999998776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=1.4e-15  Score=151.61  Aligned_cols=169  Identities=19%  Similarity=0.244  Sum_probs=109.1

Q ss_pred             CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEc
Q 004005          330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM  409 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (779)
                      .++..++++++.+.+..  .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34555666666666433  455667777777777777633 3 56667777777777777765433  666777777777


Q ss_pred             cCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCc
Q 004005          410 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  489 (779)
Q Consensus       410 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  489 (779)
                      ++|++++..+  +.. ++|+.|++++|++++.                        +  .+..+++|+.|++++|++++.
T Consensus        93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~------------------------~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT------------------------D--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS------------------------G--GGTTCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCcCc--ccc-CcccEEEccCCccCCC------------------------h--hhcCcccccEEECCCCcCCCC
Confidence            7776664322  222 5666666666655532                        1  266677777777777777754


Q ss_pred             cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC
Q 004005          490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP  537 (779)
Q Consensus       490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  537 (779)
                       + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++.+.
T Consensus       144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             2 466777777777777777754  5567777777777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.1e-14  Score=135.80  Aligned_cols=89  Identities=24%  Similarity=0.280  Sum_probs=75.2

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            67778888887776666667888899999999999987777778889999999999999987666667889999999999


Q ss_pred             CCcCcccCC
Q 004005          680 YNNLSGEIP  688 (779)
Q Consensus       680 ~N~l~~~~p  688 (779)
                      +|+++|.+|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            999998877

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=7.1e-18  Score=186.56  Aligned_cols=122  Identities=27%  Similarity=0.306  Sum_probs=83.9

Q ss_pred             CCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccc
Q 004005          499 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN  578 (779)
Q Consensus       499 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (779)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..++                                
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~--------------------------------  486 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR--------------------------------  486 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT--------------------------------
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC--------------------------------
Confidence            36667777776664 343 666677777777777766 4455554433                                


Q ss_pred             cceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCC-CCCCCCCCCCCEEECCCC
Q 004005          579 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKHVESLDLSNN  657 (779)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N  657 (779)
                                           +|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..|..+++|+.|+|++|
T Consensus       487 ---------------------~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          487 ---------------------CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             ---------------------TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ---------------------CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence                                 67777777777775 55 6777888888888888888665 777888888888888888


Q ss_pred             cCCCCCcc---cccCCCCCcEEec
Q 004005          658 KLNGKIPH---QLVELKTLEVFSV  678 (779)
Q Consensus       658 ~l~~~~~~---~~~~l~~L~~L~l  678 (779)
                      ++++..|.   .+..+++|+.||+
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCccHHHHHHHHCcccCccCC
Confidence            88765442   2334778888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.8e-15  Score=137.10  Aligned_cols=85  Identities=25%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCC-CCCCCCCCCCEEECCCCcCCCCCc---ccccCCCCCcE
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV  675 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~  675 (779)
                      +|++|++++|++++.+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..+   ..+..+++|++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            45555555555554455555556666666666666664321 456666667777777776664444   35666777777


Q ss_pred             EeccCCcCc
Q 004005          676 FSVAYNNLS  684 (779)
Q Consensus       676 L~l~~N~l~  684 (779)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            777777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=7.3e-14  Score=148.55  Aligned_cols=317  Identities=11%  Similarity=0.081  Sum_probs=205.6

Q ss_pred             CCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCc
Q 004005          293 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ  372 (779)
Q Consensus       293 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  372 (779)
                      ++.....+|.++.+|+.+.+..+ ++ .+....|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            34455667888888999888754 55 777788888899999988754 66666778888888888777654 4445556


Q ss_pred             cccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccc
Q 004005          373 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSI  451 (779)
Q Consensus       373 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L  451 (779)
                      +|.++..++......  .......+|.++++|+.+.+.++. ..+....|.++.+|+.+++..+ +..+....|. +..|
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            777765433332222  222445678888888888887653 3355567788888888877665 3333333333 4455


Q ss_pred             cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005          452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN  531 (779)
Q Consensus       452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  531 (779)
                      +.+.+..+..  .+... +..+.+|+.+.+... ++.....+|.++..|+.+.+..+... .....|..+..++.+....
T Consensus       211 ~~i~~~~~~~--~i~~~-~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          211 ENMEFPNSLY--YLGDF-ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CBCCCCTTCC--EECTT-TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             ceeecCCCce--Eeehh-hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            5555444322  12222 233455666655432 22234445566666666666555433 4444556666666655544


Q ss_pred             CcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcc
Q 004005          532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL  611 (779)
Q Consensus       532 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  611 (779)
                      +.+.   ..+|..                                                     ..+|+.+.+..+ +
T Consensus       286 ~~i~---~~~F~~-----------------------------------------------------~~~L~~i~l~~~-i  308 (394)
T 4fs7_A          286 VIVP---EKTFYG-----------------------------------------------------CSSLTEVKLLDS-V  308 (394)
T ss_dssp             SEEC---TTTTTT-----------------------------------------------------CTTCCEEEECTT-C
T ss_pred             eeec---cccccc-----------------------------------------------------cccccccccccc-c
Confidence            3221   112221                                                     336888888764 6


Q ss_pred             cccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005          612 IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  681 (779)
Q Consensus       612 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  681 (779)
                      ..+...+|.++.+|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            6566778999999999999854 77677889999999999999877 77677789999999999998755

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=7.2e-17  Score=178.52  Aligned_cols=180  Identities=23%  Similarity=0.276  Sum_probs=127.6

Q ss_pred             cccEEEccCcccccccCcccccCCCCccEEeccCcc-------------CCCccCccccCCCCCCEEE-ccCCccccccc
Q 004005          450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR-------------LNGSIPDWVDGLSQLSHLI-LGHNNLEGEVS  515 (779)
Q Consensus       450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~  515 (779)
                      +|+.|++++|.+. .+|.. ++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+.....
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~  427 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  427 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             cceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence            3444444444432 33333 4555555555554443             3445556666666666666 44443321100


Q ss_pred             c-----ccc--CCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeecc
Q 004005          516 V-----QLC--ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKN  588 (779)
Q Consensus       516 ~-----~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (779)
                      .     .+.  ....|+.|++++|.+++ +|. +..+                                           
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l-------------------------------------------  462 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQL-------------------------------------------  462 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGG-------------------------------------------
T ss_pred             hhhhcccccccCccCceEEEecCCCCCC-CcC-cccc-------------------------------------------
Confidence            0     000  01358999999999986 343 5443                                           


Q ss_pred             ceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCC-cccc
Q 004005          589 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQL  667 (779)
Q Consensus       589 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~  667 (779)
                                ++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..+
T Consensus       463 ----------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          463 ----------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             ----------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             ----------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence                      37999999999999 789999999999999999999996 56 8999999999999999999887 9999


Q ss_pred             cCCCCCcEEeccCCcCcccCCC
Q 004005          668 VELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       668 ~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      ..+++|+.|++++|++++.+|.
T Consensus       530 ~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GGCTTCCEEECTTSGGGGSSSC
T ss_pred             hcCCCCCEEEecCCcCCCCccH
Confidence            9999999999999999987664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=6.6e-15  Score=136.14  Aligned_cols=134  Identities=25%  Similarity=0.245  Sum_probs=104.0

Q ss_pred             CCCccEEeccCccCC-CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005          473 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  551 (779)
Q Consensus       473 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  551 (779)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+      
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------   94 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------   94 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC------
Confidence            467888888888887 56677777888888888888888755  667788888888888888876555544332      


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccC-cccccCCCCCCEEEC
Q 004005          552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI-PPQIGNLTRIQTLNL  630 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L  630 (779)
                                                                     ++|++|++++|++++.. +..+..+++|++|++
T Consensus        95 -----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           95 -----------------------------------------------PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             -----------------------------------------------TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             -----------------------------------------------CCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                           36888888888887532 267888889999999


Q ss_pred             cccccccCCC---CCCCCCCCCCEEECCCCcCCC
Q 004005          631 SHNNLTGSIP---STFSNLKHVESLDLSNNKLNG  661 (779)
Q Consensus       631 s~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~  661 (779)
                      ++|++++..+   ..+..+++|++|++++|.+..
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999986555   478888999999999998873

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.1e-15  Score=132.85  Aligned_cols=80  Identities=24%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccC-CCCCCCCCCCCCEEECCCCcCCCCCc---ccccCCCCCcE
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV  675 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~  675 (779)
                      +|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|++
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            455666666666554555555666666666666666643 23556666777777777777765544   45666777777


Q ss_pred             Eecc
Q 004005          676 FSVA  679 (779)
Q Consensus       676 L~l~  679 (779)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            7665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=4.6e-14  Score=131.64  Aligned_cols=114  Identities=23%  Similarity=0.278  Sum_probs=104.3

Q ss_pred             cCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005          599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  678 (779)
Q Consensus       599 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  678 (779)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            46999999999999777777899999999999999999888888999999999999999999888888899999999999


Q ss_pred             cCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005          679 AYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       679 ~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      ++|++++..+..+..+.++..+.+.+|++.|+|+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999997777667788999999999999999886

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=1e-14  Score=131.78  Aligned_cols=129  Identities=26%  Similarity=0.304  Sum_probs=97.7

Q ss_pred             CCCccEEeccCccCC-CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005          473 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY  551 (779)
Q Consensus       473 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  551 (779)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+      
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------   87 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC------   87 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC------
Confidence            367788888888887 56677777788888888888888755  567778888888888888876555444332      


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCccccc-CcccccCCCCCCEEEC
Q 004005          552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNL  630 (779)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L  630 (779)
                                                                     ++|++|++++|++++. .+..+..+++|++|++
T Consensus        88 -----------------------------------------------~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           88 -----------------------------------------------PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             -----------------------------------------------TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                                           3688888888888753 3367888888999999


Q ss_pred             cccccccCCC---CCCCCCCCCCEEECCC
Q 004005          631 SHNNLTGSIP---STFSNLKHVESLDLSN  656 (779)
Q Consensus       631 s~n~l~~~~~---~~~~~l~~L~~L~L~~  656 (779)
                      ++|++++..+   ..+..+++|++|++++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9998886655   4688888888888864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=2.1e-15  Score=172.34  Aligned_cols=166  Identities=22%  Similarity=0.144  Sum_probs=84.1

Q ss_pred             CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEc
Q 004005          354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI  433 (779)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  433 (779)
                      +.++.|++.+|.+... +..     .++.++|+.+.+.+              +++..|.+. ..+..+..++.|+.|++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            5577777777776642 222     23444444443331              122233333 33445555666666666


Q ss_pred             cCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccc
Q 004005          434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  513 (779)
Q Consensus       434 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  513 (779)
                      ++|.+....+..+.+++|+.|+|++|.+. .+|.. |.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence            66666544444455556666666666664 55544 778888888888888888 56888888888888888888887 5


Q ss_pred             ccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005          514 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  544 (779)
Q Consensus       514 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  544 (779)
                      +|..|..+++|+.|+|++|++++.+|..+..
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            5666888888888888888888766665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=4e-15  Score=170.05  Aligned_cols=191  Identities=19%  Similarity=0.241  Sum_probs=78.0

Q ss_pred             CCCcEEEccCCcCccCCCCccCcccccEEE-----ccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCC
Q 004005          426 DSLQILDISDNNISGSLPSCFHPLSIKQVH-----LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL  500 (779)
Q Consensus       426 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~-----l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  500 (779)
                      +.++.|++.+|.+.......+....|..+.     +..|.+.  ++...|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            456777787777765433333322222222     2222221  23333556666666666666665 344444456666


Q ss_pred             CEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccc
Q 004005          501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE  580 (779)
Q Consensus       501 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (779)
                      +.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+.                                  
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~----------------------------------  293 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF----------------------------------  293 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT----------------------------------
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC----------------------------------
Confidence            66666666666 45555666666666666666665 3344443322                                  


Q ss_pred             eeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC-CCCEEECCCCcC
Q 004005          581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-HVESLDLSNNKL  659 (779)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l  659 (779)
                                         +|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+. .+..|+|++|.+
T Consensus       294 -------------------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          294 -------------------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             -------------------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             -------------------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence                               5666666666665 4555566666666666666666655555443332 112355666666


Q ss_pred             CCCCcccccCCCCCcEEeccCC
Q 004005          660 NGKIPHQLVELKTLEVFSVAYN  681 (779)
Q Consensus       660 ~~~~~~~~~~l~~L~~L~l~~N  681 (779)
                      ++.+|.      .|+.|+++.|
T Consensus       354 ~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          354 EIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCCCCC------C---------
T ss_pred             cCcCcc------ccceeEeecc
Confidence            655553      3455556655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1e-13  Score=127.96  Aligned_cols=90  Identities=23%  Similarity=0.257  Sum_probs=84.2

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      .|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            68999999999998889999999999999999999998888889999999999999999998777789999999999999


Q ss_pred             CCcCcccCCC
Q 004005          680 YNNLSGEIPE  689 (779)
Q Consensus       680 ~N~l~~~~p~  689 (779)
                      +|+++|.++.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999998864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=2.3e-12  Score=137.00  Aligned_cols=148  Identities=14%  Similarity=0.127  Sum_probs=77.9

Q ss_pred             CcEEECCCCCCCcccCccccCCCCCCEEEccCCc---CccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEE
Q 004005          283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH---LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL  359 (779)
Q Consensus       283 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  359 (779)
                      |+.+.+..+ ++.....+|.++++|+.+.+..+.   ++ .+....|.++.+|+.+.+..+ ++.+....|..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            444444322 333444556666666666665542   33 455555556666666555433 344445556666666666


Q ss_pred             EccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCc
Q 004005          360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN  437 (779)
Q Consensus       360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  437 (779)
                      .+..+ +..+...+|..+..|+.+.+.++ +..+...+|.+ ..|+.+.+..+-.. ....+|.++.+++........
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~  216 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSES  216 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSS
T ss_pred             cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccc
Confidence            66543 33344456666666666666544 33233344433 45666666554322 334556666666666555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.1e-13  Score=125.77  Aligned_cols=110  Identities=25%  Similarity=0.261  Sum_probs=100.8

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      ..+.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3678999999998 4776664  799999999999998889999999999999999999998888888999999999999


Q ss_pred             CCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005          680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       680 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      +|++++..+..+..+.++..+.+.+|++.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998877778899999999999999999985

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=1.5e-13  Score=128.01  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCC--CCCCCCCCCEEECCCCcCCCCCcc----cccCCCCC
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTL  673 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L  673 (779)
                      +|++|++++|++++..+..+..+++|++|++++|+++. .|.  .+..+++|+.|++++|++.. .|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence            45666666666654433444666777777777777753 343  56677777777777777763 344    36777788


Q ss_pred             cEEeccCCcCcc
Q 004005          674 EVFSVAYNNLSG  685 (779)
Q Consensus       674 ~~L~l~~N~l~~  685 (779)
                      ++||+++|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            888887776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=1.7e-13  Score=127.59  Aligned_cols=133  Identities=20%  Similarity=0.195  Sum_probs=102.9

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|+.|++++|+++. ++......++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..|..+    
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l----   87 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL----   87 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC----
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC----
Confidence            5677888899999988884 354333344899999999988864  568888899999999998875544433332    


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcc--cccCCCCCCE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QIGNLTRIQT  627 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~  627 (779)
                                                                       ++|++|++++|++. .+|.  .+..+++|+.
T Consensus        88 -------------------------------------------------~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           88 -------------------------------------------------PDLTELILTNNSLV-ELGDLDPLASLKSLTY  117 (176)
T ss_dssp             -------------------------------------------------TTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             -------------------------------------------------CCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence                                                             37899999999986 4555  7888999999


Q ss_pred             EECcccccccCCCC----CCCCCCCCCEEECCCCcCC
Q 004005          628 LNLSHNNLTGSIPS----TFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       628 L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~  660 (779)
                      |++++|+++. .|.    .+..+++|+.||+++|.+.
T Consensus       118 L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          118 LCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999984 455    3888999999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=6.8e-13  Score=122.73  Aligned_cols=109  Identities=22%  Similarity=0.266  Sum_probs=87.7

Q ss_pred             ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005          580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL  659 (779)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  659 (779)
                      ..+++....+..++.. .++.|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|++
T Consensus        15 ~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            3455555556555543 347889999999999887788888999999999999999877777788899999999999999


Q ss_pred             CCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       660 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      .+..+..|..+++|++|++++|++.|.++.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             ceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            876666688899999999999999887653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=3.2e-11  Score=128.15  Aligned_cols=299  Identities=10%  Similarity=0.162  Sum_probs=155.4

Q ss_pred             ccCccccCCC-CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcc---cCccCcccCCCCCCCCEEEccCCcCCccCC
Q 004005          296 SIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN---LQGHLFSRNFNLTNLQWLQLEGNRFVGEIP  371 (779)
Q Consensus       296 ~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  371 (779)
                      ....+|.+++ .|+.+.+..+ ++ .+....|.+|.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++.+..
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            3344566653 4777777544 43 5566666667777777666542   44455556666666666555443 333444


Q ss_pred             ccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccc
Q 004005          372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI  451 (779)
Q Consensus       372 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L  451 (779)
                      .+|..+.+|+.+.+..+ +.......|..+.+|+.+.+.++ +..+...+|.+ ..|+.+.+..+               
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~---------------  192 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK---------------  192 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT---------------
T ss_pred             hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc---------------
Confidence            55666666666666433 22233445555555555555443 22222233332 34454444332               


Q ss_pred             cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcc-------------ccCCCCCCEEEccCCcccccccccc
Q 004005          452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW-------------VDGLSQLSHLILGHNNLEGEVSVQL  518 (779)
Q Consensus       452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~l  518 (779)
                              .  ..+...+|.+|..++................             +.....+..+.+.. .++.....+|
T Consensus       193 --------~--~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF  261 (394)
T 4gt6_A          193 --------V--TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAF  261 (394)
T ss_dssp             --------C--CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTT
T ss_pred             --------c--cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEccccee
Confidence                    1  1223333555555555544433222111000             11122233333322 2222344556


Q ss_pred             cCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccc
Q 004005          519 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL  598 (779)
Q Consensus       519 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (779)
                      .++..|+.+.+.++.. .....+|..+.                                                    
T Consensus       262 ~~c~~L~~i~lp~~~~-~I~~~aF~~c~----------------------------------------------------  288 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVV-SIGTGAFMNCP----------------------------------------------------  288 (394)
T ss_dssp             TTCSSCCEEECCTTCC-EECTTTTTTCT----------------------------------------------------
T ss_pred             eecccccEEecccccc-eecCccccccc----------------------------------------------------
Confidence            6667777766654422 12223333322                                                    


Q ss_pred             cCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005          599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  678 (779)
Q Consensus       599 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  678 (779)
                       .|+.+++. +.++.....+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++
T Consensus       289 -~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          289 -ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             -TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             -ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence             46666664 3444455566777777777777654 55566667777777777777544 55556667777777777777


Q ss_pred             cCCcC
Q 004005          679 AYNNL  683 (779)
Q Consensus       679 ~~N~l  683 (779)
                      .++..
T Consensus       365 ~~~~~  369 (394)
T 4gt6_A          365 SGSRS  369 (394)
T ss_dssp             SSCHH
T ss_pred             CCcee
Confidence            76643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.5e-12  Score=120.34  Aligned_cols=109  Identities=20%  Similarity=0.228  Sum_probs=97.7

Q ss_pred             cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccC
Q 004005          601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  680 (779)
Q Consensus       601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  680 (779)
                      -+.+++++|++. .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999997 5777665  7999999999999988899999999999999999999987777789999999999999


Q ss_pred             CcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005          681 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       681 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      |+++...+..+..+.++..+.+.+|++.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99997777668889999999999999999985

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=2.3e-15  Score=143.36  Aligned_cols=154  Identities=25%  Similarity=0.315  Sum_probs=105.7

Q ss_pred             cCCCCccEEeccCccCCCccCc------cccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005          471 FNCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN  544 (779)
Q Consensus       471 ~~~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  544 (779)
                      .....++.++++.+.+.+..|.      .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++. +|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc
Confidence            3345566666666666655554      67778888888888888875 44 67777888888888887762 3322211


Q ss_pred             CcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCC
Q 004005          545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR  624 (779)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  624 (779)
                                                                           +++|++|++++|++++ +| .+..+++
T Consensus        92 -----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           92 -----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             -----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             -----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCC
Confidence                                                                 2367888888888875 34 5777788


Q ss_pred             CCEEECcccccccCCC-CCCCCCCCCCEEECCCCcCCCCCccc----------ccCCCCCcEEeccCCcCc
Q 004005          625 IQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLS  684 (779)
Q Consensus       625 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~l~~N~l~  684 (779)
                      |++|++++|++++..+ ..+..+++|++|++++|++.+..|..          +..+++|+.||  +|+++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888888874332 46777888888888888887655542          66778888776  66665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=1.6e-14  Score=137.39  Aligned_cols=138  Identities=23%  Similarity=0.241  Sum_probs=114.7

Q ss_pred             ccCCCCCCEEEccCCcccccccc------cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhc
Q 004005          494 VDGLSQLSHLILGHNNLEGEVSV------QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI  567 (779)
Q Consensus       494 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (779)
                      +.....++.++++.+.+.+..+.      .+..+++|++|++++|.+++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            44456777777888877776665      88999999999999999986 33 4433                       


Q ss_pred             ccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC
Q 004005          568 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  647 (779)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  647 (779)
                                                    +++|++|++++|+++ .+|..+..+++|++|++++|++++. | .+..++
T Consensus        69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence                                          347999999999998 6788888889999999999999964 4 688899


Q ss_pred             CCCEEECCCCcCCCCCc-ccccCCCCCcEEeccCCcCcccCCC
Q 004005          648 HVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       648 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      +|++|++++|++.+..+ ..+..+++|++|++++|++++.+|.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999999985443 5788999999999999999988775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=5.7e-12  Score=131.66  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=92.7

Q ss_pred             CcceEEccC-CcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005          600 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  678 (779)
Q Consensus       600 ~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  678 (779)
                      +|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            699999996 999988888999999999999999999999999999999999999999999977766776666 999999


Q ss_pred             cCCcCcccCC-CCccccccCCcccccCCCCCCCCC
Q 004005          679 AYNNLSGEIP-EWKAQFATFNESSYEGNTFLCGLP  712 (779)
Q Consensus       679 ~~N~l~~~~p-~~~~~~~~~~~~~~~~n~~~c~~~  712 (779)
                      ++|++.|.|+ .|+..+.......+..+.+.|..+
T Consensus       111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            9999999877 334444333444455566777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=1.1e-09  Score=115.81  Aligned_cols=144  Identities=11%  Similarity=0.095  Sum_probs=81.9

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+..++.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|..+.   
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~---  286 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS---  286 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT---
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc---
Confidence            555556666655433 33344455566666666666554 44344455666666666666433 3322333333322   


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                        +|+.+++.++.++.+...+|.++.+|+.+.
T Consensus       287 --------------------------------------------------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          287 --------------------------------------------------NLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             --------------------------------------------------TCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------ccccccccccccceehhhhhcCCCCCCEEE
Confidence                                                              566666666666655556677777777777


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  671 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  671 (779)
                      |..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+..
T Consensus       317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            7644 55555667777777777777544 5545555565543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.23  E-value=9.3e-10  Score=116.29  Aligned_cols=154  Identities=10%  Similarity=0.058  Sum_probs=91.3

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+..+..+.+..... .....++..+.+|+.+.+..+ ++.....++.++..|+.+.+..+ ++.....+|..+.   
T Consensus       190 ~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~---  263 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT---  263 (379)
T ss_dssp             CCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT---
T ss_pred             cccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee---
Confidence            34445555555543322 234455666677777777554 33344556667777777777654 3333333443332   


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                        .|+.+++..+ +......+|.++.+|+.+.
T Consensus       264 --------------------------------------------------~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          264 --------------------------------------------------ALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             --------------------------------------------------TCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------hhcccccccc-ceecccccccccccccccc
Confidence                                                              4566666443 4434455677777777777


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  681 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  681 (779)
                      +.++.++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            7777776666677777777777777644 55555567777777777766543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1.8e-11  Score=127.80  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=97.7

Q ss_pred             ceEEccCC-cccccCcccccCCCCCCEEECcc-cccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          602 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       602 ~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      ..++++++ +++ .+|. +..+++|++|+|++ |+++++.+..|.++++|+.|+|++|+|++..|..|..+++|++|||+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45789998 888 5788 99999999999996 99998888999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005          680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  713 (779)
Q Consensus       680 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  713 (779)
                      +|+|++..+..+..+. +..+.+.+|++.|+|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999977666665554 88999999999999964

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=7.4e-12  Score=130.84  Aligned_cols=135  Identities=19%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             CCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccC-----CCCCCCCEEEccCCcCCcc----CCcccc
Q 004005          305 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEGNRFVGE----IPQSLS  375 (779)
Q Consensus       305 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~  375 (779)
                      ++|+.|++++|.+.+.....+...+++|++|++++|.+.......+     ...++|++|++++|.++..    ++.++.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4555555555555433333333334455666666665543322222     1345566666666665432    222334


Q ss_pred             CCCCCCEEEccCCCCCCCc----CccccCCCCCcEEEccCCcccCC----cCcccCCCCCCcEEEccCCcCc
Q 004005          376 KCSSLEGLYLNNNSLLGKI----PRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNIS  439 (779)
Q Consensus       376 ~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~  439 (779)
                      .+++|++|++++|.+.+..    +..+...++|++|++++|.+++.    +...+...++|++|++++|.++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            5566666666666654321    23344455666666666665532    1222334556666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=4.5e-12  Score=132.51  Aligned_cols=136  Identities=20%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccc-----cCCCCCCEEEccCCcCccccchhh---hh
Q 004005          256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGEIPEHL---AV  327 (779)
Q Consensus       256 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~---~~  327 (779)
                      ++|++|++++|.+++.....+...+++|+.|++++|.++......+     ...++|++|++++|.++......+   ..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4666677776666533333333334566666666666654333222     234566666666666652211111   12


Q ss_pred             CCCCCCEEEccCcccCccC----cccCCCCCCCCEEEccCCcCCccC----CccccCCCCCCEEEccCCCCC
Q 004005          328 GCVNLQFLALSNNNLQGHL----FSRNFNLTNLQWLQLEGNRFVGEI----PQSLSKCSSLEGLYLNNNSLL  391 (779)
Q Consensus       328 ~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~  391 (779)
                      ..++|++|++++|.+.+..    ...+...++|++|++++|.++...    ..++...++|++|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3555666666666554322    223334455555555555554321    122333455555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=4.9e-09  Score=97.67  Aligned_cols=124  Identities=18%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             chHHhhcCCCCcEEeCCCc-ccCCCCCCcccccccCCCCCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccC
Q 004005           45 LQIISESMPSLKYLSLSYY-TLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTG  119 (779)
Q Consensus        45 ~~~l~~~l~~L~~L~Ls~~-~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  119 (779)
                      ...+. ..++|++|+|++| .+++.+...+.+++...++|++|+|++|.+.+.    +...+...++|++|+|++|.+.+
T Consensus        29 ~~~l~-~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQN-NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHT-TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHh-cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34455 7788888888888 886666666777777788888888888888654    34556667888888888888763


Q ss_pred             C----CCcccccCCCCCCEEEc--cCccccCcC---CcccccCCCCCcEEEccCCcccee
Q 004005          120 S----ISSSPLVHLTSIEELML--SNNYFQIPI---SLEPLFNYSRLKIFNAENNEIKAE  170 (779)
Q Consensus       120 ~----l~~~~l~~l~~L~~L~l--~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~  170 (779)
                      .    +.. .+...+.|++|++  ++|.+....   ....+...+.|++|++++|.+...
T Consensus       108 ~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          108 SGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            2    333 5677788888888  778776321   112455667888888888887643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=3e-08  Score=102.44  Aligned_cols=167  Identities=17%  Similarity=0.153  Sum_probs=80.8

Q ss_pred             cCCCCcEEeCCCcccCC-----CCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCccc
Q 004005           51 SMPSLKYLSLSYYTLGT-----NSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP  125 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~-----~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~  125 (779)
                      .+++|+.|.+.......     .....++..+..+++|+.|+|++|.-. .++. +. +++|++|++..|.+...... .
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~-~  212 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE-D  212 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH-H
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH-H
Confidence            56677777775443211     112234445566677777777666211 1222 32 67777777766655422111 1


Q ss_pred             c--cCCCCCCEEEccC--ccccCcCCc----ccc--cCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCC
Q 004005          126 L--VHLTSIEELMLSN--NYFQIPISL----EPL--FNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD  195 (779)
Q Consensus       126 l--~~l~~L~~L~l~~--n~~~~~~~~----~~l--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  195 (779)
                      +  ..+++|++|+|+.  +...+....    ..+  ..+++|++|++.+|.+.+.........                 
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-----------------  275 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-----------------  275 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-----------------
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-----------------
Confidence            2  2567777777642  111111000    011  235666777666666553221111111                 


Q ss_pred             CCCCchhhcCCCCccEEEccCccCcccCChhhh---hcCCCCcEEEcCCCcCcC
Q 004005          196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL---ENNTKLETLFLVNDSLAG  246 (779)
Q Consensus       196 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  246 (779)
                              ..+++|++|+|+.|.+.+..+..+.   ..+++|+.|++++|.+..
T Consensus       276 --------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          276 --------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             --------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             --------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence                    1234566666666655543332222   235666666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=1.3e-08  Score=105.28  Aligned_cols=162  Identities=16%  Similarity=0.143  Sum_probs=93.5

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc--CCCCCCEEEccCC--cCCCCCCcccccC
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC--ELNQLQLLDLSNN--NLHGPIPPCFDNT  545 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n--~l~~~~~~~~~~~  545 (779)
                      +..+|+|+.|++++|.-. ..+. +. +++|+.|++..|.+.......+.  .+++|+.|+|+.+  ...+..  .+..+
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l  242 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF  242 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence            456788888888877322 1222 33 68899999988887654444443  6889999888632  211100  00000


Q ss_pred             cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccc---cCC
Q 004005          546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI---GNL  622 (779)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l  622 (779)
                                                                  ........+++|+.|+|++|.+.+..+..+   ..+
T Consensus       243 --------------------------------------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~  278 (362)
T 2ra8_A          243 --------------------------------------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL  278 (362)
T ss_dssp             --------------------------------------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred             --------------------------------------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence                                                        000111224578888888888764333333   246


Q ss_pred             CCCCEEECcccccccC----CCCCCCCCCCCCEEECCCCcCCCCCcccccC-CCCCcEEeccCCc
Q 004005          623 TRIQTLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNN  682 (779)
Q Consensus       623 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~  682 (779)
                      ++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++...-..+.. +  ...+++++++
T Consensus       279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7788888888877652    2333455677888888888776433333332 2  2456666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=4.8e-09  Score=97.74  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=90.4

Q ss_pred             CCCCCCCCCEEeCCCC-cccccccccccccc----cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEec
Q 004005           14 GFPHFKSLEHFDMDFT-RIALNTSFIALNTS----FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYI   88 (779)
Q Consensus        14 ~~~~l~~L~~L~L~~~-~~~~~~~~~~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L   88 (779)
                      .+.+.+.|++|+|++| .         +...    +...+. ..++|++|+|++|.+++.+...+.+.+...+.|++|+|
T Consensus        31 ~l~~~~~L~~L~L~~n~~---------i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L  100 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMN---------IPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV  100 (185)
T ss_dssp             HHTTCTTCCEEECTTCTT---------CCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHhcCCCCCEEEecCCCC---------CCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence            4567888999999988 7         4432    334455 67889999999999877666677777888888999999


Q ss_pred             cCCCCCCC----cchhhcCCCCCCEEEc--CCCcccCC----CCcccccCCCCCCEEEccCcccc
Q 004005           89 ASNDLRGS----LPWCMANMTSLRILDV--SSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQ  143 (779)
Q Consensus        89 ~~~~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----l~~~~l~~l~~L~~L~l~~n~~~  143 (779)
                      ++|.+.+.    +..++...++|++|++  ++|.+...    +.. .+...++|++|++++|.+.
T Consensus       101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence            99988764    4566778888999999  77887632    333 5666788999999988775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=2.6e-07  Score=90.13  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             hcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCC--CCCEEEcCCCcccCCCCc----
Q 004005           50 ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMT--SLRILDVSSNQLTGSISS----  123 (779)
Q Consensus        50 ~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~l~~----  123 (779)
                      +.+++|+.|+|++|.++.+  ..+|..+..+++|++|+|++|.+.+.  ..+..+.  +|++|+|++|.+.+.+|.    
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence            3677888888888877432  24555666777788888887777654  2233333  777777777777655552    


Q ss_pred             --ccccCCCCCCEEE
Q 004005          124 --SPLVHLTSIEELM  136 (779)
Q Consensus       124 --~~l~~l~~L~~L~  136 (779)
                        ..+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence              1356667776664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=1.9e-06  Score=84.04  Aligned_cols=66  Identities=29%  Similarity=0.405  Sum_probs=33.1

Q ss_pred             CCCCCCEEECcccccccC--CCCCCCCCCCCCEEECCCCcCCCCCcccccCCC--CCcEEeccCCcCcccCC
Q 004005          621 NLTRIQTLNLSHNNLTGS--IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK--TLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       621 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p  688 (779)
                      ++++|+.|+|++|+|+++  +|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|++++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345555555555555542  223344555555555555555533  2222222  56666666666555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=2e-06  Score=77.40  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC-CCCCcchhhcCC----CCCCEEEcCCCc-ccCCCCcccc
Q 004005           53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND-LRGSLPWCMANM----TSLRILDVSSNQ-LTGSISSSPL  126 (779)
Q Consensus        53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~l~~~~l  126 (779)
                      ..|+.||+++|.+++.+..    .+..+++|++|+|++|. +++..-..++.+    ++|++|++++|. +++.--. .+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred             ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence            4688888888887554333    45678888888888884 666555566664    478888888875 5532111 46


Q ss_pred             cCCCCCCEEEccCcc
Q 004005          127 VHLTSIEELMLSNNY  141 (779)
Q Consensus       127 ~~l~~L~~L~l~~n~  141 (779)
                      .++++|++|+++++.
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            778888888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=4.1e-06  Score=75.39  Aligned_cols=93  Identities=12%  Similarity=0.075  Sum_probs=66.4

Q ss_pred             cccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCc-ccCCCCcccccCC----CCCCEEEccCcc-ccCc
Q 004005           72 TLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ-LTGSISSSPLVHL----TSIEELMLSNNY-FQIP  145 (779)
Q Consensus        72 ~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~l~~l----~~L~~L~l~~n~-~~~~  145 (779)
                      .+|.....-.+|++||+++|.+++..-..+.+|++|++|+|++|. +++.--. .+..+    ++|++|++++|. ++. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD-  129 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTD-  129 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCH-
Confidence            445433334689999999999988877888999999999999996 5421111 24443    469999999985 653 


Q ss_pred             CCcccccCCCCCcEEEccCCc
Q 004005          146 ISLEPLFNYSRLKIFNAENNE  166 (779)
Q Consensus       146 ~~~~~l~~l~~L~~L~l~~~~  166 (779)
                      .....+..+++|++|+++++.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            233456678888888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.75  E-value=2.3e-05  Score=67.42  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             EEECcccccc-cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCC
Q 004005          627 TLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGN  705 (779)
Q Consensus       627 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n  705 (779)
                      .++-+++.++ ..+|..+.  ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.|.+..  .++..|...    +
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l--~~l~~wl~~----~   83 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL--VPLRAWLAG----R   83 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG--HHHHHHHHT----S
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc--HHHHHHHHh----C
Confidence            5666666665 23343222  3578888888888877777888889999999999999987652  222222111    0


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          706 TFLCGLPLPICRSPATMPEASIGNEQDD  733 (779)
Q Consensus       706 ~~~c~~~l~~c~~~~~~~~~~~~~~~~~  733 (779)
                      +..-......|..|....++.+.+....
T Consensus        84 ~~~~~~~~~~C~~P~~l~g~~l~~l~~~  111 (130)
T 3rfe_A           84 PERAPYRDLRCVAPPALRGRLLPYLAED  111 (130)
T ss_dssp             SCSGGGTTCBCCBSTTTTTCBGGGCCHH
T ss_pred             cccccccCcEeCcChHHcCCCcccCCHH
Confidence            0000011124888888888766555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.73  E-value=9e-06  Score=74.68  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             cCCCCcEEeCCCc-ccCCCCCCcccccccCCCCCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccCC----C
Q 004005           51 SMPSLKYLSLSYY-TLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTGS----I  121 (779)
Q Consensus        51 ~l~~L~~L~Ls~~-~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----l  121 (779)
                      .-+.|+.|+|+++ .+++.+...+.+++..-+.|++|+|++|.+.+.    +.+++..-+.|++|+|++|++.+.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            5678888888875 787666667778888888888888888888654    445566778888888888887632    2


Q ss_pred             CcccccCCCCCCEEEccCcc---ccCc---CCcccccCCCCCcEEEccCCccc
Q 004005          122 SSSPLVHLTSIEELMLSNNY---FQIP---ISLEPLFNYSRLKIFNAENNEIK  168 (779)
Q Consensus       122 ~~~~l~~l~~L~~L~l~~n~---~~~~---~~~~~l~~l~~L~~L~l~~~~l~  168 (779)
                      .. ++..-+.|++|+++++.   +...   .-...+...+.|+.|+++.+.+.
T Consensus       119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            22 45556678888887653   2211   01124566678888888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=1.1e-05  Score=74.00  Aligned_cols=116  Identities=14%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             CCCCCCCEEeCCCC-ccccccccccccc----ccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccC
Q 004005           16 PHFKSLEHFDMDFT-RIALNTSFIALNT----SFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIAS   90 (779)
Q Consensus        16 ~~l~~L~~L~L~~~-~~~~~~~~~~~~~----~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~   90 (779)
                      .+-+.|++|+|+++ .         +..    .+.+.+. .-++|+.|+|++|.+++.+...+.+++..-+.|++|+|++
T Consensus        38 ~~n~~L~~L~L~~nn~---------igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKR---------VSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             TTCSSCCEEECTTCCS---------SCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             hcCCCccEEECCCCCC---------CCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            34567777777764 4         322    2344555 5567777777777777777777777777777777777777


Q ss_pred             CCCCCC----cchhhcCCCCCCEEEcCCC---cccC----CCCcccccCCCCCCEEEccCccc
Q 004005           91 NDLRGS----LPWCMANMTSLRILDVSSN---QLTG----SISSSPLVHLTSIEELMLSNNYF  142 (779)
Q Consensus        91 ~~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~----~l~~~~l~~l~~L~~L~l~~n~~  142 (779)
                      |.|++.    +.+++..-+.|++|+|++|   .+..    .+.. ++..-+.|++|+++.+.+
T Consensus       108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            777654    3344555667777777654   2221    1222 455566777777776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.31  E-value=0.00022  Score=61.17  Aligned_cols=62  Identities=16%  Similarity=0.258  Sum_probs=52.0

Q ss_pred             CEEECCCCcCC-CCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005          650 ESLDLSNNKLN-GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  713 (779)
Q Consensus       650 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l  713 (779)
                      ..++.+++.++ ..+|..+  ..+|+.|+|++|.|+...+..|..+..+..+.+.+|||.|+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            48999999997 3556432  34799999999999987778888899999999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	779
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.9 bits (219), Expect = 2e-19
 Identities = 70/377 (18%), Positives = 124/377 (32%), Gaps = 56/377 (14%)

Query: 80  LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 139
           L  +  L      ++ S+   +  + +L  ++ S+NQLT      PL +LT + +++++N
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 140 NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 199
           N       L  L N                 +    +L   +   NT+S  S        
Sbjct: 98  NQIADITPLANLTNL-TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 200 PKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 259
            +  +     +   L+++           + +       L N                  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL----------------E 200

Query: 260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 319
            L  +NN I    P+ I   L  L +  N +         +  ++  L  LDL+NN ++ 
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 255

Query: 320 EIPEHLAVGCVNLQFLALSNNNLQG--------------------HLFSRNFNLTNLQWL 359
             P     G   L  L L  N +                         S   NL NL +L
Sbjct: 256 LAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 419
            L  N      P  +S  + L+ L+  NN +       L NLT + ++   +N +    P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 420 VEFCQLDSLQILDISDN 436
                L  +  L ++D 
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.9 bits (219), Expect = 2e-19
 Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 41/392 (10%)

Query: 303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 362
            +       L   ++T  + +        +  L      ++         L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 422
            N+     P  L   + L  + +NNN +    P           +         P+    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 423 CQLDSLQIL-------------DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 469
                                  +   +    +       ++  +       +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529
               ++L +L  + N+++   P  +   + L  L L  N L+   +  L  L  L  LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDL 248

Query: 530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 589
           +NN +    P            S  +   E       I               E     +
Sbjct: 249 ANNQISNLAP-----------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 590 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 649
             I     L  L+ L L  N +    P  + +LT++Q L  ++N ++    S+ +NL ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681
             L   +N+++   P  L  L  +    +   
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 5e-18
 Identities = 63/397 (15%), Positives = 124/397 (31%), Gaps = 40/397 (10%)

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
             +   N+   +     D + +L      + ++DG        +  L  ++ SNN LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 380
            P         L  + ++NN +       N        L       +  +    +     
Sbjct: 82  TPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL- 137

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
               L++N++            +          L+    +   +   +    +SD ++  
Sbjct: 138 ---ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500
            L +         +  + N +            ++L  L L+ N+L       +  L+ L
Sbjct: 195 KLTNLES------LIATNNQISDITP---LGILTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ 560
           + L L +N +       L  L +L  L L  N +    P               ++    
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-----------GLTALTNL 290

Query: 561 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 620
                 +E        +N         NI+ I     L+ L  L  + NK+       + 
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 621 NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
           NLT I  L+  HN ++   P   +NL  +  L L++ 
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 64/382 (16%), Positives = 127/382 (33%), Gaps = 52/382 (13%)

Query: 7   NGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLG 66
            G+    G  +  +L   +    ++   T    L         +++  L  + ++   + 
Sbjct: 54  LGIKSIDGVEYLNNLTQINFSNNQL---TDITPL---------KNLTKLVDILMNNNQIA 101

Query: 67  TNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 126
             +       L  L          + L+         ++S  I                 
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI---------------SD 146

Query: 127 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
           +   S    +   ++      L+PL N + L+  +  +N++      +         L +
Sbjct: 147 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-----TNLES 201

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
           L  ++N               +L+ + L+  ++        L + T L  L L N+ ++ 
Sbjct: 202 LIATNNQISDITPL---GILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISN 255

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
               P+    +L +L +  N I    P+     L +L +  N +        S   N+K 
Sbjct: 256 L--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-----DISPISNLKN 308

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           L  L L  N+++   P         LQ L  +NN +     S   NLTN+ WL    N+ 
Sbjct: 309 LTYLTLYFNNISDISPVS---SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 367 VGEIPQSLSKCSSLEGLYLNNN 388
               P  L+  + +  L LN+ 
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 7e-08
 Identities = 48/315 (15%), Positives = 102/315 (32%), Gaps = 36/315 (11%)

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459
            L      ++   ++   +      LD +  L      I  S+    +  ++ Q++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS------HLILGHNNLEGE 513
            L          N + LV + ++ N++    P                   +        
Sbjct: 77  QLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 514 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGF 573
           ++      N +  +   +           +  T  +  +N ++ +        +      
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 574 LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 633
            +  N E    T   I+ I    +L+ L  L L+ N+L       + +LT +  L+L++N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 634 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIP--------------------HQLVELKTL 673
            ++   P   S L  +  L L  N+++   P                      +  LK L
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 674 EVFSVAYNNLSGEIP 688
              ++ +NN+S   P
Sbjct: 310 TYLTLYFNNISDISP 324

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 45/325 (13%), Positives = 98/325 (30%), Gaps = 30/325 (9%)

Query: 383 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 442
             L   ++   +     +L ++  +      ++    VE+    +L  ++ S+N ++   
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLTDIT 82

Query: 443 P--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500
           P  +    + I   +     +            +         + L          LS  
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ 560
           +   +   +    +           L  L+N      +    +  +     +  ++ +  
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 561 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 620
                 I          N +        +  I     L+ L+ LDL+ N++    P  + 
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 621 NLTRIQTLNLSHNNLTGSIP--------------------STFSNLKHVESLDLSNNKLN 660
            LT++  L L  N ++   P                    S  SNLK++  L L  N ++
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSG 685
              P  +  L  L+    A N +S 
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD 343

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 8e-19
 Identities = 47/299 (15%), Positives = 89/299 (29%), Gaps = 20/299 (6%)

Query: 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
           +  + ++P+ L        L L NN +         NL  L  +I+ NN +    P  F 
Sbjct: 19  DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 483
            L  L+ L +S N +   LP        +       +   +       N   +V L  + 
Sbjct: 77  PLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 484 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 543
            + +G       G+ +LS++ +   N+    ++       L  L L  N +         
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLK 192

Query: 544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603
                     S      F    +++           E+     K +           +  
Sbjct: 193 GLNNLAKLGLS------FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

Query: 604 LDLSCNKLIG------HIPPQIGNLTRIQTLNLSHNNLTGS--IPSTFSNLKHVESLDL 654
           + L  N +          P           ++L  N +      PSTF  +    ++ L
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 3e-17
 Identities = 49/287 (17%), Positives = 91/287 (31%), Gaps = 35/287 (12%)

Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 308
           ++P         LD+ NN I         + L +L+      N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN------------------ 350
            L LS N L  E+PE +      L+        ++  +F+                    
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 351 -----FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 405
                  +  L ++++        IPQ L    SL  L+L+ N +       L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-- 463
            + +  N +             L+ L +++N +            I+ V+L  N +    
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 464 ---QLKRGTFFNCSSLVTLDLSYNRLNGS--IPDWVDGLSQLSHLIL 505
                  G     +S   + L  N +      P     +   + + L
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 8/243 (3%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL  L L  N+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
               P + +    LE LYL+ N L     +    L  L+        +   +     Q+ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
            +++      +      +      +  + ++       +         SL  L L  N++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKI 183

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
                  + GL+ L+ L L  N++    +  L     L+ L L+NN L        D+  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 547 LHE 549
           +  
Sbjct: 244 IQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 7e-13
 Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 9/217 (4%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
                LDL  N++          L  L  LIL +N +          L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 534 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 593
           L   +P     T        +     +  +F  +      +E   + +     +N A+  
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQG 148

Query: 594 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 653
               +  LS + ++   +   IP   G    +  L+L  N +T    ++   L ++  L 
Sbjct: 149 ----MKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 654 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690
           LS N ++      L     L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 6e-12
 Identities = 58/287 (20%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
              +LD+ +N I+                         +K G F N  +L TL L  N++
Sbjct: 32  DTALLDLQNNKITE------------------------IKDGDFKNLKNLHTLILINNKI 67

Query: 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 546
           +   P     L +L  L L  N L+    +       LQ L +  N +       F+   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 547 LHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 606
                   ++P +   I          L          TT          +   L+ L L
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLTELHL 178

Query: 607 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 666
             NK+       +  L  +  L LS N+++     + +N  H+  L L+NNKL  K+P  
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 667 LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713
           L + K ++V  +  NN+S              + +      L   P+
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 43/284 (15%), Positives = 91/284 (32%), Gaps = 23/284 (8%)

Query: 41  NTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC 100
           +    ++  +  P    L L         +   D    +L +L  L + +N +    P  
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 101 MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ--IPISLEPLFNYSRLK 158
            A +  L  L +S NQL       P     +++EL +  N            L     ++
Sbjct: 75  FAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 159 IFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 218
           +          E      +     +L+ + ++                  L  + L   K
Sbjct: 131 LGTNPLKSSGIENGAFQGMK----KLSYIRIADTNITTIPQGLP----PSLTELHLDGNK 182

Query: 219 MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIG- 277
           +        L+    L  L L  +S++      + +   LR+L ++NN +          
Sbjct: 183 ITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 278 DVLPSLYVFNNSMNALDGS---IPSSFGNMKFLQILDLSNNHLT 318
             +  +Y+ NN+++A+  +    P           + L +N + 
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 602 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
               + C+ L +  +P  +        L+L +N +T      F NLK++ +L L NNK++
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 661 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESS 701
              P     L  LE   ++ N L     +            
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.6 bits (205), Expect = 4e-18
 Identities = 56/265 (21%), Positives = 94/265 (35%), Gaps = 12/265 (4%)

Query: 399 GNLTRLQYIIMPNNHLEG--PIPVEFCQLDSLQILDISD--NNISGSLPSCFHPLSIKQV 454
               R+  + +   +L    PIP     L  L  L I    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
           +++   + G           +LVTLD SYN L+G++P  +  L  L  +    N + G +
Sbjct: 107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 515 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574
                  ++L      + N      P             S +  E               
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 575 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 634
                    F       + +  +   L+GLDL  N++ G +P  +  L  + +LN+S NN
Sbjct: 226 IHLAKNSLAF------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 635 LTGSIPSTFSNLKHVESLDLSNNKL 659
           L G IP    NL+  +    +NNK 
Sbjct: 280 LCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.6 bits (197), Expect = 5e-17
 Identities = 54/292 (18%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 428 LQILDISDNNISG--SLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
           +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 485 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
            ++G+IPD++  +  L  L   +N L G +   +  L  L  +    N + G IP  + +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
               + +++ +    +             L   +                 K     +  
Sbjct: 172 F--SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN----TQK 225

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664
                  +     ++G    +  L+L +N + G++P   + LK + SL++S N L     
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL----- 280

Query: 665 HQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
                               GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 281 -------------------CGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 54/266 (20%), Positives = 95/266 (35%), Gaps = 7/266 (2%)

Query: 183 QLNTLSLSSNYGDGFI-FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 241
           ++N L LS          P  L +   L ++ +  I          +   T+L  L++ +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 242 DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF 301
            +++G     +   K L  LD S N + G +P  I  + P+L       N + G+IP S+
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY 169

Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
           G+   L      + +                      + N+     S  F          
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKIH 227

Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 421
                +      +    +L GL L NN + G +P+ L  L  L  + +  N+L G IP +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 422 FCQLDSLQILDISDNNI--SGSLPSC 445
              L    +   ++N       LP+C
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 6e-12
 Identities = 59/266 (22%), Positives = 91/266 (34%), Gaps = 53/266 (19%)

Query: 328 GCVNLQFLALSNNNLQG--HLFSRNFNLTNLQWLQLEGN-RFVGEIPQSLSKCSSLEGLY 384
               +  L LS  NL     + S   NL  L +L + G    VG IP +++K + L  LY
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444
           + + ++ G IP +L  +  L  +    N L G +P     L +L  +    N ISG++P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 445 -----------------------------------------------CFHPLSIKQVHLS 457
                                                                     + 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 517
                     G      +L  LDL  NR+ G++P  +  L  L  L +  NNL GE+  Q
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 518 LCELNQLQLLDLSNNNLH--GPIPPC 541
              L +  +   +NN      P+P C
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 37/266 (13%), Positives = 75/266 (28%), Gaps = 12/266 (4%)

Query: 79  SLVHLQELYIASNDLRG--SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
               +  L ++  +L     +P  +AN+  L  L +             +  LT +  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 137 LSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
           +++      I        + + +  + N             I+    L  ++   N   G
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----TLPPSISSLPNLVGITFDGNRISG 163

Query: 197 FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 256
            I   +                        +      L   F+            +    
Sbjct: 164 AIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316
                 +          +    +  +L   +   N + G++P     +KFL  L++S N+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 317 LTGEIPEHLAVGCVNLQFLALSNNNL 342
           L GEIP+            A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 68  NSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ-LTGS 120
              GTL QGL  L  L  L ++ N+L G +P    N+    +   ++N+ L GS
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 2e-17
 Identities = 50/276 (18%), Positives = 85/276 (30%), Gaps = 8/276 (2%)

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
                  ++  +PV I      +++  N    +     +SF   + L IL L +N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 380
                    +  Q     N  L+    +    L  L  L L+        P      ++L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
           + LYL +N+L         +L  L ++ +  N +       F  L SL  L +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500
             P  F  L               L         +L  L L+ N             + L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWL 250

Query: 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG 536
                  + +   +      L    L  L+ N+L G
Sbjct: 251 QKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 4e-17
 Identities = 56/279 (20%), Positives = 99/279 (35%), Gaps = 7/279 (2%)

Query: 235 ETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD 294
           E     +    G   +P+      +++ +  N I   +P        +L +     N L 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLA 69

Query: 295 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT 354
               ++F  +  L+ LDLS+N     +      G   L  L L    LQ         L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
            LQ+L L+ N        +     +L  L+L+ N +     R    L  L  +++  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHP-LSIKQVHLSKNMLHGQLKRGTFFNC 473
               P  F  L  L  L +  NN+S        P  +++ + L+ N      +    +  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-- 247

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 512
           + L     S + +  S+P  + G        L  N+L+G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 4e-14
 Identities = 54/294 (18%), Positives = 90/294 (30%), Gaps = 36/294 (12%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
            +P  +   ++ + ++L+ N +             L  + + +N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 429 QILDISDNNISGSL-PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           + LD+SDN    S+ P+ FH L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 547
               D    L  L+HL L  N +          L+ L  L L  N +    P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607
               +     +    +          L+                            L L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQY---------------------------LRLN 233

Query: 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661
            N  +            +Q    S + +  S+P   +         L+ N L G
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 5e-11
 Identities = 54/232 (23%), Positives = 82/232 (35%), Gaps = 7/232 (3%)

Query: 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 369
                  L   +P  +       Q + L  N +     +      NL  L L  N     
Sbjct: 16  TSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKI-PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
              + +  + LE L L++N+ L  + P     L RL  + +    L+   P  F  L +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 429 QILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
           Q L + DN +       F    ++  + L  N +   +    F    SL  L L  NR+ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA 190

Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 539
              P     L +L  L L  NNL    +  L  L  LQ L L++N       
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 46/288 (15%), Positives = 92/288 (31%), Gaps = 36/288 (12%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
            + + + +  N+++   ++S      ++  L L +N      +          ++  ++N
Sbjct: 32  AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
            ++                              + P   +    L  + L    +    P
Sbjct: 91  AQL----------------------------RSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
                    L+ L+L +++L             L  L +  N I   +P +    L SL 
Sbjct: 123 GL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD 180

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 344
                 N +    P +F ++  L  L L  N+L+  +P         LQ+L L++N    
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

Query: 345 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG 392
              +R      LQ  +   +     +PQ L+         L  N L G
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 58/316 (18%), Positives = 99/316 (31%), Gaps = 58/316 (18%)

Query: 377 CSSLEGLYLN-NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
           C +   +  +     L  +P  +   +  Q I +  N +       F    +L IL +  
Sbjct: 8   CYNEPKVTTSCPQQGLQAVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 436 NNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
           N ++    + F  L++ +   LS N     +   TF     L TL L    L    P   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 495 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 554
            GL+ L +L L  N L+        +L  L  L L  N +       F            
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------- 175

Query: 555 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 614
                                                      L  L  L L  N++   
Sbjct: 176 -------------------------------------------LHSLDRLLLHQNRVAHV 192

Query: 615 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 674
            P    +L R+ TL L  NNL+       + L+ ++ L L++N        + +    L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQ 251

Query: 675 VFSVAYNNLSGEIPEW 690
            F  + + +   +P+ 
Sbjct: 252 KFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 42/242 (17%), Positives = 71/242 (29%), Gaps = 7/242 (2%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
                VT       L  ++P  +   +    + L  N +    +        L +L L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N L       F    L E         +  ++          L + +    +        
Sbjct: 66  NVLARIDAAAFTGLALLEQLDL----SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVES 651
               + L+ L  L L  N L         +L  +  L L  N ++      F  L  ++ 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 652 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 711
           L L  N++    PH   +L  L    +  NNLS    E  A            N ++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 712 PL 713
             
Sbjct: 242 RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 35/262 (13%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ------------------------L 117
             Q +++  N +            +L IL + SN                          
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 118 TGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL 177
             S+  +    L  +  L L     Q  +        + L+    ++N ++A   ++   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT--- 148

Query: 178 IAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 237
                 L  L L  N         F    H L+ + L   ++    P+   +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 238 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 297
              N+  A P    +   + L+ L +++N            +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 298 PSSFGNMKFLQILDLSNNHLTG 319
           P          +  L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (157), Expect = 1e-11
 Identities = 59/447 (13%), Positives = 117/447 (26%), Gaps = 33/447 (7%)

Query: 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLS 313
           ++ LD+    +      ++  +L    V       L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 314 NNHLTGEIPEHLAVG----CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 369
           +N L       +  G       +Q L+L N  L G       +         E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 429
           +  +  +      L         ++     +    + +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 430 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489
                        P     L ++   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 490 IPDWVDGLSQLSHLIL-------GHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 542
                  L   S L               G++   L     L+ L L+ N L        
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 543 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG------- 595
             T L       S   +      +   H   +  QN  + E    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 596 --KVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS----- 644
             +  S+L  L L+   +       +   +     ++ L+LS+N L  +           
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 645 NLKHVESLDLSNNKLNGKIPHQLVELK 671
               +E L L +   + ++  +L  L+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 6e-09
 Identities = 50/447 (11%), Positives = 109/447 (24%), Gaps = 41/447 (9%)

Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLA 336
           + SL +    ++  D         ++  Q++ L +  LT    + ++        L  L 
Sbjct: 4   IQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 337 LSNNNLQGHLFSR-----NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 391
           L +N L                  +Q L L+     G     LS            +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL-- 119

Query: 392 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 451
                      +L    + +               S    +   + +          +S 
Sbjct: 120 -SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

Query: 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
             ++ +   +  Q  + +     +L          N      +         +   +N  
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 512 GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQ 571
           G+V +       L                             +    ++  +  +  G +
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 572 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK-------------------LI 612
           G        +         ++      +       S                      + 
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 613 GHIPPQIGNLTRIQTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 668
                     + ++ L L+  +++     S+ +T      +  LDLSNN L      QLV
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 669 E-----LKTLEVFSVAYNNLSGEIPEW 690
           E        LE   +     S E+ + 
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 58/448 (12%), Positives = 116/448 (25%), Gaps = 21/448 (4%)

Query: 106 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ---IPISLEPLFNYSRLKIFNA 162
            ++ LD+   +L+ +  +  L  L   + + L +              L     L   N 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 163 ENNEIKAEITES--HSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 220
            +NE+           L  P  ++  LSL +    G            L  +   H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 221 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVL 280
                              + D      +L +              ++    P      +
Sbjct: 123 LLGDAG------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 281 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 340
            +  +    +  L   +  S   ++ L++               +     +L+ LAL +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 341 NLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN 400
            L     +           +L           +   C  L  +     SL          
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460
                 ++       G                   +  S    + F        +  ++ 
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNG----SIPDWVDGLSQLSHLILGHNNLEGEVSV 516
              +L +G     S L  L L+   ++     S+   +     L  L L +N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 517 QLCE-----LNQLQLLDLSNNNLHGPIP 539
           QL E        L+ L L +      + 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 53/463 (11%), Positives = 110/463 (23%), Gaps = 31/463 (6%)

Query: 54  SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG----SLPWCMANMTSLRI 109
            ++ L +    L   S     + L  L   Q + +    L       +   +    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 110 LDVSSNQLTG----SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN 165
           L++ SN+L       +          I++L L N                 L      + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 166 EIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN 225
                      L+          L     +                      K      N
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 226 WLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYV 285
            + E   ++              +      + L+       +        I     SL  
Sbjct: 180 DINEAGVRVLC---------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 286 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 345
                N L     +            L    +          G +     A  +      
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 346 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 405
             +   +       +             +  CS       + +S+L +    L    ++ 
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL--QIS 348

Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG----SLPSCFHPL-SIKQVHLSKNM 460
              + +  +             L++L ++D ++S     SL +      S++++ LS N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 461 LHGQ----LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499
           L       L          L  L L     +  + D +  L +
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 298 PSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQGHLFSR----- 349
                    L++L L++  ++      LA   +   +L+ L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 350 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
                 L+ L L    +  E+         L+ L  +  SL
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 54/451 (11%), Positives = 107/451 (23%), Gaps = 26/451 (5%)

Query: 33  LNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND 92
           L+     L+ +    +   +   + + L    L       +   L     L EL + SN+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 93  LRGSLPWCMA-----NMTSLRILDVSSNQLTGSISS----------SPLVHLTSIEELML 137
           L      C+          ++ L + +  LTG+             +      S   L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 138 SNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 197
           +         L+P     +L++     +    E   S     P F+  T+S +     G 
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186

Query: 198 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKL--ETLFLVNDSLAGPFRLPIHSH 255
                       +   L          N            +L  +         + +   
Sbjct: 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 246

Query: 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
                   S           I                    +  +   +       L   
Sbjct: 247 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 306

Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 375
            L                  A  ++       +R      +   +LE             
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366

Query: 376 KCSSLEGLYLNNNSL----LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-----LD 426
             S L  L+L +  +       +   L     L+ + + NN L     ++  +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLS 457
            L+ L + D   S  +      L   +  L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 330 VNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRF----VGEIPQSLSKCSSLEGLY 384
           +++Q L +    L    ++     L   Q ++L+          +I  +L    +L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 385 LNNNSLLGKIPRWLGNL 401
           L +N L       +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 14/236 (5%)

Query: 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 367
           Q LDL+  +L  ++   L      +       + +   L   +F+   +Q + L  +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 59

Query: 368 GE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP--NNHLEGPIPVEFCQ 424
              +   LS+CS L+ L L    L   I   L   + L  + +   +   E  +      
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 425 LDSLQILDISDNNISGSLPSCFHPLSIKQVH-------LSKNMLHGQLKRGTFFNCSSLV 477
              L  L++S                + +           KN+    L        + + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEVSVQLCELNQLQLLDLSNN 532
                   L          L+ L HL L    ++  E  ++L E+  L+ L +   
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 45/290 (15%), Positives = 89/290 (30%), Gaps = 22/290 (7%)

Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
           LD++  N+   +  ++  +   +  F    + +D  +   F   + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSL 380
               +   C  LQ L+L    L   + +     +NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440
               LN +       + +          +   +L G          S             
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------- 168

Query: 441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY-NRLNGSIPDWVDGLSQ 499
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 169 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549
           L  L +     +G + +       L  L ++ ++      P   N    E
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 7e-10
 Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 9/271 (3%)

Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
             +L   +         +       + +   L   F P  ++ + LS +++      G  
Sbjct: 9   GKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530
             CS L  L L   RL+  I + +   S L  L L   +   E ++Q    +  +L +L+
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 531 NN----NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 586
            +         +     + +   +  N S   +  +        +      + ++ +   
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 587 KNIAYIYQGKVLSLLSGLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSN 645
                  +   L+ L  L LS C  +I     ++G +  ++TL +      G++      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247

Query: 646 LKHVESLDLSNNKLNGKIPHQLVELKTLEVF 676
           L H   L ++ +         +   K  E++
Sbjct: 248 LPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 12/256 (4%)

Query: 212 VDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH 271
           +DL+   ++ +    LL                         S  R++ +D+SN+ I   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 272 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLAVGCV 330
               I      L   +     L   I ++      L  L+LS     +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQ-------LEGNRFVGEIPQSLSKCSSLEGL 383
            L  L LS          +       + +         +  +            + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 384 YLNNNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSL 442
             ++  L     +    L  LQ++ +     +     +E  ++ +L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 443 PSCFHPLSIKQVHLSK 458
                 L   Q++ S 
Sbjct: 242 QLLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 10/231 (4%)

Query: 183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVND 242
            +       ++ D  +   F   +  ++++DLS+  +     + +L   +KL+ L L   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 243 SLAGPFRLPIHSHKRLRQLDV-SNNNIRGHIPVKIGDVLPSLYVFNN------SMNALDG 295
            L+ P    +  +  L +L++   +         +      L   N       +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
           ++      +  L +     N    ++   +      +      +  L+   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 356 LQWLQLEGNRFV-GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 405
           LQ L L     +  E    L +  +L+ L +      G +      L  LQ
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 11/231 (4%)

Query: 51  SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRIL 110
           S   ++++ LS   +  ++   L   L     LQ L +    L   +   +A  ++L  L
Sbjct: 44  SPFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 111 DVSSNQL---TGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 167
           ++S           +            L    ++ +  + +        +   N      
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 168 KAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL 227
             + ++  +L+     L  L LS +        +  +  + L+++ LS            
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 228 LENNTKLETLFLVN-DSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIG 277
           L     L+TL +           L     + L  L ++ ++        IG
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLK----EALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 36/273 (13%), Positives = 81/273 (29%), Gaps = 14/273 (5%)

Query: 58  LSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQL 117
           L L+   L  + +G L         +       + +   L    +    ++ +D+S++ +
Sbjct: 5   LDLTGKNLHPDVTGRL-----LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVI 58

Query: 118 TGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNE-IKAEITESHS 176
             S     L   + ++ L L       PI +  L   S L   N            ++  
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 177 LIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN---GEFPNWLLENNTK 233
               +     LS   ++ +  +     +    +  ++LS  + N    +    +      
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 234 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 293
           +      +  L             L+ L +S         +     +P+L          
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 294 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 326
           DG++      +  LQI   + +H T      + 
Sbjct: 238 DGTLQLLKEALPHLQI---NCSHFTTIARPTIG 267

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 20/205 (9%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             +S + ++     L  ++P  +      + L L  N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 532 NNLHGPIPPCF------DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFT 585
             L               + + ++  S          +                 +    
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 586 TKNIAYIYQGKVLSLLSGLD----------LSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635
                Y+   ++ +L  GL           L+ N L       +  L  + TL L  N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 636 TGSIPSTFSNLKHVESLDLSNNKLN 660
             +IP  F     +    L  N   
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 42/211 (19%), Positives = 63/211 (29%), Gaps = 8/211 (3%)

Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359
               +     ++    +LT  +P  L     +   L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 419
            L+                 + G    +++ L  +P     L  L  + +  N L     
Sbjct: 61  NLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 420 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479
                L  LQ L +  N +    P    P    +     N    +L  G      +L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
            L  N L  +IP    G   L    L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 44/179 (24%), Positives = 63/179 (35%), Gaps = 5/179 (2%)

Query: 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
            +P  L K      L+L+ N L       L   TRL  + +  +  E         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 429 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 547
             P  +    +L  L L +NNL    +  L  L  L  L L  N+L+      F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 41/231 (17%), Positives = 69/231 (29%), Gaps = 29/231 (12%)

Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
           +K+ +   VN        LP    K    L +S N +                       
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY---------------------- 44

Query: 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 351
                  ++      L  L+L    LT    +      + +      ++N    L     
Sbjct: 45  ---TFSLATLMPYTRLTQLNLDRAELTKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQ 97

Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
            L  L  L +  NR       +L     L+ LYL  N L    P  L    +L+ + + N
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 462
           N+L          L++L  L + +N++       F    +    L  N   
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 33/217 (15%), Positives = 53/217 (24%), Gaps = 17/217 (7%)

Query: 128 HLTSIEELMLSNNYFQ-IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
            + S  E+         +P  L          I +   N +      +   + P  +L  
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLAT---LMPYTRLTQ 59

Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAG 246
           L+L             L     L+        +              +    L +     
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----- 114

Query: 247 PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 306
              L         Q      N    +P  +    P L   + + N L          ++ 
Sbjct: 115 -LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
           L  L L  N L   IP+    G   L F  L  N   
Sbjct: 174 LDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 618 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 677
           ++  +     +N    NLT ++P      K    L LS N L       L+    L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 678 VAYNN 682
           +    
Sbjct: 62  LDRAE 66

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 7e-09
 Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             +  +  +L    +  ++    + L+ +  +I  +++++    +Q   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT----- 586
           N L    P              +   D                     +I          
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 587 -----KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 641
                 N                    +  I  I P +  LT++Q L LS N+++     
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR 194

Query: 642 TFSNLKHVESLDLSN 656
             + LK+++ L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 17/203 (8%)

Query: 303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 362
                   +L    +T  + +       ++  +  +N++++         L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 422
           GN+        L+    L  L       L +      +  +    +   +     I    
Sbjct: 77  GNK--------LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
             +   Q+  +   N   +  +    L+       ++     +        + L  L LS
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLS 186

Query: 483 YNRLNGSIPDWVDGLSQLSHLIL 505
            N +  S    + GL  L  L L
Sbjct: 187 KNHI--SDLRALAGLKNLDVLEL 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 54/320 (16%), Positives = 90/320 (28%), Gaps = 20/320 (6%)

Query: 377 CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436
                 L LNN  L   +P    +L  L   +   N L   +P     L SL + + +  
Sbjct: 37  DRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 437 NISGSLPSCFHPLSIKQVHLSKNMLHG------QLKRGTFFNCSSLVTLDLSYNRLNGSI 490
            +S   P   +             L                     +   L +     + 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550
            + +  L  L  L   + +      +    L+   ++  +N     P        T   +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 610
            +N                 +        E+ +  T           LS L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670
               I         ++ LN+S+N L   +P+    L+    L  S N L  ++P     L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNL 326

Query: 671 KTLEVFSVAYNNLSGEIPEW 690
           K L    V YN L  E P+ 
Sbjct: 327 KQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 58/345 (16%), Positives = 103/345 (29%), Gaps = 32/345 (9%)

Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
               L L+N  L     S      +L+ L    N    E+P+      SL+ L ++NN+L
Sbjct: 39  QAHELELNNLGLS----SLPELPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNL 90

Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
                        L+Y+ + NN LE    ++      +  +D +       LP     ++
Sbjct: 91  KALSDLP----PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
                L +      L   T     +     L    L+       + + +    +     L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 511 EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570
               +                  L    P            ++     +        E  
Sbjct: 207 TTIYADNNL-----------LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 630
              L +    ++     +        +   L  L++S NKLI  +P     L R   L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIA 311

Query: 631 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 675
           S N+L   +P    NLK    L +  N L  + P     ++ L +
Sbjct: 312 SFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 56/315 (17%), Positives = 95/315 (30%), Gaps = 23/315 (7%)

Query: 79  SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
              HL+ L  + N L   LP       SL+ L V +N L       PL+    +    L 
Sbjct: 56  LPPHLESLVASCNSLT-ELP---ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 139 NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIA------PKFQLNTLSLSSN 192
                   S   + +     +    +     E   + +               T   + N
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 171

Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 252
                +    L  +  +   ++       +   +L         L  + D       L +
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231

Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 312
             +      ++  +     +   I   L  L      +NA    I S       L+ L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ 372
           SNN L  E+P         L+ L  S N+L            NL+ L +E N    E P 
Sbjct: 292 SNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR-EFPD 341

Query: 373 SLSKCSSLEGLYLNN 387
                 S+E L +N+
Sbjct: 342 IP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 56/321 (17%), Positives = 98/321 (30%), Gaps = 18/321 (5%)

Query: 40  LNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSL--VHLQELYIAS-NDLRGS 96
           LN   L  + E  P L+ L  S      NS   L +   SL  + +    + + +DL   
Sbjct: 45  LNNLGLSSLPELPPHLESLVASC-----NSLTELPELPQSLKSLLVDNNNLKALSDLPPL 99

Query: 97  LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSR 156
           L +   +   L  L    N     I       L  + +L  S  +     +        +
Sbjct: 100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQ 159

Query: 157 LKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSH 216
              F          + +   L      +   +             FL   +    +  + 
Sbjct: 160 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 219

Query: 217 IKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKI 276
             +        + +N   +   L            I S       ++   N   +    +
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279

Query: 277 GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA 336
            D+ PSL   N S N L   +P+       L+ L  S NHL  E+PE       NL+ L 
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLH 330

Query: 337 LSNNNLQGHLFSRNFNLTNLQ 357
           +  N L+        ++ +L+
Sbjct: 331 VEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 51/346 (14%), Positives = 86/346 (24%), Gaps = 36/346 (10%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
                L++++  L+ S+   P      +E L+ S N       L  L     LK    +N
Sbjct: 38  RQAHELELNNLGLS-SLPELP----PHLESLVASCNSLT---ELPELP--QSLKSLLVDN 87

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
           N +KA       L       N L       +           + L+ +      +     
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
                             ++                L+           +     LP L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG 344
                 N L                 +   +                       +     
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP-----------------QSLTFLD 250

Query: 345 HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
              +    L+ L       N    EI        SLE L ++NN L+ ++P     L RL
Sbjct: 251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL 309

Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
              I   NHL   +P       +L+ L +  N +    P     + 
Sbjct: 310 ---IASFNHLAE-VPEL---PQNLKQLHVEYNPLR-EFPDIPESVE 347

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 102 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 161
             + +   +    + +T +++ +    L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 162 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 221
            ++N+I       +           L+  +         K +     L+ +    +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281
                 L   + L+ L+L  + +     L   ++ +   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339
            L       N +    P    ++  L  + L NN ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 18/211 (8%)

Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
              K+ +   +   T  +   + TL      +     + V  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 515 SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQ---------FEIFF 565
            ++         L  +       I       TL  + +  +              +    
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 566 SIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 625
            I          N +        ++ +     LS L+ L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 626 QTLNLSHNNLTGSIPSTFSNLKHVESLDLSN 656
             ++L +N ++   P   +N  ++  + L+N
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             ++ + +    + +  ++      L  ++ L      +     VQ   LN L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY 591
           N +    P            S +   +                  Q  ++      +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 592 IYQGKVLSLLSGLDLSCNKLIGHI---------PPQIGNLTRIQTLNLSHNNLTGSIPST 642
           +    +  + +   L+    + ++            + NL+++ TL    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 643 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678
            ++L ++  + L NN+++   P  L     L + ++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 3/163 (1%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
            IP           L L++N L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 415
           +Q LQL  N+      +       L+ L L +N +   +P    +L  L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 416 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 6/177 (3%)

Query: 375 SKCS-SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS-LQILD 432
           + C      +      L  +IPR +        +++ +N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 433 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N+++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 493 WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549
             + L+ L+ L L  N       +        +   L+        P    +  + +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKD 176

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 41/325 (12%), Positives = 90/325 (27%), Gaps = 31/325 (9%)

Query: 379 SLEGLYLNNNSL----LGKIPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQI 430
           S+EG  L  +++       +   L     ++ I++  N +       +         L+I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 431 LDISDN---NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
            + SD     +   +P     L    +   K                  +   LS +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL--------HGPIP 539
             +    +GL   +   +     E  V+ +      L+ +    N L             
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 540 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599
                 T+    +       +  +   +   Q        +       + A     K   
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 600 LLSGLDLSCNKLIGHIPPQIGN------LTRIQTLNLSHNNLTGSIPST-----FSNLKH 648
            L  L L+   L       + +         +QTL L +N +      T        +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 649 VESLDLSNNKLNGKIPHQLVELKTL 673
           +  L+L+ N+   +    + E++ +
Sbjct: 304 LLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 40/321 (12%), Positives = 90/321 (28%), Gaps = 24/321 (7%)

Query: 82  HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELMLS 138
            L+   I + D + S+   +    S++ + +S N +    +   S  +     +E    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 139 NNYFQIPISLEP---------LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSL 189
           + +        P         L    +L      +N       E       K        
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 190 SSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFR 249
             N G G      +        V+                N  +  ++     +      
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 250 LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 309
           L      +         ++         ++       N   +    ++  +  +   L+ 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 310 LDLSNNHLTGEIPEHLA-----VGCVNLQFLALSNNNLQGHLFSR-----NFNLTNLQWL 359
           L L++  L+      +      +  + LQ L L  N ++           +  + +L +L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 360 QLEGNRFVGEIPQSLSKCSSL 380
           +L GNRF  E    + +   +
Sbjct: 308 ELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 38/311 (12%), Positives = 86/311 (27%), Gaps = 22/311 (7%)

Query: 54  SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG----SLPWCMANMTSLRI 109
           S++  SL    + T    ++   L     ++E+ ++ N +       L   +A+   L I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 110 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPI-------SLEPLFNYSRLKIFNA 162
            + S           P      ++ L+       + +       + +        K    
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 163 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 222
           E+  +        +       L  L+++    +       +  ++ LE   +       +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 223 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVLP 281
               L         +            L      K L   D +  ++            P
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 282 SLYVFNNSMNALDGSIPSSFGNM------KFLQILDLSNNHLTGE----IPEHLAVGCVN 331
           +L     +   L     ++  +         LQ L L  N +  +    +   +     +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 332 LQFLALSNNNL 342
           L FL L+ N  
Sbjct: 304 LLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 40/293 (13%), Positives = 78/293 (26%), Gaps = 54/293 (18%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG---CVNLQFLALSNNNL---------- 342
           S+ +       ++ + LS N +  E    L+       +L+    S+             
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS-----------------LSKCSSLEGLYL 385
              L         L  ++L  N F     +                   +      G  +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-------------LDSLQILD 432
                   + +   N   L+ II   N LE     E+ +             + +    +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 433 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 492
             ++ +   L  C     +     +   L          +  +L  L L+   L+     
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 493 WV------DGLSQLSHLILGHNNLEGEVSVQLCE-----LNQLQLLDLSNNNL 534
            V           L  L L +N +E +    L       +  L  L+L+ N  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 383 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 442
           L+L +  L   +   L  L  + ++ + +N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 443 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL---NGSIPDWVDGLSQ 499
               +   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 500 LSHLI 504
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS---------------------T 642
           L L+   L   +   +  L  +  L+LSHN L    P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 643 FSNLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE 686
            +NL  ++ L L NN+L        LV    L + ++  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 429 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHG 536
                     Q   L+L +N L+   ++Q L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
           ++      +  +  LDLS+N L    P   A+ C+ +    L  ++          NL  
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV----LQASDNALENVDGVANLPR 66

Query: 356 LQWLQLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSL------LGKIPRWLGNLTRL 404
           LQ L L  NR       Q L  C  L  L L  NSL        ++   L +++ +
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
            +     +  LD+S+N +R   P      L  L V   S N           N+  LQ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDN--ALENVDGVANLPRLQEL 70

Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360
            L NN L         V C  L  L L  N+L      +      L  + 
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 32/154 (20%), Positives = 48/154 (31%), Gaps = 38/154 (24%)

Query: 503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFE 562
           L L H +L   V   L +L  +  LDLS+N L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----------------------- 37

Query: 563 IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ-IGN 621
                         +  E+ + +   +  +     L  L  L L  N+L      Q + +
Sbjct: 38  ---------ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 88

Query: 622 LTRIQTLNLSHNNLT---GSIPSTFSNLKHVESL 652
             R+  LNL  N+L    G        L  V S+
Sbjct: 89  CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 6e-07
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358
           + + N    + LDL    +   + E+L         +  S+N +          L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG----KIPRWLGNLTRLQYIIMPNNHL 414
           L +  NR              L  L L NNSL+          L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 415 EGPIPVEFCQLDSLQILD 432
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 3/127 (2%)

Query: 617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 676
            Q  N  R + L+L    +   I +  + L   +++D S+N++          L+ L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 677 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLI 736
            V  N +               E     N+ +    L    S  ++    I      N  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 737 DMDSFFI 743
               + I
Sbjct: 129 HYRLYVI 135

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459
           N  R + + +    +   I      LD    +D SDN I   L        +K + ++ N
Sbjct: 16  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 73

Query: 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN---LEGEVSV 516
            +    +            +  + + +     D +  L  L++L +  N     +     
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 517 QLCELNQLQLLDLS 530
            + ++ Q+++LD  
Sbjct: 134 VIYKVPQVRVLDFQ 147

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 8/234 (3%)

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 486
           S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 487 NGSIPDWVDGLSQLSHLILGH--NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544
              I   V       H I     NNL          L  LQ L +SN  +         +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604
           +          + +       S  G                  +       ++  L    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
           + +  +L   +       +    L++S   +         NLK + +    N K
Sbjct: 186 NNNLEELPNDV---FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 25/211 (11%), Positives = 48/211 (22%), Gaps = 3/211 (1%)

Query: 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNN 533
            + + L     +L         G   L  + +  N++   +   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 534 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 593
            +           L        S     +    +       +             I    
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 594 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLD 653
              +      L L+ N +              +     +NNL       F        LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 654 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
           +S  +++    + L  LK L   S    NL 
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 32/228 (14%), Positives = 73/228 (32%), Gaps = 11/228 (4%)

Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 346
            + +  +   +P +         L      L        +      +     N+ L+   
Sbjct: 17  ESKVTEIPSDLPRN------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70

Query: 347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQY 406
                NL  L  +++E    +  I     +        L +N+ +  +P      +  + 
Sbjct: 71  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 407 IIMPNNHLEGPIPVEFCQLDSLQI---LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 463
           ++   +++          +        L ++ N I       F+   + +++LS N    
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
           +L    F   S  V LD+S  R++      ++ L +L        NL+
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 27/211 (12%), Positives = 58/211 (27%), Gaps = 4/211 (1%)

Query: 105 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAEN 164
            +   L     +L   I          +E++ +S N     I  +   N  +L     E 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 165 NEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 224
                 I            L  L +S+           ++    +      +I ++    
Sbjct: 88  ANNLLYINPEA--FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 225 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284
           N  +  + +   L+L  + +        +  +        NNN    +P  +        
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPV 204

Query: 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
           + + S   +         N+K L+     N 
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL 659
            SGL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713
               P        L   ++++N L   +     Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMPNN 412
                L+   +  + +    L    +L  LY+ N   L  +    L  L  L+ + +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 413 HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 472
            L    P  F     L  L++S N +          LS++++ LS N LH          
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLS 501
                   +   +L       +  +   S
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 19/119 (15%), Positives = 31/119 (26%)

Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
                    + L  L + N      +      G   L+ L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
           L  L L  N       +++   S  E +   N        RWL          +P   L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 1/147 (0%)

Query: 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 366
              L  + +    +   HL       +    +  +LQ         L  L+ L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 367 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 426
               P +      L  L L+ N+L     + +  L+  + ++  N            + +
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 427 SLQILDISDNNISGSLPSCFHPLSIKQ 453
              +  + +  +          +    
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531
             +  +   L    +  ++      L Q++ L      ++    V+   LN L  ++ SN
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 532 NNLHGPIP-----------PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 580
           N L    P              +        +N ++          I          N  
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP 640
             E ++  I+ I     L+ L  L+ S N++    P  + NLT ++ L++S N ++    
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--I 187

Query: 641 STFSNLKHVESL 652
           S  + L ++ESL
Sbjct: 188 SVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 5/161 (3%)

Query: 352 NLTNLQWLQLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410
             T  + ++L G    + ++  +LS   + + L L+ N+ + KI   L  +  L+ + + 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLG 78

Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
            N            +           N   SL      ++++ +++S N +    +    
Sbjct: 79  RNL--IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
                L  L L+ N L     +          ++    NL+
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	779
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.48

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.1e-28  Score=252.48  Aligned_cols=259  Identities=35%  Similarity=0.602  Sum_probs=214.2

Q ss_pred             CCCEEEccCCCCCC--CcCccccCCCCCcEEEccC-CcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEE
Q 004005          379 SLEGLYLNNNSLLG--KIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH  455 (779)
Q Consensus       379 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  455 (779)
                      .++.|+++++.+.+  .+|..++++++|++|++++ |.+++.+|..+.++++|++|++++|++.+..+            
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~------------  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc------------
Confidence            46667777766655  3566777777777777765 66777777777777788888877777664322            


Q ss_pred             ccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCC-CEEEccCCcC
Q 004005          456 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL-QLLDLSNNNL  534 (779)
Q Consensus       456 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l  534 (779)
                                 . .+..++.|+.+++++|.+.+.+|..+..++.|+.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       119 -----------~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         119 -----------D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -----------G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -----------c-cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                       2 25667888888888888888888888888999999999999888888888877776 7889999988


Q ss_pred             CCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCccccc
Q 004005          535 HGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH  614 (779)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  614 (779)
                      ++..|..+....                                                      ...++++++...+.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             cccccccccccc------------------------------------------------------cccccccccccccc
Confidence            877776665443                                                      55799999999999


Q ss_pred             CcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcccc
Q 004005          615 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF  694 (779)
Q Consensus       615 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  694 (779)
                      +|..+..+++|+.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|+.|..+++|++||+++|+++|.+|.. ..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccC
Confidence            99999999999999999999996654 6889999999999999999999999999999999999999999999974 788


Q ss_pred             ccCCcccccCCCCCCCCCCCCCC
Q 004005          695 ATFNESSYEGNTFLCGLPLPICR  717 (779)
Q Consensus       695 ~~~~~~~~~~n~~~c~~~l~~c~  717 (779)
                      +++..+++.||+.+|+.|+|.|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHhCCCccccCCCCCCCC
Confidence            99999999999999999998884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.8e-25  Score=236.27  Aligned_cols=342  Identities=23%  Similarity=0.300  Sum_probs=195.3

Q ss_pred             cCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCE
Q 004005          230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  309 (779)
Q Consensus       230 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  309 (779)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|.++ .++.  ...+++|++|++++|.+.+..  .++.+++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccc
Confidence            344555666665555432  23445555666666665555 2321  222455555555555554322  2555566666


Q ss_pred             EEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCC
Q 004005          310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS  389 (779)
Q Consensus       310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  389 (779)
                      |+++++.+. .++...  ....+.......+.+.....................     .....+...+.........|.
T Consensus       115 L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccc--cccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccc
Confidence            666665554 222211  234444555544444332222111111111111111     111122333333344443333


Q ss_pred             CCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCccc
Q 004005          390 LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT  469 (779)
Q Consensus       390 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  469 (779)
                      ..  ....+..+++++.+++++|.+++..+  +..+++|+.|++++|.++                       . ++  .
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------------~-~~--~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------------------C-cc--h
Confidence            22  22334445555555555555554332  233445555555555443                       2 11  2


Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..  .+..++.++.+++++|.+++..  .+.      
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~------  304 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS------  304 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG------
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccc------
Confidence            5667888888888888875433  677888888888888887543  3677888888888888776421  121      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                     .++.++.|++++|++++. + .+..+++|++|+
T Consensus       305 -----------------------------------------------~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~  335 (384)
T d2omza2         305 -----------------------------------------------NLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLF  335 (384)
T ss_dssp             -----------------------------------------------GCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEE
T ss_pred             -----------------------------------------------hhcccCeEECCCCCCCCC-c-ccccCCCCCEEE
Confidence                                                           234688899999988864 2 378888999999


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  681 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  681 (779)
                      +++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999884 33 58889999999999999986654  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=8.1e-25  Score=231.28  Aligned_cols=342  Identities=24%  Similarity=0.302  Sum_probs=214.8

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT  130 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~  130 (779)
                      .+.+|++|+++++.++     .+ +.+..+++|++|++++|++++..  .++++++|++|++++|++. .++.  +++++
T Consensus        42 ~l~~l~~L~l~~~~I~-----~l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~  110 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-----SI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLT  110 (384)
T ss_dssp             HHTTCCEEECCSSCCC-----CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred             HhCCCCEEECCCCCCC-----Cc-cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc--ccccc
Confidence            5568888888888883     33 35778888888888888887543  3888888888888888887 5554  88888


Q ss_pred             CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005          131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE  210 (779)
Q Consensus       131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  210 (779)
                      +|+.|+++++.+++..   .......+.......+.+........   ........... .     ......+...+...
T Consensus       111 ~L~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-~-----~~~~~~~~~~~~~~  178 (384)
T d2omza2         111 NLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISALSG---LTSLQQLSFGN-Q-----VTDLKPLANLTTLE  178 (384)
T ss_dssp             TCCEEECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCCGGGTT---CTTCSEEEEEE-S-----CCCCGGGTTCTTCC
T ss_pred             cccccccccccccccc---cccccccccccccccccccccccccc---ccccccccccc-c-----cchhhhhccccccc
Confidence            8888888888776432   23444555666555554433211110   00001111111 0     01112233334444


Q ss_pred             EEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC
Q 004005          211 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM  290 (779)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~  290 (779)
                      ......+...  .... ...+++++.+++++|.+.+..  +...+++|++|++++|.++ .++ .+ ..+++|+.+++++
T Consensus       179 ~~~~~~~~~~--~~~~-~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l~~  250 (384)
T d2omza2         179 RLDISSNKVS--DISV-LAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK-DIG-TL-ASLTNLTDLDLAN  250 (384)
T ss_dssp             EEECCSSCCC--CCGG-GGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCS
T ss_pred             cccccccccc--cccc-cccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCC-Ccc-hh-hcccccchhcccc
Confidence            4444444332  1222 256777777777777776543  2455667777777777776 333 22 2366777777777


Q ss_pred             CCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccC
Q 004005          291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI  370 (779)
Q Consensus       291 n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  370 (779)
                      |.+++..  .+..+++|++|+++++.+. .++.  +..++.++.+.++.|.+.+.  ..+..+++++.|++++|++.+..
T Consensus       251 n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~  323 (384)
T d2omza2         251 NQISNLA--PLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS  323 (384)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG
T ss_pred             CccCCCC--cccccccCCEeeccCcccC-CCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc
Confidence            7776533  2667777778887777776 3432  23467777777777777642  33566777777777777777543


Q ss_pred             CccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC
Q 004005          371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN  436 (779)
Q Consensus       371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  436 (779)
                        .+..+++|++|++++|.+++. + .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       324 --~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 --PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             --GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             --ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence              366777777777777777642 2 46777777777777777776543  667777777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.6e-26  Score=236.39  Aligned_cols=252  Identities=31%  Similarity=0.495  Sum_probs=176.8

Q ss_pred             CCCCEEEccCCcCCc--cCCccccCCCCCCEEEccC-CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcE
Q 004005          354 TNLQWLQLEGNRFVG--EIPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI  430 (779)
Q Consensus       354 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  430 (779)
                      .+++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            357777777777766  3567777888888888875 6777777777888888888888888887777777777788888


Q ss_pred             EEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCC-CEEEccCCc
Q 004005          431 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL-SHLILGHNN  509 (779)
Q Consensus       431 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~L~~n~  509 (779)
                      +++++|.+.+..|                       .. +.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|+
T Consensus       130 l~l~~N~~~~~~p-----------------------~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         130 LDFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             cccccccccccCc-----------------------hh-hccCcccceeecccccccccccccccccccccccccccccc
Confidence            8887776654333                       22 5566667777777777766666666666554 667777777


Q ss_pred             ccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccc
Q 004005          510 LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI  589 (779)
Q Consensus       510 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (779)
                      +++..+..+..+.. ..++++++...+.+|..+...+                                           
T Consensus       186 l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~-------------------------------------------  221 (313)
T d1ogqa_         186 LTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK-------------------------------------------  221 (313)
T ss_dssp             EEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS-------------------------------------------
T ss_pred             cccccccccccccc-cccccccccccccccccccccc-------------------------------------------
Confidence            77666666655543 3577777766665555444332                                           


Q ss_pred             eeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccC
Q 004005          590 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE  669 (779)
Q Consensus       590 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  669 (779)
                                .++.+++++|.+.+.+ ..+..+++|+.|+|++|++++.+|..|+++++|++|+|++|++++.+|. +..
T Consensus       222 ----------~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~  289 (313)
T d1ogqa_         222 ----------NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             ----------CCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             ----------cccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-ccc
Confidence                      5777777777776543 3567777788888888888777777777788888888888888777774 466


Q ss_pred             CCCCcEEeccCCcCcc
Q 004005          670 LKTLEVFSVAYNNLSG  685 (779)
Q Consensus       670 l~~L~~L~l~~N~l~~  685 (779)
                      +++|+.+++++|+..|
T Consensus       290 L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGGSCGGGTCSSSEEE
T ss_pred             CCCCCHHHhCCCcccc
Confidence            7777778888887443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7.7e-24  Score=215.42  Aligned_cols=201  Identities=24%  Similarity=0.292  Sum_probs=111.1

Q ss_pred             CCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEcc
Q 004005          307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN  386 (779)
Q Consensus       307 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  386 (779)
                      ++.++-++..++ ++|..+   .+++++|++++|+++...+..|.++++|++|++++|.+....|.+|.+++.|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344555555554 455433   2456666666666655555556666666666666666665555566666666666666


Q ss_pred             CCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccC
Q 004005          387 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK  466 (779)
Q Consensus       387 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~  466 (779)
                      +|+++.. |..  ....++.|.+.+|.+....+..+.....+..++...+....                      ....
T Consensus        88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~~  142 (305)
T d1xkua_          88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE  142 (305)
T ss_dssp             SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred             CCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cCCC
Confidence            6666532 222  12455666666666655544455555566666665553321                      0111


Q ss_pred             cccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005          467 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP  539 (779)
Q Consensus       467 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  539 (779)
                      ...|..+++|+.+++++|.+.. +|..  .+++|+.|++++|..++..+..+..++.++.|++++|.+.+..+
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc
Confidence            2235566677777777776653 3322  23566666666666665555555555555555555555544333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-24  Score=216.64  Aligned_cols=264  Identities=20%  Similarity=0.217  Sum_probs=190.6

Q ss_pred             EEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccc
Q 004005          383 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH  462 (779)
Q Consensus       383 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~  462 (779)
                      ++.+++.++ .+|..+.  +++++|++++|+++++.+..|.++++|++|++++|++....                    
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~--------------------   72 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--------------------   72 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc--------------------
Confidence            344444444 3343332  45666777777666555556667777777777776665332                    


Q ss_pred             cccCcccccCCCCccEEecc-CccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcc
Q 004005          463 GQLKRGTFFNCSSLVTLDLS-YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC  541 (779)
Q Consensus       463 ~~~~~~~~~~~~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  541 (779)
                          ...+.+++.++.++.. .+.+....+..|.++++|+.|++++|.+....+..+...++|+.+++++|++++..+..
T Consensus        73 ----~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          73 ----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             ----TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ----cccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence                2235555666666554 44555556777788888888888888887666667777888888888888888766666


Q ss_pred             cccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccC
Q 004005          542 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN  621 (779)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~  621 (779)
                      |+..+                                                     +|+.|++++|++.+..+..|.+
T Consensus       149 f~~~~-----------------------------------------------------~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         149 FRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTTTT
T ss_pred             hcccc-----------------------------------------------------chhhcccccCcccccchhhhcc
Confidence            65543                                                     6889999999999888889999


Q ss_pred             CCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc-cCCcc
Q 004005          622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA-TFNES  700 (779)
Q Consensus       622 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~~~~~  700 (779)
                      +++|+++++++|++++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|++.|.|+.  .++. ++...
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~--~~l~~~l~~~  253 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA--RPLWAWLQKF  253 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG--HHHHHHHHHC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc--hHHHHHHHhC
Confidence            99999999999999999999999999999999999999998889999999999999999999998874  2222 12222


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 004005          701 SYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNL  735 (779)
Q Consensus       701 ~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~~~~  735 (779)
                      ....+..       .|..|....++.+.+..+.++
T Consensus       254 ~~~~~~~-------~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         254 RGSSSEV-------PCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             CSEECCC-------BEEESGGGTTCBGGGSCGGGS
T ss_pred             cCCCCce-------EeCCchHHcCCccccCCHHHC
Confidence            2222222       366677777766666655554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.9e-23  Score=211.11  Aligned_cols=246  Identities=20%  Similarity=0.282  Sum_probs=161.5

Q ss_pred             CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005          379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK  458 (779)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  458 (779)
                      ++++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++.....  ....++.|.+.+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhccc
Confidence            344444444444433333444444444444444444444444444444444444444444432221  122344444444


Q ss_pred             cccccccCcccccCCCCccEEeccCccCC--CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCC
Q 004005          459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLN--GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG  536 (779)
Q Consensus       459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  536 (779)
                      |.+. .++...+.....+..++...+...  ...+..+..+++|+.+++++|.++. .+..  .+++|+.|++++|...+
T Consensus       110 n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         110 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             SCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCE
T ss_pred             cchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCC
Confidence            4442 233334666677788888777543  2345567888899999999998874 3333  35789999999998877


Q ss_pred             CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc
Q 004005          537 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP  616 (779)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  616 (779)
                      ..+..|...+                                                     .+++|++++|++.+..+
T Consensus       186 ~~~~~~~~~~-----------------------------------------------------~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         186 VDAASLKGLN-----------------------------------------------------NLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             ECTGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred             CChhHhhccc-----------------------------------------------------ccccccccccccccccc
Confidence            6666665443                                                     68889999999998888


Q ss_pred             ccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccc------cCCCCCcEEeccCCcCc
Q 004005          617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL------VELKTLEVFSVAYNNLS  684 (779)
Q Consensus       617 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~  684 (779)
                      ..+.++++|++|+|++|+|+ .+|.+|..+++|++|+|++|+|+.+....|      ..+.+|+.|++++|+++
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            88899999999999999998 567789999999999999999986544444      34678899999999886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-23  Score=209.34  Aligned_cols=236  Identities=23%  Similarity=0.260  Sum_probs=153.6

Q ss_pred             CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC-cCccCCCCccCcccccEEEcc
Q 004005          379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN-NISGSLPSCFHPLSIKQVHLS  457 (779)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L~l~  457 (779)
                      .+++|++++|.++...+..|.++++|++|++++|++..+.+..+..++.++.+.+..+ .+.                  
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~------------------   94 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR------------------   94 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC------------------
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc------------------
Confidence            4555666666555444445556666666666666665555555555666666555432 222                  


Q ss_pred             CcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC
Q 004005          458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP  537 (779)
Q Consensus       458 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  537 (779)
                            .++...|.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|++++.
T Consensus        95 ------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          95 ------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ------cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence                  12222356666666677766666655555566666777777777777665566666777777777777777665


Q ss_pred             CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcc
Q 004005          538 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP  617 (779)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  617 (779)
                      .+.+|..++                                                     +|+++++++|++++..|.
T Consensus       169 ~~~~f~~l~-----------------------------------------------------~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         169 PERAFRGLH-----------------------------------------------------SLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             CTTTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTT
T ss_pred             chhhhcccc-----------------------------------------------------ccchhhhhhccccccChh
Confidence            565555433                                                     677788888888777788


Q ss_pred             cccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcc
Q 004005          618 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKA  692 (779)
Q Consensus       618 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~  692 (779)
                      .|.++++|++|++++|++.+..+..|+.+++|++|++++|++.+.-+.. .-...++.+....++++|..|..+.
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence            8888888888888888888777778888888888888888887644321 1112345556677788888776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.1e-22  Score=196.24  Aligned_cols=181  Identities=25%  Similarity=0.268  Sum_probs=146.9

Q ss_pred             cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005          450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL  529 (779)
Q Consensus       450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  529 (779)
                      +++.|++++|.+. .++..+|.++++|++|++++|+++.. + .+..+++|+.|++++|++++ .+..+..+++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc-c-cccccccccccccccccccc-cccccccccccccccc
Confidence            4455555555543 34445588899999999999998843 3 35678999999999999884 4567888999999999


Q ss_pred             cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005          530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN  609 (779)
Q Consensus       530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  609 (779)
                      ++|.+.+..+..+..+                                                     .++++|++++|
T Consensus       108 ~~~~~~~~~~~~~~~l-----------------------------------------------------~~l~~L~l~~n  134 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGL-----------------------------------------------------GELQELYLKGN  134 (266)
T ss_dssp             CSSCCCCCCSSTTTTC-----------------------------------------------------TTCCEEECTTS
T ss_pred             cccccceeeccccccc-----------------------------------------------------ccccccccccc
Confidence            9998876665555443                                                     36889999999


Q ss_pred             cccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005          610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  688 (779)
Q Consensus       610 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  688 (779)
                      .+....+..+..+++|+.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++.|.|.
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            998777777888999999999999999888888999999999999999998 778888889999999999999998765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-22  Score=197.71  Aligned_cols=200  Identities=27%  Similarity=0.255  Sum_probs=170.1

Q ss_pred             EEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 004005          453 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN  532 (779)
Q Consensus       453 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  532 (779)
                      +++.+++.++ .+|.. +.  +++++|+|++|.|++..+..|.++++|++|+|++|+++.. + .+..+++|+.|++++|
T Consensus        14 ~v~C~~~~L~-~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             EEECTTSCCS-SCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSS
T ss_pred             EEEccCCCCC-eeCcC-cC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccccc
Confidence            3444444443 34543 32  5799999999999987778899999999999999999843 3 4578999999999999


Q ss_pred             cCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCccc
Q 004005          533 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  612 (779)
Q Consensus       533 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  612 (779)
                      ++++. +..+..                                                     ++.|+.|++++|.+.
T Consensus        88 ~l~~~-~~~~~~-----------------------------------------------------l~~L~~L~l~~~~~~  113 (266)
T d1p9ag_          88 QLQSL-PLLGQT-----------------------------------------------------LPALTVLDVSFNRLT  113 (266)
T ss_dssp             CCSSC-CCCTTT-----------------------------------------------------CTTCCEEECCSSCCC
T ss_pred             ccccc-cccccc-----------------------------------------------------ccccccccccccccc
Confidence            98753 333333                                                     347999999999999


Q ss_pred             ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcc
Q 004005          613 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKA  692 (779)
Q Consensus       613 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~  692 (779)
                      +..+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|||++|+|+ .+|..+.
T Consensus       114 ~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHC
Confidence            888888999999999999999999888889999999999999999999888889999999999999999999 7787777


Q ss_pred             ccccCCcccccCCCCCCCCCC
Q 004005          693 QFATFNESSYEGNTFLCGLPL  713 (779)
Q Consensus       693 ~~~~~~~~~~~~n~~~c~~~l  713 (779)
                      .+..+..+.+.||||.|+|.+
T Consensus       193 ~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         193 GSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCCCCEEEecCCCCCCCcch
Confidence            888999999999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=3.1e-16  Score=162.38  Aligned_cols=57  Identities=28%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcC
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNL  534 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  534 (779)
                      +..++.++.+++++|.... .+.   ...++..+.+.++.+... +   .....+...++..+.+
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccc-ccc---cccccccccccccccccc-c---cccccccccccccccc
Confidence            3445666666666665542 222   234566666666665422 1   1234555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=4.5e-16  Score=161.13  Aligned_cols=59  Identities=32%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             CCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005          622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  689 (779)
Q Consensus       622 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~  689 (779)
                      +++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|.   .+++|++|++++|+++ .+|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence            455666666666665 33422   355666666666665 3342   2345666666666665 3443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.2e-21  Score=205.83  Aligned_cols=114  Identities=21%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             CCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc-
Q 004005           20 SLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-   98 (779)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~-   98 (779)
                      +|++||+++++         +++.....+...++++++|+|++|.+++.+...++.++..+++|++|+|++|.+++... 
T Consensus         3 ~l~~ld~~~~~---------i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           3 DIQSLDIQCEE---------LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEESCC---------CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCEEEeeCCc---------CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            67889999888         65544333333888999999999988766666777788888999999999998864322 


Q ss_pred             ---hhhc-CCCCCCEEEcCCCcccCC----CCcccccCCCCCCEEEccCcccc
Q 004005           99 ---WCMA-NMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQ  143 (779)
Q Consensus        99 ---~~~~-~l~~L~~L~L~~n~l~~~----l~~~~l~~l~~L~~L~l~~n~~~  143 (779)
                         ..+. ..++|++|++++|++++.    ++. .+..+++|++|++++|.++
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCH
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccch
Confidence               2222 235799999998888632    233 5677888888888888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.7e-17  Score=160.26  Aligned_cols=220  Identities=19%  Similarity=0.147  Sum_probs=126.7

Q ss_pred             CEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcc
Q 004005          381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM  460 (779)
Q Consensus       381 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  460 (779)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+.                     
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~---------------------   66 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL---------------------   66 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTC---------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccc---------------------
Confidence            45555555554 3333221  35566666666665444445566666666666666554                     


Q ss_pred             cccccCcccccCCCCccEEeccC-ccCCCccCccccCCCCCCEEEccCCccccccccc-ccCCCCCCEEEccCCcCCCCC
Q 004005          461 LHGQLKRGTFFNCSSLVTLDLSY-NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ-LCELNQLQLLDLSNNNLHGPI  538 (779)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~  538 (779)
                        ..++..+|.+++.++++.+.. |.+....+..|.++++|+.+++++|.++...+.. +..+..+..+...++.+....
T Consensus        67 --~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          67 --EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             --CEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             --ceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence              223333466666666666543 4555555666677777777777777665332211 223344444444555554333


Q ss_pred             CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005          539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ  618 (779)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  618 (779)
                      +..|....                                                    ..++.|++++|+++...+..
T Consensus       145 ~~~~~~~~----------------------------------------------------~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGLS----------------------------------------------------FESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTSB----------------------------------------------------SSCEEEECCSSCCCEECTTT
T ss_pred             cccccccc----------------------------------------------------ccceeeeccccccccccccc
Confidence            33333221                                                    24677888888887544444


Q ss_pred             ccCCCCCC-EEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005          619 IGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  679 (779)
Q Consensus       619 l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  679 (779)
                      +.. .+++ .+.+++|+++.+.+..|.++++|++|++++|+++...+..|..+++|+++++.
T Consensus       173 ~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         173 FNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            443 4444 44567777876666678888888888888888876555566666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-19  Score=196.26  Aligned_cols=383  Identities=21%  Similarity=0.125  Sum_probs=212.6

Q ss_pred             ccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCccccchhhhh----C
Q 004005          257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV----G  328 (779)
Q Consensus       257 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~  328 (779)
                      +|++||++++++++..-..+...++++++|++++|.++.    .+...+..+++|+.|++++|.+++.....+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            566777777766643223333445677777777777653    23445567778888888888775322222222    2


Q ss_pred             CCCCCEEEccCcccCccC----cccCCCCCCCCEEEccCCcCCccCCcc----cc-CCCCCCEEEccCCCCCCCc----C
Q 004005          329 CVNLQFLALSNNNLQGHL----FSRNFNLTNLQWLQLEGNRFVGEIPQS----LS-KCSSLEGLYLNNNSLLGKI----P  395 (779)
Q Consensus       329 ~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~----~  395 (779)
                      ..+|++|++++|++++..    +..+..+++|++|++++|.+.......    +. ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            346788888887776432    234556777888888887765321111    11 1122333333333222110    0


Q ss_pred             ccccCCCCCcEEEccCCcccCCc----Cccc-CCCCCCcEEEccCCcCccCCCC-----ccCcccccEEEccCcccccc-
Q 004005          396 RWLGNLTRLQYIIMPNNHLEGPI----PVEF-CQLDSLQILDISDNNISGSLPS-----CFHPLSIKQVHLSKNMLHGQ-  464 (779)
Q Consensus       396 ~~~~~l~~L~~L~l~~n~~~~~~----~~~~-~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~L~~L~l~~n~~~~~-  464 (779)
                      ..+.....++.+.++++......    ...+ ..-.....+++..+.+......     ......++.+.+.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            12234566777777766543210    0111 1223455666666644321110     11145667777777654321 


Q ss_pred             ---cCcccccCCCCccEEeccCccCCCcc----CccccCCCCCCEEEccCCcccccccccc-----cCCCCCCEEEccCC
Q 004005          465 ---LKRGTFFNCSSLVTLDLSYNRLNGSI----PDWVDGLSQLSHLILGHNNLEGEVSVQL-----CELNQLQLLDLSNN  532 (779)
Q Consensus       465 ---~~~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n  532 (779)
                         .....+.....++.+++++|.+....    ...+...+.++.+++++|.++......+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               11122445667888888888775322    2234456778888888887764222211     23457888888887


Q ss_pred             cCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCccc
Q 004005          533 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  612 (779)
Q Consensus       533 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  612 (779)
                      .++......++..                                                 ....++|++|+|++|+++
T Consensus       323 ~l~~~~~~~l~~~-------------------------------------------------~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSV-------------------------------------------------LAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHH-------------------------------------------------HHHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhcccc-------------------------------------------------cccccchhhhheeeeccc
Confidence            7653211111110                                                 011236889999999886


Q ss_pred             cc----Ccccc-cCCCCCCEEECcccccccC----CCCCCCCCCCCCEEECCCCcCCCCCccc----cc-CCCCCcEEec
Q 004005          613 GH----IPPQI-GNLTRIQTLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQ----LV-ELKTLEVFSV  678 (779)
Q Consensus       613 ~~----~~~~l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~-~l~~L~~L~l  678 (779)
                      +.    ++..+ ...+.|++|+|++|++++.    +.+.+..+++|++|+|++|+++......    +. ....|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            43    22333 3456799999999988742    3345566788999999999887533322    22 2346899999


Q ss_pred             cCCcCcccCC
Q 004005          679 AYNNLSGEIP  688 (779)
Q Consensus       679 ~~N~l~~~~p  688 (779)
                      .+|.+....+
T Consensus       434 ~~~~~~~~~~  443 (460)
T d1z7xw1         434 YDIYWSEEME  443 (460)
T ss_dssp             TTCCCCHHHH
T ss_pred             CCCCCCHHHH
Confidence            9988875443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=2e-17  Score=154.22  Aligned_cols=128  Identities=28%  Similarity=0.413  Sum_probs=67.7

Q ss_pred             cEEeccCccCCCccCccccCCCCCCEEEccCCcccc-cccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005          477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS  555 (779)
Q Consensus       477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  555 (779)
                      +.++.++++++ .+|..+.  +++++|+|++|++++ ..+..|.++++|+.|++++|.+.+..+..|...+         
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~---------   78 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc---------
Confidence            35556666655 3343332  455666666666653 2234455555555555555555544444443322         


Q ss_pred             CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005          556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  635 (779)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  635 (779)
                                                                  .|++|+|++|++....+..|.++++|++|+|++|+|
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------ccceeeeccccccccCHHHHhCCCcccccccCCccc
Confidence                                                        455555555555554455555555555555555555


Q ss_pred             ccCCCCCCCCCCCCCEEECCCCcCC
Q 004005          636 TGSIPSTFSNLKHVESLDLSNNKLN  660 (779)
Q Consensus       636 ~~~~~~~~~~l~~L~~L~L~~N~l~  660 (779)
                      +++.+++|..+++|++|+|++|++.
T Consensus       115 ~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         115 SCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCHHHhcCCcccccccccccccc
Confidence            5555555555555555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-16  Score=156.01  Aligned_cols=195  Identities=19%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCcc-CcccCCCCCCCCEEEccC-CcCCccCCccccCCCCCCEE
Q 004005          306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH-LFSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGL  383 (779)
Q Consensus       306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  383 (779)
                      ++++|++++|.+. .++...+.++++|++|++++|.+... .+..|.+++.++++.+.. |.+....+..|.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4455555555544 44444444455555555555544332 233444555555555432 34444444555556666666


Q ss_pred             EccCCCCCCCcC-ccccCCCCCcEEEccCCcccCCcCcccCCCC-CCcEEEccCCcCccCCCCccCcccccEEE-ccCcc
Q 004005          384 YLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD-SLQILDISDNNISGSLPSCFHPLSIKQVH-LSKNM  460 (779)
Q Consensus       384 ~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~-l~~n~  460 (779)
                      ++++|.+....+ ..+..+..+..+...++.+....+..+.+++ .++.+++++|+++......+...+++++. +.+|.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            666655543222 1222334444444444444444344444433 55566666666654444444333333332 22222


Q ss_pred             cccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005          461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH  502 (779)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  502 (779)
                      + ..++...|.++++|++|++++|+++...+..|.++++|+.
T Consensus       189 l-~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         189 L-EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             C-CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             c-ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            2 2333333444455555555555444333333443333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.2e-16  Score=151.71  Aligned_cols=80  Identities=24%  Similarity=0.356  Sum_probs=36.1

Q ss_pred             CCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEE
Q 004005          352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL  431 (779)
Q Consensus       352 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  431 (779)
                      .+.+|+.|++.+|.+... + .+..+++|++|++++|.+.+..+  +..+++++.+++++|.++..  ..+.++++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccccccc
Confidence            344455555555544422 1 24445555555555554443221  44444555555544444422  124444555555


Q ss_pred             EccCCc
Q 004005          432 DISDNN  437 (779)
Q Consensus       432 ~l~~n~  437 (779)
                      +++++.
T Consensus       113 ~l~~~~  118 (227)
T d1h6ua2         113 DLTSTQ  118 (227)
T ss_dssp             ECTTSC
T ss_pred             cccccc
Confidence            554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.2e-16  Score=149.08  Aligned_cols=186  Identities=18%  Similarity=0.219  Sum_probs=103.9

Q ss_pred             CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEc
Q 004005          330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM  409 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (779)
                      .+|+.|++.+|.+++.  ..+..+++|++|++++|++.+..  .+..+++++.+++++|.++..  ..+..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            3444444444444432  22344444444444444444322  144444555555554444321  22444455555555


Q ss_pred             cCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCc
Q 004005          410 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  489 (779)
Q Consensus       410 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  489 (779)
                      +++...+.  ..+...+.++.+.++++.+... ......++|+.|++.+|.+....   .+.++++|++|++++|++++.
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccccch---hhcccccceecccCCCccCCC
Confidence            54444322  1233444555555555544322 11223445555555555543221   277889999999999998854


Q ss_pred             cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005          490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN  531 (779)
Q Consensus       490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  531 (779)
                       + .++++++|+.|++++|++++..  .+..+++|+.|++++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence             3 3788999999999999998543  388999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=7.7e-17  Score=150.14  Aligned_cols=171  Identities=20%  Similarity=0.255  Sum_probs=133.2

Q ss_pred             CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCC-CcccccCcccccccCCCCCCcchhhhhhcccccccccccc
Q 004005          500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI-PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN  578 (779)
Q Consensus       500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (779)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|..++                                
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~--------------------------------   54 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP--------------------------------   54 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT--------------------------------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCc--------------------------------
Confidence            468999999998 4565543  68999999999997643 44555443                                


Q ss_pred             cceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCc
Q 004005          579 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK  658 (779)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  658 (779)
                                           +|+.|++++|++....+..|..+++|++|+|++|+|+++.+++|.++++|++|+|++|+
T Consensus        55 ---------------------~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          55 ---------------------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             ---------------------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ---------------------eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                 79999999999998889999999999999999999998889999999999999999999


Q ss_pred             CCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005          659 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDN  734 (779)
Q Consensus       659 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~~~  734 (779)
                      |+++.++.|..+++|+++++++|++.|.++... ....+....+.+|...       |..|....+..+.+....+
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~-------c~~p~~l~~~~l~~L~~n~  181 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAAR-------CGAPSKVRDVQIKDLPHSE  181 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCB-------BCSSTTTTTSBGGGSCTTT
T ss_pred             ccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeE-------eCCChhhcCCEeeecCHhh
Confidence            998888999999999999999999998765421 1122333344455433       5556666665554444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.4e-15  Score=143.71  Aligned_cols=146  Identities=26%  Similarity=0.360  Sum_probs=100.6

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|++|++++|++++..  .+..+++|+.|++++|++++. + .+..+++|+.|++++|.+...  ..+.      
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~------  131 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLV------  131 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-ccccccccccccccccccccc--cccc------
Confidence            455677777777777776533  256677777777777777642 2 467777777777777765421  1121      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                     .++.++.+++++|.+++  +..+..+++|++++
T Consensus       132 -----------------------------------------------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         132 -----------------------------------------------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             -----------------------------------------------ccccccccccccccccc--cccccccccccccc
Confidence                                                           12367778888887763  34566778888888


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccC
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  680 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  680 (779)
                      +++|++++..  .+.++++|++|+|++|+++. +| .+..+++|++|++++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            8888887542  37788888888888888874 44 578888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4.9e-15  Score=138.56  Aligned_cols=142  Identities=30%  Similarity=0.445  Sum_probs=82.8

Q ss_pred             ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005          470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  549 (779)
Q Consensus       470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  549 (779)
                      +..+++|++|++++|++++..+  +.++++|+.|++++|.+....  .+.+++.|+.|++++|.+....  .+.      
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~--~~~------  125 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID--PLK------  125 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGT------
T ss_pred             cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccccccccccccccc--ccc------
Confidence            4455666666666666664332  566666666666666665322  3556666666666666554211  111      


Q ss_pred             cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005          550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN  629 (779)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  629 (779)
                                                                     .+++|+.|++++|++.. + ..+..+++|++|+
T Consensus       126 -----------------------------------------------~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~  156 (199)
T d2omxa2         126 -----------------------------------------------NLTNLNRLELSSNTISD-I-SALSGLTSLQQLN  156 (199)
T ss_dssp             -----------------------------------------------TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             -----------------------------------------------hhhhhHHhhhhhhhhcc-c-ccccccccccccc
Confidence                                                           12356666666666652 2 3466667777777


Q ss_pred             CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEE
Q 004005          630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  676 (779)
Q Consensus       630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  676 (779)
                      +++|++++..  .++++++|++|++++|+++. ++ .+.++++|+.|
T Consensus       157 l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7777776432  36667777777777777664 22 45666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=7.7e-15  Score=137.22  Aligned_cols=161  Identities=24%  Similarity=0.291  Sum_probs=89.7

Q ss_pred             CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005          329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII  408 (779)
Q Consensus       329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  408 (779)
                      ++++++|++++|.+...  ..+..+++|++|++++|++++..+  +.++++|++|++++|.+... + .+.++++|+.++
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccc
Confidence            44555555555555432  234455666666666666554322  55566666666666655432 1 255556666666


Q ss_pred             ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCC
Q 004005          409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  488 (779)
Q Consensus       409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  488 (779)
                      ++++.....  ..+..+++|+.|++++|++..                        ++  .+..+++++.|++++|++++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~------------------------~~--~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD------------------------IS--ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC------------------------CG--GGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc------------------------cc--cccccccccccccccccccC
Confidence            665555432  234555666666666555432                        11  15556677777777777664


Q ss_pred             ccCccccCCCCCCEEEccCCcccccccccccCCCCCCEE
Q 004005          489 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL  527 (779)
Q Consensus       489 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  527 (779)
                      ..  .+.++++|++|++++|++++.  ..++.+++|++|
T Consensus       165 l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             Cc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            32  366677777777777777642  235666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6.8e-15  Score=138.84  Aligned_cols=164  Identities=23%  Similarity=0.352  Sum_probs=90.1

Q ss_pred             CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEc
Q 004005          330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM  409 (779)
Q Consensus       330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (779)
                      .+|++|++++|.+....  .+..+++|++|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            34555555555544321  2444555555555555555332  23455555555555555543 22 3455555555555


Q ss_pred             cCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCc
Q 004005          410 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  489 (779)
Q Consensus       410 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  489 (779)
                      ++|.+...  ..+..++.++.+++++|.+++.                        +  .+..+++|+.+++++|++++.
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~------------------------~--~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI------------------------T--VLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--cccccccccccccccccccccc------------------------c--ccccccccccccccccccccc
Confidence            55554422  2344555555555555554321                        1  144566777777777777643


Q ss_pred             cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005          490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN  531 (779)
Q Consensus       490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  531 (779)
                      .  .+.++++|+.|++++|++++ ++ .+.++++|+.|++++
T Consensus       172 ~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             c--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            2  26677777777777777764 23 477777777777753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.2e-16  Score=154.16  Aligned_cols=128  Identities=17%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             CEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCC-cchh
Q 004005           22 EHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS-LPWC  100 (779)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~-~~~~  100 (779)
                      +.+|++++.         +.......+. . .....+.++.....    ... .......+|++||+++|.+++. +...
T Consensus         3 ~~lDLs~~~---------l~~~~l~~l~-~-~~~~~lrl~~~~~~----~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l   66 (284)
T d2astb2           3 QTLDLTGKN---------LHPDVTGRLL-S-QGVIAFRCPRSFMD----QPL-AEHFSPFRVQHMDLSNSVIEVSTLHGI   66 (284)
T ss_dssp             SEEECTTCB---------CCHHHHHHHH-H-TTCSEEECTTCEEC----SCC-CSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             CEEECCCCC---------CCchHHHHHH-h-ccceEeeccccccc----cch-hhhccCCCCCEEECCCCccCHHHHHHH
Confidence            478888877         4433333333 1 24567777766552    111 2233556899999998887654 4456


Q ss_pred             hcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCcc-ccCcCCcccccCCCCCcEEEccCCc
Q 004005          101 MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY-FQIPISLEPLFNYSRLKIFNAENNE  166 (779)
Q Consensus       101 ~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~~~  166 (779)
                      +.++++|++|++++|.+.+..+. .+.++++|++|+++++. ++..........+++|++|+++++.
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             HHhCCCcccccccccCCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc
Confidence            78889999999999888755555 67888899999998853 4421111123567788888887754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.5e-15  Score=147.26  Aligned_cols=182  Identities=21%  Similarity=0.217  Sum_probs=108.3

Q ss_pred             CCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCC-cCCCCCCccccccCCCCcE
Q 004005          207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN-NIRGHIPVKIGDVLPSLYV  285 (779)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~  285 (779)
                      .+|++||++++.+.+.....++..+++|++|++++|.+.+.....+..+++|++|++++| .+++.....+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            478888888887776555566778888888888888877655666777888888888885 3442222223334667777


Q ss_pred             EECCCCC-CCcc-cCcccc-CCCCCCEEEccCC--cCccccchhhhhCCCCCCEEEccCc-ccCccCcccCCCCCCCCEE
Q 004005          286 FNNSMNA-LDGS-IPSSFG-NMKFLQILDLSNN--HLTGEIPEHLAVGCVNLQFLALSNN-NLQGHLFSRNFNLTNLQWL  359 (779)
Q Consensus       286 L~l~~n~-~~~~-~~~~~~-~l~~L~~L~Ls~n--~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  359 (779)
                      |++++|. ++.. +...+. ..+.|+.|+++++  .+.+.....+...+++|++|++++| .+++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            7777653 3221 111122 2356777777654  2332222333345666777777664 3444444555566666666


Q ss_pred             EccCC-cCCccCCccccCCCCCCEEEccCC
Q 004005          360 QLEGN-RFVGEIPQSLSKCSSLEGLYLNNN  388 (779)
Q Consensus       360 ~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n  388 (779)
                      ++++| .+++.....+.++++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66664 343333334555566666666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.9e-14  Score=119.44  Aligned_cols=104  Identities=30%  Similarity=0.478  Sum_probs=65.8

Q ss_pred             cEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEE
Q 004005           56 KYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  135 (779)
Q Consensus        56 ~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L  135 (779)
                      |+|+|++|++     ..++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|++. .+|.  +.++++|++|
T Consensus         1 R~L~Ls~n~l-----~~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDL-----TVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCC-----SSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCC-----CCCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeE
Confidence            4666776666     2333 3566667777777777665 45556666777777777777666 4553  6667777777


Q ss_pred             EccCccccCcCCcccccCCCCCcEEEccCCccce
Q 004005          136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA  169 (779)
Q Consensus       136 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  169 (779)
                      ++++|.++.......+..+++|+.+++++|.+..
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            7777766643333456666677777777766653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.8e-14  Score=147.89  Aligned_cols=98  Identities=21%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCC----------cchhhcCCCCCCEEEcC
Q 004005           44 FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----------LPWCMANMTSLRILDVS  113 (779)
Q Consensus        44 ~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----------~~~~~~~l~~L~~L~L~  113 (779)
                      +...+. ....|+.|+|++|.+++.+...+.+.+...++|+.|+++++.....          +...+..+++|++|+++
T Consensus        23 l~~~L~-~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHh-hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            345566 7788999999998886666667777788888999999887754322          22345567778888888


Q ss_pred             CCcccCC----CCcccccCCCCCCEEEccCcccc
Q 004005          114 SNQLTGS----ISSSPLVHLTSIEELMLSNNYFQ  143 (779)
Q Consensus       114 ~n~l~~~----l~~~~l~~l~~L~~L~l~~n~~~  143 (779)
                      +|.+...    +.. .+..+++|++|++++|.+.
T Consensus       102 ~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         102 DNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             SCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCH
T ss_pred             ccccccccccchhh-hhcccccchheeccccccc
Confidence            7776532    222 3445667777777776553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-13  Score=119.38  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             ceEEccCCcccccCcccccCCCCCCEEECccc-ccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccC
Q 004005          602 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN-NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  680 (779)
Q Consensus       602 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  680 (779)
                      +.++.+++++. ..|..+.++++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34445555444 34444555555555555433 24444444555555555555555555544455555555555555555


Q ss_pred             CcCcccCCCCccccccCCcccccCCCCCCCC
Q 004005          681 NNLSGEIPEWKAQFATFNESSYEGNTFLCGL  711 (779)
Q Consensus       681 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~  711 (779)
                      |+++...+..+ +...+..+.+.+|||.|+|
T Consensus        90 N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          90 NALESLSWKTV-QGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SCCSCCCSTTT-CSCCCCEEECCSSCCCCCG
T ss_pred             CCCcccChhhh-ccccccccccCCCcccCCc
Confidence            55553333322 2223445555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=122.76  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCC-CCCCCCCCCCEEECCCCcCCCCC---cccccCCCCCcE
Q 004005          600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKI---PHQLVELKTLEV  675 (779)
Q Consensus       600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~  675 (779)
                      +|++|++++|+++...+..+..+++|++|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCe
Confidence            34444444444443333334445555555555555553211 34555666666666666664322   123556677777


Q ss_pred             Ee
Q 004005          676 FS  677 (779)
Q Consensus       676 L~  677 (779)
                      ||
T Consensus       144 LD  145 (162)
T d1a9na_         144 LD  145 (162)
T ss_dssp             ET
T ss_pred             eC
Confidence            66

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=122.56  Aligned_cols=86  Identities=21%  Similarity=0.267  Sum_probs=41.3

Q ss_pred             cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCc-ccccCC
Q 004005           51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHL  129 (779)
Q Consensus        51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~-~~l~~l  129 (779)
                      .+++|++|++++|.+     ..++ .+..+++|++|++++|+++...+..+..+++|++|++++|++. .++. ..+..+
T Consensus        39 ~l~~L~~L~Ls~N~i-----~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l  111 (162)
T d1a9na_          39 TLDQFDAIDFSDNEI-----RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASL  111 (162)
T ss_dssp             GTTCCSEEECCSSCC-----CEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGC
T ss_pred             ccccCCEEECCCCCC-----CccC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccc
Confidence            445555555555555     2221 3445555555555555554333333444555555555555554 2322 234455


Q ss_pred             CCCCEEEccCcccc
Q 004005          130 TSIEELMLSNNYFQ  143 (779)
Q Consensus       130 ~~L~~L~l~~n~~~  143 (779)
                      ++|++|++++|.++
T Consensus       112 ~~L~~L~l~~N~i~  125 (162)
T d1a9na_         112 KSLTYLCILRNPVT  125 (162)
T ss_dssp             TTCCEEECCSSGGG
T ss_pred             cccchhhcCCCccc
Confidence            55555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.3e-12  Score=110.46  Aligned_cols=119  Identities=20%  Similarity=0.195  Sum_probs=94.4

Q ss_pred             CEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhh
Q 004005           22 EHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM  101 (779)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~  101 (779)
                      |+|+|+++.         ++. ++ .+. .+++|++|++++|.+     +.+|++++.+++|++|++++|.+++. | .+
T Consensus         1 R~L~Ls~n~---------l~~-l~-~l~-~l~~L~~L~ls~N~l-----~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~   61 (124)
T d1dcea3           1 RVLHLAHKD---------LTV-LC-HLE-QLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALENV-D-GV   61 (124)
T ss_dssp             SEEECTTSC---------CSS-CC-CGG-GGTTCCEEECCSSCC-----CCCCGGGGGCTTCCEEECCSSCCCCC-G-GG
T ss_pred             CEEEcCCCC---------CCC-Cc-ccc-cCCCCCEEECCCCcc-----Ccchhhhhhhhccccccccccccccc-C-cc
Confidence            689999999         542 22 466 889999999999998     56788899999999999999999854 4 59


Q ss_pred             cCCCCCCEEEcCCCcccCCCCc-ccccCCCCCCEEEccCccccCcC--CcccccCCCCCcEE
Q 004005          102 ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIPI--SLEPLFNYSRLKIF  160 (779)
Q Consensus       102 ~~l~~L~~L~L~~n~l~~~l~~-~~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~l~~L~~L  160 (779)
                      +.+++|++|++++|++. .++. ..+..+++|++|++++|.++...  .......+++|+.+
T Consensus        62 ~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999999999998 4543 36889999999999999987422  22234445666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=115.71  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=76.0

Q ss_pred             cCcceEEccCCc-ccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005          599 SLLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  677 (779)
Q Consensus       599 ~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  677 (779)
                      ++|++|++++|+ ++...+.+|.++++|+.|+|++|+|+.+.+.+|.++++|++|+|++|+++...+..|.. .+|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccc
Confidence            368888887664 77677788999999999999999999888999999999999999999999665556654 4799999


Q ss_pred             ccCCcCcccCC
Q 004005          678 VAYNNLSGEIP  688 (779)
Q Consensus       678 l~~N~l~~~~p  688 (779)
                      +++|++.|.|.
T Consensus       110 L~~Np~~C~C~  120 (156)
T d2ifga3         110 LSGNPLHCSCA  120 (156)
T ss_dssp             CCSSCCCCCGG
T ss_pred             cCCCcccCCch
Confidence            99999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.31  E-value=5.9e-13  Score=136.37  Aligned_cols=240  Identities=17%  Similarity=0.142  Sum_probs=131.6

Q ss_pred             chhhcCCCCccEEEccCccCcccCChhh---hhcCCCCcEEEcCCCcCcCC----------CCcCcCCCCccCEEEccCC
Q 004005          200 PKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETLFLVNDSLAGP----------FRLPIHSHKRLRQLDVSNN  266 (779)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~n  266 (779)
                      ...+.....+++|++++|.+.......+   +...++|+.++++++.....          +...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3456667778888888887765443333   23457788888876654321          1123455677888888877


Q ss_pred             cCCCCCCcccc---ccCCCCcEEECCCCCCCcccCcc-------------ccCCCCCCEEEccCCcCccccchhh---hh
Q 004005          267 NIRGHIPVKIG---DVLPSLYVFNNSMNALDGSIPSS-------------FGNMKFLQILDLSNNHLTGEIPEHL---AV  327 (779)
Q Consensus       267 ~i~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~-------------~~~l~~L~~L~Ls~n~i~~~~~~~~---~~  327 (779)
                      .+.......+.   ...++|+.|++++|.+.......             ....+.|+.+.+++|.+.......+   ..
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            77643222221   12456777777777654211111             1345567777777776653322211   22


Q ss_pred             CCCCCCEEEccCcccCcc-----CcccCCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCCCCCCcCc--
Q 004005          328 GCVNLQFLALSNNNLQGH-----LFSRNFNLTNLQWLQLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLLGKIPR--  396 (779)
Q Consensus       328 ~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~--  396 (779)
                      .++.|++|++++|.+...     ....+...++|+.|++++|.+...    +...+..+++|++|++++|.+.+....  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            356677777777766532     123345566777777777765432    223455666777777777766533222  


Q ss_pred             --cccC--CCCCcEEEccCCcccCCc----CcccC-CCCCCcEEEccCCcCc
Q 004005          397 --WLGN--LTRLQYIIMPNNHLEGPI----PVEFC-QLDSLQILDISDNNIS  439 (779)
Q Consensus       397 --~~~~--l~~L~~L~l~~n~~~~~~----~~~~~-~l~~L~~L~l~~n~l~  439 (779)
                        .+..  .+.|++|++++|.+....    ...+. +.++|+.|++++|++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence              1221  245666666666654321    11221 3556666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=7e-13  Score=122.82  Aligned_cols=134  Identities=19%  Similarity=0.194  Sum_probs=102.2

Q ss_pred             CCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCc
Q 004005           18 FKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSL   97 (779)
Q Consensus        18 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~   97 (779)
                      ...++.+++.+..        .-...++..+. .+++|++|+|++|+++     .++ .+..+++|++|+|++|.++ .+
T Consensus        22 ~~~~~~~~l~~~~--------~~i~~l~~sl~-~L~~L~~L~Ls~n~I~-----~i~-~l~~l~~L~~L~Ls~N~i~-~i   85 (198)
T d1m9la_          22 ATEAEKVELHGMI--------PPIEKMDATLS-TLKACKHLALSTNNIE-----KIS-SLSGMENLRILSLGRNLIK-KI   85 (198)
T ss_dssp             CTTCSCEECCBCC--------TTCCCCHHHHH-HTTTCCEEECSEEEES-----CCC-CHHHHTTCCEEECCEEEEC-SC
T ss_pred             ccccceeeeeccc--------CchhhhhhHHh-cccccceeECcccCCC-----Ccc-cccCCccccChhhcccccc-cc
Confidence            3345566666542        01234456788 8999999999999983     443 5788999999999999987 45


Q ss_pred             chhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCcccee
Q 004005           98 PWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE  170 (779)
Q Consensus        98 ~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  170 (779)
                      +..+..+++|++|++++|+++ .++.  +.++++|++|++++|.++.......+..+++|+.|++++|.+...
T Consensus        86 ~~~~~~~~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          86 ENLDAVADTLEELWISYNQIA-SLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SSHHHHHHHCCEEECSEEECC-CHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccccccccccccc-cccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            656666778999999999998 5654  888999999999999987533334678899999999999987654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=4e-13  Score=124.45  Aligned_cols=135  Identities=24%  Similarity=0.284  Sum_probs=84.9

Q ss_pred             cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccc
Q 004005          490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG  569 (779)
Q Consensus       490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (779)
                      .+..+..+++|++|++++|+++.. + .+..+++|+.|++++|.++.. +..+.                          
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~--------------------------   90 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDA--------------------------   90 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC-SSHHH--------------------------
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc-ccccc--------------------------
Confidence            345566777777777777777643 2 466777777777777776532 21111                          


Q ss_pred             ccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCC-CCCCCCCC
Q 004005          570 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKH  648 (779)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  648 (779)
                                                 .++.|+.|++++|+++..  ..+..+++|+.|++++|+++.... ..+..+++
T Consensus        91 ---------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          91 ---------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ---------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ---------------------------cccccccccccccccccc--ccccccccccccccccchhccccccccccCCCc
Confidence                                       122577778888777642  346677778888888887774322 35677777


Q ss_pred             CCEEECCCCcCCCCCccc----------ccCCCCCcEEeccCCcCc
Q 004005          649 VESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLS  684 (779)
Q Consensus       649 L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~l~~N~l~  684 (779)
                      |+.|++++|++....+..          +..+++|+.||  +.+++
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            788888777775433321          45577777776  44443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.1e-08  Score=85.65  Aligned_cols=64  Identities=25%  Similarity=0.323  Sum_probs=27.7

Q ss_pred             CCCCCCEEeccCCCCCCC--cchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCcccc
Q 004005           79 SLVHLQELYIASNDLRGS--LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ  143 (779)
Q Consensus        79 ~l~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~  143 (779)
                      .+++|++|+|++|+++..  ++..+..+++|++|++++|.+. .++.....+..+|++|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            344455555555544432  1233444455555555555544 333211222334455555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=6e-07  Score=79.52  Aligned_cols=92  Identities=12%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             CCCCCCEEeCCCCcccccccccccccc----cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC
Q 004005           17 HFKSLEHFDMDFTRIALNTSFIALNTS----FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND   92 (779)
Q Consensus        17 ~l~~L~~L~L~~~~~~~~~~~~~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~   92 (779)
                      +.++|++|+|+++.        .+...    +...+. ..++|++|+|++|.+++.+...+.+.+...+.|++|+|++|.
T Consensus        13 n~~~L~~L~L~~~~--------~i~~~~~~~l~~~L~-~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          13 DDTDLKEVNINNMK--------RVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TCSSCCEEECTTCC--------SSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCCcEEEeCCCC--------CCCHHHHHHHHHHHh-hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            45667777776532        02211    233344 556677777777766555555555566666667777777776


Q ss_pred             CCCC----cchhhcCCCCCCEEEcCCCcc
Q 004005           93 LRGS----LPWCMANMTSLRILDVSSNQL  117 (779)
Q Consensus        93 l~~~----~~~~~~~l~~L~~L~L~~n~l  117 (779)
                      +++.    +..++...+.|++|++++|.+
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            6543    233455556666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.6e-07  Score=81.45  Aligned_cols=85  Identities=19%  Similarity=0.165  Sum_probs=66.5

Q ss_pred             hcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCc------
Q 004005           50 ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS------  123 (779)
Q Consensus        50 ~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~------  123 (779)
                      +.+++|++|+|++|+++++  ..++..+..+++|++|+|++|.+....+-.+.+..+|+.|++++|.+.+....      
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l--~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCC--SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCC--chhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3799999999999999653  34566678899999999999999865444455567899999999999754332      


Q ss_pred             ccccCCCCCCEEE
Q 004005          124 SPLVHLTSIEELM  136 (779)
Q Consensus       124 ~~l~~l~~L~~L~  136 (779)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1356788888885

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=2.1e-06  Score=75.88  Aligned_cols=120  Identities=19%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             hHHhhcCCCCcEEeCCCc-ccCCCCCCcccccccCCCCCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccCC
Q 004005           46 QIISESMPSLKYLSLSYY-TLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTGS  120 (779)
Q Consensus        46 ~~l~~~l~~L~~L~Ls~~-~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  120 (779)
                      +.+....++|+.|+|+++ .+++.+...+..++...++|++|+|++|.+.+.    +...+...+.|++|++++|.+.+.
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            344446789999999974 475544455667788889999999999988643    445667788999999999988632


Q ss_pred             ----CCcccccCCCCCCEEEccCccccCcC------CcccccCCCCCcEEEccCCc
Q 004005          121 ----ISSSPLVHLTSIEELMLSNNYFQIPI------SLEPLFNYSRLKIFNAENNE  166 (779)
Q Consensus       121 ----l~~~~l~~l~~L~~L~l~~n~~~~~~------~~~~l~~l~~L~~L~l~~~~  166 (779)
                          +-. ++...+.|++|++++|.+....      -...+...+.|+.|+++.+.
T Consensus        88 g~~~l~~-aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHH-HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                222 4667788999999887654210      11233455667777766544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.67  E-value=4.7e-06  Score=73.61  Aligned_cols=115  Identities=18%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             cCCCCcEEeCCC-cccCCCCCCcccccccCCCCCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccCC----C
Q 004005           51 SMPSLKYLSLSY-YTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTGS----I  121 (779)
Q Consensus        51 ~l~~L~~L~Ls~-~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----l  121 (779)
                      ..+.|++|++++ +.+++.+...+..++...++|++|++++|.++..    +...+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            445555555554 2343333333444455555555555555555432    223344455555555555554311    1


Q ss_pred             CcccccCCCCCCEEEcc--CccccCc---CCcccccCCCCCcEEEccCCc
Q 004005          122 SSSPLVHLTSIEELMLS--NNYFQIP---ISLEPLFNYSRLKIFNAENNE  166 (779)
Q Consensus       122 ~~~~l~~l~~L~~L~l~--~n~~~~~---~~~~~l~~l~~L~~L~l~~~~  166 (779)
                      .. .+...++|+.+++.  +|.+...   .-...+...+.|++|+++.+.
T Consensus        95 ~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            11 34445555554443  3333210   011223455666666665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.48  E-value=5.8e-06  Score=73.01  Aligned_cols=117  Identities=19%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             CCCCCCCEEeCCCCcccccccccccccc----cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCC
Q 004005           16 PHFKSLEHFDMDFTRIALNTSFIALNTS----FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASN   91 (779)
Q Consensus        16 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~   91 (779)
                      .+.+.|++|++++..        .+...    +...+. ..++|++|++++|.+++.+...+.+.+...+.++++++++|
T Consensus        14 ~~~~~L~~L~L~~~~--------~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          14 NNDPDLEEVNLNNIM--------NIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCTTCCEEECTTCT--------TCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCCCcEEEcCCCC--------CCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            467899999999743        03322    344555 78899999999999877666677778888899999999999


Q ss_pred             CCCCC----cchhhcCCCCCCEEEcC--CCcccC----CCCcccccCCCCCCEEEccCccc
Q 004005           92 DLRGS----LPWCMANMTSLRILDVS--SNQLTG----SISSSPLVHLTSIEELMLSNNYF  142 (779)
Q Consensus        92 ~l~~~----~~~~~~~l~~L~~L~L~--~n~l~~----~l~~~~l~~l~~L~~L~l~~n~~  142 (779)
                      .+...    +...+...++|+.++|+  +|.+..    .+.. .+...+.|++|+++.+..
T Consensus        85 ~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          85 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            88654    44667788999986664  555642    2333 567889999999987643